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Started by upstream project "BIOFORMATS-test-repo" build number 4 originally caused by: Started by upstream project "Trigger" build number 5 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins1346186768905816811.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_547_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:12:49,866 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:12:49,868 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service. [testng] 01:12:49,868 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:12:49,870 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:12:49,871 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:12:49,871 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:12:49,871 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:12:49,871 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:12:49,872 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:12:49,873 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:12:49,874 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:12:49,874 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:12:50,108 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:12:50,109 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:12:50,136 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:12:50,136 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:12:50,142 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:12:50,143 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:12:50,143 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:12:50,143 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:12:50,143 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration. [testng] 01:12:50,144 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point [testng] 01:12:50,144 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 272 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-03-17 01:12:50,158] [main] java.version = 17.0.2 [testng] 01:12:50,162 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:12:50,162 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:12:50,204 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-17_01-12-50.log] [testng] 01:12:50,206 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-03-17 01:12:50,208] [main] testng.directory = /data [testng] [2024-03-17 01:12:50,208] [main] testng.configDirectory = /config [testng] [2024-03-17 01:12:50,217] [main] testng.multiplier = 1.0 [testng] [2024-03-17 01:12:50,218] [main] testng.in-memory = false [testng] [2024-03-17 01:12:50,218] [main] testng.allow-missing = false [testng] [2024-03-17 01:12:50,218] [main] user.language = en [testng] [2024-03-17 01:12:50,218] [main] user.country = ${user.country} [testng] [2024-03-17 01:12:50,218] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-03-17 01:21:19,012] [main] ---------------------------------------- [testng] [2024-03-17 01:21:19,012] [main] Total files: 7329 [testng] [2024-03-17 01:21:19,012] [main] Scan time: 508.794 s (69 ms/file) [testng] [2024-03-17 01:21:19,013] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-03-17 01:26:44,405] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] 01:26:44,405 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:26:44,405 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:44,407 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-17_01-26-44.log] [testng] 01:26:44,407 |-INFO in ch.qos.logback.core.sift.SiftProcessor@695a9ea - End of configuration. [testng] [2024-03-17 01:26:44,853] [pool-1-thread-12] Initializing /data/qa-16915/m-04-488.tif: [testng] 01:26:44,854 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:26:44,854 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:44,855 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-17_01-26-44.log] [testng] 01:26:44,855 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13bf279d - End of configuration. [testng] [2024-03-17 01:26:45,440] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] 01:26:45,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:26:45,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:45,441 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-17_01-26-45.log] [testng] 01:26:45,441 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7669387c - End of configuration. [testng] [2024-03-17 01:26:45,793] [pool-1-thread-11] Used files list does not include base file [testng] [2024-03-17 01:26:45,795] [pool-1-thread-10] Initializing /data/ascb/mt mklp1.tif: [testng] 01:26:45,795 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:26:45,795 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:45,795 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-17_01-26-45.log] [testng] 01:26:45,796 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3fae2279 - End of configuration. [testng] [2024-03-17 01:26:46,085] [pool-1-thread-9] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] 01:26:46,085 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:26:46,085 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:46,085 