00:58:03 Started by upstream project "Trigger" build number 145
00:58:03 originally caused by:
00:58:03 Started by timer
00:58:03 Running as SYSTEM
00:58:03 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-docs
00:58:03 The recommended git tool is: NONE
00:58:03 No credentials specified
00:58:03 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-docs/.git # timeout=10
00:58:03 Fetching changes from the remote Git repository
00:58:03 > git config remote.origin.url https://github.com/ome/ome-documentation # timeout=10
00:58:03 Fetching upstream changes from https://github.com/ome/ome-documentation
00:58:03 > git --version # timeout=10
00:58:03 > git --version # 'git version 2.39.3'
00:58:03 > git fetch --tags --force --progress -- https://github.com/ome/ome-documentation +refs/heads/*:refs/remotes/origin/* # timeout=10
00:58:04 > git rev-parse origin/develop^{commit} # timeout=10
00:58:04 Checking out Revision 9443a5c73128f1d6a79080f347bad2cf4f25426f (origin/develop)
00:58:04 > git config core.sparsecheckout # timeout=10
00:58:04 > git checkout -f 9443a5c73128f1d6a79080f347bad2cf4f25426f # timeout=10
00:58:06 Commit message: "Merge pull request #2430 from jburel/exclude_trac"
00:58:06 > git rev-list --no-walk 9443a5c73128f1d6a79080f347bad2cf4f25426f # timeout=10
00:58:06 Cleaning workspace
00:58:06 > git rev-parse --verify HEAD # timeout=10
00:58:06 Resetting working tree
00:58:06 > git reset --hard # timeout=10
00:58:06 > git clean -fdx # timeout=10
00:58:06 [OMERO-docs] $ /bin/bash -xe /tmp/jenkins11263951232365185169.sh
00:58:06 + python3 -mvenv venv
00:58:10 + source /home/omero/workspace/OMERO-docs/venv/bin/activate
00:58:10 ++ deactivate nondestructive
00:58:10 ++ '[' -n '' ']'
00:58:10 ++ '[' -n '' ']'
00:58:10 ++ '[' -n /bin/bash -o -n '' ']'
00:58:10 ++ hash -r
00:58:10 ++ '[' -n '' ']'
00:58:10 ++ unset VIRTUAL_ENV
00:58:10 ++ '[' '!' nondestructive = nondestructive ']'
00:58:10 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-docs/venv
00:58:10 ++ export VIRTUAL_ENV
00:58:10 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:58:10 ++ PATH=/home/omero/workspace/OMERO-docs/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:58:10 ++ export PATH
00:58:10 ++ '[' -n '' ']'
00:58:10 ++ '[' -z '' ']'
00:58:10 ++ _OLD_VIRTUAL_PS1=
00:58:10 ++ PS1='(venv) '
00:58:10 ++ export PS1
00:58:10 ++ '[' -n /bin/bash -o -n '' ']'
00:58:10 ++ hash -r
00:58:10 + pip install -U pip
00:58:11 Requirement already satisfied: pip in ./venv/lib/python3.9/site-packages (21.2.3)
00:58:11 Collecting pip
00:58:11 Using cached pip-24.1.2-py3-none-any.whl (1.8 MB)
00:58:11 Installing collected packages: pip
00:58:11 Attempting uninstall: pip
00:58:11 Found existing installation: pip 21.2.3
00:58:11 Uninstalling pip-21.2.3:
00:58:11 Successfully uninstalled pip-21.2.3
00:58:12 Successfully installed pip-24.1.2
00:58:13 + pip install -U scc
00:58:13 Collecting scc
00:58:13 Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB)
00:58:13 Collecting PyGithub>=1.54 (from scc)
00:58:13 Using cached PyGithub-2.3.0-py3-none-any.whl.metadata (3.8 kB)
00:58:13 Collecting PyYAML>=5.1 (from scc)
00:58:13 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
00:58:13 Collecting future (from scc)
00:58:13 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
00:58:14 Collecting ruamel.yaml (from scc)
00:58:14 Using cached ruamel.yaml-0.18.6-py3-none-any.whl.metadata (23 kB)
00:58:14 Collecting ruamel.yaml.jinja2 (from scc)
00:58:14 Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB)
00:58:14 Collecting six (from scc)
00:58:14 Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB)
00:58:14 Collecting urllib3<2 (from scc)
00:58:14 Using cached urllib3-1.26.19-py2.py3-none-any.whl.metadata (49 kB)
00:58:14 Collecting yaclifw<0.3,>=0.2.0 (from scc)
00:58:14 Using cached yaclifw-0.2.0-py3-none-any.whl
00:58:14 Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc)
00:58:14 Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl.metadata (8.6 kB)
00:58:14 Collecting requests>=2.14.0 (from PyGithub>=1.54->scc)
00:58:14 Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB)
00:58:15 Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
00:58:15 Using cached PyJWT-2.8.0-py3-none-any.whl.metadata (4.2 kB)
00:58:15 Collecting typing-extensions>=4.0.0 (from PyGithub>=1.54->scc)
00:58:15 Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB)
00:58:15 Collecting Deprecated (from PyGithub>=1.54->scc)
00:58:15 Using cached Deprecated-1.2.14-py2.py3-none-any.whl.metadata (5.4 kB)
00:58:15 Collecting ruamel.yaml.clib>=0.2.7 (from ruamel.yaml->scc)
00:58:15 Using cached ruamel.yaml.clib-0.2.8-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl.metadata (2.2 kB)
00:58:15 Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
00:58:15 Using cached cryptography-43.0.0-cp39-abi3-manylinux_2_28_x86_64.whl.metadata (5.4 kB)
00:58:15 Collecting cffi>=1.4.1 (from pynacl>=1.4.0->PyGithub>=1.54->scc)
00:58:15 Using cached cffi-1.16.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (1.5 kB)
00:58:15 Collecting charset-normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc)
00:58:15 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB)
00:58:16 Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc)
00:58:16 Using cached idna-3.7-py3-none-any.whl.metadata (9.9 kB)
00:58:16 Collecting certifi>=2017.4.17 (from requests>=2.14.0->PyGithub>=1.54->scc)
00:58:16 Using cached certifi-2024.7.4-py3-none-any.whl.metadata (2.2 kB)
00:58:16 Collecting wrapt<2,>=1.10 (from Deprecated->PyGithub>=1.54->scc)
00:58:16 Using cached wrapt-1.16.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB)
00:58:16 Collecting pycparser (from cffi>=1.4.1->pynacl>=1.4.0->PyGithub>=1.54->scc)
00:58:16 Using cached pycparser-2.22-py3-none-any.whl.metadata (943 bytes)
00:58:16 Using cached scc-0.20.0-py3-none-any.whl (48 kB)
00:58:16 Using cached PyGithub-2.3.0-py3-none-any.whl (354 kB)
00:58:16 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB)
00:58:16 Using cached urllib3-1.26.19-py2.py3-none-any.whl (143 kB)
00:58:16 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:58:16 Using cached ruamel.yaml-0.18.6-py3-none-any.whl (117 kB)
00:58:16 Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB)
00:58:16 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
00:58:16 Using cached PyJWT-2.8.0-py3-none-any.whl (22 kB)
00:58:16 Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (856 kB)
00:58:16 Using cached requests-2.32.3-py3-none-any.whl (64 kB)
00:58:16 Using cached ruamel.yaml.clib-0.2.8-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl (562 kB)
00:58:16 Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB)
00:58:16 Using cached Deprecated-1.2.14-py2.py3-none-any.whl (9.6 kB)
