Console Output
+ export BASE_REPO=idr.openmicroscopy.org
+ BASE_REPO=idr.openmicroscopy.org
+ export BASE_BRANCH=master
+ BASE_BRANCH=master
+ export VERSION_LOG=/home/omero/workspace/IDRSITE-push/build/version.tsv
+ VERSION_LOG=/home/omero/workspace/IDRSITE-push/build/version.tsv
+ . build/venv/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ unset VIRTUAL_ENV_PROMPT
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/omero/workspace/IDRSITE-push/build/venv
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/home/omero/workspace/IDRSITE-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ PS1='(venv) '
++ export PS1
++ VIRTUAL_ENV_PROMPT='(venv) '
++ export VIRTUAL_ENV_PROMPT
++ hash -r
+ '[' merge_ci '!=' null ']'
+ export PUSH_BRANCH=merge_ci
+ PUSH_BRANCH=merge_ci
+ '[' null '!=' null ']'
+ export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment'
+ STATUS=success-only
+ MERGE_OPTIONS='-vvv --no-ask --reset --comment'
+ bash build/build-infra-master/recursive-merge
Merge base repository (no submodule updates)
2026-10-07 04:14:54,027 [ scc.config] DEBUG Found github.token
2026-10-07 04:14:54,028 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2026-10-07 04:14:54,285 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-07 04:14:54,735 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-07 04:14:55,203 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2026-10-07 04:14:55,203 [ scc.gh] DEBUG 5000 remaining from 5000 (Reset at 05:10
2026-10-07 04:14:55,204 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-07 04:14:55,214 [ scc.git] DEBUG Check current status
2026-10-07 04:14:55,215 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-07 04:14:55,246 [ scc.git] DEBUG 94915ef Merge pull request #229 from pwalczysko/remove-mybinder
2026-10-07 04:14:55,247 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-07 04:14:55,423 [ scc.config] DEBUG Found remote.origin.url
2026-10-07 04:14:55,798 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/idr/idr.openmicroscopy.org HTTP/1.1" 200 None
2026-10-07 04:14:56,376 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/IDR HTTP/1.1" 200 None
2026-10-07 04:14:56,837 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/IDR/members HTTP/1.1" 200 None
2026-10-07 04:14:56,838 [ scc.git] DEBUG Resetting...
2026-10-07 04:14:56,838 [ scc.git] DEBUG Calling 'git reset --hard HEAD'
2026-10-07 04:14:57,189 [ scc.git] DEBUG HEAD is now at 94915ef Merge pull request #229 from pwalczysko/remove-mybinder
2026-10-07 04:14:57,191 [ scc.git] DEBUG Calling 'git submodule update --recursive'
2026-10-07 04:14:57,403 [ scc.git] DEBUG Check current status
2026-10-07 04:14:57,404 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-07 04:14:57,435 [ scc.git] DEBUG 94915ef Merge pull request #229 from pwalczysko/remove-mybinder
2026-10-07 04:14:57,440 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-07 04:14:57,620 [ scc.merge] INFO Merging Pull Request(s) based on master
2026-10-07 04:14:57,620 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
2026-10-07 04:14:57,620 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
2026-10-07 04:14:57,621 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
2026-10-07 04:14:57,621 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
2026-10-07 04:14:57,621 [ scc.repo] DEBUG ## PRs found:
2026-10-07 04:14:57,961 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/pulls HTTP/1.1" 200 None
2026-10-07 04:14:58,462 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/issues/225 HTTP/1.1" 200 None
2026-10-07 04:14:58,982 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/issues/225/comments HTTP/1.1" 200 None
2026-10-07 04:14:58,984 [ scc.repo] DEBUG - PR 225 will-moore 'Fix idr0106 to download from ftp instead of github'
2026-10-07 04:14:58,984 [ scc.repo] DEBUG ## Branches found:
2026-10-07 04:14:58,984 [ scc.git] DEBUG Get sha1 of %s
2026-10-07 04:14:58,984 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-07 04:14:59,002 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-10-07 04:14:59,025 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-07 04:14:59,026 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-10-07 04:14:59,058 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-10-07 04:14:59,118 [ scc.git] DEBUG Already up to date.
