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Started by upstream project "BIOFORMATS-test-repo" build number 266 originally caused by: Started by upstream project "Trigger" build number 289 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins8562213445637250808.sh + '[' nd2 = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_41998_merge_ci -v /uod/idr/repos/curated/nd2:/data -v /uod/idr-scratch/merge-ci/curated/nd2:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:01:20,663 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:01:20,665 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 01:01:20,665 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:01:20,665 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:01:20,666 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:01:20,666 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:01:20,666 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:01:20,666 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:01:20,667 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:01:20,667 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:01:20,668 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:01:20,668 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:01:20,824 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:01:20,824 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:01:20,852 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:01:20,852 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:01:20,857 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:01:20,857 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:01:20,857 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:01:20,858 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:01:20,858 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 01:01:20,859 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 01:01:20,859 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 192 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-24 01:01:20,867] [main] java.version = 17.0.2 [testng] 01:01:20,870 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:01:20,870 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:01:20,909 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-24_01-01-20.log] [testng] 01:01:20,910 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-11-24 01:01:20,912] [main] testng.directory = /data [testng] [2024-11-24 01:01:20,912] [main] testng.configDirectory = /config [testng] [2024-11-24 01:01:20,920] [main] testng.multiplier = 1.0 [testng] [2024-11-24 01:01:20,921] [main] testng.in-memory = false [testng] [2024-11-24 01:01:20,921] [main] testng.allow-missing = false [testng] [2024-11-24 01:01:20,921] [main] user.language = en [testng] [2024-11-24 01:01:20,921] [main] user.country = ${user.country} [testng] [2024-11-24 01:01:20,921] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-24 01:05:16,112] [main] ---------------------------------------- [testng] [2024-11-24 01:05:16,113] [main] Total files: 275 [testng] [2024-11-24 01:05:16,113] [main] Scan time: 235.191 s (855 ms/file) [testng] [2024-11-24 01:05:16,113] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 247 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-24 01:18:11,445] [pool-1-thread-1] Initializing /data/michael/MCammer Nikon file opens in wrong order.nd2: [testng] 01:18:11,446 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:18:11,446 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:18:11,447 