Skip to content
[Jenkins]Jenkins
log in

Console Output

Started by upstream project "BIOFORMATS-test-repo" build number 244
originally caused by:
 Started by upstream project "Trigger" build number 268
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins17230872892685002003.sh
+ '[' afi = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_38413_merge_ci -v /uod/idr/repos/curated/afi:/data -v /uod/idr-scratch/merge-ci/curated/afi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 01:33:07,606 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 01:33:07,608 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
   [testng] 01:33:07,608 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:33:07,608 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:33:07,609 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 01:33:07,609 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 01:33:07,609 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 01:33:07,609 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:33:07,610 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:33:07,610 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 01:33:07,611 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 01:33:07,611 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 01:33:07,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:33:07,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:33:07,795 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:33:07,795 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:33:07,801 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:33:07,801 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:33:07,802 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:33:07,802 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:33:07,802 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
   [testng] 01:33:07,803 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
   [testng] 01:33:07,803 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 193 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-11-03 01:33:07,812] [main] java.version = 17.0.2
   [testng] 01:33:07,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:33:07,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:33:07,920 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-03_01-33-07.log]
   [testng] 01:33:07,921 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
   [testng] [2024-11-03 01:33:07,923] [main] testng.directory = /data
   [testng] [2024-11-03 01:33:07,923] [main] testng.configDirectory = /config
   [testng] [2024-11-03 01:33:07,932] [main] testng.multiplier = 1.0
   [testng] [2024-11-03 01:33:07,933] [main] testng.in-memory = false
   [testng] [2024-11-03 01:33:07,933] [main] testng.allow-missing = false
   [testng] [2024-11-03 01:33:07,933] [main] user.language = en
   [testng] [2024-11-03 01:33:07,933] [main] user.country = ${user.country}
   [testng] [2024-11-03 01:33:07,933] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-11-03 01:33:09,824] [main] ----------------------------------------
   [testng] [2024-11-03 01:33:09,824] [main] Total files: 16
   [testng] [2024-11-03 01:33:09,825] [main] Scan time: 1.891 s (118 ms/file)
   [testng] [2024-11-03 01:33:09,825] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 15 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-11-03 01:33:26,114] [pool-1-thread-1] Initializing /data/samples/5440.afi: 
   [testng] 01:33:26,114 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 01:33:26,114 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:33:26,115 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-03_01-33-26.log]
   [testng] 01:33:26,116 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7455dc02 - End of configuration.
   [testng] [2024-11-03 01:33:26,717] [pool-1-thread-12] Initializing /data/samples/5339.afi: 
   [testng] 01:33:26,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 01:33:26,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:33:26,718 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-03_01-33-26.log]
   [testng] 01:33:26,718 |-INFO in ch.qos.logback.core.sift.SiftProcessor@795acb19 - End of configuration.
   [testng] [2024-11-03 01:33:27,322] [pool-1-thread-11] Initializing /data/samples/5383.afi: 
   [testng] 01:33:27,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 01:33:27,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:33:27,323 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-03_01-33-27.log]
   [testng] 01:33:27,323 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2375757b - End of configuration.
   [testng] [2024-11-03 01:33:27,667] [pool-1-thread-10] Initializing /data/samples/5306.afi: 
   [testng] 01:33:27,667 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 01:33:27,667 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:33:27,668 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-03_01-33-27.log]
   [testng] 01:33:27,668 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40c419c8 - End of configuration.
   [testng] [2024-11-03 01:33:28,237] [pool-1-thread-9] Initializing /data/samples/5351.afi: 
   [testng] 01:33:28,237 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 01:33:28,237 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:33:28,238 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-03_01-33-28.log]
   [testng] 01:33:28,238 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c2e0899 - End of configuration.
   [testng] [2024-11-03 01:33:28,797] [pool-1-thread-8] Initializing /data/samples/5400.afi: 
   [testng] 01:33:28,798 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 01:33:28,798 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:33:28,798 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-03_01-33-28.log]
   [testng] 01:33:28,799 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f3da597 - End of configuration.
   [testng] [2024-11-03 01:33:29,371] [pool-1-thread-7] Initializing /data/samples/5387.afi: 
   [testng] 01:33:29,371 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 01:33:29,371 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:33:29,372 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-03_01-33-29.log]
   [testng] 01:33:29,373 |-INFO in ch.qos.logback.core.sift.SiftProcessor@763bce86 - End of configuration.
   [testng] [2024-11-03 01:33:29,884] [pool-1-thread-6] Initializing /data/samples/5365.afi: 
   [testng] 01:33:29,884 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 01:33:29,884 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:33:29,885 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-03_01-33-29.log]
   [testng] 01:33:29,885 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15476813 - End of configuration.
   [testng] [2024-11-03 01:33:30,364] [pool-1-thread-5] Initializing /data/samples/5407.afi: 
   [testng] 01:33:30,364 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 01:33:30,364 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:33:30,365 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-03_01-33-30.log]
   [testng] 01:33:30,366 |-INFO in ch.qos.logback.core.sift.SiftProcessor@458de70b - End of configuration.
   [testng] [2024-11-03 01:33:30,876] [pool-1-thread-4] Initializing /data/samples/5343.afi: 
   [testng] 01:33:30,877 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 01:33:30,877 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:33:30,877 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-03_01-33-30.log]
   [testng] 01:33:30,878 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5706ea00 - End of configuration.
   [testng] [2024-11-03 01:33:31,325] [pool-1-thread-3] Initializing /data/samples/5371.afi: 
   [testng] 01:33:31,326 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 01:33:31,326 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:33:31,326 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-03_01-33-31.log]
   [testng] 01:33:31,327 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67b43042 - End of configuration.
   [testng] [2024-11-03 01:33:31,753] [pool-1-thread-2] Initializing /data/samples/5347.afi: 
   [testng] 01:33:31,753 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 01:33:31,753 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:33:31,754 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-03_01-33-31.log]
   [testng] 01:33:31,754 |-INFO in ch.qos.logback.core.sift.SiftProcessor@bbc398d - End of configuration.
   [testng] [2024-11-03 01:34:16,972] [pool-1-thread-10] Initializing /data/samples/5358.afi: 
   [testng] [2024-11-03 01:34:23,650] [pool-1-thread-6] Initializing /data/samples/5446.afi: 
   [testng] [2024-11-03 01:34:24,767] [pool-1-thread-8] Initializing /data/samples/5414.afi: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 795, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 2 minutes 9 seconds
Finished: SUCCESS