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Started by upstream project "BIOFORMATS-test-repo" build number 198 originally caused by: Started by upstream project "Trigger" build number 222 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins3900794460673226516.sh + '[' nd2 = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_31362_merge_ci -v /test/idr/repos/curated/nd2:/data -v /test/idr-scratch/merge-ci/curated/nd2:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 02:03:15,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:03:15,520 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:03:15,544 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:03:15,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:03:15,552 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:03:15,552 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:03:15,552 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:03:15,552 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:03:15,552 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@41a0aa7d - End of configuration. [testng] 02:03:15,554 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6574a52c - Registering current configuration as safe fallback point [testng] 02:03:15,554 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6c1a5b54 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 450 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-24 02:03:15,564] [main] java.version = 11.0.16 [testng] 02:03:15,568 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:03:15,568 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:15,710 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-24_02-03-15.log] [testng] 02:03:15,712 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-09-24 02:03:15,714] [main] testng.directory = /data [testng] [2024-09-24 02:03:15,714] [main] testng.configDirectory = /config [testng] [2024-09-24 02:03:15,740] [main] testng.multiplier = 1.0 [testng] [2024-09-24 02:03:15,742] [main] testng.in-memory = false [testng] [2024-09-24 02:03:15,742] [main] testng.allow-missing = false [testng] [2024-09-24 02:03:15,742] [main] user.language = en [testng] [2024-09-24 02:03:15,742] [main] user.country = ${user.country} [testng] [2024-09-24 02:03:15,742] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-09-24 02:03:46,107] [main] ---------------------------------------- [testng] [2024-09-24 02:03:46,108] [main] Total files: 275 [testng] [2024-09-24 02:03:46,108] [main] Scan time: 30.365 s (110 ms/file) [testng] [2024-09-24 02:03:46,108] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 247 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-24 02:11:39,024] [pool-1-thread-1] Initializing /data/kaustav/cell field2.nd2: [testng] 02:11:39,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:11:39,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:11:39,027 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-24_02-11-39.log] [testng] 02:11:39,028 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42d9f7e9 - End of configuration. [testng] [2024-09-24 02:11:39,381] [pool-1-thread-12] Initializing /data/kevin/sfeertjes 100 nm 10 000x 15p (1).nd2: [testng] 02:11:39,382 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:11:39,382 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:11:39,383 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-24_02-11-39.log] [testng] 02:11:39,384 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78672278 - End of configuration. [testng] [2024-09-24 02:11:39,480] [pool-1-thread-11] Initializing /data/public/jonas/jonas_nd2Test/Exception61.nd2: [testng] 02:11:39,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:11:39,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:11:39,482 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-24_02-11-39.log] [testng] 02:11:39,482 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12450c32 - End of configuration. [testng] [2024-09-24 02:11:39,586] [pool-1-thread-10] Initializing /data/sara/Ex9 ALADIN WT KO KI 31_07_2013.nd2: [testng] 02:11:39,586 