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+ export BASE_REPO=idr.openmicroscopy.org
+ BASE_REPO=idr.openmicroscopy.org
+ export BASE_BRANCH=master
+ BASE_BRANCH=master
+ export VERSION_LOG=/home/omero/workspace/IDRSITE-push/build/version.tsv
+ VERSION_LOG=/home/omero/workspace/IDRSITE-push/build/version.tsv
+ . build/venv/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ unset VIRTUAL_ENV_PROMPT
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/omero/workspace/IDRSITE-push/build/venv
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/home/omero/workspace/IDRSITE-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ PS1='(venv) '
++ export PS1
++ VIRTUAL_ENV_PROMPT='(venv) '
++ export VIRTUAL_ENV_PROMPT
++ hash -r
+ '[' merge_ci '!=' null ']'
+ export PUSH_BRANCH=merge_ci
+ PUSH_BRANCH=merge_ci
+ '[' null '!=' null ']'
+ export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment'
+ STATUS=success-only
+ MERGE_OPTIONS='-vvv --no-ask --reset --comment'
+ bash build/build-infra-master/recursive-merge
Merge base repository (no submodule updates)
2026-10-03 04:18:19,915 [  scc.config] DEBUG Found github.token
2026-10-03 04:18:19,917 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2026-10-03 04:18:20,161 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-03 04:18:20,605 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-03 04:18:21,025 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2026-10-03 04:18:21,026 [      scc.gh] DEBUG 5000 remaining from 5000 (Reset at 05:10
2026-10-03 04:18:21,026 [     scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-03 04:18:21,035 [     scc.git] DEBUG Check current status
2026-10-03 04:18:21,035 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-03 04:18:21,060 [     scc.git] DEBUG 94915ef Merge pull request #229 from pwalczysko/remove-mybinder
2026-10-03 04:18:21,061 [     scc.git] DEBUG Calling 'git submodule status'
2026-10-03 04:18:21,241 [  scc.config] DEBUG Found remote.origin.url
2026-10-03 04:18:21,562 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/idr/idr.openmicroscopy.org HTTP/1.1" 200 None
2026-10-03 04:18:22,067 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/IDR HTTP/1.1" 200 None
2026-10-03 04:18:22,511 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/IDR/members HTTP/1.1" 200 None
2026-10-03 04:18:22,512 [     scc.git] DEBUG Resetting...
2026-10-03 04:18:22,512 [     scc.git] DEBUG Calling 'git reset --hard HEAD'
2026-10-03 04:18:22,737 [     scc.git] DEBUG HEAD is now at 94915ef Merge pull request #229 from pwalczysko/remove-mybinder
2026-10-03 04:18:22,739 [     scc.git] DEBUG Calling 'git submodule update --recursive'
2026-10-03 04:18:22,929 [     scc.git] DEBUG Check current status
2026-10-03 04:18:22,929 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-03 04:18:22,960 [     scc.git] DEBUG 94915ef Merge pull request #229 from pwalczysko/remove-mybinder
2026-10-03 04:18:22,962 [     scc.git] DEBUG Calling 'git submodule status'
2026-10-03 04:18:23,103 [   scc.merge] INFO  Merging Pull Request(s) based on master
2026-10-03 04:18:23,103 [   scc.merge] INFO  Including Pull Request(s) opened by any public member of the organization
2026-10-03 04:18:23,103 [   scc.merge] INFO  Including Pull Request(s) labelled as include or dependencies
2026-10-03 04:18:23,103 [   scc.merge] INFO  Excluding Pull Request(s) staged as draft
2026-10-03 04:18:23,103 [   scc.merge] INFO  Excluding Pull Request(s) labelled as exclude or breaking
2026-10-03 04:18:23,103 [    scc.repo] DEBUG ## PRs found:
2026-10-03 04:18:23,418 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/pulls HTTP/1.1" 200 None
2026-10-03 04:18:23,908 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/issues/225 HTTP/1.1" 200 None
2026-10-03 04:18:24,436 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/issues/225/comments HTTP/1.1" 200 None
2026-10-03 04:18:24,438 [    scc.repo] DEBUG   - PR 225 will-moore 'Fix idr0106 to download from ftp instead of github'
2026-10-03 04:18:24,438 [    scc.repo] DEBUG ## Branches found:
2026-10-03 04:18:24,438 [     scc.git] DEBUG Get sha1 of %s
2026-10-03 04:18:24,438 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-03 04:18:24,450 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-10-03 04:18:24,481 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-03 04:18:24,481 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-10-03 04:18:24,516 [     scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-10-03 04:18:24,605 [     scc.git] DEBUG Already up to date.

