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Started by upstream project "BIOFORMATS-test-repo" build number 54 originally caused by: Started by upstream project "Trigger" build number 61 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins2128922774586479607.sh + '[' tiff = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_7857_merge_ci -v /uod/idr/repos/curated/tiff:/data -v /uod/idr-scratch/merge-ci/curated/tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:21:05,499 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:21:05,500 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service. [testng] 01:21:05,500 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:21:05,501 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:21:05,502 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:21:05,502 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:21:05,502 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:21:05,502 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:21:05,503 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:21:05,503 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:21:05,504 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:21:05,504 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:21:05,692 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:21:05,693 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:21:05,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:21:05,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:21:05,722 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:21:05,722 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:21:05,722 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:21:05,722 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:21:05,723 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration. [testng] 01:21:05,723 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point [testng] 01:21:05,723 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 220 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-05 01:21:05,734] [main] java.version = 17.0.2 [testng] 01:21:05,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:21:05,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:05,786 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-05_01-21-05.log] [testng] 01:21:05,788 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-05-05 01:21:05,790] [main] testng.directory = /data [testng] [2024-05-05 01:21:05,790] [main] testng.configDirectory = /config [testng] [2024-05-05 01:21:05,802] [main] testng.multiplier = 1.0 [testng] [2024-05-05 01:21:05,803] [main] testng.in-memory = false [testng] [2024-05-05 01:21:05,803] [main] testng.allow-missing = false [testng] [2024-05-05 01:21:05,803] [main] user.language = en [testng] [2024-05-05 01:21:05,803] [main] user.country = ${user.country} [testng] [2024-05-05 01:21:05,803] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-05-05 01:21:20,312] [main] ---------------------------------------- [testng] [2024-05-05 01:21:20,312] [main] Total files: 4424 [testng] [2024-05-05 01:21:20,312] [main] Scan time: 14.509 s (3 ms/file) [testng] [2024-05-05 01:21:20,312] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 721 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-05 01:23:21,989] [pool-1-thread-1] Initializing /data/brian/PlantCell/PlantCell_C0_Z017.tif: [testng] 01:23:21,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:23:21,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:21,991 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-05_01-23-21.log] [testng] 01:23:21,992 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21f1b17a - End of configuration. [testng] [2024-05-05 