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Started by upstream project "BIOFORMATS-test-repo" build number 31 originally caused by: Started by upstream project "Trigger" build number 35 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins11381197790672170437.sh + '[' jpeg2000 = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_4228_merge_ci -v /uod/idr/repos/curated/jpeg2000:/data -v /uod/idr-scratch/merge-ci/curated/jpeg2000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 08:43:09,330 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 08:43:09,332 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 08:43:09,332 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:43:09,334 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:43:09,334 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 08:43:09,334 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 08:43:09,334 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 08:43:09,334 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:43:09,335 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:43:09,335 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 08:43:09,335 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 08:43:09,335 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 08:43:09,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 08:43:09,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 08:43:09,604 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 08:43:09,604 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 08:43:09,612 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 08:43:09,613 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 08:43:09,613 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 08:43:09,613 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 08:43:09,613 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 08:43:09,614 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 08:43:09,614 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 279 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-12 08:43:09,624] [main] java.version = 1.8.0_342 [testng] 08:43:09,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 08:43:09,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:43:09,673 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-12_08-43-09.log] [testng] 08:43:09,675 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-04-12 08:43:09,677] [main] testng.directory = /data [testng] [2024-04-12 08:43:09,677] [main] testng.configDirectory = /config [testng] [2024-04-12 08:43:09,689] [main] testng.multiplier = 1.0 [testng] [2024-04-12 08:43:09,690] [main] testng.in-memory = false [testng] [2024-04-12 08:43:09,690] [main] testng.allow-missing = false [testng] [2024-04-12 08:43:09,690] [main] user.language = en [testng] [2024-04-12 08:43:09,690] [main] user.country = ${user.country} [testng] [2024-04-12 08:43:09,690] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-04-12 08:43:12,057] [main] ---------------------------------------- [testng] [2024-04-12 08:43:12,057] [main] Total files: 31 [testng] [2024-04-12 08:43:12,058] [main] Scan time: 2.367 s (76 ms/file) [testng] [2024-04-12 08:43:12,058] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 30 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-12 08:43:14,506] [pool-1-thread-1] Initializing /data/vikram/Captured 4.jp2: [testng] 08:43:14,506 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 08:43:14,506 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:43:14,507 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-12_08-43-14.log] [testng] 08:43:14,508 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1520cbc1 - End of configuration. [testng] [2024-04-12 08:43:14,557] [pool-1-thread-12] Initializing /data/big-images/8kx8k.jpf: [testng] 08:43:14,558 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 08:43:14,558 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:43:14,559 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-12_08-43-14.log] [testng] 08:43:14,559 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d2b230e - End of configuration. [testng] [2024-04-12 08:43:14,574] [pool-1-thread-11] Initializing /data/venu/Multichannel 3a.jpg: [testng] 08:43:14,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 08:43:14,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:43:14,575 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-12_08-43-14.log] [testng] 08:43:14,576 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65b3a844 - End of configuration. [testng] [2024-04-12 08:43:14,913] [pool-1-thread-10] Initializing /data/david/C1R1_FOS.jp2: [testng] 08:43:14,914 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 08:43:14,914 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:43:14,915 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-12_08-43-14.log] [testng] 08:43:14,915 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e72bd80 - End of configuration. [testng] [2024-04-12 08:43:14,938] [pool-1-thread-9] Initializing /data/david/multichannel-2d test-non MBF-type.jp2: [testng] 08:43:14,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 