00:58:16 Using cached certifi-2024.7.4-py3-none-any.whl (162 kB)
00:58:16 Using cached cffi-1.16.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (443 kB)
00:58:16 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB)
00:58:16 Using cached cryptography-43.0.0-cp39-abi3-manylinux_2_28_x86_64.whl (4.0 MB)
00:58:16 Using cached idna-3.7-py3-none-any.whl (66 kB)
00:58:16 Using cached wrapt-1.16.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (80 kB)
00:58:16 Using cached pycparser-2.22-py3-none-any.whl (117 kB)
00:58:16 Installing collected packages: wrapt, urllib3, typing-extensions, six, ruamel.yaml.clib, PyYAML, pyjwt, pycparser, idna, future, charset-normalizer, certifi, yaclifw, ruamel.yaml, requests, Deprecated, cffi, ruamel.yaml.jinja2, pynacl, cryptography, PyGithub, scc
00:58:18 Successfully installed Deprecated-1.2.14 PyGithub-2.3.0 PyYAML-6.0.1 certifi-2024.7.4 cffi-1.16.0 charset-normalizer-3.3.2 cryptography-43.0.0 future-1.0.0 idna-3.7 pycparser-2.22 pyjwt-2.8.0 pynacl-1.5.0 requests-2.32.3 ruamel.yaml-0.18.6 ruamel.yaml.clib-0.2.8 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.16.0 typing-extensions-4.12.2 urllib3-1.26.19 wrapt-1.16.0 yaclifw-0.2.0
00:58:18 + test -e src
00:58:18 + scc merge develop --no-ask --reset --comment -S success-only --push merge_ci
00:58:20 Following Github server redirection from /repos/ome/ome-documentation to /repositories/3198415
00:58:20 2024-07-22 00:58:20,619 [github.Reque] INFO Following Github server redirection from /repos/ome/ome-documentation to /repositories/3198415
00:58:22 2024-07-22 00:58:22,825 [ scc.merge] INFO Merging Pull Request(s) based on develop
00:58:22 2024-07-22 00:58:22,826 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
00:58:22 2024-07-22 00:58:22,826 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
00:58:22 2024-07-22 00:58:22,826 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
00:58:22 2024-07-22 00:58:22,826 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
00:58:22 2024-07-22 00:58:22,826 [ scc.merge] INFO Excluding Pull Request(s) without successful status
00:58:45 2024-07-22 00:58:45,284 [ scc.git] INFO - PR 2353 jburel 'Mencoder'
00:58:45 Conflicting PR. Removed from build [OMERO-docs#125](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-docs/125/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-docs/125/consoleText) for more details.
00:58:45 Possible conflicts:
00:58:45 - Upstream changes
00:58:45 - omero/sysadmins/omeromovie.rst
00:58:45
00:58:45 --conflicts
00:58:45
00:58:47 2024-07-22 00:58:47,424 [ scc.merge] INFO Repository: ome/ome-documentation
00:58:47 2024-07-22 00:58:47,424 [ scc.merge] INFO Excluded PRs:
00:58:47 2024-07-22 00:58:47,424 [ scc.merge] INFO - PR 2393 bernt-matthias 'fix option capitalization' (user: bernt-matthias)
00:58:47 2024-07-22 00:58:47,424 [ scc.merge] INFO - PR 2357 fmeyenhofer 'Add a OMERO.table visualisation example' (user: fmeyenhofer)
00:58:47 2024-07-22 00:58:47,425 [ scc.merge] INFO - PR 2347 jburel 'pin version to match rtd ones' (exclude comment)
00:58:47 2024-07-22 00:58:47,425 [ scc.merge] INFO - PR 2298 pwalczysko 'test' (exclude comment)
00:58:47 2024-07-22 00:58:47,425 [ scc.merge] INFO Already up to date.
00:58:47 2024-07-22 00:58:47,425 [ scc.merge] INFO
00:58:47 2024-07-22 00:58:47,425 [ scc.merge] INFO Merged PRs:
00:58:47 2024-07-22 00:58:47,425 [ scc.merge] INFO - PR 2291 pwalczysko 'Add ansible and docker install doc - former "install.rst"'
00:58:47 2024-07-22 00:58:47,425 [ scc.merge] INFO - PR 2355 will-moore 'Update python Tables code to use 'Image' column'
00:58:47 2024-07-22 00:58:47,425 [ scc.merge] INFO - PR 2446 jburel 'exclude java link from linkcheck'
00:58:47 2024-07-22 00:58:47,425 [ scc.merge] INFO - PR 2448 jburel 'point to the page maintained by GlencoeSoftware'
00:58:47 2024-07-22 00:58:47,425 [ scc.merge] INFO
00:58:47 2024-07-22 00:58:47,425 [ scc.merge] INFO Conflicting PRs (not included):
00:58:47 2024-07-22 00:58:47,425 [ scc.merge] INFO - PR 2353 jburel 'Mencoder'
00:58:47 2024-07-22 00:58:47,425 [ scc.merge] INFO
00:58:50 2024-07-22 00:58:50,376 [ scc.merge] INFO Merged branch pushed to https://github.com/snoopycrimecop/ome-documentation/tree/merge_ci
00:58:50 [OMERO-docs] $ /bin/bash -xe /tmp/jenkins11778066665812993350.sh
00:58:50 + source /home/omero/workspace/OMERO-docs/venv/bin/activate
00:58:50 ++ deactivate nondestructive
00:58:50 ++ '[' -n '' ']'
00:58:50 ++ '[' -n '' ']'
00:58:50 ++ '[' -n /bin/bash -o -n '' ']'
00:58:50 ++ hash -r
00:58:50 ++ '[' -n '' ']'
00:58:50 ++ unset VIRTUAL_ENV
00:58:50 ++ '[' '!' nondestructive = nondestructive ']'
00:58:50 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-docs/venv
00:58:50 ++ export VIRTUAL_ENV
00:58:50 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:58:50 ++ PATH=/home/omero/workspace/OMERO-docs/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:58:50 ++ export PATH
00:58:50 ++ '[' -n '' ']'
00:58:50 ++ '[' -z '' ']'
00:58:50 ++ _OLD_VIRTUAL_PS1=
00:58:50 ++ PS1='(venv) '
00:58:50 ++ export PS1
00:58:50 ++ '[' -n /bin/bash -o -n '' ']'
00:58:50 ++ hash -r
00:58:50 + pip install -r requirements.txt
00:58:51 Collecting sphinx==5.3.0 (from -r requirements.txt (line 1))
00:58:51 Using cached sphinx-5.3.0-py3-none-any.whl.metadata (6.4 kB)
00:58:51 Collecting sphinx_rtd_theme==1.1.1 (from -r requirements.txt (line 2))
00:58:51 Using cached sphinx_rtd_theme-1.1.1-py2.py3-none-any.whl.metadata (4.4 kB)
00:58:51 Collecting sphinxcontrib-applehelp (from sphinx==5.3.0->-r requirements.txt (line 1))
00:58:51 Using cached sphinxcontrib_applehelp-1.0.8-py3-none-any.whl.metadata (2.3 kB)
00:58:51 Collecting sphinxcontrib-devhelp (from sphinx==5.3.0->-r requirements.txt (line 1))
00:58:51 Using cached sphinxcontrib_devhelp-1.0.6-py3-none-any.whl.metadata (2.3 kB)
00:58:51 Collecting sphinxcontrib-jsmath (from sphinx==5.3.0->-r requirements.txt (line 1))
00:58:51 Using cached sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl.metadata (1.4 kB)
00:58:51 Collecting sphinxcontrib-htmlhelp>=2.0.0 (from sphinx==5.3.0->-r requirements.txt (line 1))
00:58:51 Using cached sphinxcontrib_htmlhelp-2.0.6-py3-none-any.whl.metadata (2.3 kB)
00:58:51 Collecting sphinxcontrib-serializinghtml>=1.1.5 (from sphinx==5.3.0->-r requirements.txt (line 1))
00:58:51 Using cached sphinxcontrib_serializinghtml-1.1.10-py3-none-any.whl.metadata (2.4 kB)
00:58:51 Collecting sphinxcontrib-qthelp (from sphinx==5.3.0->-r requirements.txt (line 1))
00:58:51 Using cached sphinxcontrib_qthelp-1.0.8-py3-none-any.whl.metadata (2.3 kB)
00:58:51 Collecting Jinja2>=3.0 (from sphinx==5.3.0->-r requirements.txt (line 1))
00:58:51 Using cached jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB)