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-24_01-18-11.log] [testng] 01:18:11,447 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2510a4b3 - End of configuration. [testng] [2024-11-24 01:18:13,564] [pool-1-thread-12] Initializing /data/michael/metadata only reported for last channel.nd2: [testng] 01:18:13,564 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:18:13,564 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:18:13,565 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-24_01-18-13.log] [testng] 01:18:13,566 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d26e503 - End of configuration. [testng] [2024-11-24 01:18:14,961] [pool-1-thread-11] Initializing /data/qa-29438/chip1_channel1_each-pixel.nd2: [testng] 01:18:14,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:18:14,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:18:14,963 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-24_01-18-14.log] [testng] 01:18:14,963 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f1442e5 - End of configuration. [testng] [2024-11-24 01:18:16,187] [pool-1-thread-10] Initializing /data/venu/eight_160807_control cells_4D.tif: [testng] 01:18:16,188 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:18:16,188 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:18:16,189 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-24_01-18-16.log] [testng] 01:18:16,189 |-INFO in ch.qos.logback.core.sift.SiftProcessor@470bc734 - End of configuration. [testng] [2024-11-24 01:18:18,532] [pool-1-thread-9] Initializing /data/michael/Opens ok with LOCI.nd2: [testng] 01:18:18,532 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:18:18,532 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:18:18,533 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-24_01-18-18.log] [testng] 01:18:18,533 |-INFO in ch.qos.logback.core.sift.SiftProcessor@783904c5 - End of configuration. [testng] [2024-11-24 01:18:19,849] [pool-1-thread-8] Initializing /data/qa-4196/120123 10h timelapse after incubator set up 1xy 1t.nd2: [testng] 01:18:19,850 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:18:19,850 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:18:19,850 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-24_01-18-19.log] [testng] 01:18:19,851 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2965cd1 - End of configuration. [testng] [2024-11-24 01:18:21,127] [pool-1-thread-7] Initializing /data/qa-7799/Patient 67 from 20130812.nd2: [testng] 01:18:21,127 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:18:21,127 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:18:21,128 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-24_01-18-21.log] [testng] 01:18:21,128 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f6d3abd - End of configuration. [testng] [2024-11-24 01:18:22,477] [pool-1-thread-6] Initializing /data/strand/Serie040.nd2: [testng] 01:18:22,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:18:22,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:18:22,479 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-24_01-18-22.log] [testng] 01:18:22,479 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f2fcc1c - End of configuration. [testng] [2024-11-24 01:18:24,167] [pool-1-thread-5] Initializing /data/qa-17099/upSIAPdownNT002.nd2: [testng] 01:18:24,167 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:18:24,167 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:18:24,168 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-24_01-18-24.log] [testng] 01:18:24,168 