Started by upstream project "BIOFORMATS-test-repo" build number 272 originally caused by: Started by upstream project "Trigger" build number 294 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins16338751393431592069.sh + '[' pict = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_42846_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:47:33,796 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:47:33,798 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 00:47:33,798 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:47:33,799 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:47:33,799 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:47:33,799 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:47:33,800 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:47:33,800 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:47:33,800 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:47:33,800 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:47:33,800 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:47:33,801 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:47:34,030 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:47:34,030 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:47:34,056 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:47:34,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:47:34,065 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:47:34,066 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:47:34,066 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:47:34,066 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:47:34,067 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 00:47:34,068 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 00:47:34,068 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 268 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-29 00:47:34,080] [main] java.version = 1.8.0_342 [testng] 00:47:34,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:47:34,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:34,128 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-29_00-47-34.log] [testng] 00:47:34,130 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-11-29 00:47:34,132] [main] testng.directory = /data [testng] [2024-11-29 00:47:34,132] [main] testng.configDirectory = /config [testng] [2024-11-29 00:47:34,144] [main] testng.multiplier = 1.0 [testng] [2024-11-29 00:47:34,144] [main] testng.in-memory = false [testng] [2024-11-29 00:47:34,144] [main] testng.allow-missing = false [testng] [2024-11-29 00:47:34,144] [main] user.language = en [testng] [2024-11-29 00:47:34,144] [main] user.country = ${user.country} [testng] [2024-11-29 00:47:34,144] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-11-29 00:47:34,767] [main] ---------------------------------------- [testng] [2024-11-29 00:47:34,767] [main] Total files: 25 [testng] [2024-11-29 00:47:34,767] [main] Scan time: 0.623 s (24 ms/file) [testng] [2024-11-29 00:47:34,767] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-29 00:47:37,529] [pool-1-thread-1] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] 00:47:37,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:47:37,530 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:37,531 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-29_00-47-37.log] [testng] 00:47:37,531 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b172cf3 - End of configuration. [testng] [2024-11-29 00:47:37,627] [pool-1-thread-12] Initializing /data/jqd/mire32.pict: [testng] 00:47:37,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:47:37,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:37,628 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-29_00-47-37.log] [testng] 00:47:37,629 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3db63531 - End of configuration. [testng] [2024-11-29 00:47:37,696] [pool-1-thread-11] Initializing /data/brian/images/FLAG_B24.PCT: [testng] 00:47:37,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:47:37,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:37,697 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-29_00-47-37.log] [testng] 00:47:37,698 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d9d2261 - End of configuration. [testng] [2024-11-29 00:47:37,772] [pool-1-thread-10] Initializing /data/misc/planet2.pict: [testng] 00:47:37,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:47:37,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:37,774 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-29_00-47-37.log] [testng] 00:47:37,774 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7206136c - End of configuration. [testng] [2024-11-29 00:47:37,853] [pool-1-thread-9] Initializing /data/brian/images/GRN.PCT: [testng] 00:47:37,854 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:47:37,854 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:37,855 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-29_00-47-37.log] [testng] 00:47:37,855 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2aaaebdd - End of configuration. [testng] [2024-11-29 00:47:37,915] [pool-1-thread-8] Initializing /data/misc/planet.png: [testng] 00:47:37,915 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:47:37,915 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:37,916 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-29_00-47-37.log] [testng] 00:47:37,916 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43c32ecb - End of configuration. [testng] [2024-11-29 00:47:37,926] [pool-1-thread-7] Initializing /data/brian/images/VENUS.pct: [testng] 00:47:37,926 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:47:37,926 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:37,927 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-29_00-47-37.log] [testng] 00:47:37,927 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41a5e011 - End of configuration. [testng] [2024-11-29 00:47:37,999] [pool-1-thread-6] Initializing /data/brian/images/RED.PCT: [testng] 00:47:37,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:47:37,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:38,000 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-29_00-47-38.log] [testng] 00:47:38,000 |-INFO in ch.qos.logback.core.sift.SiftProcessor@709a9e28 - End of configuration. [testng] [2024-11-29 00:47:38,064] [pool-1-thread-5] Initializing /data/brian/images/FLAG_B32.pct: [testng] 00:47:38,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:47:38,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:38,065 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-29_00-47-38.log] [testng] 00:47:38,065 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e8f90dd - End of configuration. [testng] [2024-11-29 00:47:38,146] [pool-1-thread-4] Initializing /data/misc/swlogo.pict: [testng] 00:47:38,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:47:38,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:38,147 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-29_00-47-38.log] [testng] 00:47:38,147 |-INFO in ch.qos.logback.core.sift.SiftProcessor@719561d4 - End of configuration. [testng] [2024-11-29 00:47:38,248] [pool-1-thread-3] Initializing /data/jqd/32bit.pict: [testng] 00:47:38,248 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:47:38,248 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:38,249 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-29_00-47-38.log] [testng] 00:47:38,249 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c81b4d3 - End of configuration. [testng] [2024-11-29 00:47:38,367] [pool-1-thread-2] Initializing /data/wayne/PotatoMeristem.pict: [testng] 00:47:38,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:47:38,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:38,368 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-29_00-47-38.log] [testng] 00:47:38,369 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a283f48 - End of configuration. [testng] [2024-11-29 00:47:40,846] [pool-1-thread-8] Initializing /data/brian/images/BLK.PCT: [testng] [2024-11-29 00:47:41,374] [pool-1-thread-9] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] [2024-11-29 00:47:41,468] [pool-1-thread-5] Initializing /data/brian/images/FLAG_RGB.pct: [testng] [2024-11-29 00:47:41,547] [pool-1-thread-11] Initializing /data/brian/images/WHT.PCT: [testng] [2024-11-29 00:47:41,627] [pool-1-thread-12] Initializing /data/brian/images/MARBLES_B32.pct: [testng] [2024-11-29 00:47:41,854] [pool-1-thread-4] Initializing /data/brian/images/YEL.PCT: [testng] [2024-11-29 00:47:42,118] [pool-1-thread-2] Initializing /data/jqd/sixteenBit.pict: [testng] [2024-11-29 00:47:42,258] [pool-1-thread-3] Initializing /data/brian/images/TRU256.PCT: [testng] [2024-11-29 00:47:42,418] [pool-1-thread-6] Initializing /data/jqd/mireSixteen.pict: [testng] [2024-11-29 00:47:42,525] [pool-1-thread-1] Initializing /data/brian/images/BLU.PCT: [testng] [2024-11-29 00:47:42,617] [pool-1-thread-7] Initializing /data/misc/planet.pict: [testng] [2024-11-29 00:47:42,722] [pool-1-thread-10] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] [2024-11-29 00:47:43,774] [pool-1-thread-8] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 14 seconds Finished: SUCCESS