08:43:14,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:43:14,939 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-12_08-43-14.log] [testng] 08:43:14,940 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44334181 - End of configuration. [testng] [2024-04-12 08:43:14,977] [pool-1-thread-8] Initializing /data/vikram/Captured 5.jp2: [testng] 08:43:14,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 08:43:14,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:43:14,978 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-12_08-43-14.log] [testng] 08:43:14,978 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f0f6079 - End of configuration. [testng] [2024-04-12 08:43:15,004] [pool-1-thread-7] Initializing /data/vikram/Captured 1.jp2: [testng] 08:43:15,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 08:43:15,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:43:15,005 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-12_08-43-15.log] [testng] 08:43:15,006 |-INFO in ch.qos.logback.core.sift.SiftProcessor@503d746f - End of configuration. [testng] [2024-04-12 08:43:15,034] [pool-1-thread-6] Initializing /data/kraig/head.jp2: [testng] 08:43:15,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 08:43:15,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:43:15,035 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-12_08-43-15.log] [testng] 08:43:15,036 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1bfc75c0 - End of configuration. [testng] [2024-04-12 08:43:15,070] [pool-1-thread-5] Initializing /data/misc/clown-rgb.jpc: [testng] 08:43:15,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 08:43:15,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:43:15,071 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-12_08-43-15.log] [testng] 08:43:15,071 |-INFO in ch.qos.logback.core.sift.SiftProcessor@682064fe - End of configuration. [testng] [2024-04-12 08:43:15,082] [pool-1-thread-4] Initializing /data/misc/clown-rgb.jp2: [testng] 08:43:15,082 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 08:43:15,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:43:15,083 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-12_08-43-15.log] [testng] 08:43:15,084 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47c6d55d - End of configuration. [testng] [2024-04-12 08:43:15,096] [pool-1-thread-3] Initializing /data/big-images/2kx2k.jpf: [testng] 08:43:15,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 08:43:15,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:43:15,097 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-12_08-43-15.log] [testng] 08:43:15,098 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73c8c4ae - End of configuration. [testng] [2024-04-12 08:43:15,125] [pool-1-thread-2] Initializing /data/mike/LCM4-1-cr10-cleaned.jp2: [testng] 08:43:15,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 08:43:15,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:43:15,126 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-12_08-43-15.log] [testng] 08:43:15,127 |-INFO in ch.qos.logback.core.sift.SiftProcessor@434f33fa - End of configuration. [testng] [2024-04-12 08:43:17,281] [pool-1-thread-7] Initializing /data/vikram/Captured 2.jp2: [testng] [2024-04-12 08:43:17,302] [pool-1-thread-5] Initializing /data/aryeh/flour 12.jp2: [testng] [2024-04-12 08:43:17,331] [pool-1-thread-4] Initializing /data/venu/Multichannel 3.jp2: [testng] [2024-04-12 08:43:17,538] [pool-1-thread-11] Initializing /data/mike/LCM-4-3-color-cleaned.tiff: [testng] [2024-04-12 08:43:17,575] [pool-1-thread-1] Initializing /data/david/multichannel-3d-MBF-type.jpx: [testng] [2024-04-12 08:43:17,932] [pool-1-thread-8] Initializing /data/david/multichannel-3d-non-MBF-trial-2.jpx: [testng] [2024-04-12 08:43:18,312] [pool-1-thread-6] Initializing /data/big-images/4kx4k.jpf: [testng] [2024-04-12 08:43:19,810] [pool-1-thread-7] Initializing /data/david/cy5-tph.jp2: [testng] [2024-04-12 08:43:20,042] [pool-1-thread-11] Initializing /data/mario/b0bCDME-0007_wB05_s1_z1_t1_cGFP_u001.jp2: [testng] [2024-04-12 08:43:20,362] [pool-1-thread-5] Initializing /data/vikram/Captured 3.jp2: [testng] [2024-04-12 08:43:21,471] [pool-1-thread-5] Initializing /data/angel/052_L050071_56_x2hv.jp2: [testng] [2024-04-12 08:43:24,548] [pool-1-thread-2] Initializing /data/frans/flower.jp2: [testng] [2024-04-12 08:43:27,105] [pool-1-thread-11] Initializing /data/misc/clown-rgb.jbig: [testng] [2024-04-12 08:43:27,180] [pool-1-thread-3] Initializing /data/david/000000_000001.jpx: [testng] [2024-04-12 08:43:27,489] [pool-1-thread-11] Initializing /data/david/multichannel-2d test.jp2: [testng] [2024-04-12 08:43:31,978] [pool-1-thread-4] Initializing /data/mike/LCM-4-3-color-cleaned.jp2: [testng] [2024-04-12 08:43:35,815] [pool-1-thread-3] Initializing /data/angel/002_L050071_32_01_09_x2.jp2: [testng] [2024-04-12 08:43:38,723] [pool-1-thread-5] Initializing /data/mike/LCM-4-3-color-cleaned-LOCI.tiff: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1590, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 5 minutes 4 seconds Finished: SUCCESS