00:58:51 Collecting Pygments>=2.12 (from sphinx==5.3.0->-r requirements.txt (line 1))
00:58:51 Using cached pygments-2.18.0-py3-none-any.whl.metadata (2.5 kB)
00:58:51 Collecting docutils<0.20,>=0.14 (from sphinx==5.3.0->-r requirements.txt (line 1))
00:58:51 Using cached docutils-0.19-py3-none-any.whl.metadata (2.7 kB)
00:58:51 Collecting snowballstemmer>=2.0 (from sphinx==5.3.0->-r requirements.txt (line 1))
00:58:51 Using cached snowballstemmer-2.2.0-py2.py3-none-any.whl.metadata (6.5 kB)
00:58:51 Collecting babel>=2.9 (from sphinx==5.3.0->-r requirements.txt (line 1))
00:58:51 Using cached Babel-2.15.0-py3-none-any.whl.metadata (1.5 kB)
00:58:52 Collecting alabaster<0.8,>=0.7 (from sphinx==5.3.0->-r requirements.txt (line 1))
00:58:52 Using cached alabaster-0.7.16-py3-none-any.whl.metadata (2.9 kB)
00:58:52 Collecting imagesize>=1.3 (from sphinx==5.3.0->-r requirements.txt (line 1))
00:58:52 Using cached imagesize-1.4.1-py2.py3-none-any.whl.metadata (1.5 kB)
00:58:52 Requirement already satisfied: requests>=2.5.0 in ./venv/lib/python3.9/site-packages (from sphinx==5.3.0->-r requirements.txt (line 1)) (2.32.3)
00:58:52 Collecting packaging>=21.0 (from sphinx==5.3.0->-r requirements.txt (line 1))
00:58:52 Using cached packaging-24.1-py3-none-any.whl.metadata (3.2 kB)
00:58:52 Collecting importlib-metadata>=4.8 (from sphinx==5.3.0->-r requirements.txt (line 1))
00:58:52 Using cached importlib_metadata-8.0.0-py3-none-any.whl.metadata (4.6 kB)
00:58:52 Collecting docutils<0.20,>=0.14 (from sphinx==5.3.0->-r requirements.txt (line 1))
00:58:52 Using cached docutils-0.17.1-py2.py3-none-any.whl.metadata (2.9 kB)
00:58:52 Collecting zipp>=0.5 (from importlib-metadata>=4.8->sphinx==5.3.0->-r requirements.txt (line 1))
00:58:52 Using cached zipp-3.19.2-py3-none-any.whl.metadata (3.6 kB)
00:58:52 Collecting MarkupSafe>=2.0 (from Jinja2>=3.0->sphinx==5.3.0->-r requirements.txt (line 1))
00:58:52 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB)
00:58:52 Requirement already satisfied: charset-normalizer<4,>=2 in ./venv/lib/python3.9/site-packages (from requests>=2.5.0->sphinx==5.3.0->-r requirements.txt (line 1)) (3.3.2)
00:58:52 Requirement already satisfied: idna<4,>=2.5 in ./venv/lib/python3.9/site-packages (from requests>=2.5.0->sphinx==5.3.0->-r requirements.txt (line 1)) (3.7)
00:58:52 Requirement already satisfied: urllib3<3,>=1.21.1 in ./venv/lib/python3.9/site-packages (from requests>=2.5.0->sphinx==5.3.0->-r requirements.txt (line 1)) (1.26.19)
00:58:52 Requirement already satisfied: certifi>=2017.4.17 in ./venv/lib/python3.9/site-packages (from requests>=2.5.0->sphinx==5.3.0->-r requirements.txt (line 1)) (2024.7.4)
00:58:52 Using cached sphinx-5.3.0-py3-none-any.whl (3.2 MB)
00:58:52 Using cached sphinx_rtd_theme-1.1.1-py2.py3-none-any.whl (2.8 MB)
00:58:52 Using cached alabaster-0.7.16-py3-none-any.whl (13 kB)
00:58:52 Using cached Babel-2.15.0-py3-none-any.whl (9.6 MB)
00:58:52 Using cached docutils-0.17.1-py2.py3-none-any.whl (575 kB)
00:58:53 Using cached imagesize-1.4.1-py2.py3-none-any.whl (8.8 kB)
00:58:53 Using cached importlib_metadata-8.0.0-py3-none-any.whl (24 kB)
00:58:53 Using cached jinja2-3.1.4-py3-none-any.whl (133 kB)
00:58:53 Using cached packaging-24.1-py3-none-any.whl (53 kB)
00:58:53 Using cached pygments-2.18.0-py3-none-any.whl (1.2 MB)
00:58:53 Using cached snowballstemmer-2.2.0-py2.py3-none-any.whl (93 kB)
00:58:53 Using cached sphinxcontrib_htmlhelp-2.0.6-py3-none-any.whl (99 kB)
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00:58:53 Using cached zipp-3.19.2-py3-none-any.whl (9.0 kB)
00:58:53 Installing collected packages: snowballstemmer, zipp, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, Pygments, packaging, MarkupSafe, imagesize, docutils, babel, alabaster, Jinja2, importlib-metadata, sphinx, sphinx_rtd_theme
00:58:56 Successfully installed Jinja2-3.1.4 MarkupSafe-2.1.5 Pygments-2.18.0 alabaster-0.7.16 babel-2.15.0 docutils-0.17.1 imagesize-1.4.1 importlib-metadata-8.0.0 packaging-24.1 snowballstemmer-2.2.0 sphinx-5.3.0 sphinx_rtd_theme-1.1.1 sphinxcontrib-applehelp-1.0.8 sphinxcontrib-devhelp-1.0.6 sphinxcontrib-htmlhelp-2.0.6 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-1.0.8 sphinxcontrib-serializinghtml-1.1.10 zipp-3.19.2
00:58:56 + cd omero
00:58:56 + make clean html linkcheck
00:58:56 rm -rf _build/*
00:58:56 sphinx-build -b html -d _build/doctrees . _build/html
00:58:57 Running Sphinx v5.3.0
00:58:57 making output directory... done
00:58:57 building [mo]: targets for 0 po files that are out of date
00:58:57 building [html]: targets for 160 source files that are out of date
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01:00:05 (sysadmins/unix/server-install-homebrew: line 124) ok https://docs.conda.io/en/latest/miniconda.html
01:00:05 (developers/Python: line 7) ok https://docs.conda.io/en/latest/
01:00:05 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 324) ok https://docs.gunicorn.org/en/stable/deploy.html
01:00:06 (sysadmins/config: line 2923) ok https://docs.gunicorn.org/en/latest/settings.html
01:00:06 (sysadmins/config: line 2827) ok https://docs.gunicorn.org/en/latest/settings.html?highlight=limit_request_line
01:00:06 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 334) ok https://docs.gunicorn.org/en/stable/design.html
01:00:06 (sysadmins/unix/install-web/web-deployment: line 11) redirect https://docs.gunicorn.org/ - with Found to https://docs.gunicorn.org/en/stable/
01:00:06 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 157) ok https://docs.gunicorn.org/en/stable/settings.html
01:00:06 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 350) ok https://docs.gunicorn.org/en/stable/settings.html#threads
01:00:06 (sysadmins/config: line 2939) ok https://docs.gunicorn.org/en/stable/settings.html#workers
01:00:06 (sysadmins/config: line 2931) ok https://docs.gunicorn.org/en/stable/settings.html#timeout
01:00:06 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 370) ok https://docs.gunicorn.org/en/stable/settings.html#worker-connections
01:00:06 (developers/Server/SecuritySystem: line 38) ok https://docs.jboss.org/hibernate/core/3.6/reference/en-US/html/filters.html
01:00:07 (developers/Server/Events: line 41) ok https://docs.jboss.org/hibernate/core/3.6/reference/en-US/html/events.html
01:00:07 (developers/GettingStarted: line 232) ok https://docs.jboss.org/hibernate/orm/3.6/reference/en-US/html/queryhql.html
01:00:07 (sysadmins/limitations: line 82) redirect https://docs.openmicroscopy.org/bio-formats/7.3.0/formats/gatan-digital-micrograph.html - with Found to https://bio-formats.readthedocs.io/en/v7.3.0/formats/gatan-digital-micrograph.html