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:11:39,586 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:11:39,587 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-24_02-11-39.log] [testng] 02:11:39,588 |-INFO in ch.qos.logback.core.sift.SiftProcessor@695caa5 - End of configuration. [testng] [2024-09-24 02:11:40,601] [pool-1-thread-9] Initializing /data/kevin/100nm_1.nd2: [testng] 02:11:40,602 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:11:40,602 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:11:40,603 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-24_02-11-40.log] [testng] 02:11:40,604 |-INFO in ch.qos.logback.core.sift.SiftProcessor@237ff18b - End of configuration. [testng] [2024-09-24 02:11:41,478] [pool-1-thread-8] Initializing /data/public/jonas/movieSize/JJ_RNAi_hmr-1_001.nd2: [testng] 02:11:41,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:11:41,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:11:41,482 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-24_02-11-41.log] [testng] 02:11:41,484 |-INFO in ch.qos.logback.core.sift.SiftProcessor@206de30 - End of configuration. [testng] [2024-09-24 02:11:41,854] [pool-1-thread-7] Initializing /data/qa-28066/20191203-htirf-sona.nd2: [testng] 02:11:41,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:11:41,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:11:41,857 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-24_02-11-41.log] [testng] 02:11:41,858 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7dfbaf3a - End of configuration. [testng] [2024-09-24 02:11:42,003] [pool-1-thread-6] Initializing /data/qa-7908/020514 SH003.nd2: [testng] 02:11:42,003 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:11:42,003 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:11:42,004 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-24_02-11-42.log] [testng] 02:11:42,005 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a2a1db - End of configuration. [testng] [2024-09-24 02:11:42,149] [pool-1-thread-5] Initializing /data/public/jonas/512c/nikonTest_two.nd2: [testng] 02:11:42,149 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:11:42,149 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:11:42,151 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-24_02-11-42.log] [testng] 02:11:42,151 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5953e029 - End of configuration. [testng] [2024-09-24 02:11:42,438] [pool-1-thread-4] Initializing /data/michael/opens_skewed.nd2: [testng] 02:11:42,438 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:11:42,439 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:11:42,439 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-24_02-11-42.log] [testng] 02:11:42,440 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7088ba6e - End of configuration. [testng] [2024-09-24 02:11:42,934] [pool-1-thread-3] Initializing /data/benjamin/B2.nd2: [testng] 02:11:42,934 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:11:42,934 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:11:42,935 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-24_02-11-42.log] [testng] 02:11:42,936 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c3a9659 - End of configuration. [testng] [2024-09-24 02:11:43,783] [pool-1-thread-2] Initializing /data/qa-29035/Seq0000.nd2: [testng] 02:11:43,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:11:43,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:11:43,785 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-24_02-11-43.log] [testng] 02:11:43,786 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50347e - End of configuration. [testng] [2024-09-24 02:11:46,865] [pool-1-thread-12] Initializing /data/stephen/Cody_Temp_Copy_crop.tif: [testng] [2024-09-24 02:11:47,409] [pool-1-thread-11] Initializing /data/qa-31330/Hotel_02-Slot_01-Slide_01-Region_1_Stitched.nd2: [testng] [2024-09-24 02:11:47,534] [pool-1-thread-7] Initializing /data/public/jonas/JJ1473_control_24h/JJ1473_conrol_24h_02.nd2: [testng] [2024-09-24 