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42f5a7a9 - End of configuration. [testng] [2024-11-24 01:18:25,804] [pool-1-thread-4] Initializing /data/public/aryeh/multipoint.nd2: [testng] 01:18:25,804 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:18:25,804 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:18:25,805 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-24_01-18-25.log] [testng] 01:18:25,805 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19ed7d29 - End of configuration. [testng] [2024-11-24 01:18:27,695] [pool-1-thread-3] Initializing /data/gaurav/A1.nd2: [testng] 01:18:27,695 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:18:27,695 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:18:27,696 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-24_01-18-27.log] [testng] 01:18:27,696 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55efbd70 - End of configuration. [testng] [2024-11-24 01:18:29,063] [pool-1-thread-2] Initializing /data/qa-7906/2591A1.jp2: [testng] 01:18:29,063 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:18:29,063 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:18:29,064 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-24_01-18-29.log] [testng] 01:18:29,065 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a264ecd - End of configuration. [testng] [2024-11-24 01:18:41,008] [pool-1-thread-11] Initializing /data/colin/20110729_beads_001.nd2: [testng] [2024-11-24 01:18:43,859] [pool-1-thread-8] Initializing /data/venu/nd-three_channel-6.nd2: [testng] [2024-11-24 01:18:45,350] [pool-1-thread-9] Initializing /data/kevin/100nm_coat_1.nd2: [testng] [2024-11-24 01:18:47,179] [pool-1-thread-3] Initializing /data/public/aryeh/por003.nd2: [testng] [2024-11-24 01:18:48,480] [pool-1-thread-5] Initializing /data/qa-27812/Deconvolved_32Float.nd2: [testng] [2024-11-24 01:18:49,747] [pool-1-thread-12] Initializing /data/colin/20110729_beads_001_xy1.nd2: [testng] [2024-11-24 01:18:51,049] [pool-1-thread-6] Initializing /data/qa-7983/control_test_200314001.nd2: [testng] [2024-11-24 01:18:53,868] [pool-1-thread-10] Initializing /data/michael/opens_ok.nd2: [testng] [2024-11-24 01:18:59,254] [pool-1-thread-1] Initializing /data/brian/MDCK002.nd2: [testng] [2024-11-24 01:19:03,410] [pool-1-thread-5] Initializing /data/marek/NIS4_fails_to_open_correctly.nd2: [testng] [2024-11-24 01:19:05,933] [pool-1-thread-8] Initializing /data/public/jonas/header_test2.nd2: [testng] [2024-11-24 01:19:07,265] [pool-1-thread-12] Initializing /data/david/NDSequence013.nd2: [testng] [2024-11-24 01:19:08,552] [pool-1-thread-3] Initializing /data/pete/psf_bead_theoretical.nd2: [testng] [2024-11-24 01:19:09,749] [pool-1-thread-11] Initializing /data/stefanie/nd026_xy1.nd2: [testng] [2024-11-24 01:19:10,962] [pool-1-thread-6] Initializing /data/jcb/201101064/Fig 8B imp beta-BPM MaxIP.nd2: [testng] [2024-11-24 01:19:12,393] [pool-1-thread-2] Initializing /data/michael/TEMPmcammer.nd2: [testng] [2024-11-24 01:19:14,034] [pool-1-thread-9] Initializing /data/qa-7454/Dapi PFA Eukitt 1r 001.nd2: [testng] [2024-11-24 01:19:16,841] [pool-1-thread-4] Initializing /data/venu/two_160807_control cells_4D.tif: [testng] [2024-11-24 01:19:21,763] [pool-1-thread-1] Initializing /data/public/aryeh/but3_cont2002.nd2: [testng] [2024-11-24 01:19:23,129] [pool-1-thread-7] Initializing /data/sara/Ex9 ALADIN WT KO KI 31_07_2013.nd2: [testng] [2024-11-24 01:19:25,289] [pool-1-thread-10] Initializing /data/public/jonas/qa-7534/130606_JCC719_003.nd2: [testng] [2024-11-24 01:19:27,069] [pool-1-thread-5] Initializing /data/colin/20110729_beads_001_xy2.nd2: [testng] [2024-11-24 01:19:28,419] [pool-1-thread-3] Initializing /data/jason/CapturedBF2.nd2: [testng] [2024-11-24 01:19:29,692] [pool-1-thread-11] Initializing /data/dan/120109_test.nd2: [testng] [2024-11-24 01:19:30,873] [pool-1-thread-12] Initializing /data/karsten/100720104_TestglasSchott_MM63_C16h_SYTO.nd2: [testng] [2024-11-24 01:19:32,117] [pool-1-thread-8] Initializing /data/stephen/LOCI_screen_dump.jpg: [testng] [2024-11-24 01:19:36,649] [pool-1-thread-6] Initializing /data/tom/512x512x11 1um step.nd2: [testng] [2024-11-24 01:19:39,612] [pool-1-thread-2] Initializing /data/jennet/2D001_crop.nd2: [testng] [2024-11-24 01:19:41,036] [pool-1-thread-9] Initializing /data/michael/mcammer BUT THIS FILE OPENS FINE.nd2: [testng] [2024-11-24 01:19:42,636] [pool-1-thread-8] Initializing /data/dan-dickinson/141_mChCtrl_002.nd2: [testng] [2024-11-24 01:19:44,001] [pool-1-thread-4] Initializing /data/qa-29043/Actin-Polymerization-10min-2s.nd2: [testng] [2024-11-24 01:19:45,328] [pool-1-thread-3] Initializing /data/chris/228 and 340.nd2: [testng] [2024-11-24 01:19:46,978] [pool-1-thread-11] Initializing /data/josh/072007h.nd2: [testng] [2024-11-24 01:19:48,164] [pool-1-thread-10] Initializing /data/venu/nd-two_channel-2.nd2: [testng] [2024-11-24 01:19:49,518] [pool-1-thread-5] Initializing /data/matt/Final merge.nd2: [testng] [2024-11-24 01:19:55,179] [pool-1-thread-6] Initializing /data/leon/WellA1_Seq0000.nd2: [testng] [2024-11-24 01:19:58,333] [pool-1-thread-2] Initializing /data/public/aryeh/b16_pdtB+y50__crop.nd2: [testng] [2024-11-24 01:20:00,904] [pool-1-thread-8] Initializing /data/imagesc-76438/Slide2-20-1_Region0000_ChannelBrightfield_Seq0002.nd2: [testng] [2024-11-24 01:20:05,810] [pool-1-thread-11] Initializing /data/imagesc-76438/Slide2-20-1_Region0001_ChannelBrightfield_Seq0003.nd2: [testng] [2024-11-24 01:20:10,579] [pool-1-thread-9] Initializing /data/kevin/test3.nd2: [testng] [2024-11-24 01:20:12,144] [pool-1-thread-4] Initializing /data/public/aryeh/rfp_h2a_cells_02.nd2: [testng] [2024-11-24 01:20:20,097] [pool-1-thread-5] Initializing /data/michael/MCammer Nikon file that wont open.nd2: [testng] [2024-11-24 01:20:21,351] [pool-1-thread-10] Initializing /data/fiji-655/01.nd2: [testng] [2024-11-24 01:20:22,607] [pool-1-thread-1] Initializing /data/public/jonas/header_test1.nd2: [testng] [2024-11-24 01:20:23,929] [pool-1-thread-3] Initializing /data/public/jonas/divisionByZero/290110.tranMgc005cr.nd2: [testng] [2024-11-24 01:20:33,481] [pool-1-thread-7] Initializing /data/unknown_fiji_upload/Day_2_A4_10x_Fluor_Z_Stack.nd2: [testng] [2024-11-24 01:20:34,686] [pool-1-thread-6] Initializing /data/yanmei/snapcells-vps2.nd2: [testng] [2024-11-24 01:20:36,058] [pool-1-thread-10] Initializing /data/katherina/120312_488HP_Convallaria nueva.nd2: [testng] [2024-11-24 01:20:37,514] [pool-1-thread-9] Initializing /data/qa-28060/20191023-htirf-888.nd2: [testng] [2024-11-24 01:20:38,953] [pool-1-thread-5] Initializing /data/christian/CW002_3_rfp.nd2: [testng] [2024-11-24 01:20:40,402] [pool-1-thread-1] Initializing /data/qa-4958/556_t2.nd2: [testng] [2024-11-24 01:20:43,576] [pool-1-thread-12] Initializing /data/hallie/RNAi Plate 4.nd2: [testng] [2024-11-24 01:20:45,056] [pool-1-thread-3] Initializing /data/public/aryeh/4_2_1_cont_NoMR001.nd2: [testng] [2024-11-24 01:20:56,201] [pool-1-thread-5] Initializing /data/qa-11064/t2_mp8_z4_ch3_.nd2: [testng] [2024-11-24 01:20:57,783] [pool-1-thread-7] Initializing /data/qa-7906/2591B1.jp2: [testng] [2024-11-24 