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-17_01-26-46.log] [testng] 01:26:46,086 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4953dce9 - End of configuration. [testng] [2024-03-17 01:26:46,530] [pool-1-thread-8] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] 01:26:46,531 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:26:46,531 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:46,531 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-17_01-26-46.log] [testng] 01:26:46,532 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69b5f76d - End of configuration. [testng] [2024-03-17 01:26:47,047] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] 01:26:47,047 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:26:47,048 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:47,049 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-17_01-26-47.log] [testng] 01:26:47,049 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ccd340d - End of configuration. [testng] [2024-03-17 01:26:47,912] [pool-1-thread-7] Used files list does not include base file [testng] [2024-03-17 01:26:47,915] [pool-1-thread-6] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] 01:26:47,915 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:26:47,915 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:47,916 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-17_01-26-47.log] [testng] 01:26:47,917 |-INFO in ch.qos.logback.core.sift.SiftProcessor@568ab13b - End of configuration. [testng] [2024-03-17 01:26:48,309] [pool-1-thread-5] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] 01:26:48,309 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:26:48,309 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:48,310 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-17_01-26-48.log] [testng] 01:26:48,310 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4821504 - End of configuration. [testng] [2024-03-17 01:26:48,824] [pool-1-thread-4] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] 01:26:48,824 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:26:48,824 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:48,825 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-17_01-26-48.log] [testng] 01:26:48,825 |-INFO in ch.qos.logback.core.sift.SiftProcessor@166c6ce2 - End of configuration. [testng] [2024-03-17 01:26:49,161] [pool-1-thread-3] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] 01:26:49,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:26:49,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:49,162 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-17_01-26-49.log] [testng] 01:26:49,163 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f7a415d - End of configuration. [testng] [2024-03-17 01:26:52,090] [pool-1-thread-2] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] 01:26:52,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:26:52,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:52,091 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-17_01-26-52.log] [testng] 01:26:52,091 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63aa2ee0 - End of configuration. [testng] [2024-03-17 01:26:56,691] [pool-1-thread-5] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-03-17 01:26:57,314] [pool-1-thread-10] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-03-17 01:26:57,899] [pool-1-thread-8] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] [2024-03-17 01:26:59,073] [pool-1-thread-12] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2024-03-17 01:27:01,055] [pool-1-thread-4] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-03-17 01:27:02,245] [pool-1-thread-9] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] [2024-03-17 01:27:03,125] [pool-1-thread-5] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-03-17 01:27:03,868] [pool-1-thread-8] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-03-17 01:27:04,489] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2024-03-17 01:27:05,510] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t1.TIF: [testng] [2024-03-17 01:27:06,395] [pool-1-thread-1] Used files list does not include base file [testng] [2024-03-17 01:27:07,771] [pool-1-thread-6] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2024-03-17 01:27:08,287] [pool-1-thread-9] Initializing /data/jacek/YFP2trans.tif: [testng] [2024-03-17 01:27:10,195] [pool-1-thread-10] Initializing /data/ascb/golgi marker 2.tif: [testng] [2024-03-17 01:27:13,068] [pool-1-thread-9] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-03-17 01:27:14,633] [pool-1-thread-6] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-03-17 01:27:16,325] [pool-1-thread-10] Initializing /data/josh/EditedMovies/2101to400a.stk: [testng] [2024-03-17 01:27:19,209] [pool-1-thread-3] Initializing /data/qa-16915/m-04-561.tif: [testng] [2024-03-17 01:27:20,501] [pool-1-thread-5] Initializing /data/ascb/mt aim.tif: [testng] [2024-03-17 01:27:20,973] [pool-1-thread-12] Initializing /data/qa-16887/m-01.tif: [testng] [2024-03-17 