2026-10-03 04:18:24,605 [     scc.git] DEBUG Calling 'git fetch origin pull/225/head'
2026-10-03 04:18:26,567 [     scc.git] DEBUG From https://github.com/idr/idr.openmicroscopy.org
2026-10-03 04:18:26,567 [     scc.git] DEBUG  * branch            refs/pull/225/head -> FETCH_HEAD
2026-10-03 04:18:26,597 [     scc.git] DEBUG ## Unique users: []
2026-10-03 04:18:26,597 [     scc.git] DEBUG Get sha1 of %s
2026-10-03 04:18:26,597 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-03 04:18:26,619 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...6f494af3a2b57249d4f647d6abea2d46e25beae5'
2026-10-03 04:18:26,677 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-03 04:18:26,694 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 225 (Fix idr0106 to download from ftp instead of github) 6f494af3a2b57249d4f647d6abea2d46e25beae5'
2026-10-03 04:18:27,020 [     scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-03 04:18:27,117 [     scc.git] DEBUG  _data/download_urls.tsv | 6 +++---
2026-10-03 04:18:27,117 [     scc.git] DEBUG  1 file changed, 3 insertions(+), 3 deletions(-)
2026-10-03 04:18:27,316 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-03 04:18:27,317 [     scc.git] DEBUG Resolving previous conflict on Pull Request #225.
2026-10-03 04:18:27,765 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-03 04:18:28,934 [urllib3.conn] DEBUG https://api.github.com:443 "PATCH /repos/IDR/idr.openmicroscopy.org/issues/comments/5949038978 HTTP/1.1" 200 None
2026-10-03 04:18:28,935 [     scc.git] DEBUG Calling 'git submodule update'
2026-10-03 04:18:29,117 [     scc.git] DEBUG Get sha1 of %s
2026-10-03 04:18:29,117 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-03 04:18:29,133 [     scc.git] DEBUG Calling 'git status --porcelain'
2026-10-03 04:18:29,239 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7f06db767210> has no local changes
2026-10-03 04:18:29,239 [     scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone

Repository: idr/idr.openmicroscopy.org
Already up to date.

Merged PRs:
  - PR 225 will-moore 'Fix idr0106 to download from ftp instead of github'