02:11:48,500] [pool-1-thread-6] Initializing /data/michael/test_MCammer.nd2: [testng] [2024-09-24 02:11:48,760] [pool-1-thread-12] Initializing /data/henry/large image.nd2: [testng] [2024-09-24 02:11:49,207] [pool-1-thread-5] Initializing /data/kyle/B204.nd2: [testng] [2024-09-24 02:11:49,404] [pool-1-thread-8] Initializing /data/john/M900117_CBP11555_C264M2_SOL_CD31_s1.nd2: [testng] [2024-09-24 02:11:50,443] [pool-1-thread-1] Initializing /data/public/aryeh/b16_14_12.nd2: [testng] [2024-09-24 02:11:51,173] [pool-1-thread-7] Initializing /data/qa-7535/RNAi_CLC-1_010_kymo1.nd2: [testng] [2024-09-24 02:11:51,477] [pool-1-thread-11] Initializing /data/mariana/Captured 1.nd2: [testng] [2024-09-24 02:11:52,089] [pool-1-thread-2] Initializing /data/david/NDSequence011.nd2: [testng] [2024-09-24 02:11:52,814] [pool-1-thread-6] Initializing /data/kevin/100nm_coat_1.nd2: [testng] [2024-09-24 02:11:53,624] [pool-1-thread-12] Initializing /data/qa-17099/upSIAPdownNT002.nd2: [testng] [2024-09-24 02:11:54,013] [pool-1-thread-7] Initializing /data/venu/1_140508,control.nd2: [testng] [2024-09-24 02:11:56,012] [pool-1-thread-9] Initializing /data/michael/opens_ok.nd2: [testng] [2024-09-24 02:11:57,011] [pool-1-thread-4] Initializing /data/qa-7303/CTR011.nd2: [testng] [2024-09-24 02:11:57,935] [pool-1-thread-2] Initializing /data/public/aryeh/qa-9507/control003.nd2: [testng] [2024-09-24 02:12:00,081] [pool-1-thread-12] Initializing /data/dan/120109_test.nd2: [testng] [2024-09-24 02:12:00,607] [pool-1-thread-11] Initializing /data/qa-7906/2591B.jp2: [testng] [2024-09-24 02:12:00,940] [pool-1-thread-8] Initializing /data/gh-3838/small_test.nd2: [testng] [2024-09-24 02:12:01,261] [pool-1-thread-5] Initializing /data/qa-9193/60x oil line scan 1 airy mono.nd2: [testng] [2024-09-24 02:12:01,539] [pool-1-thread-8] Initializing /data/david/NDSequence013.nd2: [testng] [2024-09-24 02:12:01,802] [pool-1-thread-1] Initializing /data/kevin/lipo100nmPEG_1.nd2: [testng] [2024-09-24 02:12:01,938] [pool-1-thread-7] Initializing /data/public/jonas/header_test2.nd2: [testng] [2024-09-24 02:12:02,148] [pool-1-thread-5] Initializing /data/josh/072007h.nd2: [testng] [2024-09-24 02:12:02,487] [pool-1-thread-4] Initializing /data/yanmei/snapcells-vps1002.nd2: [testng] [2024-09-24 02:12:02,743] [pool-1-thread-12] Initializing /data/strand/Serie040.nd2: [testng] [2024-09-24 02:12:03,479] [pool-1-thread-1] Initializing /data/gaurav/A1.nd2: [testng] [2024-09-24 02:12:03,667] [pool-1-thread-5] Initializing /data/jcb/201101064/Fig 8B imp beta-BPN MaxIP.nd2: [testng] [2024-09-24 02:12:04,260] [pool-1-thread-7] Initializing /data/michael/opened skewed - C=1.tif: [testng] [2024-09-24 02:12:04,732] [pool-1-thread-4] Initializing /data/colin/20110729_beads_001.nd2: [testng] [2024-09-24 02:12:05,280] [pool-1-thread-6] Initializing /data/colin/20110729_beads_001_xy1.nd2: [testng] [2024-09-24 02:12:05,537] [pool-1-thread-3] Initializing /data/imagesc-76438/Slide2-20-2_Region0003_ChannelBrightfield_Seq0013.nd2: [testng] [2024-09-24 02:12:07,630] [pool-1-thread-8] Initializing /data/nadya/Capture1.PNG: [testng] [2024-09-24 02:12:07,916] [pool-1-thread-8] Initializing /data/venu/four_160807_control cells_4D.tif: [testng] [2024-09-24 02:12:08,034] [pool-1-thread-12] Initializing /data/bassem/A PSF1.nd2: [testng] [2024-09-24 02:12:08,716] [pool-1-thread-12] Initializing /data/kevin/100&210nm_coat_1.nd2: [testng] [2024-09-24 02:12:09,528] [pool-1-thread-1] Initializing /data/public/aryeh/Time sequence 24.nd2: [testng] [2024-09-24 02:12:10,092] [pool-1-thread-8] Initializing /data/public/aryeh/MeOh_high_fluo_011.nd2: [testng] [2024-09-24 02:12:11,039] [pool-1-thread-5] Initializing /data/rehan/P128 wt pg bouton.ics: [testng] [2024-09-24 02:12:11,160] [pool-1-thread-7] Initializing /data/venu/N202-15 20x001.nd2: [testng] [2024-09-24 02:12:11,432] [pool-1-thread-6] Initializing /data/public/jonas/JJ1473_control_24h/JJ1473_control_24h_03.nd2: [testng] [2024-09-24 02:12:12,428] [pool-1-thread-9] Initializing /data/guillaume/clones082908.nd2: [testng] [2024-09-24 02:12:13,463] [pool-1-thread-5] Initializing /data/public/maxime/BF007.nd2: [testng] [2024-09-24 02:12:14,298] [pool-1-thread-4] Initializing /data/chris/228 and 340.nd2: [testng] [2024-09-24 02:12:15,086] [pool-1-thread-7] Initializing /data/venu/nd-three_channel-4.nd2: [testng] [2024-09-24 02:12:15,869] [pool-1-thread-6] Initializing /data/michael/MCammer Nikon file that wont open.nd2: [testng] [2024-09-24 02:12:15,930] [pool-1-thread-8] Initializing /data/public/jonas/512c/cag_p5_simgc_2511_70ms22s_crop.nd2: [testng] [2024-09-24 02:12:16,083] [pool-1-thread-5] Initializing /data/qa-29438/chip1_channel1_each-pixel.nd2: [testng] [2024-09-24 02:12:17,222] [pool-1-thread-6] Initializing /data/guillaume/Lig_drugs051607.nd2: [testng] [2024-09-24 02:12:18,065] [pool-1-thread-5] Initializing /data/plaissue/4channel_Zseries_2XYpoints_withROIandBinaryLayer.nd2: [testng] [2024-09-24 02:12:18,335] [pool-1-thread-12] Initializing /data/ye-chen/LOCI_YeChen_Swinburne.nd2: [testng] [2024-09-24 02:12:18,672] [pool-1-thread-7] Initializing /data/qa-29006/Voltron_Test004.nd2: [testng] [2024-09-24 02:12:20,167] [pool-1-thread-8] Initializing /data/public/jonas/512c/nikonTest_1.nd2: [testng] [2024-09-24 02:12:20,496] [pool-1-thread-4] Initializing /data/qa-4958/521_t1.nd2: [testng] [2024-09-24 02:12:20,943] [pool-1-thread-5] Initializing /data/bernhard/962.nd2: [testng] [2024-09-24 02:12:21,825] [pool-1-thread-1] Initializing /data/liang/2x2 bad.nd2: [testng] [2024-09-24 02:12:22,729] [pool-1-thread-12] Initializing /data/michael/Opens ok with LOCI.nd2: [testng] [2024-09-24 02:12:24,257] [pool-1-thread-7] Initializing /data/dallas/150609_m597_ut8.nd2: [testng] [2024-09-24 02:12:24,538] [pool-1-thread-8] Initializing /data/public/aryeh/MeOh_high_fluo_007.nd2: [testng] [2024-09-24 02:12:24,832] [pool-1-thread-4] Initializing /data/pierre/G.nd2: [testng] [2024-09-24 02:12:26,559] [pool-1-thread-12] Initializing /data/qa-11064/t2_mp8_z4_ch3__channelsDeleted.nd2: [testng] [2024-09-24 02:12:27,332] [pool-1-thread-4] Initializing /data/imagesc-76438/Slide2-20-1_Region0001_ChannelBrightfield_Seq0003.nd2: [testng] [2024-09-24 02:12:31,872] [pool-1-thread-11] Initializing /data/pki/20120730 RGB 293-S1PR1-eGFP 8 compound 24hr v1.nd2: [testng] [2024-09-24 02:12:33,093] [pool-1-thread-8] Initializing /data/public/aryeh/MeOh_high_fluo_003.nd2: [testng] [2024-09-24 02:12:35,358] [pool-1-thread-6] Initializing /data/public/jonas/jonas_nd2Test/Exception9_e3.nd2: [testng] [2024-09-24 02:12:35,439] [pool-1-thread-12] Initializing /data/venu/nd-three_channel-0.nd2: [testng] [2024-09-24 02:12:35,886] [pool-1-thread-1] Initializing /data/qa-7906/2591A.jp2: [testng] [2024-09-24 02:12:36,788] [pool-1-thread-6] Initializing /data/venu/nd-two_channel-3.nd2: [testng] [2024-09-24 02:12:37,106] [pool-1-thread-8] Initializing /data/david/NDSequence012.nd2: [testng] [2024-09-24 02:12:39,747] [pool-1-thread-9] Initializing /data/josh/CGE1.nd2: [testng] [2024-09-24 02:12:40,824] [pool-1-thread-8] Initializing /data/public/jonas/divisionByZero/290110.tranMgc005cr.nd2: [testng] [2024-09-24 02:12:41,343] [pool-1-thread-6] Initializing /data/strand/Reconstructed ND acquisition1.nd2: [testng] [2024-09-24 02:12:41,592] [pool-1-thread-9] Initializing /data/michael/10um skewed.nd2: [testng] [2024-09-24 02:12:41,946] [pool-1-thread-2] Initializing /data/public/aryeh/weekend002.nd2: [testng] [2024-09-24 02:12:44,152] [pool-1-thread-12] Initializing /data/qa-4973/CX3+MCh Long Ova(4Henry)002.nd2: [testng] [2024-09-24 02:12:48,573] [pool-1-thread-10] Initializing /data/christian/CW002_3_rfp.nd2: [testng] [2024-09-24 02:12:48,718] [pool-1-thread-12] Initializing /data/kevin/test3.nd2: [testng] [2024-09-24 02:12:48,788] [pool-1-thread-6] Initializing /data/yarden/KH2_Well1_4x.nd2: [testng] [2024-09-24 02:12:49,335] [pool-1-thread-8] Initializing /data/stefanie/200307_necl2.nd2: [testng] [2024-09-24 02:13:03,118] [pool-1-thread-5] Initializing /data/qa-9183/aaron_multi_positions.nd2: [testng] [2024-09-24 02:13:03,225] [pool-1-thread-9] Initializing /data/colin/20110729_beads_001_xy2.nd2: [testng] [2024-09-24 