01:27:22,839] [pool-1-thread-8] Initializing /data/qa-16915/m-01-488.ome.tif: [testng] [2024-03-17 01:27:24,088] [pool-1-thread-7] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-03-17 01:27:24,742] [pool-1-thread-11] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-03-17 01:27:25,240] [pool-1-thread-11] Used files list does not include base file [testng] [2024-03-17 01:27:25,262] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2024-03-17 01:27:27,397] [pool-1-thread-5] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-03-17 01:27:28,751] [pool-1-thread-3] Initializing /data/josh/2101to800.stk: [testng] [2024-03-17 01:27:32,322] [pool-1-thread-9] Initializing /data/samples/zserEight.stk: [testng] [2024-03-17 01:27:32,889] [pool-1-thread-12] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-03-17 01:27:36,000] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2024-03-17 01:27:37,536] [pool-1-thread-6] Initializing /data/samples/zserSixteen.stk: [testng] [2024-03-17 01:27:37,857] [pool-1-thread-7] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-17 01:27:38,642] [pool-1-thread-11] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-03-17 01:27:39,188] [pool-1-thread-9] Initializing /data/ascb/golgi marker.tif: [testng] [2024-03-17 01:27:39,611] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.tif: [testng] [2024-03-17 01:27:40,822] [pool-1-thread-10] Initializing /data/jae/RGB_s34.tif: [testng] [2024-03-17 01:27:42,097] [pool-1-thread-6] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-17 01:27:42,891] [pool-1-thread-8] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-03-17 01:27:45,204] [pool-1-thread-9] Initializing /data/josh/2101to400astk.stk: [testng] [2024-03-17 01:27:49,399] [pool-1-thread-7] Initializing /data/chris/exp1_w1CSU GREEN_s3_t002.stk: [testng] [2024-03-17 01:27:49,956] [pool-1-thread-11] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment5_w1DUAL 491-561_t1.TIF: [testng] [2024-03-17 01:27:50,710] [pool-1-thread-1] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] [2024-03-17 01:27:52,878] [pool-1-thread-10] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-03-17 01:27:55,051] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2024-03-17 01:27:55,609] [pool-1-thread-3] Used files list does not include base file [testng] [2024-03-17 01:27:55,624] [pool-1-thread-8] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2024-03-17 01:27:57,282] [pool-1-thread-12] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] [2024-03-17 01:27:58,282] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-03-17 01:27:58,617] [pool-1-thread-7] Used files list does not include base file [testng] [2024-03-17 01:27:59,258] [pool-1-thread-6] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-03-17 01:28:00,297] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w3Filter TRITC.TIF: [testng] [2024-03-17 01:28:01,661] [pool-1-thread-12] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-03-17 01:28:02,101] [pool-1-thread-5] Initializing /data/chris/test2_w2_s1_t1.stk: [testng] [2024-03-17 01:28:03,347] [pool-1-thread-6] Initializing /data/josh/2101to400bstk.stk: [testng] [2024-03-17 01:28:16,803] [pool-1-thread-7] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-03-17 01:28:17,696] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-03-17 01:28:18,134] [pool-1-thread-5] Used files list does not include base file [testng] [2024-03-17 01:28:18,136] [pool-1-thread-12] Initializing /data/graham/G_Wright raw.stk: [testng] [2024-03-17 01:28:18,591] [pool-1-thread-4] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-03-17 01:28:21,234] [pool-1-thread-8] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2024-03-17 01:28:22,481] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-03-17 01:28:25,192] [pool-1-thread-8] Initializing /data/heiko/sample_3x3.stk: [testng] [2024-03-17 01:28:26,594] [pool-1-thread-12] Initializing /data/qa-16915/m-01.tif: [testng] [2024-03-17 01:28:29,086] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-03-17 01:28:30,314] [pool-1-thread-9] Initializing /data/steve/Experiment2.stk: [testng] [2024-03-17 01:28:30,619] [pool-1-thread-8] Initializing /data/steve/Experiment2.tif: [testng] [2024-03-17 01:28:33,829] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2024-03-17 01:28:33,873] [pool-1-thread-3] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] [2024-03-17 01:28:34,154] [pool-1-thread-9] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-03-17 01:28:34,508] [pool-1-thread-9] Used files list does not include base file [testng] [2024-03-17 01:28:34,510] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-03-17 01:28:34,802] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-03-17 01:28:35,201] [pool-1-thread-8] Used files list does not include base file [testng] [2024-03-17 01:28:36,332] [pool-1-thread-10] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2024-03-17 01:28:37,120] [pool-1-thread-5] Initializing /data/josh/EditedMovies/2101to600a.stk: [testng] [2024-03-17 01:28:41,879] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2024-03-17 