01:00:07 (developers/ImportFS: line 54) redirect https://docs.openmicroscopy.org/bio-formats/7.3.0/ - with Found to https://bio-formats.readthedocs.io/en/v7.3.0/
01:00:07 (sysadmins/limitations: line 83) redirect https://docs.openmicroscopy.org/bio-formats/7.3.0/formats/mrc.html - with Found to https://bio-formats.readthedocs.io/en/v7.3.0/formats/mrc.html
01:00:07 (sysadmins/UpgradeCheck: line 12) redirect https://docs.openmicroscopy.org/bio-formats/7.3.0/users/comlinetools/index.html#version-checker - with Found to https://bio-formats.readthedocs.io/en/v7.3.0/users/comlinetools/index.html#version-checker
01:00:08 (sysadmins/limitations: line 84) redirect https://docs.openmicroscopy.org/bio-formats/7.3.0/formats/tiff.html - with Found to https://bio-formats.readthedocs.io/en/v7.3.0/formats/tiff.html
01:00:08 (users/cli/import: line 4) redirect https://docs.openmicroscopy.org/bio-formats/7.3.0/supported-formats.html - with Found to https://bio-formats.readthedocs.io/en/v7.3.0/supported-formats.html
01:00:08 (developers/GettingStarted: line 60) redirect https://docs.openmicroscopy.org/contributing/ci-omero.html - permanently to https://ome-contributing.readthedocs.io/en/latest/ci-omero.html
01:00:08 (developers/installation: line 30) redirect https://docs.openmicroscopy.org/contributing/using-git.html - permanently to https://ome-contributing.readthedocs.io/en/latest/using-git.html
01:00:08 (sysadmins/limitations: line 61) redirect https://docs.openmicroscopy.org/latest/bio-formats/users/comlinetools/conversion.html - with Found to https://bio-formats.readthedocs.io/en/stable/users/comlinetools/conversion.html
01:00:08 ( index: line 39) redirect https://docs.openmicroscopy.org/latest/ome-model/ - with Found to https://ome-model.readthedocs.io/en/stable/
01:00:08 (developers/GettingStarted/AdvancedClientDevelopment: line 366) redirect https://docs.openmicroscopy.org/latest/ome-model/ome-xml/ - with Found to https://ome-model.readthedocs.io/en/stable/ome-xml/
01:00:08 (developers/Model/Containers: line 8) redirect https://docs.openmicroscopy.org/latest/ome-model/developers/model-overview.html - with Found to https://ome-model.readthedocs.io/en/stable/developers/model-overview.html
01:00:08 (developers/Model/Units: line 11) redirect https://docs.openmicroscopy.org/latest/ome-model/developers/ome-units.html - with Found to https://ome-model.readthedocs.io/en/stable/developers/ome-units.html
01:00:09 (developers/Model/Containers: line 8) redirect https://docs.openmicroscopy.org/latest/ome-model/schemas/june-2016.html - with Found to https://ome-model.readthedocs.io/en/stable/schemas/june-2016.html
01:00:09 (sysadmins/server-upgrade: line 17) redirect https://docs.openmicroscopy.org/latest/omero5.5/sysadmins/server-upgrade.html - permanently to https://docs.openmicroscopy.org/omero/5.5.1/sysadmins/server-upgrade.html
01:00:09 ( index: line 35) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/
01:00:09 (developers/Server/LightAdmins: line 204) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/ome/services/blitz/repo/RepositoryDaoImpl.html
01:00:09 (developers/Server/GraphsImpl: line 70) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/cmd/graphs/BaseGraphPolicyAdjuster.html
01:00:09 (developers/Server/GraphsImpl: line 48) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/cmd/graphs/BaseGraphTraversalProcessor.html
01:00:09 ( developers/Java: line 687) redirect https://docs.openmicroscopy.org/latest/ome-model/developers/roi.html - with Found to https://ome-model.readthedocs.io/en/stable/developers/roi.html
01:00:09 (developers/Server/GraphsImpl: line 77) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/cmd/graphs/ChildOptionsPolicy.html
01:00:09 (developers/Server/GraphsImpl: line 100) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/cmd/graphs/GraphHelper.html
01:00:09 (developers/Server/GraphsImpl: line 100) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/cmd/graphs/GraphRequestFactory.html
01:00:09 (developers/Server/GraphsImpl: line 100) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/cmd/graphs/GraphUtil.html
01:00:09 (developers/json-api: line 858) redirect https://docs.openmicroscopy.org/latest/ome-model/developers/screen-plate-well.html - with Found to https://ome-model.readthedocs.io/en/stable/developers/screen-plate-well.html
01:00:09 (developers/Server/GraphsImpl: line 48) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/cmd/graphs/NullGraphTraversalProcessor.html
01:00:09 (developers/Server/GraphsImpl: line 83) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/cmd/graphs/SkipHeadPolicy.html
01:00:09 (developers/Server/GraphsImpl: line 86) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/cmd/graphs/SkipTailPolicy.html
01:00:09 (developers/Model/Units: line 16) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/model/ElectricPotentialI.html
01:00:09 (developers/Model/Units: line 17) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/model/FrequencyI.html
01:00:09 (developers/Model/Units: line 18) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/model/LengthI.html
01:00:09 (developers/Model/Units: line 19) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/model/PowerI.html
01:00:09 (developers/Model/Units: line 20) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/model/PressureI.html
01:00:09 (developers/Model/Units: line 21) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/model/TemperatureI.html
01:00:09 (developers/Model/Units: line 22) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/model/TimeI.html
01:00:09 ( index: line 35) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/
01:00:09 (developers/Modules/Api: line 126) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api.html
01:00:09 (developers/Modules/Api: line 45) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IAdmin.html
01:00:09 (developers/Modules/Api: line 50) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IConfig.html
01:00:09 (developers/Modules/Api: line 54) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IContainer.html
01:00:09 (developers/Modules/Api: line 57) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/ILdap.html
01:00:09 (developers/Modules/Api: line 61) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IMetadata.html
01:00:09 (developers/Modules/Api: line 64) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IPixels.html
01:00:09 (developers/Modules/Api: line 70) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IQuery.html
01:00:09 (developers/GettingStarted/AdvancedClientDevelopment: line 477) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IQuery.html#projection
01:00:09 (developers/Modules/Api: line 67) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IProjection.html