01:23:22,023] [pool-1-thread-12] Initializing /data/stephane/Fluid Dynamics.tif: [testng] 01:23:22,023 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:23:22,023 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:22,024 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-05_01-23-22.log] [testng] 01:23:22,024 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11e11685 - End of configuration. [testng] [2024-05-05 01:23:22,050] [pool-1-thread-11] Initializing /data/alexa/test4.tif: [testng] 01:23:22,050 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:23:22,051 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:22,051 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-05_01-23-22.log] [testng] 01:23:22,052 |-INFO in ch.qos.logback.core.sift.SiftProcessor@119eb72 - End of configuration. [testng] [2024-05-05 01:23:22,076] [pool-1-thread-10] Initializing /data/josiah/cell-Z25.C1.tiff: [testng] 01:23:22,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:23:22,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:22,077 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-05_01-23-22.log] [testng] 01:23:22,077 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3555c8d5 - End of configuration. [testng] [2024-05-05 01:23:22,102] [pool-1-thread-9] Initializing /data/josiah/cell-Z39.C0.tiff: [testng] 01:23:22,103 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:23:22,103 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:22,103 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-05_01-23-22.log] [testng] 01:23:22,103 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2cebf5a8 - End of configuration. [testng] [2024-05-05 01:23:22,129] [pool-1-thread-8] Initializing /data/josh/jnb1s1_raw0242.TIF: [testng] 01:23:22,130 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:23:22,130 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:22,130 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-05_01-23-22.log] [testng] 01:23:22,130 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f7d784c - End of configuration. [testng] [2024-05-05 01:23:22,176] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C0_Z035.tif: [testng] 01:23:22,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:23:22,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:22,176 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-05_01-23-22.log] [testng] 01:23:22,177 |-INFO in ch.qos.logback.core.sift.SiftProcessor@159fb3d2 - End of configuration. [testng] [2024-05-05 01:23:22,202] [pool-1-thread-6] Initializing /data/david/200umbeads_stack_1fs.tif: [testng] 01:23:22,202 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:23:22,202 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:22,202 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-05_01-23-22.log] [testng] 01:23:22,203 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ede5839 - End of configuration. [testng] [2024-05-05 01:23:22,282] [pool-1-thread-5] Initializing /data/ascb/CYT-90_PasolliMousePanoramic_4800.tif: [testng] 01:23:22,282 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:23:22,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:22,283 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-05_01-23-22.log] [testng] 01:23:22,284 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7df5fb54 - End of configuration. [testng] [2024-05-05 01:23:22,329] [pool-1-thread-4] Initializing /data/lzw/Cortico-Striatal.tif: [testng] 01:23:22,330 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:23:22,330 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:22,330 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-05_01-23-22.log] [testng] 01:23:22,331 