01:28:41,920] [pool-1-thread-12] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2024-03-17 01:28:43,174] [pool-1-thread-10] Initializing 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[testng] [2024-03-17 01:28:55,576] [pool-1-thread-10] Initializing /data/samples/diatoms3d.stk: [testng] [2024-03-17 01:28:55,900] [pool-1-thread-3] Initializing /data/qa-16915/m-02-561.ome.tif: [testng] [2024-03-17 01:28:56,678] [pool-1-thread-2] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-03-17 01:28:57,005] [pool-1-thread-8] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2024-03-17 01:28:58,580] [pool-1-thread-10] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-03-17 01:28:59,801] [pool-1-thread-1] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2024-03-17 01:29:00,231] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-03-17 01:29:00,542] [pool-1-thread-12] Initializing /data/josh/2101to600f.stk: [testng] [2024-03-17 01:29:07,474] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2024-03-17 01:29:08,158] [pool-1-thread-2] Used files list does not include base file [testng] [2024-03-17 01:29:08,646] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2024-03-17 01:29:10,509] [pool-1-thread-4] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-03-17 01:29:11,158] [pool-1-thread-1] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-17 01:29:11,784] [pool-1-thread-9] Initializing /data/samples/10xcalib.tif: [testng] [2024-03-17 01:29:12,561] [pool-1-thread-3] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-03-17 01:29:15,297] [pool-1-thread-9] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-03-17 01:29:15,751] [pool-1-thread-8] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] [2024-03-17 01:29:18,351] [pool-1-thread-3] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] [2024-03-17 01:29:20,234] [pool-1-thread-5] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-03-17 01:29:20,858] [pool-1-thread-11] Initializing /data/alex/Selected FITC.stk: [testng] [2024-03-17 01:29:22,239] [pool-1-thread-9] Initializing /data/qa-16907/1_w1Single SPI 405.TIF: [testng] [2024-03-17 01:29:23,094] [pool-1-thread-3] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-03-17 01:29:24,152] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-17 01:29:26,366] [pool-1-thread-4] Initializing /data/ascb/C1 Stack.stk: [testng] [2024-03-17 01:29:26,970] [pool-1-thread-5] Initializing /data/chris/exp1_w2CSU RED_s3_t003.stk: [testng] [2024-03-17 01:29:27,466] [pool-1-thread-11] Initializing /data/samples/zseries.stk: [testng] [2024-03-17 01:29:31,031] [pool-1-thread-11] Initializing 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/data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-03-17 01:29:53,491] [pool-1-thread-3] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-03-17 01:29:57,874] [pool-1-thread-11] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-03-17 01:29:58,524] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-17 01:29:59,161] [pool-1-thread-2] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-03-17 01:30:00,917] [pool-1-thread-5] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-03-17 01:30:02,657] [pool-1-thread-7] Initializing /data/samples/10xcalib.stk: [testng] [2024-03-17 01:30:04,587] [pool-1-thread-5] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2024-03-17 01:30:06,040] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-03-17 01:30:06,497] [pool-1-thread-1] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-03-17 01:30:07,123] [pool-1-thread-12] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] [2024-03-17 01:30:07,639] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2024-03-17 01:30:08,362] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] [2024-03-17 01:30:08,966] [pool-1-thread-11] Used files list does not include base file [testng] [2024-03-17 01:30:08,987] [pool-1-thread-9] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-03-17 01:30:11,314] [pool-1-thread-6] Initializing /data/josh/2101to600e.stk: [testng] [2024-03-17 01:30:13,927] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-03-17 01:30:14,830] [pool-1-thread-7] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-03-17 01:30:16,919] [pool-1-thread-1] Initializing /data/dave/Z Series.stk: [testng] [2024-03-17 01:30:17,537] [pool-1-thread-2] Initializing /data/qa-30870/220209_posit5.tif: [testng] [2024-03-17 01:30:18,904] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-03-17 01:30:19,475] [pool-1-thread-9] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-03-17 01:30:20,416] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-17 01:30:21,480] [pool-1-thread-12] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-03-17 01:30:23,779] [pool-1-thread-1] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-03-17 01:30:25,185] [pool-1-thread-5] Initializing 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WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-03-17 01:30:28,653] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2024-03-17 