2026-10-07 04:14:59,118 [ scc.git] DEBUG Calling 'git fetch origin pull/225/head'
2026-10-07 04:15:00,431 [ scc.git] DEBUG From https://github.com/idr/idr.openmicroscopy.org
2026-10-07 04:15:00,431 [ scc.git] DEBUG * branch refs/pull/225/head -> FETCH_HEAD
2026-10-07 04:15:00,480 [ scc.git] DEBUG ## Unique users: []
2026-10-07 04:15:00,480 [ scc.git] DEBUG Get sha1 of %s
2026-10-07 04:15:00,480 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-07 04:15:00,507 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6f494af3a2b57249d4f647d6abea2d46e25beae5'
2026-10-07 04:15:00,587 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-07 04:15:00,604 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 225 (Fix idr0106 to download from ftp instead of github) 6f494af3a2b57249d4f647d6abea2d46e25beae5'
2026-10-07 04:15:00,972 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-10-07 04:15:01,067 [ scc.git] DEBUG _data/download_urls.tsv | 6 +++---
2026-10-07 04:15:01,067 [ scc.git] DEBUG 1 file changed, 3 insertions(+), 3 deletions(-)
2026-10-07 04:15:01,282 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-07 04:15:01,283 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-07 04:15:01,478 [ scc.git] DEBUG Get sha1 of %s
2026-10-07 04:15:01,478 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-07 04:15:01,495 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-07 04:15:01,606 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff47c369210> has no local changes
2026-10-07 04:15:01,606 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone
Repository: idr/idr.openmicroscopy.org
Already up to date.
Merged PRs:
- PR 225 will-moore 'Fix idr0106 to download from ftp instead of github'
Generated by IDRSITE-push#9 (https://merge-ci.openmicroscopy.org/jenkins/job/IDRSITE-push/9/)'
2026-10-07 04:15:01,852 [ scc.git] DEBUG [detached HEAD 81e262a] merge master -Dorg -Snone
2026-10-07 04:15:01,857 [ scc.merge] INFO Repository: idr/idr.openmicroscopy.org
2026-10-07 04:15:01,857 [ scc.merge] INFO Already up to date.
2026-10-07 04:15:01,857 [ scc.merge] INFO
2026-10-07 04:15:01,857 [ scc.merge] INFO Merged PRs:
2026-10-07 04:15:01,857 [ scc.merge] INFO - PR 225 will-moore 'Fix idr0106 to download from ftp instead of github'
2026-10-07 04:15:01,857 [ scc.merge] INFO
2026-10-07 04:15:01,857 [ scc.merge] DEBUG Cleaning remote branches created for merging
2026-10-07 04:15:01,857 [ scc.git] DEBUG Calling 'git remote'
Merge all submodules2026-10-07 04:15:04,415 [ scc.config] DEBUG Found github.token
2026-10-07 04:15:04,417 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2026-10-07 04:15:04,679 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-07 04:15:05,145 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-07 04:15:05,598 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2026-10-07 04:15:05,599 [ scc.gh] DEBUG 5000 remaining from 5000 (Reset at 05:10
2026-10-07 04:15:05,600 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-10-07 04:15:05,615 [ scc.git] DEBUG Check current status
2026-10-07 04:15:05,615 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-07 04:15:05,642 [ scc.git] DEBUG 81e262a merge master -Dorg -Snone
2026-10-07 04:15:05,643 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-07 04:15:05,798 [ scc.config] DEBUG Found remote.origin.url
2026-10-07 04:15:06,149 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/idr/idr.openmicroscopy.org HTTP/1.1" 200 None
2026-10-07 04:15:06,652 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/IDR HTTP/1.1" 200 None
2026-10-07 04:15:07,119 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/IDR/members HTTP/1.1" 200 None
2026-10-07 04:15:07,120 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-07 04:15:07,256 [ scc.git] DEBUG Resetting...
