Console Output
+ export BASE_REPO=idr.openmicroscopy.org
+ BASE_REPO=idr.openmicroscopy.org
+ export BASE_BRANCH=master
+ BASE_BRANCH=master
+ export VERSION_LOG=/home/omero/workspace/IDRSITE-push/build/version.tsv
+ VERSION_LOG=/home/omero/workspace/IDRSITE-push/build/version.tsv
+ . build/venv/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ unset VIRTUAL_ENV_PROMPT
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/omero/workspace/IDRSITE-push/build/venv
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/home/omero/workspace/IDRSITE-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ PS1='(venv) '
++ export PS1
++ VIRTUAL_ENV_PROMPT='(venv) '
++ export VIRTUAL_ENV_PROMPT
++ hash -r
+ '[' merge_ci '!=' null ']'
+ export PUSH_BRANCH=merge_ci
+ PUSH_BRANCH=merge_ci
+ '[' null '!=' null ']'
+ export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment'
+ STATUS=success-only
+ MERGE_OPTIONS='-vvv --no-ask --reset --comment'
+ bash build/build-infra-master/recursive-merge
Merge base repository (no submodule updates)
2026-10-02 09:19:31,560 [ scc.config] DEBUG Found github.token
2026-10-02 09:19:31,561 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2026-10-02 09:19:31,869 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 09:19:32,355 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 09:19:32,797 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2026-10-02 09:19:32,797 [ scc.gh] DEBUG 5000 remaining from 5000 (Reset at 10:10
2026-10-02 09:19:32,798 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-02 09:19:32,809 [ scc.git] DEBUG Check current status
2026-10-02 09:19:32,810 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-02 09:19:32,833 [ scc.git] DEBUG 94915ef Merge pull request #229 from pwalczysko/remove-mybinder
2026-10-02 09:19:32,834 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-02 09:19:32,991 [ scc.config] DEBUG Found remote.origin.url
2026-10-02 09:19:33,397 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/idr/idr.openmicroscopy.org HTTP/1.1" 200 None
2026-10-02 09:19:34,028 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/IDR HTTP/1.1" 200 None
2026-10-02 09:19:34,474 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/IDR/members HTTP/1.1" 200 None
2026-10-02 09:19:34,475 [ scc.git] DEBUG Resetting...
2026-10-02 09:19:34,475 [ scc.git] DEBUG Calling 'git reset --hard HEAD'
2026-10-02 09:19:34,640 [ scc.git] DEBUG HEAD is now at 94915ef Merge pull request #229 from pwalczysko/remove-mybinder
2026-10-02 09:19:34,641 [ scc.git] DEBUG Calling 'git submodule update --recursive'
2026-10-02 09:19:34,765 [ scc.git] DEBUG Check current status
2026-10-02 09:19:34,765 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-02 09:19:34,783 [ scc.git] DEBUG 94915ef Merge pull request #229 from pwalczysko/remove-mybinder
2026-10-02 09:19:34,785 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-02 09:19:34,902 [ scc.merge] INFO Merging Pull Request(s) based on master
2026-10-02 09:19:34,902 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
2026-10-02 09:19:34,902 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
2026-10-02 09:19:34,902 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
2026-10-02 09:19:34,902 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
2026-10-02 09:19:34,902 [ scc.repo] DEBUG ## PRs found:
2026-10-02 09:19:35,197 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/pulls HTTP/1.1" 200 None
2026-10-02 09:19:35,801 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/issues/225 HTTP/1.1" 200 None
2026-10-02 09:19:36,432 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/issues/225/comments HTTP/1.1" 200 None
2026-10-02 09:19:36,433 [ scc.repo] DEBUG - PR 225 will-moore 'Fix idr0106 to download from ftp instead of github'
2026-10-02 09:19:36,433 [ scc.repo] DEBUG ## Branches found:
2026-10-02 09:19:36,433 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 09:19:36,433 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 09:19:36,450 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-10-02 09:19:36,482 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-02 09:19:36,482 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-10-02 09:19:36,508 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-10-02 09:19:36,591 [ scc.git] DEBUG Already up to date.
