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Started by upstream project "BIOFORMATS-test-repo" build number 217 originally caused by: Started by upstream project "Trigger" build number 244 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins11641204262721712441.sh + '[' afi = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_34448_merge_ci -v /uod/idr/repos/curated/afi:/data -v /uod/idr-scratch/merge-ci/curated/afi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 04:29:34,832 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 04:29:34,834 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 04:29:34,834 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:29:34,836 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:29:34,836 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 04:29:34,836 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 04:29:34,837 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 04:29:34,837 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:29:34,837 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:29:34,838 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 04:29:34,838 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 04:29:34,838 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 04:29:35,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 04:29:35,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 04:29:35,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 04:29:35,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 04:29:35,096 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 04:29:35,097 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 04:29:35,097 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 04:29:35,097 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 04:29:35,097 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 04:29:35,098 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 04:29:35,098 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 261 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-11 04:29:35,107] [main] java.version = 1.8.0_342 [testng] 04:29:35,111 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:29:35,111 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:29:35,170 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-11_04-29-35.log] [testng] 04:29:35,172 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-10-11 04:29:35,174] [main] testng.directory = /data [testng] [2024-10-11 04:29:35,174] [main] testng.configDirectory = /config [testng] [2024-10-11 04:29:35,186] [main] testng.multiplier = 1.0 [testng] [2024-10-11 04:29:35,186] [main] testng.in-memory = false [testng] [2024-10-11 04:29:35,186] [main] testng.allow-missing = false [testng] [2024-10-11 04:29:35,186] [main] user.language = en [testng] [2024-10-11 04:29:35,186] [main] user.country = ${user.country} [testng] [2024-10-11 04:29:35,186] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-11 04:29:43,835] [main] ---------------------------------------- [testng] [2024-10-11 04:29:43,835] [main] Total files: 16 [testng] [2024-10-11 04:29:43,835] [main] Scan time: 8.649 s (540 ms/file) [testng] [2024-10-11 04:29:43,835] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 15 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-11 04:30:25,408] [pool-1-thread-1] Initializing /data/samples/5351.afi: [testng] 04:30:25,409 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 04:30:25,409 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:30:25,409 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-11_04-30-25.log] [testng] 04:30:25,410 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39da9445 - End of configuration. [testng] [2024-10-11 04:30:27,288] [pool-1-thread-12] Initializing /data/samples/5440.afi: [testng] 04:30:27,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 04:30:27,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:30:27,289 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-11_04-30-27.log] [testng] 04:30:27,289 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20de349 - End of configuration. [testng] [2024-10-11 04:30:28,588] [pool-1-thread-11] Initializing /data/samples/5407.afi: [testng] 04:30:28,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 04:30:28,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:30:28,589 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-11_04-30-28.log] [testng] 04:30:28,590 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4aeb56f2 - End of configuration. [testng] [2024-10-11 04:30:30,064] [pool-1-thread-10] Initializing /data/samples/5365.afi: [testng] 04:30:30,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 04:30:30,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:30:30,065 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-11_04-30-30.log] [testng] 04:30:30,065 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14b0f5c4 - End of configuration. [testng] [2024-10-11 04:30:31,808] [pool-1-thread-9] Initializing /data/samples/5339.afi: [testng] 04:30:31,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 04:30:31,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:30:31,810 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-11_04-30-31.log] [testng] 04:30:31,810 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15f3344e - End of configuration. [testng] [2024-10-11 04:30:33,531] [pool-1-thread-8] Initializing /data/samples/5343.afi: [testng] 04:30:33,531 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 04:30:33,532 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:30:33,532 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-11_04-30-33.log] [testng] 04:30:33,532 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a47065c - End of configuration. [testng] [2024-10-11 04:30:34,885] [pool-1-thread-7] Initializing /data/samples/5347.afi: [testng] 04:30:34,885 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 04:30:34,885 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:30:34,885 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-11_04-30-34.log] [testng] 04:30:34,886 |-INFO in ch.qos.logback.core.sift.SiftProcessor@421a1c8e - End of configuration. [testng] [2024-10-11 04:30:37,183] [pool-1-thread-6] Initializing /data/samples/5383.afi: [testng] 04:30:37,183 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 04:30:37,183 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:30:37,183 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-11_04-30-37.log] [testng] 04:30:37,184 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ebe628a - End of configuration. [testng] [2024-10-11 04:30:39,149] [pool-1-thread-5] Initializing /data/samples/5400.afi: [testng] 04:30:39,150 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 04:30:39,150 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:30:39,150 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-11_04-30-39.log] [testng] 04:30:39,151 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67a5403b - End of configuration. [testng] [2024-10-11 04:30:40,775] [pool-1-thread-4] Initializing /data/samples/5371.afi: [testng] 04:30:40,775 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 04:30:40,775 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:30:40,775 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-11_04-30-40.log] [testng] 04:30:40,776 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f280a62 - End of configuration. [testng] [2024-10-11 04:30:42,396] [pool-1-thread-3] Initializing /data/samples/5446.afi: [testng] 04:30:42,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 04:30:42,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:30:42,397 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-11_04-30-42.log] [testng] 04:30:42,397 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7340eab6 - End of configuration. [testng] [2024-10-11 04:30:44,225] [pool-1-thread-2] Initializing /data/samples/5306.afi: [testng] 04:30:44,225 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 04:30:44,225 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:30:44,226 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-11_04-30-44.log] [testng] 04:30:44,226 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31ec6df - End of configuration. [testng] [2024-10-11 04:31:32,012] [pool-1-thread-1] Initializing /data/samples/5387.afi: [testng] [2024-10-11 04:31:42,486] [pool-1-thread-3] Initializing /data/samples/5358.afi: [testng] [2024-10-11 04:31:44,139] [pool-1-thread-5] Initializing /data/samples/5414.afi: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 795, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 3 minutes 14 seconds Finished: SUCCESS