01:00:09 (developers/Modules/Api: line 77) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IRepositoryInfo.html
01:00:09 (developers/Modules/Api: line 74) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IRenderingSettings.html
01:00:09 (developers/Modules/Api: line 80) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IRoi.html
01:00:09 (developers/Modules/Api: line 83) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IScript.html
01:00:09 (developers/Modules/Api: line 89) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IShare.html
01:00:09 (developers/Modules/Api: line 86) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/ISession.html
01:00:09 (developers/Modules/Api: line 91) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/ITimeline.html
01:00:09 (developers/Modules/Api: line 97) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IUpdate.html
01:00:09 (developers/Modules/Api: line 94) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/ITypes.html
01:00:09 (developers/Modules/Api: line 114) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/RawPixelsStore.html
01:00:09 (developers/Modules/Api: line 111) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/RawFileStore.html
01:00:09 (developers/Modules/Api: line 117) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/RenderingEngine.html
01:00:09 (developers/Modules/Api: line 16) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/ServiceFactory.html
01:00:09 (developers/Modules/Api: line 121) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/ThumbnailStore.html
01:00:09 (developers/PythonBlitzGateway: line 111) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/ServiceFactory.html#getQueryService
01:00:09 (developers/PythonBlitzGateway: line 111) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/ServiceFactory.html#createRenderingEngine
01:00:09 (developers/Server/GraphRequests: line 83) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/Chmod2.html
01:00:09 (developers/Server/GraphRequests: line 75) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/Chgrp2.html
01:00:09 (developers/Server/GraphRequests: line 79) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/Chown2.html
01:00:09 (developers/Server/GraphRequests: line 88) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/Delete2.html
01:00:09 (developers/Server/GraphRequests: line 27) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/DiskUsage2.html
01:00:09 (developers/Server/GraphRequests: line 96) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/Duplicate.html
01:00:09 (developers/Server/GraphRequests: line 42) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/FindChildren.html
01:00:09 (developers/Server/GraphRequests: line 59) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/GraphModify2.html
01:00:09 (developers/Server/GraphRequests: line 34) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/FindParents.html
01:00:09 (developers/Server/GraphRequests: line 6) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/GraphQuery.html
01:00:09 (developers/Server/GraphRequests: line 18) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/LegalGraphTargets.html
01:00:09 (developers/Server/GraphRequests: line 104) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/SkipHead.html
01:00:09 (developers/GettingStarted: line 136) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model.html
01:00:09 (developers/Tables: line 339) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/grid/Table.html
01:00:09 (sysadmins/config: line 1664) redirect https://docs.openmicroscopy.org/latest/omero/sysadmins/customization.html#download-restrictions - with Found to https://omero.readthedocs.io/en/stable/sysadmins/customization.html#download-restrictions
01:00:09 (developers/Server/GraphRequests: line 71) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/graphs/ChildOption.html
01:00:09 (developers/Server/LightAdmins: line 22) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/AdminPrivilege.html
01:00:09 (developers/GettingStarted: line 161) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Annotation.html
01:00:09 (developers/GettingStarted: line 161) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/CommentAnnotation.html
01:00:09 (developers/GettingStarted: line 179) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Channel.html
01:00:09 (developers/GettingStarted: line 150) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Dataset.html
01:00:09 (developers/GettingStarted: line 150) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/DatasetImageLink.html
01:00:09 (developers/GettingStarted: line 161) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/DatasetAnnotationLink.html
01:00:09 (developers/GettingStarted: line 161) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/FileAnnotation.html
01:00:09 (developers/GettingStarted: line 150) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Image.html
01:00:09 (developers/Server/Permissions: line 380) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Permissions.html#canAnnotate
01:00:09 (developers/Server/Permissions: line 381) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Permissions.html#canChgrp
01:00:09 (developers/Server/Permissions: line 382) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Permissions.html#canChown
01:00:09 (developers/Server/Permissions: line 383) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Permissions.html#canDelete
01:00:09 (developers/Server/Permissions: line 385) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Permissions.html#canLink
01:00:09 (developers/Server/Permissions: line 384) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Permissions.html#canEdit
01:00:09 (developers/GettingStarted: line 179) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Pixels.html
01:00:09 (developers/GettingStarted: line 150) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Project.html
01:00:09 (developers/GettingStarted: line 161) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/ProjectAnnotationLink.html
01:00:09 (developers/GettingStarted: line 150) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/ProjectDatasetLink.html
01:00:09 (developers/Server/LightAdmins: line 160) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/sys/EventContext.html
01:00:09 ( developers/Java: line 52) ok https://docs.openmicroscopy.org/omero-gateway/5.9.1/javadoc//omero/gateway/facility/package-summary.html
01:00:09 ( developers/Java: line 44) ok https://docs.openmicroscopy.org/omero-gateway/5.9.1/javadoc/omero/gateway/Gateway.html
01:00:09 ( developers/Java: line 52) ok https://docs.openmicroscopy.org/omero-gateway/5.9.1/javadoc/omero/gateway/facility/BrowseFacility.html
