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Started by upstream project "BIOFORMATS-test-repo" build number 215
originally caused by:
 Started by upstream project "Trigger" build number 242
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins1915810545211135748.sh
+ '[' jpeg2000 = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_34195_merge_ci -v /uod/idr/repos/curated/jpeg2000:/data -v /uod/idr-scratch/merge-ci/curated/jpeg2000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 06:30:08,991 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 06:30:08,992 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
   [testng] 06:30:08,992 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 06:30:08,993 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 06:30:08,994 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 06:30:08,994 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 06:30:08,994 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 06:30:08,994 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 06:30:08,995 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 06:30:08,995 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 06:30:08,995 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 06:30:08,996 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 06:30:09,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 06:30:09,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 06:30:09,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 06:30:09,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 06:30:09,179 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 06:30:09,179 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 06:30:09,179 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 06:30:09,179 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 06:30:09,179 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
   [testng] 06:30:09,180 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
   [testng] 06:30:09,181 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 186 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-10-09 06:30:09,189] [main] java.version = 17.0.2
   [testng] 06:30:09,192 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 06:30:09,192 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:30:09,230 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-09_06-30-09.log]
   [testng] 06:30:09,232 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
   [testng] [2024-10-09 06:30:09,233] [main] testng.directory = /data
   [testng] [2024-10-09 06:30:09,234] [main] testng.configDirectory = /config
   [testng] [2024-10-09 06:30:09,242] [main] testng.multiplier = 1.0
   [testng] [2024-10-09 06:30:09,242] [main] testng.in-memory = false
   [testng] [2024-10-09 06:30:09,243] [main] testng.allow-missing = false
   [testng] [2024-10-09 06:30:09,243] [main] user.language = en
   [testng] [2024-10-09 06:30:09,243] [main] user.country = ${user.country}
   [testng] [2024-10-09 06:30:09,243] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-10-09 06:30:43,730] [main] ----------------------------------------
   [testng] [2024-10-09 06:30:43,731] [main] Total files: 31
   [testng] [2024-10-09 06:30:43,731] [main] Scan time: 34.487 s (1112 ms/file)
   [testng] [2024-10-09 06:30:43,731] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 30 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-10-09 06:31:21,869] [pool-1-thread-1] Initializing /data/mike/LCM-4-3-color-cleaned-LOCI.tiff: 
   [testng] 06:31:21,869 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 06:31:21,869 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:31:21,870 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-09_06-31-21.log]
   [testng] 06:31:21,870 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5dfc11cb - End of configuration.
   [testng] [2024-10-09 06:31:24,015] [pool-1-thread-12] Initializing /data/misc/clown-rgb.jp2: 
   [testng] 06:31:24,016 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 06:31:24,016 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:31:24,016 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-09_06-31-24.log]
   [testng] 06:31:24,017 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73e1a6e0 - End of configuration.
   [testng] [2024-10-09 06:31:24,910] [pool-1-thread-11] Initializing /data/venu/Multichannel 3.jp2: 
   [testng] 06:31:24,910 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 06:31:24,910 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:31:24,911 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-09_06-31-24.log]
   [testng] 06:31:24,911 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32e6a04d - End of configuration.
   [testng] [2024-10-09 06:31:25,842] [pool-1-thread-10] Initializing /data/mario/b0bCDME-0007_wB05_s1_z1_t1_cGFP_u001.jp2: 
   [testng] 06:31:25,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 06:31:25,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:31:25,842 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-09_06-31-25.log]
   [testng] 06:31:25,843 |-INFO in ch.qos.logback.core.sift.SiftProcessor@140cedc1 - End of configuration.
   [testng] [2024-10-09 06:31:26,861] [pool-1-thread-9] Initializing /data/vikram/Captured 3.jp2: 
   [testng] 06:31:26,861 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 06:31:26,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:31:26,862 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-09_06-31-26.log]
   [testng] 06:31:26,862 |-INFO in ch.qos.logback.core.sift.SiftProcessor@455827b1 - End of configuration.
   [testng] [2024-10-09 06:31:28,156] [pool-1-thread-8] Initializing /data/mike/LCM4-1-cr10-cleaned.jp2: 
   [testng] 06:31:28,156 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 06:31:28,156 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:31:28,157 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-09_06-31-28.log]
   [testng] 06:31:28,157 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31cee426 - End of configuration.
   [testng] [2024-10-09 06:31:29,231] [pool-1-thread-7] Initializing /data/david/cy5-tph.jp2: 
   [testng] 06:31:29,231 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 06:31:29,231 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:31:29,232 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-09_06-31-29.log]
   [testng] 06:31:29,232 |-INFO in ch.qos.logback.core.sift.SiftProcessor@582e7b1e - End of configuration.