Generated by IDRSITE-push#4 (https://merge-ci.openmicroscopy.org/jenkins/job/IDRSITE-push/4/)'
2026-10-03 04:18:29,492 [     scc.git] DEBUG [detached HEAD 649880f] merge master -Dorg -Snone
2026-10-03 04:18:29,493 [   scc.merge] INFO  Repository: idr/idr.openmicroscopy.org
2026-10-03 04:18:29,493 [   scc.merge] INFO  Already up to date.
2026-10-03 04:18:29,493 [   scc.merge] INFO  
2026-10-03 04:18:29,493 [   scc.merge] INFO  Merged PRs:
2026-10-03 04:18:29,493 [   scc.merge] INFO    - PR 225 will-moore 'Fix idr0106 to download from ftp instead of github'
2026-10-03 04:18:29,493 [   scc.merge] INFO  
2026-10-03 04:18:29,493 [   scc.merge] DEBUG Cleaning remote branches created for merging
2026-10-03 04:18:29,493 [     scc.git] DEBUG Calling 'git remote'
Merge all submodules2026-10-03 04:18:31,453 [  scc.config] DEBUG Found github.token
2026-10-03 04:18:31,455 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2026-10-03 04:18:31,751 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-03 04:18:32,190 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-03 04:18:32,617 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2026-10-03 04:18:32,618 [      scc.gh] DEBUG 5000 remaining from 5000 (Reset at 05:10
2026-10-03 04:18:32,619 [     scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-03 04:18:32,629 [     scc.git] DEBUG Check current status
2026-10-03 04:18:32,629 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-03 04:18:32,693 [     scc.git] DEBUG 649880f merge master -Dorg -Snone
2026-10-03 04:18:32,694 [     scc.git] DEBUG Calling 'git submodule status'
2026-10-03 04:18:32,837 [  scc.config] DEBUG Found remote.origin.url
2026-10-03 04:18:33,138 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/idr/idr.openmicroscopy.org HTTP/1.1" 200 None
2026-10-03 04:18:33,631 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/IDR HTTP/1.1" 200 None
2026-10-03 04:18:34,069 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/IDR/members HTTP/1.1" 200 None
2026-10-03 04:18:34,070 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-03 04:18:34,223 [     scc.git] DEBUG Resetting...
2026-10-03 04:18:34,224 [     scc.git] DEBUG Calling 'git reset --hard HEAD'
2026-10-03 04:18:34,475 [     scc.git] DEBUG HEAD is now at 649880f merge master -Dorg -Snone
2026-10-03 04:18:34,480 [     scc.git] DEBUG Calling 'git submodule update --recursive'
2026-10-03 04:18:34,693 [     scc.git] DEBUG Check current status
2026-10-03 04:18:34,693 [     scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-03 04:18:34,754 [     scc.git] DEBUG 649880f merge master -Dorg -Snone
2026-10-03 04:18:34,755 [     scc.git] DEBUG Calling 'git submodule status'
2026-10-03 04:18:34,928 [   scc.merge] INFO  Merging Pull Request(s) based on master
2026-10-03 04:18:34,928 [   scc.merge] INFO  Including Pull Request(s) opened by any public member of the organization
2026-10-03 04:18:34,928 [   scc.merge] INFO  Including Pull Request(s) labelled as include or dependencies
2026-10-03 04:18:34,928 [   scc.merge] INFO  Excluding Pull Request(s) staged as draft
2026-10-03 04:18:34,928 [   scc.merge] INFO  Excluding Pull Request(s) labelled as exclude or breaking
2026-10-03 04:18:34,928 [   scc.merge] INFO  Excluding Pull Request(s) without successful status
2026-10-03 04:18:34,928 [    scc.repo] DEBUG ## PRs found:
2026-10-03 04:18:35,211 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/pulls HTTP/1.1" 200 None
2026-10-03 04:18:35,691 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/issues/225 HTTP/1.1" 200 None
2026-10-03 04:18:36,192 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/issues/225/comments HTTP/1.1" 200 None
2026-10-03 04:18:36,780 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/commits/6f494af3a2b57249d4f647d6abea2d46e25beae5?page=1 HTTP/1.1" 200 None
2026-10-03 04:18:37,311 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/commits/6f494af3a2b57249d4f647d6abea2d46e25beae5/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-03 04:18:37,857 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/commits/6f494af3a2b57249d4f647d6abea2d46e25beae5/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-10-03 04:18:38,345 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/commits/6f494af3a2b57249d4f647d6abea2d46e25beae5?page=1 HTTP/1.1" 200 None
2026-10-03 04:18:38,792 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/statuses/6f494af3a2b57249d4f647d6abea2d46e25beae5?per_page=1 HTTP/1.1" 200 2
2026-10-03 04:18:38,793 [    scc.repo] DEBUG   - PR 225 will-moore 'Fix idr0106 to download from ftp instead of github'
2026-10-03 04:18:38,793 [    scc.repo] DEBUG ## Branches found:
2026-10-03 04:18:38,793 [     scc.git] DEBUG Get sha1 of %s
2026-10-03 04:18:38,793 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-03 04:18:38,808 [     scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-10-03 04:18:38,830 [     scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-03 04:18:38,830 [     scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-10-03 04:18:38,864 [     scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-10-03 04:18:38,949 [     scc.git] DEBUG Already up to date.