2026-10-02 09:19:36,591 [ scc.git] DEBUG Calling 'git fetch origin pull/225/head'
2026-10-02 09:19:37,896 [ scc.git] DEBUG From https://github.com/idr/idr.openmicroscopy.org
2026-10-02 09:19:37,896 [ scc.git] DEBUG * branch refs/pull/225/head -> FETCH_HEAD
2026-10-02 09:19:37,938 [ scc.git] DEBUG ## Unique users: []
2026-10-02 09:19:37,938 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 09:19:37,938 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 09:19:37,956 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...f920c7f9b05e5c62b08a3d667e95bb4ee9112ab8'
2026-10-02 09:19:38,007 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 09:19:38,028 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 225 (Fix idr0106 to download from ftp instead of github) f920c7f9b05e5c62b08a3d667e95bb4ee9112ab8'
2026-10-02 09:19:38,340 [ scc.git] DEBUG Auto-merging _data/download_urls.tsv
2026-10-02 09:19:38,340 [ scc.git] DEBUG CONFLICT (content): Merge conflict in _data/download_urls.tsv
2026-10-02 09:19:38,374 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-10-02 09:19:38,375 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-10-02 09:19:38,433 [ scc.git] DEBUG Calling 'git reset --hard 94915ef467774ab056f6df88b2b5d944a6a61c4b'
2026-10-02 09:19:38,619 [ scc.git] DEBUG HEAD is now at 94915ef Merge pull request #229 from pwalczysko/remove-mybinder
2026-10-02 09:19:38,821 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 09:19:38,822 [ scc.git] DEBUG Calling 'git merge-base 94915ef467774ab056f6df88b2b5d944a6a61c4b f920c7f9b05e5c62b08a3d667e95bb4ee9112ab8'
2026-10-02 09:19:38,887 [ scc.git] DEBUG Calling 'git diff --name-only 66e98c953258a512ae5d4c288d8b1cc88a9c6fb9..94915ef467774ab056f6df88b2b5d944a6a61c4b'
2026-10-02 09:19:38,916 [ scc.git] INFO - PR 225 will-moore 'Fix idr0106 to download from ftp instead of github'
Conflicting PR. Removed from build [IDRSITE-push#3](https://merge-ci.openmicroscopy.org/jenkins/job/IDRSITE-push/3/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/IDRSITE-push/3/consoleText) for more details.
Possible conflicts:
- Upstream changes
- _data/download_urls.tsv
--conflicts
2026-10-02 09:19:38,930 [ scc.config] DEBUG Found github.token
2026-10-02 09:19:38,930 [ scc.git] DEBUG Adding comment to issue #225.
2026-10-02 09:19:39,987 [urllib3.conn] DEBUG https://api.github.com:443 "POST /repos/IDR/idr.openmicroscopy.org/issues/225/comments HTTP/1.1" 201 2038
2026-10-02 09:19:39,988 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-02 09:19:40,108 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 09:19:40,108 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 09:19:40,119 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-02 09:19:40,190 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fcbd6ed7f90> has no local changes
2026-10-02 09:19:40,190 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone
Repository: idr/idr.openmicroscopy.org
Already up to date.
Conflicting PRs (not included):
- PR 225 will-moore 'Fix idr0106 to download from ftp instead of github'
Generated by IDRSITE-push#3 (https://merge-ci.openmicroscopy.org/jenkins/job/IDRSITE-push/3/)'
2026-10-02 09:19:40,345 [ scc.git] DEBUG [detached HEAD c5e58af] merge master -Dorg -Snone
2026-10-02 09:19:40,347 [ scc.merge] INFO Repository: idr/idr.openmicroscopy.org
2026-10-02 09:19:40,347 [ scc.merge] INFO Already up to date.