2026-10-07 04:15:07,256 [ scc.git] DEBUG Calling 'git reset --hard HEAD'
2026-10-07 04:15:07,380 [ scc.git] DEBUG HEAD is now at 81e262a merge master -Dorg -Snone
2026-10-07 04:15:07,382 [ scc.git] DEBUG Calling 'git submodule update --recursive'
2026-10-07 04:15:07,525 [ scc.git] DEBUG Check current status
2026-10-07 04:15:07,525 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-10-07 04:15:07,545 [ scc.git] DEBUG 81e262a merge master -Dorg -Snone
2026-10-07 04:15:07,546 [ scc.git] DEBUG Calling 'git submodule status'
2026-10-07 04:15:07,678 [ scc.merge] INFO Merging Pull Request(s) based on master
2026-10-07 04:15:07,679 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
2026-10-07 04:15:07,679 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
2026-10-07 04:15:07,679 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
2026-10-07 04:15:07,679 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
2026-10-07 04:15:07,679 [ scc.merge] INFO Excluding Pull Request(s) without successful status
2026-10-07 04:15:07,679 [ scc.repo] DEBUG ## PRs found:
2026-10-07 04:15:08,007 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/pulls HTTP/1.1" 200 None
2026-10-07 04:15:08,545 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/issues/225 HTTP/1.1" 200 None
2026-10-07 04:15:09,075 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/issues/225/comments HTTP/1.1" 200 None
2026-10-07 04:15:09,747 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/commits/6f494af3a2b57249d4f647d6abea2d46e25beae5?page=1 HTTP/1.1" 200 None
2026-10-07 04:15:10,341 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/commits/6f494af3a2b57249d4f647d6abea2d46e25beae5/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-10-07 04:15:10,886 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/commits/6f494af3a2b57249d4f647d6abea2d46e25beae5/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-10-07 04:15:11,399 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/commits/6f494af3a2b57249d4f647d6abea2d46e25beae5?page=1 HTTP/1.1" 200 None
2026-10-07 04:15:11,877 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/statuses/6f494af3a2b57249d4f647d6abea2d46e25beae5?per_page=1 HTTP/1.1" 200 2
2026-10-07 04:15:11,878 [ scc.repo] DEBUG - PR 225 will-moore 'Fix idr0106 to download from ftp instead of github'
2026-10-07 04:15:11,878 [ scc.repo] DEBUG ## Branches found:
2026-10-07 04:15:11,878 [ scc.git] DEBUG Get sha1 of %s
2026-10-07 04:15:11,878 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-07 04:15:11,890 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-10-07 04:15:11,910 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-10-07 04:15:11,910 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-10-07 04:15:11,931 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-10-07 04:15:12,014 [ scc.git] DEBUG Already up to date.
2026-10-07 04:15:12,014 [ scc.git] DEBUG Calling 'git fetch origin pull/225/head'
2026-10-07 04:15:13,077 [ scc.git] DEBUG From https://github.com/idr/idr.openmicroscopy.org
2026-10-07 04:15:13,078 [ scc.git] DEBUG * branch refs/pull/225/head -> FETCH_HEAD
2026-10-07 04:15:13,131 [ scc.git] DEBUG ## Unique users: []
2026-10-07 04:15:13,131 [ scc.git] DEBUG Get sha1 of %s
2026-10-07 04:15:13,131 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-07 04:15:13,155 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6f494af3a2b57249d4f647d6abea2d46e25beae5'
2026-10-07 04:15:13,211 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-07 04:15:13,228 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 225 (Fix idr0106 to download from ftp instead of github) 6f494af3a2b57249d4f647d6abea2d46e25beae5'
2026-10-07 04:15:13,308 [ scc.git] DEBUG Already up to date.
2026-10-07 04:15:13,500 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-10-07 04:15:13,501 [ scc.git] DEBUG Calling 'git submodule update'
2026-10-07 04:15:13,701 [ scc.git] DEBUG Get sha1 of %s
2026-10-07 04:15:13,701 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-10-07 04:15:13,725 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-10-07 04:15:13,920 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-10-07 04:15:14,009 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa5812b7d50> has no local changes
2026-10-07 04:15:14,009 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: idr/idr.openmicroscopy.org
Already up to date.
Merged PRs:
- PR 225 will-moore 'Fix idr0106 to download from ftp instead of github'
Generated by IDRSITE-push#9 (https://merge-ci.openmicroscopy.org/jenkins/job/IDRSITE-push/9/)'
2026-10-07 04:15:14,218 [ scc.git] DEBUG [detached HEAD d32cce5] merge master -Dorg -Ssuccess-only
2026-10-07 04:15:14,220 [ scc.merge] INFO Repository: idr/idr.openmicroscopy.org
2026-10-07 04:15:14,221 [ scc.merge] INFO Already up to date.
2026-10-07 04:15:14,221 [ scc.merge] INFO
2026-10-07 04:15:14,221 [ scc.merge] INFO Merged PRs:
2026-10-07 04:15:14,221 [ scc.merge] INFO - PR 225 will-moore 'Fix idr0106 to download from ftp instead of github'
2026-10-07 04:15:14,221 [ scc.merge] INFO
2026-10-07 04:15:14,221 [ scc.merge] DEBUG Cleaning remote branches created for merging
2026-10-07 04:15:14,221 [ scc.git] DEBUG Calling 'git remote'
Update component versions
grep: build.gradle: No such file or directory
grep: settings.gradle: No such file or directory
grep: build.gradle: No such file or directory
grep: build.gradle: No such file or directory
Up-to-date:
Commit all component version changes
HEAD detached from 94915ef
nothing to commit, working tree clean
2026-10-07 04:15:24,076 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/idr.openmicroscopy.org/tree/merge_ci