01:20:59,367] [pool-1-thread-6] Initializing 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[2024-11-24 01:21:50,899] [pool-1-thread-6] Initializing /data/public/jonas/control002.nd2: [testng] [2024-11-24 01:21:56,165] [pool-1-thread-7] Initializing /data/qa-7303/CTR_012.nd2: [testng] [2024-11-24 01:21:58,544] [pool-1-thread-1] Initializing /data/kevin/sfeertjes 100 nm 10 000x 15p (1).nd2: [testng] [2024-11-24 01:22:00,649] [pool-1-thread-9] Initializing /data/public/jonas/3.nd2: [testng] [2024-11-24 01:22:27,555] [pool-1-thread-3] Initializing /data/public/jonas/JJ1473_control_24h/JJ1473_control_24h_03.nd2: [testng] [2024-11-24 01:22:29,477] [pool-1-thread-4] Initializing /data/qa-29634/20201007_2_OCT4DBD-Halo_PA64625nM_1kframe_tail_7ms_40pert_008.nd2: [testng] [2024-11-24 01:22:30,822] [pool-1-thread-6] Initializing /data/stephen/Cody_Temp_Copy_crop.nd2: [testng] [2024-11-24 01:22:36,559] [pool-1-thread-1] Initializing /data/jcb/201101064/Fig 8B imp beta-BPN MaxIP.nd2: [testng] [2024-11-24 01:22:38,453] [pool-1-thread-10] Initializing /data/cameron/CamND2.nd2: [testng] [2024-11-24 01:22:39,694] [pool-1-thread-7] Initializing /data/michael/10um skewed.nd2: [testng] [2024-11-24 01:22:41,433] [pool-1-thread-4] Initializing /data/qa-29006/Voltron_Test004.nd2: [testng] [2024-11-24 01:22:43,664] [pool-1-thread-6] Initializing /data/venu/nd-two_channel-1.nd2: [testng] [2024-11-24 01:22:45,114] [pool-1-thread-3] Initializing /data/pki/15July2011 ImClone multiwell test file.nd2: [testng] [2024-11-24 01:22:50,285] [pool-1-thread-10] Initializing /data/public/maxime/BF007.nd2: [testng] [2024-11-24 01:22:51,683] [pool-1-thread-1] Initializing /data/richard/KitWv67-72.nd2: [testng] [2024-11-24 01:22:56,682] [pool-1-thread-4] Initializing /data/helene/testseries1.nd2: [testng] [2024-11-24 01:22:57,956] [pool-1-thread-7] Initializing /data/imagesc-76438/Slide2-20-2_ChannelBrightfield_Seq0009.nd2: [testng] [2024-11-24 01:22:59,150] [pool-1-thread-3] Initializing /data/tom/1024x1024.nd2: [testng] [2024-11-24 01:23:00,408] [pool-1-thread-6] Initializing 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[pool-1-thread-4] Initializing /data/venu/nd-two_channel-0.nd2: [testng] [2024-11-24 01:24:48,622] [pool-1-thread-8] Initializing /data/venu/nd-three_channel-3.nd2: [testng] [2024-11-24 01:24:50,817] [pool-1-thread-1] Initializing /data/yarden/Session26_Well1_10x.nd2: [testng] [2024-11-24 01:24:53,868] [pool-1-thread-11] Initializing /data/public/aryeh/old_cells_02.nd2: [testng] [2024-11-24 01:24:56,665] [pool-1-thread-5] Initializing /data/richard/KitWv#67.avi: [testng] [2024-11-24 01:24:59,275] [pool-1-thread-7] Initializing /data/stefanie/nd026_xy3.nd2: [testng] [2024-11-24 01:25:00,640] [pool-1-thread-4] Initializing /data/qa-29035/Seq0000.nd2: [testng] [2024-11-24 01:25:01,872] [pool-1-thread-6] Initializing /data/michael/opened skewed - C=0.tif: [testng] [2024-11-24 01:25:04,470] [pool-1-thread-10] Initializing /data/kevin/DD100liposomes_1.nd2: [testng] [2024-11-24 01:25:06,741] [pool-1-thread-12] Initializing /data/kyle-vrtis/180627 1e Cas9 GINS collapse lag lag.nd2: [testng] [2024-11-24 01:25:08,336] [pool-1-thread-3] Initializing /data/michael/frap0041 00X 1Xeyepiece 15sec Cy5 ICAM TIRF.nd2: [testng] [2024-11-24 01:25:09,912] [pool-1-thread-8] Initializing /data/public/aryeh/qa-9507/control003.nd2: [testng] [2024-11-24 01:25:13,975] [pool-1-thread-11] Initializing /data/rehan/P128 wt pg bouton.ics: [testng] [2024-11-24 01:25:19,246] [pool-1-thread-10] Initializing /data/josh/CGE1.nd2: [testng] [2024-11-24 01:25:22,161] [pool-1-thread-4] Initializing /data/christian/missing-dimensions-test.nd2: [testng] [2024-11-24 01:25:23,774] [pool-1-thread-7] Initializing /data/public/jonas/512c/nikonTest_1.nd2: [testng] [2024-11-24 01:25:28,053] [pool-1-thread-3] Initializing /data/public/jonas/512c/wtf_alignment.nd2: [testng] [2024-11-24 01:25:29,785] [pool-1-thread-6] Initializing /data/venu/nd-three_channel-2.nd2: [testng] [2024-11-24 01:25:33,704] [pool-1-thread-10] Initializing /data/ye-chen/LOCI_YeChen_Swinburne.nd2: [testng] [2024-11-24 01:25:35,432] [pool-1-thread-4] Initializing /data/kyle/F301.nd2: [testng] [2024-11-24 01:25:37,272] [pool-1-thread-12] Initializing /data/tiao/WellC03_Seq0000.nd2: [testng] [2024-11-24 01:25:38,513] [pool-1-thread-11] Initializing /data/michael/50um_004 skewed.nd2: [testng] [2024-11-24 01:25:39,874] [pool-1-thread-7] Initializing /data/qa-7908/020514 SH003.nd2: [testng] [2024-11-24 01:25:46,281] [pool-1-thread-5] Initializing /data/venu/five_160807_control cells_4D.tif: [testng] [2024-11-24 01:25:50,210] [pool-1-thread-6] Initializing /data/henry/large image.nd2: [testng] [2024-11-24 01:25:52,267] [pool-1-thread-10] Initializing /data/nadya/flat.nd2: [testng] [2024-11-24 01:25:53,925] [pool-1-thread-3] Initializing /data/qa-11064/t1_mp8_z4_chOff_005.nd2: [testng] [2024-11-24 01:25:59,107] [pool-1-thread-8] Initializing /data/public/jonas/JJ1473_control_24h/JJ1473_conrol_24h_02.nd2: [testng] [2024-11-24 01:26:01,997] [pool-1-thread-12] Initializing /data/bernhard/962_xy1.nd2: [testng] [2024-11-24 01:26:03,383] [pool-1-thread-7] Initializing /data/plaissue/2channel-Zstack-withBinaryLayer.nd2: [testng] [2024-11-24 01:26:04,725] [pool-1-thread-11] Initializing /data/public/jonas/2112-2265.nd2: [testng] [2024-11-24 01:26:07,179] [pool-1-thread-4] Initializing /data/michael/test_MCammer.nd2: [testng] [2024-11-24 01:26:10,377] [pool-1-thread-10] Initializing /data/venu/N202-11 20x20.nd2: [testng] [2024-11-24 01:26:13,185] [pool-1-thread-6] Initializing /data/david/NDSequence012.nd2: [testng] [2024-11-24 01:26:14,658] [pool-1-thread-3] Initializing /data/gh-3565/example_metadata001.nd2: [testng] [2024-11-24 01:26:16,065] [pool-1-thread-5] Initializing /data/venu/nd-two_channel-3.nd2: [testng] [2024-11-24 01:26:17,870] [pool-1-thread-8] Initializing /data/stefanie/nd026_xy0.nd2: [testng] [2024-11-24 01:26:19,741] [pool-1-thread-12] Initializing /data/john/M900117_CBP11555_C264M2_SOL_CD31_s1.nd2: [testng] [2024-11-24 01:26:21,348] [pool-1-thread-2] Initializing /data/stefanie/200307_necl2.nd2: [testng] [2024-11-24 01:26:41,187] [pool-1-thread-7] Initializing /data/venu/N202.1A+7 2h.nd2: [testng] [2024-11-24 01:26:42,468] [pool-1-thread-9] Initializing /data/qa-9183/aaron_multi_positions.nd2: [testng] [2024-11-24 01:26:46,896] [pool-1-thread-4] Initializing /data/kevin/test1.nd2: [testng] [2024-11-24 01:26:49,969] [pool-1-thread-3] Initializing /data/qa-9207/n1e 570-wisp2 670-cdh6 -2(good 1-11)_xy1.nd2: [testng] [2024-11-24 01:26:51,518] [pool-1-thread-10] Initializing /data/jose/08_SO4_Fasc100_at_surface_w_average.nd2: [testng] [2024-11-24 01:26:52,908] [pool-1-thread-11] Initializing /data/sarah/sarah_1011.nd2: [testng] [2024-11-24 01:26:54,278] [pool-1-thread-6] Initializing /data/plaissue/4channel_Zseries.nd2: [testng] [2024-11-24 01:26:55,703] [pool-1-thread-5] Initializing /data/stephen/Cody_Temp_Copy_crop.tif: [testng] [2024-11-24 01:26:59,474] [pool-1-thread-8] Initializing /data/kaustav/cell field2.nd2: [testng] [2024-11-24 01:27:03,931] [pool-1-thread-7] Initializing /data/pki/20120730 RGB 293-S1PR1-eGFP 8 compound 24hr v1.nd2: [testng] [2024-11-24 01:27:08,470] [pool-1-thread-12] Initializing /data/michael/stopped-acquisition/ND2 file does not open MCammer.nd2: [testng] [2024-11-24 01:27:10,217] [pool-1-thread-4] Initializing /data/public/aryeh/weekend002.nd2: [testng] [2024-11-24 01:27:12,449] [pool-1-thread-9] Initializing /data/public/jonas/multicolorTest.nd2: [testng] [2024-11-24 01:27:14,995] [pool-1-thread-10] Initializing /data/qa-4836/MGH media d10 large image_crop.nd2: [testng] [2024-11-24 01:27:16,984] [pool-1-thread-11] Initializing /data/michael/opened skewed - C=1.tif: [testng] [2024-11-24 01:27:20,668] [pool-1-thread-3] Initializing /data/kyle/B204.nd2: [testng] [2024-11-24 01:27:26,254] [pool-1-thread-6] Initializing /data/david/NDSequence011.nd2: [testng] [2024-11-24 01:27:29,315] [pool-1-thread-8] Initializing /data/venu/three_160807_control cells_4D.tif: [testng] [2024-11-24 01:27:34,483] [pool-1-thread-5] Initializing /data/john/M900117_CBP11555_C264M2_GAST_T1_s1.nd2: [testng] [2024-11-24 01:27:36,681] [pool-1-thread-12] Initializing /data/jcb/201101064/Fig 8B imp beta alone-MaxIP.nd2: [testng] [2024-11-24 01:27:44,239] [pool-1-thread-6] Initializing /data/yanmei/snapcells-vps1002.nd2: [testng] [2024-11-24 01:27:46,011] [pool-1-thread-3] Initializing /data/public/karl/sample_image.nd2: [testng] [2024-11-24 01:27:47,935] [pool-1-thread-9] Initializing /data/venu/1_140508,control.nd2: [testng] [2024-11-24 01:27:51,594] [pool-1-thread-11] Initializing /data/public/jonas/512c/cag_p5_simgc_2511_70ms22s_crop.nd2: [testng] [2024-11-24 01:27:53,645] [pool-1-thread-4] Initializing /data/qa-10370/example_JPIKE.nd2: [testng] [2024-11-24 01:27:56,903] [pool-1-thread-12] Initializing /data/stefanie/nd27.nd2: [testng] [2024-11-24 01:27:58,363] [pool-1-thread-8] Initializing /data/damir/Plate000_Well1_Seq0000.nd2: [testng] [2024-11-24 01:28:01,535] [pool-1-thread-7] Initializing /data/uli/2012_04_19_CHOegfr_03.nd2: [testng] [2024-11-24 01:28:03,560] [pool-1-thread-6] Initializing /data/venu/N202-15 20x001.nd2: [testng] [2024-11-24 01:28:06,966] [pool-1-thread-3] Initializing /data/qa-17695/sample.nd2: [testng] [2024-11-24 01:28:10,754] [pool-1-thread-5] Initializing /data/public/jonas/jonas_nd2Test/Exception9_e3.nd2: [testng] [2024-11-24 01:28:12,983] [pool-1-thread-9] Initializing /data/kevin/100nm_1.nd2: [testng] [2024-11-24 01:28:15,456] [pool-1-thread-10] Initializing /data/qa-9193/60x oil line scan 1 airy mono.nd2: [testng] [2024-11-24 01:28:16,758] [pool-1-thread-11] Initializing /data/dallas/150609_m597_ut8.nd2: [testng] [2024-11-24 01:28:18,439] [pool-1-thread-4] Initializing /data/venu/six_160807_control cells_4D.tif: [testng] [2024-11-24 01:28:22,127] [pool-1-thread-12] Initializing /data/venu/nd-three_channel-0.nd2: [testng] [2024-11-24 01:28:29,197] [pool-1-thread-7] Initializing /data/qa-7536/SampleND2-ChrisL.nd2: [testng] [2024-11-24 01:28:31,367] [pool-1-thread-6] Initializing /data/michael/tiling_problem_mcammer.nd2: [testng] [2024-11-24 01:28:34,826] [pool-1-thread-5] Initializing /data/bioformats2raw-184/Round1-Slot_01-Slide_01-Region_1-Stitched-Focused.nd2: [testng] [2024-11-24 01:32:35,287] [pool-1-thread-3] Initializing /data/venu/nd-three_channel-4.nd2: [testng] [2024-11-24 01:32:37,492] [pool-1-thread-10] Initializing /data/public/jonas/512c/wtf_DIC.nd2: [testng] [2024-11-24 01:32:42,384] [pool-1-thread-12] Initializing /data/bassem/A PSF1.nd2: [testng] [2024-11-24 01:32:43,523] [pool-1-thread-4] Initializing /data/public/jonas/100217_OD122_001.nd2: [testng] [2024-11-24 01:32:44,837] [pool-1-thread-9] Initializing /data/david/_t4h f.nd2: [testng] [2024-11-24 01:32:46,948] [pool-1-thread-7] Initializing /data/yarden/KH2_Well1_4x.nd2: [testng] [2024-11-24 01:32:48,161] [pool-1-thread-6] Initializing /data/imagesc-76438/FirstFileUsed_Slide2-20-1_ChannelBrightfield_Seq0001.nd2: [testng] [2024-11-24 01:32:49,970] [pool-1-thread-3] Initializing /data/aryeh/BY_GFP-Mup1_mCHERRY-VPH1_10-7-2012_Meytal-Waiss_XYZT_GOOD.nd2: [testng] [2024-11-24 01:32:52,378] [pool-1-thread-10] Initializing /data/plaissue/4channel_Zseries_2XYpoints_withROIandBinaryLayer.nd2: [testng] [2024-11-24 01:32:53,502] [pool-1-thread-12] Initializing /data/public/jonas/movieSize/JJ_RNAi_hmr-1_001.nd2: [testng] [2024-11-24 01:32:55,320] [pool-1-thread-9] Initializing /data/strand/Reconstructed ND acquisition1.nd2: [testng] [2024-11-24 01:32:56,528] [pool-1-thread-4] Initializing /data/qa-7303/CTR011.nd2: [testng] [2024-11-24 01:32:59,193] [pool-1-thread-6] Initializing /data/qa-5042/8xyPoints_3channels_00_30m235_all8xyIdentified.nd2: [testng] [2024-11-24 01:33:02,002] [pool-1-thread-3] Initializing /data/qa-7572/cells.nd2: [testng] [2024-11-24 01:33:04,846] [pool-1-thread-10] Initializing /data/qa-5042/8xyPoints_3channels_00_30m001_latelyOnly7xyIdentified.nd2: [testng] [2024-11-24 01:33:07,018] [pool-1-thread-12] Initializing /data/christophe/A1N1_Veh_2D_B4S.nd2: [testng] [2024-11-24 01:33:39,594] [pool-1-thread-4] Initializing /data/kevin/100&210nm_coat_1.nd2: [testng] [2024-11-24 01:33:42,125] [pool-1-thread-9] Initializing /data/public/aryeh/but3_cont200-1.nd2: [testng] [2024-11-24 01:33:46,755] [pool-1-thread-7] Initializing /data/public/jonas/jonas_nd2Test/Exception_2.nd2: [testng] [2024-11-24 01:33:48,153] [pool-1-thread-6] Initializing /data/qa-31330/Hotel_02-Slot_01-Slide_01-Region_1_Stitched.nd2: [testng] [2024-11-24 01:33:50,236] [pool-1-thread-11] Initializing /data/qa-4973/CX3+MCh Long Ova(4Henry)002.nd2: [testng] [2024-11-24 01:33:51,614] [pool-1-thread-3] Initializing /data/public/aryeh/MeOh_high_fluo_007.nd2: [testng] [2024-11-24 01:33:57,859] [pool-1-thread-10] Initializing /data/michael/3 stage positions 2 ch opens out of order with LOCI .nd2: [testng] [2024-11-24 01:34:00,647] [pool-1-thread-6] Initializing /data/bernhard/962.nd2: [testng] [2024-11-24 01:34:02,027] [pool-1-thread-7] Initializing /data/michael/opens_skewed.nd2: [testng] [2024-11-24 01:34:05,725] [pool-1-thread-4] Initializing /data/karsten/100720104_TestglasSchott_MM63_C10h.nd2: [testng] [2024-11-24 01:34:07,272] [pool-1-thread-3] Initializing /data/stefanie/nd026_xy2.nd2: [testng] [2024-11-24 01:34:08,705] [pool-1-thread-11] Initializing /data/plaissue/4channel_Zseries_withROIlayer.nd2: [testng] [2024-11-24 01:34:10,377] [pool-1-thread-2] Initializing /data/venu/nd-two_channel-4.nd2: [testng] [2024-11-24 01:34:14,723] [pool-1-thread-10] Initializing /data/public/aryeh/MeOh_high_fluo_011.nd2: [testng] [2024-11-24 01:34:18,974] [pool-1-thread-11] Initializing /data/imagesc-76438/Slide2-20-2_Region0003_ChannelBrightfield_Seq0013.nd2: [testng] [2024-11-24 01:34:23,558] [pool-1-thread-3] Initializing /data/qa-7535/JJ_Controls_D_004.nd2: [testng] [2024-11-24 01:34:26,368] [pool-1-thread-7] Initializing /data/qa-10100/20141002_V019+AFP1052n3-005.nd2: [testng] [2024-11-24 01:34:27,455] [pool-1-thread-9] Initializing /data/qa-4958/521_t1.nd2: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 13091, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 59 minutes 41 seconds Finished: SUCCESS