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68d58255 - End of configuration. [testng] [2024-05-05 01:23:22,362] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C0_Z036.tif: [testng] 01:23:22,362 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:23:22,362 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:22,363 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-05_01-23-22.log] [testng] 01:23:22,363 |-INFO in ch.qos.logback.core.sift.SiftProcessor@fa97f68 - End of configuration. [testng] [2024-05-05 01:23:22,390] [pool-1-thread-2] Initializing /data/brian/Alx-488-pk.tif: [testng] 01:23:22,390 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:23:22,390 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:22,390 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-05_01-23-22.log] [testng] 01:23:22,391 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cf60f51 - End of configuration. [testng] [2024-05-05 01:23:23,774] [pool-1-thread-11] Initializing /data/brian/retina/retina_C1_Z026.tif: [testng] [2024-05-05 01:23:23,803] [pool-1-thread-12] Initializing /data/brian/retina/retina_C1_Z057.tif: [testng] [2024-05-05 01:23:24,459] [pool-1-thread-10] Initializing /data/brian/retina/retina_C0_Z034.tif: [testng] [2024-05-05 01:23:24,485] [pool-1-thread-1] Initializing /data/brian/PlantCell/PlantCell_C0_Z031.tif: [testng] [2024-05-05 01:23:24,524] [pool-1-thread-7] Initializing /data/brian/retina/retina_C1_Z002.tif: [testng] [2024-05-05 01:23:24,548] [pool-1-thread-3] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-strips-32.tiff: [testng] [2024-05-05 01:23:24,567] [pool-1-thread-9] Initializing /data/josiah/cell-Z38.C1.tiff: [testng] [2024-05-05 01:23:24,603] [pool-1-thread-2] Initializing /data/curtis/map/brown-fox: [testng] [2024-05-05 01:23:24,768] [pool-1-thread-8] Initializing /data/ascb/CYT-43_HowellAcinarUnlabeled_4800.tif: [testng] [2024-05-05 01:23:24,952] [pool-1-thread-6] Initializing /data/brian/MFGTMP_080902150001t001B02f73d1.TIF: [testng] [2024-05-05 01:23:25,034] [pool-1-thread-4] Initializing /data/brian/retina/retina_C0_Z003.tif: [testng] [2024-05-05 01:23:25,156] [pool-1-thread-11] Initializing /data/ascb/bad/FND-18_FawcettGolgi_4800.tif: [testng] [2024-05-05 01:23:25,238] [pool-1-thread-12] Initializing /data/brian/retina/retina_C0_Z013.tif: [testng] [2024-05-05 01:23:25,577] [pool-1-thread-2] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-64x48.tiff: [testng] [2024-05-05 01:23:25,642] [pool-1-thread-10] Initializing /data/josh/jnb1s1_raw0219.TIF: [testng] [2024-05-05 01:23:25,693] [pool-1-thread-3] Initializing /data/curtis/test3.tiff: [testng] [2024-05-05 01:23:25,726] [pool-1-thread-7] Initializing /data/brian/retina/retina_C1_Z015.tif: [testng] [2024-05-05 01:23:25,750] [pool-1-thread-1] Initializing /data/brian/retina/retina_C0_Z018.tif: [testng] [2024-05-05 01:23:25,776] [pool-1-thread-4] Initializing /data/ascb/FND-15_PorterFast_4800.tif: [testng] [2024-05-05 01:23:27,106] [pool-1-thread-9] Initializing /data/josiah/cell-Z34.C1.tiff: [testng] [2024-05-05 01:23:27,410] [pool-1-thread-12] Initializing /data/jeff/test36b.tif: [testng] [2024-05-05 01:23:27,532] [pool-1-thread-2] Initializing /data/qa-4833/cjw_tiffs/23273992_Figure 6_NA_NA_22159.TIF: [testng] [2024-05-05 01:23:27,694] [pool-1-thread-3] Initializing /data/michael/MFISH.tiff: [testng] [2024-05-05 01:23:27,759] [pool-1-thread-1] Initializing /data/brian/retina/retina_C1_Z006.tif: [testng] [2024-05-05 01:23:27,806] [pool-1-thread-7] Initializing /data/brian/retina/retina_C1_Z058.tif: [testng] [2024-05-05 01:23:27,888] [pool-1-thread-6] Initializing /data/josh/jnb1s1_raw0218.TIF: [testng] [2024-05-05 01:23:27,954] [pool-1-thread-9] Initializing /data/brian/retina/retina_C0_Z022.tif: [testng] [2024-05-05 01:23:28,007] [pool-1-thread-12] Initializing /data/samples/cielab/Ski_TC8-03_ROMM.tif: [testng] [2024-05-05 01:23:28,286] [pool-1-thread-10] Initializing /data/big-images/4kx4k.tif: [testng] [2024-05-05 01:23:28,551] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C1_Z021.tif: [testng] [2024-05-05 01:23:28,582] [pool-1-thread-1] Initializing /data/brian/PlantCell/PlantCell_C0_Z014.tif: [testng] [2024-05-05 01:23:28,898] [pool-1-thread-3] Initializing /data/julien/FesquetPRC1YFP_TUB_DNA.TIF: [testng] [2024-05-05 01:23:28,929] [pool-1-thread-9] Initializing /data/samples/melissa/imagej-4gb/4gb-test&sizeX=1024&sizeY=1024&pixelType=uint16&sizeC=2050.fake: [testng] [2024-05-05 01:23:29,214] [pool-1-thread-6] Initializing /data/boguslaw/Arabidopsis.tiff: [testng] [2024-05-05 01:23:29,324] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C0_Z030.tif: [testng] [2024-05-05 01:23:29,354] [pool-1-thread-1] Initializing /data/josh/ZProjection of stack.tif: [testng] [2024-05-05 01:23:29,923] [pool-1-thread-7] Initializing /data/josiah/cell-Z22.C0.tiff: [testng] [2024-05-05 01:23:30,057] [pool-1-thread-2] Initializing /data/lee/r03c03f01p01rc2-ch1sk1fk1fl1.tiff: [testng] [2024-05-05 01:23:30,534] [pool-1-thread-9] Initializing /data/josh/jnb1s1_raw0209.TIF: [testng] [2024-05-05 01:23:30,581] [pool-1-thread-5] Initializing /data/brian/retina/retina_C1_Z031.tif: [testng] [2024-05-05 01:23:30,607] [pool-1-thread-6] Initializing /data/ascb/CYT-92_PasolliMouse1b_4800.tif: [testng] [2024-05-05 01:23:30,657] [pool-1-thread-1] Initializing /data/public/condensation/B12.pattern5.tif: [testng] [2024-05-05 01:23:30,703] [pool-1-thread-7] Initializing /data/josh/jnb1s1_raw0212.TIF: [testng] [2024-05-05 01:23:30,809] [pool-1-thread-3] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo.tif: [testng] [2024-05-05 01:23:31,676] [pool-1-thread-5] Initializing /data/brian/PlantCell/PlantCell_C1_Z007.tif: [testng] [2024-05-05 01:23:31,832] [pool-1-thread-1] Initializing /data/public/condensation/C4.pattern1.tif: [testng] [2024-05-05 01:23:32,027] 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[2024-05-05 01:24:49,869] [pool-1-thread-3] Initializing /data/julien/Genevievevanille.TIF: [testng] [2024-05-05 01:24:49,926] [pool-1-thread-8] Initializing /data/julien/CRBMquadtour.tif: [testng] [2024-05-05 01:24:53,230] [pool-1-thread-6] Initializing /data/brian/retina/retina_C1_Z035.tif: [testng] [2024-05-05 01:24:53,304] [pool-1-thread-5] Initializing /data/josiah/cell-Z1.C0.tiff: [testng] [2024-05-05 01:24:53,531] [pool-1-thread-9] Initializing /data/brian/retina/retina_C0_Z063.tif: [testng] [2024-05-05 01:24:53,658] [pool-1-thread-6] Initializing /data/matt/CR20070824-002_6202483715-06 003_0_P23_0Green.tif: [testng] [2024-05-05 01:24:53,854] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C0_Z006.tif: [testng] [2024-05-05 01:24:53,892] [pool-1-thread-5] Initializing /data/johan/Test1_12.tif: [testng] [2024-05-05 01:24:54,207] [pool-1-thread-9] Initializing /data/brian/retina/retina_C1_Z051.tif: [testng] [2024-05-05 01:24:54,274] [pool-1-thread-10] Initializing 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[testng] [2024-05-05 01:25:09,523] [pool-1-thread-6] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-32x16.tiff: [testng] [2024-05-05 01:25:09,785] [pool-1-thread-4] Initializing /data/brian/retina/retina_C1_Z023.tif: [testng] [2024-05-05 01:25:09,835] [pool-1-thread-1] Initializing /data/chris-wood/ticket-10050/cjw_stowers.tif: [testng] [2024-05-05 01:25:09,908] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C1_Z023.tif: [testng] [2024-05-05 01:25:09,978] [pool-1-thread-6] Initializing /data/josiah/cell-Z10.C0.tiff: [testng] [2024-05-05 01:25:10,220] [pool-1-thread-4] Initializing /data/josiah/cell-Z31.C1.tiff: [testng] [2024-05-05 01:25:10,462] [pool-1-thread-12] Initializing /data/brian/retina/retina_C0_Z055.tif: [testng] [2024-05-05 01:25:10,503] [pool-1-thread-6] Initializing /data/josh/jnb1s1_raw0247.TIF: [testng] [2024-05-05 01:25:10,812] [pool-1-thread-4] Initializing /data/brian/retina/retina_C1_Z047.tif: [testng] [2024-05-05 01:25:11,002] [pool-1-thread-12] Initializing /data/public/condensation/C4.pattern6.tif: [testng] [2024-05-05 01:25:11,417] [pool-1-thread-4] Initializing /data/jonathan/Cut-1_001.tif: [testng] [2024-05-05 01:25:11,612] [pool-1-thread-11] Initializing /data/misc/mri.eps: [testng] [2024-05-05 01:25:11,846] [pool-1-thread-6] Initializing /data/misc/mri.avi: [testng] [2024-05-05 01:25:11,881] [pool-1-thread-12] Initializing /data/public/condensation/E4.pattern8.tif: [testng] [2024-05-05 01:25:12,096] [pool-1-thread-11] Initializing /data/brian/retina/retina_C1_Z056.tif: [testng] [2024-05-05 01:25:12,119] [pool-1-thread-6] Initializing /data/josiah/cell-Z26.C0.tiff: [testng] [2024-05-05 01:25:12,793] [pool-1-thread-11] Initializing /data/samples/melissa/imagej-4gb/4gb-imagej.tif: [testng] [2024-05-05 01:25:12,861] [pool-1-thread-12] Initializing /data/curtis/blastocyste.tif: [testng] [2024-05-05 01:25:13,061] [pool-1-thread-6] Initializing /data/ascb/FND-1_PorterClaudeFullamFirst_4800.tif: [testng] [2024-05-05 01:25:13,484] [pool-1-thread-12] Initializing /data/josh/jnb1s1_raw0225.TIF: [testng] [2024-05-05 01:25:13,847] [pool-1-thread-4] Initializing /data/samples/cielab/Ski_TC8-03_sRGB_lab.tif: [testng] [2024-05-05 01:25:14,363] [pool-1-thread-11] Initializing /data/jae/25Jan10_MDCK_2R_3Dstack_60x_1.tif: [testng] [2024-05-05 01:25:14,417] [pool-1-thread-9] Initializing /data/public/condensation/E4.pattern6.tif: [testng] [2024-05-05 01:25:14,651] [pool-1-thread-12] Initializing /data/josh/NESb_C2_TP7.tiff: [testng] [2024-05-05 01:25:15,135] [pool-1-thread-9] Initializing /data/brian/retina/retina_C0_Z037.tif: [testng] [2024-05-05 01:25:15,463] [pool-1-thread-9] Initializing /data/brian/retina/retina_C1_Z053.tif: [testng] [2024-05-05 01:25:15,774] [pool-1-thread-12] Initializing /data/josiah/cell-Z31.C0.tiff: [testng] [2024-05-05 01:25:15,798] [pool-1-thread-9] Initializing /data/brian/PlantCell/PlantCell_C1_Z029.tif: [testng] [2024-05-05 01:25:16,175] [pool-1-thread-9] Initializing /data/public/libtiff/jello.tif: [testng] [2024-05-05 01:25:16,226] [pool-1-thread-12] Initializing /data/josh/jnb1s1_raw0206.TIF: [testng] [2024-05-05 01:25:16,270] [pool-1-thread-11] Initializing /data/brian/retina/retina_C1_Z014.tif: [testng] [2024-05-05 01:25:16,312] [pool-1-thread-10] Initializing /data/samples/melissa/long8-subfiletype/Cell_Colony.tif: [testng] [2024-05-05 01:25:16,608] [pool-1-thread-9] Initializing /data/josh/jnb1s1_raw0231.TIF: [testng] [2024-05-05 01:25:16,668] [pool-1-thread-11] Initializing /data/brian/retina/retina_C1_Z027.tif: [testng] [2024-05-05 01:25:16,810] [pool-1-thread-10] Initializing /data/brian/PlantCell/PlantCell_C1_Z033.tif: [testng] [2024-05-05 01:25:16,851] [pool-1-thread-6] Initializing /data/tobias/test002_1.tif: [testng] [2024-05-05 01:25:17,081] [pool-1-thread-12] Initializing /data/tom-kazimiers/test_exiftool2_resave.tiff: [testng] [2024-05-05 01:25:17,111] [pool-1-thread-11] Initializing 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01:25:21,541] [pool-1-thread-11] Initializing /data/brian/insight.tiff: [testng] [2024-05-05 01:25:21,590] [pool-1-thread-10] Initializing /data/brian/PlantCell/PlantCell_C1_Z028.tif: [testng] [2024-05-05 01:25:21,881] [pool-1-thread-6] Initializing /data/brian/retina/retina_C1_Z022.tif: [testng] [2024-05-05 01:25:21,986] [pool-1-thread-2] Initializing /data/ascb/FND-28a_PaladeHepatocyteLabeled_4800.tif: [testng] [2024-05-05 01:25:23,378] [pool-1-thread-10] Initializing /data/ascb/FND-10_PorterMitochondria_4800.tif: [testng] [2024-05-05 01:25:25,002] [pool-1-thread-6] Initializing /data/josh/NESb_C2_TP8.tiff: [testng] [2024-05-05 01:25:25,301] [pool-1-thread-3] Initializing /data/brian/retina/retina_C1_Z004.tif: [testng] [2024-05-05 01:25:25,643] [pool-1-thread-3] Initializing /data/public/libtiff/jim___cg.tif: [testng] [2024-05-05 01:25:25,877] [pool-1-thread-6] Initializing /data/brian/retina/retina_C0_Z028.tif: [testng] [2024-05-05 01:25:25,990] [pool-1-thread-3] Initializing 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01:25:29,538] [pool-1-thread-9] Initializing /data/wayne/Rockies-rgb.tif: [testng] [2024-05-05 01:25:29,724] [pool-1-thread-5] Initializing /data/zstd-compressed/yeast.tif: [testng] [2024-05-05 01:25:29,871] [pool-1-thread-3] Initializing /data/damian/36m.tiff: [testng] [2024-05-05 01:25:29,945] [pool-1-thread-1] Initializing /data/imagesc-50416/_Fadeh_Alonzy_OD_Lower__M5_A8_F950nmD_I022_20130424115201.tiff: [testng] [2024-05-05 01:25:30,117] [pool-1-thread-4] Initializing /data/jae/Rat_Hippocampal_Neuron.tif: [testng] [2024-05-05 01:25:30,226] [pool-1-thread-6] Initializing /data/brian/retina/retina_C0_Z051.tif: [testng] [2024-05-05 01:25:30,501] [pool-1-thread-3] Initializing /data/josh/jnb1s1_raw0228.TIF: [testng] [2024-05-05 01:25:30,671] [pool-1-thread-6] Initializing /data/brian/retina/retina_C1_Z037.tif: [testng] [2024-05-05 01:25:30,933] [pool-1-thread-9] Initializing /data/josh/NESb_C2_TP10.tiff: [testng] [2024-05-05 01:25:31,032] [pool-1-thread-5] Initializing 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Initializing /data/josh/jnb1s1_raw0246.TIF: [testng] [2024-05-05 01:25:33,336] [pool-1-thread-4] Initializing /data/brian/PlantCell/PlantCell_C0_Z023.tif: [testng] [2024-05-05 01:25:33,373] [pool-1-thread-3] Initializing /data/brian/retina/retina_C1_Z060.tif: [testng] [2024-05-05 01:25:33,466] [pool-1-thread-5] Initializing /data/tamjid/10_para-stage 1.tiff: [testng] [2024-05-05 01:25:33,603] [pool-1-thread-9] Initializing /data/brian/PlantCell/PlantCell_C0_Z005.tif: [testng] [2024-05-05 01:25:33,700] [pool-1-thread-11] Initializing /data/ascb/FND-25_PaladeGroup_4800.tif: [testng] [2024-05-05 01:25:33,786] [pool-1-thread-3] Initializing /data/josh/NESb_C2_TP6.tiff: [testng] [2024-05-05 01:25:33,861] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C1_Z020.tif: [testng] [2024-05-05 01:25:33,918] [pool-1-thread-4] Initializing /data/julien/MarjorieCoisy1.TIF: [testng] [2024-05-05 01:25:34,156] [pool-1-thread-5] Initializing /data/josiah/cell-Z20.C1.tiff: [testng] [2024-05-05 01:25:34,184] [pool-1-thread-9] Initializing /data/wayne/Rockies-8bit-indexed.tif: [testng] [2024-05-05 01:25:34,220] [pool-1-thread-6] Initializing /data/curtis/itk/MG63_0_1.tif: [testng] [2024-05-05 01:25:34,413] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C0_Z003.tif: [testng] [2024-05-05 01:25:34,729] [pool-1-thread-3] Initializing /data/brian/061124MitogreenDIV3Cell2-1 copy.tif: [testng] [2024-05-05 01:25:34,781] [pool-1-thread-5] Initializing /data/josiah/cell-Z5.C1.tiff: [testng] [2024-05-05 01:25:34,813] [pool-1-thread-9] Initializing /data/brian/retina/retina_C0_Z035.tif: [testng] [2024-05-05 01:25:34,834] [pool-1-thread-7] Initializing /data/brian/retina/retina_C1_Z017.tif: [testng] [2024-05-05 01:25:34,907] [pool-1-thread-6] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-64x48.tiff: [testng] [2024-05-05 01:25:34,961] [pool-1-thread-4] Initializing /data/brian/retina/retina_C1_Z010.tif: [testng] [2024-05-05 01:25:35,771] [pool-1-thread-9] Initializing /data/brian/PlantCell/PlantCell_C1_Z004.tif: [testng] [2024-05-05 01:25:35,849] [pool-1-thread-6] Initializing /data/josiah/cell-Z19.C0.tiff: [testng] [2024-05-05 01:25:35,877] [pool-1-thread-7] Initializing /data/brian/retina/retina_C1_Z061.tif: [testng] [2024-05-05 01:25:35,922] [pool-1-thread-4] Initializing /data/glen/742015a20x3middle16bit.tif: [testng] [2024-05-05 01:25:35,984] [pool-1-thread-5] Initializing /data/wayne/MyoblastCells-8bit.tiff: [testng] [2024-05-05 01:25:36,027] [pool-1-thread-3] Initializing /data/chris-lesiak/half-float.tiff: [testng] [2024-05-05 01:25:36,105] [pool-1-thread-1] Initializing /data/ascb/CYT-35_FriendOsmiumEpididymis_4800.tif: [testng] [2024-05-05 01:25:36,289] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C1_Z030.tif: [testng] [2024-05-05 01:25:36,334] [pool-1-thread-9] Initializing /data/brian/retina/retina_C0_Z033.tif: [testng] [2024-05-05 01:25:36,430] [pool-1-thread-6] Initializing /data/josh/NESa_C2_TP1.tiff: [testng] [2024-05-05 01:25:36,784] [pool-1-thread-5] Initializing /data/public/condensation/C4.pattern.tif: [testng] [2024-05-05 01:25:36,846] [pool-1-thread-4] Initializing /data/brian/retina/retina_C1_Z028.tif: [testng] [2024-05-05 01:25:36,962] [pool-1-thread-3] Initializing /data/josh/jnb1s1_raw0217.TIF: [testng] [2024-05-05 01:25:37,114] [pool-1-thread-9] Initializing /data/josiah/cell-Z30.C1.tiff: [testng] [2024-05-05 01:25:37,152] [pool-1-thread-7] Initializing /data/christine/Image5D_4color test stack/test stack.tif: [testng] [2024-05-05 01:25:37,290] [pool-1-thread-4] Initializing /data/wayne/clown-rgb.tif: [testng] [2024-05-05 01:25:37,616] [pool-1-thread-5] Initializing /data/ascb/FND-27_PaladeGolgi_4800.tif: [testng] [2024-05-05 01:25:37,735] [pool-1-thread-4] Initializing /data/public/libtiff/jim___ah.tif: [testng] [2024-05-05 01:25:37,779] [pool-1-thread-6] Initializing /data/josh/NESb_C2_TP5.tiff: [testng] [2024-05-05 01:25:37,844] [pool-1-thread-9] Initializing /data/brian/PlantCell/PlantCell_C1_Z034.tif: [testng] [2024-05-05 01:25:37,917] [pool-1-thread-7] Initializing /data/ascb/14312-p125A colocalization.tif: [testng] [2024-05-05 01:25:38,046] [pool-1-thread-3] Initializing /data/josh/jnb1s1_raw0239.TIF: [testng] [2024-05-05 01:25:38,500] [pool-1-thread-9] Initializing /data/josiah/cell-Z27.C0.tiff: [testng] [2024-05-05 01:25:38,651] [pool-1-thread-4] Initializing /data/harvey/NR_Giemsa_Sag_CTb_Retina.tif: [testng] [2024-05-05 01:25:38,852] [pool-1-thread-6] Initializing /data/ascb/CYT-49_FriendSecretoryPair_4800.tif: [testng] [2024-05-05 01:25:38,940] [pool-1-thread-7] Initializing /data/damian/15m.tiff: [testng] [2024-05-05 01:25:39,059] [pool-1-thread-9] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips_fourteen.tiff: [testng] [2024-05-05 01:25:39,086] [pool-1-thread-11] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-16x48.tiff: [testng] [2024-05-05 01:25:39,186] [pool-1-thread-3] Initializing /data/josh/jnb1s1_raw0207.TIF: [testng] [2024-05-05 01:25:39,468] [pool-1-thread-11] Initializing /data/josh/jnb1s1_raw0244.TIF: [testng] [2024-05-05 01:25:39,544] [pool-1-thread-9] Initializing /data/public/condensation/A6.pattern1.tif: [testng] [2024-05-05 01:25:39,609] [pool-1-thread-7] Initializing /data/samples/cielab/Ski_TC8-03_sRGB.tif: [testng] [2024-05-05 01:25:40,177] [pool-1-thread-3] Initializing /data/andrew/wibble-tmp4.tiff: [testng] [2024-05-05 01:25:40,258] [pool-1-thread-9] Initializing /data/brian/retina/retina_C0_Z048.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 38213, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 4 minutes 45 seconds Finished: SUCCESS