01:00:09 (developers/Model/EveryObject: line 92) ok https://docs.openmicroscopy.org/omero-model/5.6.14/javadoc/ome/model/ILink.html
01:00:09 (developers/Model/EveryObject: line 54) ok https://docs.openmicroscopy.org/omero-model/5.6.14/javadoc/ome/model/IMutable.html
01:00:09 ( developers/Java: line 57) ok https://docs.openmicroscopy.org/omero-gateway/5.9.1/javadoc/omero/gateway/model/DataObject.html
01:00:09 ( sysadmins/index: line 15) redirect https://docs.openmicroscopy.org/latest/ome-model/specifications/ - with Found to https://ome-model.readthedocs.io/en/stable/specifications/
01:00:09 (developers/Model/EveryObject: line 24) ok https://docs.openmicroscopy.org/omero-model/5.6.14/javadoc/ome/model/IEnum.html
01:00:10 (developers/Model/EveryObject: line 467) ok https://docs.openmicroscopy.org/omero-model/5.6.14/javadoc/ome/model/units/Frequency.html
01:00:10 (developers/Model/EveryObject: line 580) ok https://docs.openmicroscopy.org/omero-model/5.6.14/javadoc/ome/model/units/Length.html
01:00:10 (developers/Model/EveryObject: line 425) ok https://docs.openmicroscopy.org/omero-model/5.6.14/javadoc/ome/model/units/ElectricPotential.html
01:00:10 (developers/Model/EveryObject: line 114) ok https://docs.openmicroscopy.org/omero-model/5.6.14/javadoc/ome/model/units/Power.html
01:00:10 (developers/Model/EveryObject: line 1190) ok https://docs.openmicroscopy.org/omero-model/5.6.14/javadoc/ome/model/units/Pressure.html
01:00:10 (developers/Model/EveryObject: line 1190) ok https://docs.openmicroscopy.org/omero-model/5.6.14/javadoc/ome/model/units/Temperature.html
01:00:10 (developers/Model/EveryObject: line 2238) ok https://docs.openmicroscopy.org/omero-model/5.6.14/javadoc/ome/model/units/Time.html
01:00:10 (developers/Server/LightAdmins: line 219) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/logic/AdminImpl.html
01:00:10 (developers/Server/LightAdmins: line 219) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/security/basic/BasicACLVoter.html
01:00:10 (developers/Server/LightAdmins: line 242) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/security/basic/LightAdminPrivilegesCleanup.html
01:00:10 (developers/Server/LightAdmins: line 102) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/security/basic/LightAdminPrivilegesSecurityFilter.html
01:00:10 (developers/Server/LightAdmins: line 219) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/security/basic/OmeroInterceptor.html
01:00:10 (developers/Server/GraphsImpl: line 11) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/GraphPathBean.html
01:00:10 (developers/Server/GraphsImpl: line 60) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/GraphPolicy.html
01:00:10 (developers/Server/GraphsImpl: line 60) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/GraphPolicyRule.html
01:00:10 (developers/Server/GraphsImpl: line 11) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/GraphPathReport.html
01:00:10 (developers/Server/GraphsImpl: line 32) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/GraphTraversal.PlanExecutor.html
01:00:10 (developers/Server/GraphsImpl: line 88) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/GraphPolicyRulePredicate.html
01:00:10 (developers/Server/GraphsImpl: line 88) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/GroupPredicate.html
01:00:10 (developers/Server/GraphsImpl: line 32) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/GraphTraversal.Processor.html
01:00:10 (developers/Server/GraphsImpl: line 22) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/GraphTraversal.html
01:00:10 (developers/Server/GraphsImpl: line 88) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/PermissionsPredicate.html
01:00:10 (developers/Server/GraphsImpl: line 42) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/ModelObjectSequencer.html
01:00:10 (developers/Server/LightAdmins: line 236) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/util/DBUserCheck.html
01:00:10 ( users/history: line 986) ok https://docs.openmicroscopy.org/omero/5.3.0/developers/whatsnew.html
01:00:10 (sysadmins/whatsnew: line 16) redirect https://docs.openmicroscopy.org/omero/5.5/sysadmins/whatsnew.html - permanently to https://docs.openmicroscopy.org/omero/5.5.1/sysadmins/whatsnew.html
01:00:10 (users/cli/import-target: line 157) ok https://docs.oracle.com/javase/7/docs/api/java/util/regex/Pattern.html
01:00:10 (developers/Modules/Api: line 223) ok https://docs.oracle.com/javase/tutorial/java/annotations/basics.html
01:00:10 (sysadmins/server-ldap: line 318) ok https://docs.oracle.com/javase/jndi/tutorial/ldap/referral/jndi.html
01:00:10 (sysadmins/config: line 811) ok https://docs.oracle.com/javase/jndi/tutorial/ldap/connect/create.html
01:00:10 (sysadmins/config: line 924) ok https://docs.oracle.com/javase/tutorial/jndi/newstuff/readtimeout.html
01:00:10 (sysadmins/config: line 2205) redirect https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples - with Found to https://omero.readthedocs.io/en/stable/sysadmins/grid.html#deployment-examples
01:00:10 (sysadmins/dropbox: line 152) ok https://docs.python.org/2.7/library/site.html
01:00:10 (sysadmins/config: line 1011) ok https://docs.python.org/3/library/logging.html#levels
01:00:11 (sysadmins/version-requirements: line 248) ok https://download.postgresql.org/pub/repos/yum/12/redhat/rhel-9-x86_64/
01:00:11 (developers/testing: line 342) ok https://docs.pytest.org/en/latest/how-to/usage.html
01:00:11 (sysadmins/python3-migration: line 84) ok https://downloads.openmicroscopy.org
01:00:11 (developers/testing: line 45) ok https://docs.pytest.org/en/latest/
01:00:11 (sysadmins/unix/server-install-homebrew: line 204) redirect https://downloads.openmicroscopy.org/latest/omero/artifacts/ - permanently to https://downloads.openmicroscopy.org/omero/5.6.11/artifacts/
01:00:11 (sysadmins/UpgradeCheck: line 29) redirect https://downloads.openmicroscopy.org/latest/omero - permanently to https://downloads.openmicroscopy.org/omero/5.6.11/
01:00:11 (developers/GettingStarted: line 56) redirect https://downloads.openmicroscopy.org/latest/omero5.5/ - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/
01:00:11 (developers/analysis: line 12) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/ - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/api/
01:00:11 ( index: line 35) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/ - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/
01:00:11 (developers/Server/HowToCreateAService: line 101) redirect https://docs.spring.io/spring/docs/2.0.x/reference/beans.html#beans-factory-scopes-singleton - permanently to https://docs.spring.io/spring-framework/docs/2.0.x/reference/beans.html#beans-factory-scopes-singleton