2026-10-02 09:19:40,347 [ scc.merge] INFO
2026-10-02 09:19:40,347 [ scc.merge] INFO Conflicting PRs (not included):
2026-10-02 09:19:40,347 [ scc.merge] INFO - PR 225 will-moore 'Fix idr0106 to download from ftp instead of github'
2026-10-02 09:19:40,347 [ scc.merge] INFO
2026-10-02 09:19:40,347 [ scc.merge] DEBUG Cleaning remote branches created for merging
2026-10-02 09:19:40,347 [ scc.git] DEBUG Calling 'git remote'
Merge all submodules2026-10-02 09:19:41,756 [ scc.config] DEBUG Found github.token
2026-10-02 09:19:41,758 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2026-10-02 09:19:42,087 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 09:19:42,584 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 09:19:43,095 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2026-10-02 09:19:43,096 [ scc.gh] DEBUG 4997 remaining from 5000 (Reset at 10:10
2026-10-02 09:19:43,096 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-02 09:19:43,107 [ scc.git] DEBUG Check current status
2026-10-02 09:19:43,107 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-02 09:19:43,126 [ scc.git] DEBUG c5e58af merge master -Dorg -Snone
2026-10-02 09:19:43,127 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-02 09:19:43,240 [ scc.config] DEBUG Found remote.origin.url
2026-10-02 09:19:43,704 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/idr/idr.openmicroscopy.org HTTP/1.1" 200 None
2026-10-02 09:19:44,291 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/IDR HTTP/1.1" 200 None
2026-10-02 09:19:44,796 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/IDR/members HTTP/1.1" 200 None
2026-10-02 09:19:44,797 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-02 09:19:44,900 [ scc.git] DEBUG Resetting...
2026-10-02 09:19:44,900 [ scc.git] DEBUG Calling 'git reset --hard HEAD'
2026-10-02 09:19:45,015 [ scc.git] DEBUG HEAD is now at c5e58af merge master -Dorg -Snone
2026-10-02 09:19:45,016 [ scc.git] DEBUG Calling 'git submodule update --recursive'
2026-10-02 09:19:45,165 [ scc.git] DEBUG Check current status
2026-10-02 09:19:45,165 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-02 09:19:45,190 [ scc.git] DEBUG c5e58af merge master -Dorg -Snone
2026-10-02 09:19:45,192 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-02 09:19:45,322 [ scc.merge] INFO Merging Pull Request(s) based on master
2026-10-02 09:19:45,322 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
2026-10-02 09:19:45,322 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
2026-10-02 09:19:45,322 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
2026-10-02 09:19:45,322 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
2026-10-02 09:19:45,322 [ scc.merge] INFO Excluding Pull Request(s) without successful status
2026-10-02 09:19:45,322 [ scc.repo] DEBUG ## PRs found:
2026-10-02 09:19:45,672 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/pulls HTTP/1.1" 200 None
2026-10-02 09:19:46,287 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/issues/225 HTTP/1.1" 200 None
2026-10-02 09:19:46,833 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/issues/225/comments HTTP/1.1" 200 None
2026-10-02 09:19:47,446 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/commits/f920c7f9b05e5c62b08a3d667e95bb4ee9112ab8?page=1 HTTP/1.1" 200 None
2026-10-02 09:19:48,062 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/commits/f920c7f9b05e5c62b08a3d667e95bb4ee9112ab8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-02 09:19:48,591 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/commits/f920c7f9b05e5c62b08a3d667e95bb4ee9112ab8/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-10-02 09:19:49,077 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/commits/f920c7f9b05e5c62b08a3d667e95bb4ee9112ab8?page=1 HTTP/1.1" 200 None
2026-10-02 09:19:49,548 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/statuses/f920c7f9b05e5c62b08a3d667e95bb4ee9112ab8?per_page=1 HTTP/1.1" 200 2
2026-10-02 09:19:49,549 [ scc.repo] DEBUG - PR 225 will-moore 'Fix idr0106 to download from ftp instead of github'
2026-10-02 09:19:49,549 [ scc.repo] DEBUG ## Branches found:
2026-10-02 09:19:49,549 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 09:19:49,549 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 09:19:49,561 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-10-02 09:19:49,579 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-02 09:19:49,579 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-10-02 09:19:49,598 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-10-02 09:19:49,648 [ scc.git] DEBUG Already up to date.