02:13:03,993] [pool-1-thread-12] Initializing /data/richard/KitWv67-72.nd2: [testng] [2024-09-24 02:13:05,849] [pool-1-thread-10] Initializing /data/public/jonas/512c/wtf_alignment.nd2: [testng] [2024-09-24 02:13:07,218] [pool-1-thread-9] Initializing /data/matt/Final merge.nd2: [testng] [2024-09-24 02:13:09,795] [pool-1-thread-10] Initializing /data/public/jonas/2112-2265.nd2: [testng] [2024-09-24 02:13:12,104] [pool-1-thread-5] Initializing /data/qa-10100/20141002_V019+AFP1052n3-005.nd2: [testng] [2024-09-24 02:13:13,405] [pool-1-thread-9] Initializing /data/jennet/2D001_crop.nd2: [testng] [2024-09-24 02:13:15,933] [pool-1-thread-5] Initializing /data/public/aryeh/old_cells_02.nd2: [testng] [2024-09-24 02:13:16,179] [pool-1-thread-9] Initializing /data/qa-5042/8xyPoints_3channels_00_30m001_latelyOnly7xyIdentified.nd2: [testng] [2024-09-24 02:13:17,202] [pool-1-thread-2] Initializing /data/qa-17785/spc2493.nd2: [testng] [2024-09-24 02:13:19,509] [pool-1-thread-5] Initializing /data/stephen/Cody_Temp_Copy_crop.nd2: [testng] [2024-09-24 02:13:19,646] [pool-1-thread-1] Initializing /data/venu/two_160807_control cells_4D.tif: [testng] [2024-09-24 02:13:21,008] [pool-1-thread-5] Initializing /data/stefanie/nd026_xy1.nd2: [testng] [2024-09-24 02:13:21,738] [pool-1-thread-10] Initializing /data/qa-29043/Actin-Polymerization-10min-2s.nd2: [testng] [2024-09-24 02:13:21,882] [pool-1-thread-2] Initializing /data/cameron/CamND2.nd2: [testng] [2024-09-24 02:13:22,095] [pool-1-thread-1] Initializing /data/chris/MIX 1 FITC 200MS.nd2: [testng] [2024-09-24 02:13:22,400] [pool-1-thread-6] Initializing /data/qa-4958/556_t2.nd2: [testng] [2024-09-24 02:13:23,121] [pool-1-thread-12] Initializing /data/karsten/100720104_TestglasSchott_MM63_C16h_SYTO.nd2: [testng] [2024-09-24 02:13:25,352] [pool-1-thread-2] Initializing /data/public/jonas/movieSize/JJ_RNAi_hmr-1_001_CropCyan.nd2: [testng] [2024-09-24 02:13:25,883] [pool-1-thread-9] Initializing /data/michael/opened skewed - C=0.tif: [testng] [2024-09-24 02:13:26,053] [pool-1-thread-10] Initializing /data/venu/eight_160807_control cells_4D.tif: [testng] [2024-09-24 02:13:26,257] [pool-1-thread-5] Initializing /data/venu/nd-three_channel-1.nd2: [testng] [2024-09-24 02:13:26,590] [pool-1-thread-6] Initializing /data/barseno/r1008.nd2: [testng] [2024-09-24 02:13:27,107] [pool-1-thread-2] Initializing /data/venu/nd-three_channel-2.nd2: [testng] [2024-09-24 02:13:27,378] [pool-1-thread-1] Initializing /data/imagesc-76438/Slide2-20-2_Region0001_ChannelBrightfield_Seq0011.nd2: [testng] [2024-09-24 02:13:43,650] [pool-1-thread-6] Initializing /data/michael/metadata only reported for last channel.nd2: [testng] [2024-09-24 02:13:44,002] [pool-1-thread-10] Initializing /data/public/aryeh/b16_pdtB+y50__crop.nd2: [testng] [2024-09-24 02:13:50,659] [pool-1-thread-9] Initializing /data/tom/512x512x11 1um step.nd2: [testng] [2024-09-24 02:13:51,460] [pool-1-thread-7] Initializing /data/katherina/120312_488HP_Convallaria nueva.nd2: [testng] [2024-09-24 02:13:51,809] [pool-1-thread-9] Initializing /data/jose/08_SO4_Fasc100_at_surface_w_average.nd2: [testng] [2024-09-24 02:13:52,288] [pool-1-thread-5] Initializing /data/michael/TEMPmcammer.nd2: [testng] [2024-09-24 02:13:53,025] [pool-1-thread-6] Initializing /data/richard/Nf1#49-#54.nd2: [testng] [2024-09-24 02:13:59,587] [pool-1-thread-11] Initializing /data/brian/MDCK002.nd2: [testng] [2024-09-24 02:13:59,851] [pool-1-thread-2] Initializing /data/public/jonas/multicolorTest.nd2: [testng] [2024-09-24 02:14:01,515] [pool-1-thread-3] Initializing /data/bioformats2raw-184/Round1-Slot_01-Slide_01-Region_1-Stitched-Focused.nd2: [testng] [2024-09-24 02:18:25,172] [pool-1-thread-7] Initializing /data/john/M900117_CBP11555_C264M2_GAST_T1_s1.nd2: [testng] [2024-09-24 02:18:26,549] [pool-1-thread-11] Initializing /data/qa-5042/8xyPoints_3channels_00_30m235_all8xyIdentified.nd2: [testng] [2024-09-24 02:18:27,620] [pool-1-thread-9] Initializing /data/imagesc-76438/Slide2-20-1_Region0000_ChannelBrightfield_Seq0002.nd2: [testng] [2024-09-24 02:18:53,894] [pool-1-thread-11] Initializing /data/public/jonas/control002.nd2: [testng] [2024-09-24 02:18:55,655] [pool-1-thread-5] Initializing /data/stephen/LOCI_screen_dump.jpg: [testng] [2024-09-24 02:18:56,152] [pool-1-thread-5] Initializing /data/stefanie/nd026_xy3.nd2: [testng] [2024-09-24 02:18:56,439] [pool-1-thread-11] Initializing /data/venu/N202-7 20x.nd2: [testng] [2024-09-24 02:18:59,055] [pool-1-thread-5] Initializing /data/michael/stopped-acquisition/ND2 file does not open MCammer.nd2: [testng] [2024-09-24 02:19:00,140] [pool-1-thread-11] Initializing /data/qa-4969/image.nd2: [testng] [2024-09-24 02:19:03,636] [pool-1-thread-11] Initializing /data/qa-7572/cells.nd2: [testng] [2024-09-24 02:19:04,760] [pool-1-thread-7] Initializing /data/public/jonas/header_test1.nd2: [testng] [2024-09-24 02:19:05,261] [pool-1-thread-5] Initializing /data/imagesc-76438/FirstFileUsed_Slide2-20-1_ChannelBrightfield_Seq0001.nd2: [testng] [2024-09-24 02:19:07,148] [pool-1-thread-5] Initializing /data/kevin/test1.nd2: [testng] [2024-09-24 02:19:08,519] [pool-1-thread-7] Initializing /data/jcb/201101064/Fig 8B imp beta-BPM MaxIP.nd2: [testng] [2024-09-24 02:19:09,067] [pool-1-thread-5] Initializing /data/kevin/DD100liposomes_1.nd2: [testng] [2024-09-24 02:19:09,871] [pool-1-thread-12] Initializing /data/michael/tiling_problem_mcammer.nd2: [testng] [2024-09-24 02:19:11,236] [pool-1-thread-5] Initializing /data/qa-4836/MGH media d10 large image_crop.nd2: [testng] [2024-09-24 02:19:12,930] [pool-1-thread-11] Initializing /data/venu/nd-three_channel-6.nd2: [testng] [2024-09-24 02:19:14,119] [pool-1-thread-7] Initializing /data/gh-2955/cluster.nd2: [testng] [2024-09-24 02:19:14,908] [pool-1-thread-7] Initializing /data/venu/six_160807_control cells_4D.tif: [testng] [2024-09-24 02:19:16,529] [pool-1-thread-7] Initializing /data/plaissue/4channel_Zseries.nd2: [testng] [2024-09-24 02:19:16,999] [pool-1-thread-11] Initializing /data/public/aryeh/4_2_1_cont_NoMR001.nd2: [testng] [2024-09-24 02:19:26,479] [pool-1-thread-12] Initializing /data/stefanie/nd026_xy2.nd2: [testng] [2024-09-24 02:19:26,754] [pool-1-thread-7] Initializing /data/venu/N202.1A+7 2h.nd2: [testng] [2024-09-24 02:19:29,283] [pool-1-thread-7] Initializing /data/jcb/201101064/Fig 8B imp beta alone-MaxIP.nd2: [testng] [2024-09-24 02:19:30,214] [pool-1-thread-12] Initializing /data/qa-7983/control_test_200314001.nd2: [testng] [2024-09-24 02:19:33,608] [pool-1-thread-7] Initializing /data/katherina/120312_488HP_Convallaria nueva - C=1.tif: [testng] [2024-09-24 02:19:34,124] [pool-1-thread-7] Initializing /data/qa-29634/20201007_2_OCT4DBD-Halo_PA64625nM_1kframe_tail_7ms_40pert_008.nd2: [testng] [2024-09-24 02:19:36,601] [pool-1-thread-7] Initializing /data/sarah/sarah_1011.nd2: [testng] [2024-09-24 02:19:37,079] [pool-1-thread-2] Initializing /data/christian/missing-dimensions-test.nd2: [testng] [2024-09-24 02:19:37,442] [pool-1-thread-12] Initializing /data/public/jonas/3.nd2: [testng] [2024-09-24 02:20:17,495] [pool-1-thread-2] Initializing /data/marek/NIS4_fails_to_open_correctly.nd2: [testng] [2024-09-24 02:20:17,892] [pool-1-thread-7] Initializing /data/public/aryeh/4_con_2_1_cot002.nd2: [testng] [2024-09-24 02:20:31,644] [pool-1-thread-5] Initializing /data/michael/50um_001 correct.nd2: [testng] [2024-09-24 02:20:33,904] [pool-1-thread-2] Initializing /data/pki/15July2011 ImClone multiwell test file.nd2: [testng] [2024-09-24 02:20:36,730] [pool-1-thread-2] Initializing /data/leon/WellA1_Seq0000.nd2: [testng] [2024-09-24 02:20:39,214] [pool-1-thread-5] Initializing /data/richard/15ug.nd2: [testng] [2024-09-24 02:20:40,267] [pool-1-thread-5] Initializing /data/bernhard/962_xy1.nd2: [testng] [2024-09-24 02:20:40,951] [pool-1-thread-10] Initializing /data/tiao/WellC03_Seq0000.nd2: [testng] [2024-09-24 02:20:43,132] [pool-1-thread-6] Initializing /data/venu/nd-three_channel-3.nd2: [testng] [2024-09-24 02:20:43,878] [pool-1-thread-5] Initializing /data/qa-7535/JJ_Controls_D_004.nd2: [testng] [2024-09-24 02:20:45,290] [pool-1-thread-2] Initializing /data/david/nc4r-la Ka004.nd2: [testng] [2024-09-24 