01:00:11 (developers/PythonBlitzGateway: line 91) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/omero/omero.gateway.html - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/omero/omero.gateway.html
01:00:11 (developers/PythonBlitzGateway: line 171) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/omero/omero.gateway.html#omero.gateway.ImageWrapper - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/omero/omero.gateway.html#omero.gateway.ImageWrapper
01:00:11 (developers/PythonBlitzGateway: line 19) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/omero/omero.gateway.html#omero.gateway._BlitzGateway - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/omero/omero.gateway.html#omero.gateway._BlitzGateway
01:00:11 (developers/GettingStarted/AdvancedClientDevelopment: line 477) ok https://downloads.openmicroscopy.org/presentations/2017/Team-Training/Hibernate/
01:00:11 (developers/Server/Aop: line 77) redirect https://docs.spring.io/spring/docs/2.0.x/reference/aop.html - permanently to https://docs.spring.io/spring-framework/docs/2.0.x/reference/aop.html
01:00:11 (developers/PythonBlitzGateway: line 123) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/omero/omero.gateway.html#omero.gateway._BlitzGateway._createProxies - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/omero/omero.gateway.html#omero.gateway._BlitzGateway._createProxies
01:00:11 (sysadmins/ansible-docker: line 29) ok https://downloads.openmicroscopy.org/presentations/2020/Dundee/Workshops/OME2020-OMERO-Installation
01:00:11 (developers/Web/WebGateway: line 15) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/omeroweb/omeroweb.webgateway.html#module-omeroweb.webgateway.urls - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/omeroweb/omeroweb.webgateway.html#module-omeroweb.webgateway.urls
01:00:11 (developers/Server/Aop: line 86) ok https://en.wikipedia.org/wiki/Aspect-oriented_programming
01:00:11 (developers/GettingStarted/AdvancedClientDevelopment: line 56) ok https://en.wikipedia.org/wiki/Fallacies_of_Distributed_Computing
01:00:12 (sysadmins/version-requirements: line 195) ok https://download.rockylinux.org/pub/rocky/9/BaseOS/x86_64/os/Packages/
01:00:12 (sysadmins/in-place-import: line 288) ok https://en.wikipedia.org/wiki/Hard_link
01:00:12 (developers/Model/Units: line 185) ok https://en.wikipedia.org/wiki/International_System_of_Units
01:00:12 (sysadmins/server-ldap: line 4) ok https://en.wikipedia.org/wiki/Lightweight_Directory_Access_Protocol
01:00:12 (sysadmins/server-ldap: line 322) ok https://en.wikipedia.org/wiki/Active_Directory
01:00:12 (sysadmins/server-backup-and-restore: line 216) ok https://en.wikipedia.org/wiki/List_of_backup_software
01:00:12 (developers/GettingStarted/AdvancedClientDevelopment: line 78) ok https://en.wikipedia.org/wiki/Interface_description_language
01:00:12 (sysadmins/config: line 2835) ok https://en.wikipedia.org/wiki/List_of_tz_database_time_zones
01:00:12 (sysadmins/server-syslog: line 4) ok https://en.wikipedia.org/wiki/Syslog
01:00:12 (developers/Model/Units: line 183) ok https://en.wikipedia.org/wiki/Units_of_measurement
01:00:12 (developers/Model/Units: line 184) ok https://en.wikipedia.org/wiki/System_of_measurement
01:00:12 (developers/index: line 28) redirect https://drive.google.com/file/d/1ld6s678JWRF15qUT4_3LyTE4IGYh-wRZ/ - with Found to https://drive.google.com/file/d/1ld6s678JWRF15qUT4_3LyTE4IGYh-wRZ/edit
01:00:13 (sysadmins/version-requirements: line 119) ok https://endoflife.date/rocky-linux
01:00:13 (sysadmins/version-requirements: line 99) ok https://endoflife.date/rhel
01:00:13 (sysadmins/version-requirements: line 103) ok https://endoflife.date/centos
01:00:13 (developers/Server/Aop: line 25) redirect https://eclipse.org/aspectj/ - permanently to https://eclipse.dev/aspectj/
01:00:13 (sysadmins/limitations: line 49) ok https://forum.image.sc/t/pixeldata-threads-and-pyramid-generation-issues/49794
01:00:13 (sysadmins/python3-migration: line 62) redirect https://forum.image.sc/c/data - permanently to https://forum.image.sc/c/data-management/29
01:00:13 (sysadmins/system-migration: line 39) ok https://forum.image.sc/tag/omero
01:00:13 (sysadmins/python3-migration: line 52) ok https://galaxy.ansible.com/ome
01:00:13 (sysadmins/system-migration: line 33) ok https://galaxy.ansible.com/ui/standalone/namespaces/5249/
01:00:13 (sysadmins/system-migration: line 33) ok https://galaxy.ansible.com/ui/standalone/roles/ome/omero_web/
01:00:14 (sysadmins/system-migration: line 33) ok https://galaxy.ansible.com/ui/standalone/roles/ome/omero_server/
01:00:14 (sysadmins/limitations: line 61) ok https://github.com/BIOP/ijp-kheops
01:00:14 (sysadmins/unix/server-install-homebrew: line 27) ok https://github.com/Homebrew/brew/blob/master/docs/Installation.md
01:00:14 ( developers/Web: line 73) ok https://github.com/German-BioImaging/omero-autotag
01:00:14 ( developers/Web: line 73) ok https://github.com/German-BioImaging/omero-tagsearch
01:00:14 (sysadmins/limitations: line 61) ok https://github.com/AllenCellModeling/aicsimageio
01:00:14 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 173) ok https://github.com/adamchainz/django-cors-headers
01:00:15 (developers/scripts/index: line 53) ok https://github.com/aherbert/omero-user-scripts
01:00:15 (developers/Python: line 60) ok https://github.com/TheJacksonLaboratory/ezomero
01:00:15 (developers/scripts/index: line 55) ok https://github.com/QBI-Microscopy/omero-user-scripts
01:00:15 (developers/Tables: line 18) ok https://github.com/PyTables/PyTables/releases/tag/v3.9.1
01:00:15 (developers/scripts/index: line 57) ok https://github.com/dsudar/OMEROscripts
01:00:15 (sysadmins/server-upgrade: line 74) redirect https://github.com/glencoesoftware/omero-ms-image-region/tree/v0.5.1/src/dist/MemoFileRegenerationReadMe.md - permanently to https://github.com/glencoesoftware/omero-ms-image-region/blob/v0.5.1/src/dist/MemoFileRegenerationReadMe.md
01:00:15 (developers/scripts/index: line 47) ok https://github.com/glencoesoftware/omero-user-scripts
01:00:15 (sysadmins/version-requirements: line 387) ok https://github.com/glencoesoftware/zeroc-ice-rhel9-x86_64
01:00:15 (developers/Python: line 21) redirect https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl - with Found to https://objects.githubusercontent.com/github-production-release-asset-2e65be/543662060/9ce94eef-3ec3-4651-a4ac-af4ecb7b5d87?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=releaseassetproduction%2F20240722%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20240722T010015Z&X-Amz-Expires=300&X-Amz-Signature=fa5336ff659ef08dedd561cf21a9b98cf76a87195e694f77bed84bce4828135c&X-Amz-SignedHeaders=host&actor_id=0&key_id=0&repo_id=543662060&response-content-disposition=attachment%3B%20filename%3Dzeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl&response-content-type=application%2Foctet-stream