2026-10-02 09:19:49,648 [ scc.git] DEBUG Calling 'git fetch origin pull/225/head'
2026-10-02 09:19:50,512 [ scc.git] DEBUG From https://github.com/idr/idr.openmicroscopy.org
2026-10-02 09:19:50,512 [ scc.git] DEBUG * branch refs/pull/225/head -> FETCH_HEAD
2026-10-02 09:19:50,547 [ scc.git] DEBUG ## Unique users: []
2026-10-02 09:19:50,547 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 09:19:50,547 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 09:19:50,560 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...f920c7f9b05e5c62b08a3d667e95bb4ee9112ab8'
2026-10-02 09:19:50,606 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 09:19:50,619 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 225 (Fix idr0106 to download from ftp instead of github) f920c7f9b05e5c62b08a3d667e95bb4ee9112ab8'
2026-10-02 09:19:50,755 [ scc.git] DEBUG Auto-merging _data/download_urls.tsv
2026-10-02 09:19:50,755 [ scc.git] DEBUG CONFLICT (content): Merge conflict in _data/download_urls.tsv
2026-10-02 09:19:50,777 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-10-02 09:19:50,779 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-10-02 09:19:50,805 [ scc.git] DEBUG Calling 'git reset --hard c5e58af6c5eadb3c04fb3e25fe91c460f274b19d'
2026-10-02 09:19:50,936 [ scc.git] DEBUG HEAD is now at c5e58af merge master -Dorg -Snone
2026-10-02 09:19:51,135 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-02 09:19:51,136 [ scc.git] DEBUG Calling 'git merge-base c5e58af6c5eadb3c04fb3e25fe91c460f274b19d f920c7f9b05e5c62b08a3d667e95bb4ee9112ab8'
2026-10-02 09:19:51,168 [ scc.git] DEBUG Calling 'git diff --name-only 66e98c953258a512ae5d4c288d8b1cc88a9c6fb9..c5e58af6c5eadb3c04fb3e25fe91c460f274b19d'
2026-10-02 09:19:51,188 [ scc.git] INFO - PR 225 will-moore 'Fix idr0106 to download from ftp instead of github'
Conflicting PR. Removed from build [IDRSITE-push#3](https://merge-ci.openmicroscopy.org/jenkins/job/IDRSITE-push/3/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/IDRSITE-push/3/consoleText) for more details.
Possible conflicts:
- Upstream changes
- _data/download_urls.tsv
--conflicts
2026-10-02 09:19:51,209 [ scc.config] DEBUG Found github.token
2026-10-02 09:19:51,209 [ scc.git] DEBUG Not adding comment to issue #225, already --conflicts.
2026-10-02 09:19:51,209 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-02 09:19:51,339 [ scc.git] DEBUG Get sha1 of %s
2026-10-02 09:19:51,339 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-02 09:19:51,354 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-02 09:19:51,493 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-02 09:19:51,579 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f4e2e2c4050> has no local changes
2026-10-02 09:19:51,579 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: idr/idr.openmicroscopy.org
Already up to date.
Conflicting PRs (not included):
- PR 225 will-moore 'Fix idr0106 to download from ftp instead of github'
Generated by IDRSITE-push#3 (https://merge-ci.openmicroscopy.org/jenkins/job/IDRSITE-push/3/)'
2026-10-02 09:19:51,775 [ scc.git] DEBUG [detached HEAD b9a4405] merge master -Dorg -Ssuccess-only
2026-10-02 09:19:51,777 [ scc.merge] INFO Repository: idr/idr.openmicroscopy.org
2026-10-02 09:19:51,777 [ scc.merge] INFO Already up to date.
2026-10-02 09:19:51,777 [ scc.merge] INFO
2026-10-02 09:19:51,777 [ scc.merge] INFO Conflicting PRs (not included):
2026-10-02 09:19:51,777 [ scc.merge] INFO - PR 225 will-moore 'Fix idr0106 to download from ftp instead of github'
2026-10-02 09:19:51,777 [ scc.merge] INFO
2026-10-02 09:19:51,777 [ scc.merge] DEBUG Cleaning remote branches created for merging
2026-10-02 09:19:51,777 [ scc.git] DEBUG Calling 'git remote'
Update component versions
grep: build.gradle: No such file or directory
grep: settings.gradle: No such file or directory
grep: build.gradle: No such file or directory
grep: build.gradle: No such file or directory
Up-to-date:
Commit all component version changes
HEAD detached from 94915ef
nothing to commit, working tree clean
2026-10-02 09:19:59,231 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/idr.openmicroscopy.org/tree/merge_ci