01:30:29,381] [pool-1-thread-12] Used files list does not include base file [testng] [2024-03-17 01:30:30,611] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-03-17 01:30:31,302] [pool-1-thread-9] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-03-17 01:30:34,294] [pool-1-thread-7] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2024-03-17 01:30:35,967] [pool-1-thread-6] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2024-03-17 01:30:36,820] [pool-1-thread-1] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-03-17 01:30:38,131] [pool-1-thread-11] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-03-17 01:30:41,813] [pool-1-thread-7] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-03-17 01:30:43,312] [pool-1-thread-11] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-03-17 01:30:44,534] [pool-1-thread-9] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-03-17 01:30:45,653] [pool-1-thread-11] Initializing /data/josh/2101to600b.stk: [testng] [2024-03-17 01:30:50,399] [pool-1-thread-6] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-03-17 01:30:53,471] [pool-1-thread-1] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-03-17 01:30:56,550] [pool-1-thread-12] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-03-17 01:30:58,641] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-03-17 01:30:59,779] [pool-1-thread-9] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2024-03-17 01:31:02,656] [pool-1-thread-1] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-03-17 01:31:04,418] [pool-1-thread-9] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] [2024-03-17 01:31:05,397] [pool-1-thread-7] Initializing /data/grant/X.STK: [testng] [2024-03-17 01:31:08,441] [pool-1-thread-6] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-03-17 01:31:11,331] [pool-1-thread-1] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2024-03-17 01:31:13,608] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s1t11_w1Laser4054BD4BP.tif: [testng] [2024-03-17 01:31:15,075] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-03-17 01:31:15,981] [pool-1-thread-1] Used files list does not include base file [testng] [2024-03-17 01:31:20,078] [pool-1-thread-2] Initializing /data/thomas/test.tif: [testng] [2024-03-17 01:31:20,676] [pool-1-thread-7] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-03-17 01:31:24,106] [pool-1-thread-2] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-03-17 01:31:24,893] [pool-1-thread-7] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-17 01:31:25,995] [pool-1-thread-12] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2024-03-17 01:31:26,775] [pool-1-thread-11] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-03-17 01:31:30,425] [pool-1-thread-11] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-03-17 01:31:31,484] [pool-1-thread-9] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] [2024-03-17 01:31:32,494] [pool-1-thread-6] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-03-17 01:31:33,265] [pool-1-thread-12] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-03-17 01:31:40,001] [pool-1-thread-2] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-03-17 01:31:40,953] [pool-1-thread-2] Used files list does not include base file [testng] [2024-03-17 01:31:42,040] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-17 01:31:45,341] [pool-1-thread-7] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2024-03-17 01:31:46,725] [pool-1-thread-11] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] [2024-03-17 01:31:48,033] [pool-1-thread-1] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-03-17 01:31:50,484] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-03-17 01:31:51,454] [pool-1-thread-5] Used files list does not include base file [testng] [2024-03-17 01:31:51,480] [pool-1-thread-2] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-03-17 01:31:54,721] [pool-1-thread-1] Initializing /data/grant/XYZ_Image.STK: [testng] [2024-03-17 01:31:55,486] [pool-1-thread-6] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-03-17 01:32:04,157] [pool-1-thread-4] Initializing /data/cumol-test-series/23.001: [testng] [2024-03-17 01:32:05,695] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-03-17 01:32:06,886] [pool-1-thread-7] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-03-17 01:32:08,369] [pool-1-thread-11] Initializing /data/chris/Stream-2(partial).stk: [testng] [2024-03-17 01:32:12,412] [pool-1-thread-9] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-03-17 01:32:13,043] [pool-1-thread-2] Initializing /data/jerome/deconv.STK: [testng] [2024-03-17 01:32:13,713] [pool-1-thread-7] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2024-03-17 01:32:20,995] [pool-1-thread-1] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-03-17 01:32:23,380] [pool-1-thread-9] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2024-03-17 01:32:56,997] [pool-1-thread-2] Initializing /data/sebastien-besson/001/120119_VimMito_001_w1DIC_t1.TIF: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 72 minutes 24 seconds Finished: SUCCESS