   [testng] [2024-10-09 06:31:30,048] [pool-1-thread-6] Initializing /data/big-images/2kx2k.jpf: 
   [testng] 06:31:30,049 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 06:31:30,049 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:31:30,050 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-09_06-31-30.log]
   [testng] 06:31:30,050 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2704605 - End of configuration.
   [testng] [2024-10-09 06:31:30,874] [pool-1-thread-5] Initializing /data/angel/052_L050071_56_x2hv.jp2: 
   [testng] 06:31:30,874 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 06:31:30,874 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:31:30,874 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-09_06-31-30.log]
   [testng] 06:31:30,875 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ade598c - End of configuration.
   [testng] [2024-10-09 06:31:31,946] [pool-1-thread-4] Initializing /data/mike/LCM-4-3-color-cleaned.tiff: 
   [testng] 06:31:31,946 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 06:31:31,947 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:31:31,947 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-09_06-31-31.log]
   [testng] 06:31:31,948 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55de1ef8 - End of configuration.
   [testng] [2024-10-09 06:31:34,747] [pool-1-thread-3] Initializing /data/angel/002_L050071_32_01_09_x2.jp2: 
   [testng] 06:31:34,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 06:31:34,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:31:34,748 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-09_06-31-34.log]
   [testng] 06:31:34,748 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a0155d7 - End of configuration.
   [testng] [2024-10-09 06:31:35,744] [pool-1-thread-2] Initializing /data/mike/LCM-4-3-color-cleaned.jp2: 
   [testng] 06:31:35,744 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 06:31:35,744 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:31:35,745 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-09_06-31-35.log]
   [testng] 06:31:35,745 |-INFO in ch.qos.logback.core.sift.SiftProcessor@328431f9 - End of configuration.
   [testng] [2024-10-09 06:31:43,388] [pool-1-thread-12] Initializing /data/vikram/Captured 2.jp2: 
   [testng] [2024-10-09 06:31:44,391] [pool-1-thread-9] Initializing /data/david/multichannel-3d-non-MBF-trial-2.jpx: 
   [testng] [2024-10-09 06:31:48,262] [pool-1-thread-1] Initializing /data/aryeh/flour 12.jp2: 
   [testng] [2024-10-09 06:31:49,340] [pool-1-thread-4] Initializing /data/david/multichannel-2d test.jp2: 
   [testng] [2024-10-09 06:31:50,223] [pool-1-thread-8] Initializing /data/kraig/head.jp2: 
   [testng] [2024-10-09 06:31:51,165] [pool-1-thread-10] Initializing /data/big-images/8kx8k.jpf: 
   [testng] [2024-10-09 06:31:54,267] [pool-1-thread-6] Initializing /data/frans/flower.jp2: 
   [testng] [2024-10-09 06:31:55,165] [pool-1-thread-12] Initializing /data/vikram/Captured 1.jp2: 
   [testng] [2024-10-09 06:31:58,637] [pool-1-thread-11] Initializing /data/big-images/4kx4k.jpf: 
   [testng] [2024-10-09 06:31:59,507] [pool-1-thread-3] Initializing /data/venu/Multichannel 3a.jpg: 
   [testng] [2024-10-09 06:31:59,760] [pool-1-thread-5] Initializing /data/david/C1R1_FOS.jp2: 
   [testng] [2024-10-09 06:32:01,598] [pool-1-thread-8] Initializing /data/david/000000_000001.jpx: 
   [testng] [2024-10-09 06:32:02,509] [pool-1-thread-1] Initializing /data/david/multichannel-3d-MBF-type.jpx: 
   [testng] [2024-10-09 06:32:03,795] [pool-1-thread-2] Initializing /data/vikram/Captured 4.jp2: 
   [testng] [2024-10-09 06:32:07,194] [pool-1-thread-12] Initializing /data/misc/clown-rgb.jbig: 
   [testng] [2024-10-09 06:32:09,925] [pool-1-thread-3] Initializing /data/vikram/Captured 5.jp2: 
   [testng] [2024-10-09 06:32:14,835] [pool-1-thread-2] Initializing /data/david/multichannel-2d test-non MBF-type.jp2: 
   [testng] [2024-10-09 06:32:18,082] [pool-1-thread-3] Initializing /data/misc/clown-rgb.jpc: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1590, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 7 minutes 31 seconds
Finished: SUCCESS