02:20:47,559] [pool-1-thread-10] Initializing /data/sara/Ex9 ALADIN WT KO KI 31_07_2013.avi: [testng] [2024-09-24 02:20:49,742] [pool-1-thread-2] Initializing /data/qa-7454/Dapi PFA Eukitt 1r 001.nd2: [testng] [2024-09-24 02:20:52,500] [pool-1-thread-6] Initializing /data/qa-4196/120123 10h timelapse after incubator set up 1xy 1t.nd2: [testng] [2024-09-24 02:20:52,972] [pool-1-thread-10] Initializing /data/imagesc-76438/Slide2-20-2_ChannelBrightfield_Seq0009.nd2: [testng] [2024-09-24 02:20:53,281] [pool-1-thread-5] Initializing /data/qa-4305/22492726_Figure 5_B_NA_3.nd2: [testng] [2024-09-24 02:20:56,130] [pool-1-thread-10] Initializing /data/fiji-655/01.nd2: [testng] [2024-09-24 02:20:57,107] [pool-1-thread-6] Initializing /data/qa-7303/CTR_012.nd2: [testng] [2024-09-24 02:20:57,520] [pool-1-thread-4] Initializing /data/michael/50um_004 skewed.nd2: [testng] [2024-09-24 02:20:58,530] [pool-1-thread-5] Initializing /data/qa-7906/2591A1.jp2: [testng] [2024-09-24 02:20:59,889] [pool-1-thread-10] Initializing /data/venu/nd-two_channel-4.nd2: [testng] [2024-09-24 02:21:01,213] [pool-1-thread-6] Initializing /data/hallie/RNAi Plate 4.nd2: [testng] [2024-09-24 02:21:01,858] [pool-1-thread-11] Initializing /data/michael/3 stage positions 2 ch opens out of order with LOCI .nd2: [testng] [2024-09-24 02:21:03,743] [pool-1-thread-10] Initializing /data/kyle-vrtis/180627 1e Cas9 GINS collapse lag lag.nd2: [testng] [2024-09-24 02:21:06,597] [pool-1-thread-2] Initializing /data/nadya/flat.nd2: [testng] [2024-09-24 02:21:06,984] [pool-1-thread-11] Initializing /data/yarden/Session26_Well1_10x.nd2: [testng] [2024-09-24 02:21:09,138] [pool-1-thread-4] Initializing /data/public/aryeh/por003.nd2: [testng] [2024-09-24 02:21:10,754] [pool-1-thread-2] Initializing /data/public/jonas/qa-7534/130606_JCC719_003.nd2: [testng] [2024-09-24 02:21:19,457] [pool-1-thread-4] Initializing /data/jason/CapturedBF2.nd2: [testng] [2024-09-24 02:21:21,476] [pool-1-thread-4] Initializing /data/kevin/test2.nd2: [testng] [2024-09-24 02:21:22,540] [pool-1-thread-4] Initializing /data/unknown_fiji_upload/Day_2_A4_10x_Fluor_Z_Stack.nd2: [testng] [2024-09-24 02:21:23,769] [pool-1-thread-4] Initializing /data/venu/nd-three_channel-5.nd2: [testng] [2024-09-24 02:21:28,012] [pool-1-thread-4] Initializing /data/david/_t4h f.nd2: [testng] [2024-09-24 02:21:29,166] [pool-1-thread-4] Initializing /data/dan-dickinson/141_mChCtrl_002.nd2: [testng] [2024-09-24 02:21:31,201] [pool-1-thread-10] Initializing /data/ylva/FRAP1.nd2: [testng] [2024-09-24 02:21:31,473] [pool-1-thread-4] Initializing /data/venu/N202-11 20x20.nd2: [testng] [2024-09-24 02:21:31,934] [pool-1-thread-5] Initializing /data/public/aryeh/rfp_h2a_cells_02.nd2: [testng] [2024-09-24 02:21:52,328] [pool-1-thread-10] Initializing /data/rehan/P128.nd2: [testng] [2024-09-24 02:21:54,792] [pool-1-thread-4] Initializing /data/plaissue/2channel-Zstack-withBinaryLayer.nd2: [testng] [2024-09-24 02:21:56,967] [pool-1-thread-4] Initializing /data/public/jonas/2.nd2: [testng] [2024-09-24 02:22:00,552] [pool-1-thread-2] Initializing /data/qa-7799/Patient 67 from 20130812.nd2: [testng] [2024-09-24 02:22:07,368] [pool-1-thread-10] Initializing /data/qa-9207/n1e 570-wisp2 670-cdh6 -2(good 1-11)_xy1.nd2: [testng] [2024-09-24 02:22:11,895] [pool-1-thread-10] Initializing /data/richard/KitWv#67.avi: [testng] [2024-09-24 02:22:19,508] [pool-1-thread-9] Initializing /data/public/jonas/512c/wtf_DIC.nd2: [testng] [2024-09-24 02:22:25,523] [pool-1-thread-9] Initializing /data/public/aryeh/but3_cont200-1.nd2: [testng] [2024-09-24 02:22:30,959] [pool-1-thread-4] Initializing /data/venu/nd-two_channel-2.nd2: [testng] [2024-09-24 02:22:36,793] [pool-1-thread-4] Initializing /data/helene/testseries1.nd2: [testng] [2024-09-24 02:22:42,731] [pool-1-thread-2] Initializing /data/qa-4206/1b-1.nd2: [testng] [2024-09-24 02:22:47,477] [pool-1-thread-2] Initializing /data/uli/2012_04_19_CHOegfr_03.nd2: [testng] [2024-09-24 02:22:49,502] [pool-1-thread-4] Initializing /data/venu/nd-two_channel-0.nd2: [testng] [2024-09-24 02:22:49,762] [pool-1-thread-2] Initializing /data/stefanie/nd026_xy0.nd2: [testng] [2024-09-24 02:22:52,059] [pool-1-thread-4] Initializing /data/qa-27812/Deconvolved_32Float.nd2: [testng] [2024-09-24 02:22:54,680] [pool-1-thread-2] Initializing /data/liang/1x4 good.nd2: [testng] [2024-09-24 02:22:56,258] [pool-1-thread-4] Initializing /data/stefanie/nd27.nd2: [testng] [2024-09-24 02:22:59,402] [pool-1-thread-4] Initializing /data/plaissue/4channel_Zseries_withROIlayer.nd2: [testng] [2024-09-24 02:23:01,007] [pool-1-thread-4] Initializing /data/pete/psf_bead_theoretical.nd2: [testng] [2024-09-24 02:23:01,685] [pool-1-thread-4] Initializing /data/aryeh/BY_GFP-Mup1_mCHERRY-VPH1_10-7-2012_Meytal-Waiss_XYZT_GOOD.nd2: [testng] [2024-09-24 02:23:03,472] [pool-1-thread-4] Initializing /data/venu/nd-two_channel-1.nd2: [testng] [2024-09-24 02:23:04,084] [pool-1-thread-7] Initializing /data/venu/N202-5 20x2.nd2: [testng] [2024-09-24 02:23:06,313] [pool-1-thread-7] Initializing /data/christophe/A1N1_Veh_2D_B4S.nd2: [testng] [2024-09-24 02:24:08,768] [pool-1-thread-2] Initializing /data/venu/seven_160807_control cells_4D.tif: [testng] [2024-09-24 02:24:10,179] [pool-1-thread-4] Initializing /data/venu/three_160807_control cells_4D.tif: [testng] [2024-09-24 02:24:10,965] [pool-1-thread-2] Initializing /data/michael/6timepoints 4channels.nd2: [testng] [2024-09-24 02:24:12,343] [pool-1-thread-9] Initializing /data/venu/five_160807_control cells_4D.tif: [testng] [2024-09-24 02:24:13,813] [pool-1-thread-4] Initializing /data/public/aryeh/multipoint.nd2: [testng] [2024-09-24 02:24:19,220] [pool-1-thread-9] Initializing /data/yanmei/snapcells-vps2.nd2: [testng] [2024-09-24 02:24:21,769] [pool-1-thread-10] Initializing /data/qa-7906/2591B1.jp2: [testng] [2024-09-24 02:24:24,287] [pool-1-thread-9] Initializing /data/qa-11064/t2_mp8_z4_ch3_.nd2: [testng] [2024-09-24 02:24:28,343] [pool-1-thread-2] Initializing /data/qa-11064/t1_mp8_z4_chOff_005.nd2: [testng] [2024-09-24 02:24:35,146] [pool-1-thread-2] Initializing /data/qa-28060/20191023-htirf-888.nd2: [testng] [2024-09-24 02:24:36,696] [pool-1-thread-9] Initializing /data/qa-10380/271120.nd2: [testng] [2024-09-24 02:24:38,322] [pool-1-thread-2] Initializing /data/helene/new_version_problem.nd2: [testng] [2024-09-24 02:24:39,890] [pool-1-thread-2] Initializing /data/michael/opened skewed - C=2.tif: [testng] [2024-09-24 02:24:40,961] [pool-1-thread-9] Initializing /data/public/aryeh/but3_cont2002.nd2: [testng] [2024-09-24 02:24:45,090] [pool-1-thread-2] Initializing /data/public/jonas/jonas_nd2Test/Exception_2.nd2: [testng] [2024-09-24 02:24:46,944] [pool-1-thread-2] Initializing /data/qa-10370/example_JPIKE.nd2: [testng] [2024-09-24 02:24:51,936] [pool-1-thread-10] Initializing /data/michael/frap0041 00X 1Xeyepiece 15sec Cy5 ICAM TIRF.nd2: [testng] [2024-09-24 02:24:56,563] [pool-1-thread-2] Initializing /data/karsten/100720104_TestglasSchott_MM63_C10h.nd2: [testng] [2024-09-24 02:24:58,583] [pool-1-thread-10] Initializing /data/kyle/F301.nd2: [testng] [2024-09-24 02:25:06,406] [pool-1-thread-4] Initializing /data/gh-3565/example_metadata001.nd2: [testng] [2024-09-24 02:25:07,538] [pool-1-thread-4] Initializing /data/qa-7536/SampleND2-ChrisL.nd2: [testng] [2024-09-24 02:25:14,495] [pool-1-thread-4] Initializing /data/michael/MCammer Nikon file opens in wrong order.nd2: [testng] [2024-09-24 02:25:18,433] [pool-1-thread-10] Initializing /data/tom/1024x1024.nd2: [testng] [2024-09-24 02:25:20,831] [pool-1-thread-10] Initializing /data/michael/mcammer BUT THIS FILE OPENS FINE.nd2: [testng] [2024-09-24 02:25:23,282] [pool-1-thread-5] Initializing /data/damir/Plate000_Well1_Seq0000.nd2: [testng] [2024-09-24 02:25:26,799] [pool-1-thread-10] Initializing /data/qa-17695/sample.nd2: [testng] [2024-09-24 02:25:28,097] [pool-1-thread-9] Initializing /data/public/jonas/100217_OD122_001.nd2: [testng] [2024-09-24 02:25:31,140] [pool-1-thread-10] Initializing /data/public/karl/sample_image.nd2: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 13091, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 48 minutes 40 seconds Finished: SUCCESS