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Started by upstream project "BIOFORMATS-test-repo" build number 209 originally caused by: Started by upstream project "Trigger" build number 235 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins7121402213522473123.sh + '[' ivision = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_33263_merge_ci -v /uod/idr/repos/curated/ivision:/data -v /uod/idr-scratch/merge-ci/curated/ivision:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 04:08:30,874 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 04:08:30,876 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 04:08:30,876 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:08:30,877 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:08:30,877 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 04:08:30,877 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 04:08:30,877 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 04:08:30,877 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:08:30,878 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:08:30,878 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 04:08:30,878 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 04:08:30,878 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 04:08:31,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 04:08:31,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 04:08:31,123 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 04:08:31,123 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 04:08:31,131 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 04:08:31,131 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 04:08:31,131 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 04:08:31,131 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 04:08:31,131 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 04:08:31,132 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 04:08:31,132 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 254 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-04 04:08:31,142] [main] java.version = 1.8.0_342 [testng] 04:08:31,145 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:08:31,145 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:08:31,189 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-04_04-08-31.log] [testng] 04:08:31,190 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-10-04 04:08:31,192] [main] testng.directory = /data [testng] [2024-10-04 04:08:31,192] [main] testng.configDirectory = /config [testng] [2024-10-04 04:08:31,204] [main] testng.multiplier = 1.0 [testng] [2024-10-04 04:08:31,204] [main] testng.in-memory = false [testng] [2024-10-04 04:08:31,204] [main] testng.allow-missing = false [testng] [2024-10-04 04:08:31,204] [main] user.language = en [testng] [2024-10-04 04:08:31,204] [main] user.country = ${user.country} [testng] [2024-10-04 04:08:31,204] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-04 04:08:33,512] [main] ---------------------------------------- [testng] [2024-10-04 04:08:33,513] [main] Total files: 17 [testng] [2024-10-04 04:08:33,513] [main] Scan time: 2.308 s (135 ms/file) [testng] [2024-10-04 04:08:33,513] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 17 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-04 04:08:35,559] [pool-1-thread-1] Initializing /data/jcb/200810162/mutBA plus bio.ipm: [testng] 04:08:35,560 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 04:08:35,560 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:08:35,560 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-04_04-08-35.log] [testng] 04:08:35,561 |-INFO in ch.qos.logback.core.sift.SiftProcessor@288c9c93 - End of configuration. [testng] [2024-10-04 04:08:35,706] [pool-1-thread-12] Initializing /data/jcb/200810162/wt ba no bio.ipm: [testng] 04:08:35,706 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 04:08:35,706 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:08:35,707 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-04_04-08-35.log] [testng] 04:08:35,707 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37447c4b - End of configuration. [testng] [2024-10-04 04:08:35,828] [pool-1-thread-11] Initializing /data/samples/16-bit 320x256x3.ipm: [testng] 04:08:35,828 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 04:08:35,828 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:08:35,829 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-04_04-08-35.log] [testng] 04:08:35,829 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c40181f - End of configuration. [testng] [2024-10-04 04:08:35,938] [pool-1-thread-10] Initializing /data/christopher/122308_I_MPT_4x-Test1.ipm: [testng] 04:08:35,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 04:08:35,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:08:35,939 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-04_04-08-35.log] [testng] 04:08:35,939 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31a22b60 - End of configuration. [testng] [2024-10-04 04:08:36,037] [pool-1-thread-9] Initializing /data/samples/24bit 300x200x3.ipm: [testng] 04:08:36,037 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 04:08:36,037 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:08:36,038 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-04_04-08-36.log] [testng] 04:08:36,039 |-INFO in ch.qos.logback.core.sift.SiftProcessor@cd9588c - End of configuration. [testng] [2024-10-04 04:08:36,162] [pool-1-thread-8] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).BAD.ipm: [testng] 04:08:36,162 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 04:08:36,162 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:08:36,163 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-04_04-08-36.log] [testng] 04:08:36,163 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56ad2329 - End of configuration. [testng] [2024-10-04 04:08:36,307] [pool-1-thread-7] Initializing /data/jcb/JCB 200905007 Fig 7B gfp center: [testng] 04:08:36,307 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 04:08:36,307 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:08:36,308 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-04_04-08-36.log] [testng] 04:08:36,308 |-INFO in ch.qos.logback.core.sift.SiftProcessor@214e0ab1 - End of configuration. [testng] [2024-10-04 04:08:36,424] [pool-1-thread-6] Initializing /data/jcb/200810162/wt BA plus bio.ipm: [testng] 04:08:36,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 04:08:36,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:08:36,425 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-04_04-08-36.log] [testng] 04:08:36,425 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c27cfd0 - End of configuration. [testng] [2024-10-04 04:08:36,515] [pool-1-thread-5] Initializing /data/christopher/Color48 Copy.ipm: [testng] 04:08:36,515 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 04:08:36,515 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:08:36,516 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-04_04-08-36.log] [testng] 04:08:36,516 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79e7f209 - End of configuration. [testng] [2024-10-04 04:08:36,599] [pool-1-thread-4] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).GOOD.ipm: [testng] 04:08:36,599 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 04:08:36,599 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:08:36,600 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-04_04-08-36.log] [testng] 04:08:36,600 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2656b5fb - End of configuration. [testng] [2024-10-04 04:08:36,715] [pool-1-thread-3] Initializing /data/nigel/CD48_75_24hrColor.ipm: [testng] 04:08:36,715 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 04:08:36,715 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:08:36,716 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-04_04-08-36.log] [testng] 04:08:36,716 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53909980 - End of configuration. [testng] [2024-10-04 04:08:36,790] [pool-1-thread-2] Initializing /data/jcb/200810162/mut BA no bio.ipm: [testng] 04:08:36,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 04:08:36,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:08:36,791 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-04_04-08-36.log] [testng] 04:08:36,791 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e781352 - End of configuration. [testng] [2024-10-04 04:08:39,021] [pool-1-thread-11] Initializing /data/christopher/122308_I_MPT_4x-test2.ipm: [testng] [2024-10-04 04:08:39,135] [pool-1-thread-9] Initializing /data/samples/08Bit 320x256xthree.ipm: [testng] [2024-10-04 04:08:39,255] [pool-1-thread-3] Initializing /data/samples/08Bit 320x256x1.ipm: [testng] [2024-10-04 04:08:39,361] [pool-1-thread-8] Initializing /data/samples/48bit 150x100x3.ipm: [testng] [2024-10-04 04:08:39,484] [pool-1-thread-4] Initializing /data/samples/16bit 320x256x1.ipm: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 901, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 14 seconds Finished: SUCCESS