2026-10-03 04:18:38,950 [     scc.git] DEBUG Calling 'git fetch origin pull/225/head'
2026-10-03 04:18:39,843 [     scc.git] DEBUG From https://github.com/idr/idr.openmicroscopy.org
2026-10-03 04:18:39,843 [     scc.git] DEBUG  * branch            refs/pull/225/head -> FETCH_HEAD
2026-10-03 04:18:39,882 [     scc.git] DEBUG ## Unique users: []
2026-10-03 04:18:39,882 [     scc.git] DEBUG Get sha1 of %s
2026-10-03 04:18:39,882 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-03 04:18:39,900 [     scc.git] DEBUG Calling 'git diff --name-only HEAD...6f494af3a2b57249d4f647d6abea2d46e25beae5'
2026-10-03 04:18:39,943 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-03 04:18:39,958 [     scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 225 (Fix idr0106 to download from ftp instead of github) 6f494af3a2b57249d4f647d6abea2d46e25beae5'
2026-10-03 04:18:40,035 [     scc.git] DEBUG Already up to date.
2026-10-03 04:18:40,215 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-03 04:18:40,215 [     scc.git] DEBUG Calling 'git submodule update'
2026-10-03 04:18:40,654 [     scc.git] DEBUG Get sha1 of %s
2026-10-03 04:18:40,654 [     scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-03 04:18:40,726 [     scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-03 04:18:41,087 [     scc.git] DEBUG Calling 'git status --porcelain'
2026-10-03 04:18:41,163 [     scc.git] DEBUG <scc.git.GitRepository object at 0x7f6474df91d0> has no local changes
2026-10-03 04:18:41,163 [     scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only

Repository: idr/idr.openmicroscopy.org
Already up to date.

Merged PRs:
  - PR 225 will-moore 'Fix idr0106 to download from ftp instead of github'

Generated by IDRSITE-push#4 (https://merge-ci.openmicroscopy.org/jenkins/job/IDRSITE-push/4/)'
2026-10-03 04:18:41,356 [     scc.git] DEBUG [detached HEAD 030d91a] merge master -Dorg -Ssuccess-only
2026-10-03 04:18:41,358 [   scc.merge] INFO  Repository: idr/idr.openmicroscopy.org
2026-10-03 04:18:41,358 [   scc.merge] INFO  Already up to date.
2026-10-03 04:18:41,358 [   scc.merge] INFO  
2026-10-03 04:18:41,358 [   scc.merge] INFO  Merged PRs:
2026-10-03 04:18:41,358 [   scc.merge] INFO    - PR 225 will-moore 'Fix idr0106 to download from ftp instead of github'
2026-10-03 04:18:41,358 [   scc.merge] INFO  
2026-10-03 04:18:41,358 [   scc.merge] DEBUG Cleaning remote branches created for merging
2026-10-03 04:18:41,358 [     scc.git] DEBUG Calling 'git remote'
Update component versions
grep: build.gradle: No such file or directory
grep: settings.gradle: No such file or directory
grep: build.gradle: No such file or directory
grep: build.gradle: No such file or directory
Up-to-date: 
Commit all component version changes
HEAD detached from 94915ef
nothing to commit, working tree clean
2026-10-03 04:18:49,665 [    scc.push] INFO  Merged branch pushed to https://github.com/snoopycrimecop/idr.openmicroscopy.org/tree/merge_ci