01:00:16 (sysadmins/version-requirements: line 388) ok https://github.com/glencoesoftware/zeroc-ice-ubuntu2204-x86_64
01:00:16 (sysadmins/limitations: line 61) ok https://github.com/libvips/libvips
01:00:16 (sysadmins/config: line 2307) redirect https://github.com/ottoyiu/django-cors-headers - permanently to https://github.com/adamchainz/django-cors-headers
01:00:16 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 230) ok https://github.com/jazzband/django-redis
01:00:16 (sysadmins/unix/server-install-homebrew: line 382) redirect https://github.com/mxcl/homebrew/wiki/Bug-Fixing-Checklist - with Found to https://github.com/Homebrew/legacy-homebrew
01:00:16 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 105) ok https://github.com/jazzband/django-redis/
01:00:16 (developers/scripts/index: line 49) ok https://github.com/openmicroscopy/omero-example-scripts
01:00:16 ( users/history: line 359) ok https://gradle.org
01:00:16 (developers/scripts/index: line 51) ok https://github.com/ppouchin/omero-user-scripts
01:00:16 (developers/build-system: line 12) ok https://gradle.org/
01:00:17 (sysadmins/server-setup-examples: line 125) ok https://idr.openmicroscopy.org/about/deployment
01:00:17 (sysadmins/server-setup-examples: line 125) ok https://idr.openmicroscopy.org/about/studies
01:00:17 (sysadmins/python3-migration: line 59) ok https://hub.docker.com/u/openmicroscopy
01:00:17 (sysadmins/config: line 1859) redirect https://google.github.io/guava/releases/27.1-jre/api/docs/com/google/common/cache/CacheBuilderSpec.html - permanently to https://guava.dev/releases/27.1-jre/api/docs/com/google/common/cache/CacheBuilderSpec.html
01:00:17 (developers/logging: line 4) ok https://logback.qos.ch/
01:00:17 (developers/GettingStarted: line 60) redirect https://jenkins.io - permanently to https://www.jenkins.io/
01:00:17 (developers/logging: line 32) ok https://logback.qos.ch/manual/configuration.html#autoScan
01:00:17 (sysadmins/server-setup-examples: line 125) ok https://idr.openmicroscopy.org
01:00:17 ( users/history: line 546) ok https://idr.openmicroscopy.org/
01:00:18 (sysadmins/config: line 502) ok https://jdbc.postgresql.org/documentation/use/#connecting-to-the-database
01:00:18 (developers/Modules/Search: line 4) ok https://lucene.apache.org
01:00:18 (developers/Modules/Search: line 267) ok https://lucene.apache.org/core/3_6_0/queryparsersyntax.html
01:00:18 (sysadmins/public: line 244) ok https://nginx.org/
01:00:18 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 208) ok https://nginx.org/en/docs/http/configuring_https_servers.html
01:00:18 (sysadmins/troubleshooting: line 405) ok https://matplotlib.org/
01:00:18 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 324) ok https://nginx.org/en/docs/http/ngx_http_proxy_module.html#proxy_buffering
01:00:18 (sysadmins/server-performance: line 201) ok https://metrics.dropwizard.io/
01:00:18 (sysadmins/limitations: line 107) ok https://ngff.openmicroscopy.org/latest/
01:00:18 (sysadmins/version-requirements: line 454) ok https://nginx.org/en/download.html
01:00:18 ( index: line 29) ok https://omero-guides.readthedocs.io/en/latest/
01:00:18 (sysadmins/public: line 184) ok https://omero-guides.readthedocs.io/en/latest/figure/docs/index.html
01:00:19 (sysadmins/restricted-admins: line 138) ok https://omero-guides.readthedocs.io/en/latest/download/docs/index.html
01:00:19 (sysadmins/restricted-admins: line 248) ok https://omero-guides.readthedocs.io/en/latest/example.html
01:00:19 ( sysadmins/index: line 5) ok https://omero-guides.readthedocs.io/en/latest/example_facility_manager.html
01:00:19 (sysadmins/server-permissions: line 144) ok https://omero-guides.readthedocs.io/en/latest/introduction/docs/data-management.html
01:00:19 (developers/Web/WebGateway: line 9) ok https://omero-guides.readthedocs.io/en/latest/figure/docs/omero_figure.html
01:00:19 (sysadmins/restricted-admins: line 315) ok https://omero-guides.readthedocs.io/en/latest/introduction/docs/data-management.html#manage-images-in-datasets-projects
01:00:19 (developers/Model/KeyValuePairs: line 87) ok https://omero-guides.readthedocs.io/en/latest/introduction/docs/annotate.html
01:00:19 (sysadmins/cli/light-admins: line 4) ok https://omero-guides.readthedocs.io/en/latest/introduction/docs/group-user-management.html
01:00:19 (sysadmins/restricted-admins: line 299) ok https://omero-guides.readthedocs.io/en/latest/introduction/docs/data-management.html#movedowners
01:00:19 (sysadmins/server-permissions: line 101) ok https://omero-guides.readthedocs.io/en/latest/introduction/docs/data-publication.html
01:00:19 (sysadmins/restricted-admins: line 138) ok https://omero-guides.readthedocs.io/en/latest/iviewer/docs/index.html
01:00:19 (sysadmins/public: line 156) redirect https://omero.lifesci.dundee.ac.uk - with Found to https://omero.lifesci.dundee.ac.uk/webclient/login/?url=%2Fwebclient%2F
01:00:19 (sysadmins/public: line 198) redirect https://omero.lifesci.dundee.ac.uk/webclient/?show=project-27917 - with Found to https://omero.lifesci.dundee.ac.uk/webclient/login/?url=%2Fwebclient%2F%3Fshow%3Dproject-27917
01:00:19 (sysadmins/public: line 128) redirect https://omero.lifesci.dundee.ac.uk/pub/schleicher-et-al-2017 - with Found to https://omero.lifesci.dundee.ac.uk/webclient/login/?url=%2Fwebclient%2F%3Fshow%3Dproject-27936
01:00:20 (sysadmins/public: line 198) redirect https://omero.lifesci.dundee.ac.uk/webclient/?show=project-27920 - with Found to https://omero.lifesci.dundee.ac.uk/webclient/login/?url=%2Fwebclient%2F%3Fshow%3Dproject-27920
01:00:20 (sysadmins/public: line 221) redirect https://omero.lifesci.dundee.ac.uk/webclient/?show=project-27936 - with Found to https://omero.lifesci.dundee.ac.uk/webclient/login/?url=%2Fwebclient%2F%3Fshow%3Dproject-27936
01:00:20 (sysadmins/public: line 214) redirect https://omero.lifesci.dundee.ac.uk/webclient/?show=tag-364188 - with Found to https://omero.lifesci.dundee.ac.uk/webclient/login/?url=%2Fwebclient%2F%3Fshow%3Dtag-364188
01:00:20 (sysadmins/restricted-admins: line 191) ok https://omero-guides.readthedocs.io/en/latest/upload/docs/import-desktop-client.html#import-for-another-user
01:00:20 (developers/index: line 131) ok https://omero-insight.readthedocs.io/en/latest/
01:00:20 (sysadmins/ansible-docker: line 31) ok https://omero.readthedocs.io/en/stable/sysadmins/system-requirements.html
01:00:20 (sysadmins/ansible-docker: line 30) ok https://omero.readthedocs.io/en/stable/sysadmins/unix/server-centos7-ice36.html
01:00:20 (developers/Web/CreateApp: line 35) ok https://omero.readthedocs.io/en/latest/developers/Python.html
01:00:20 (developers/Python: line 7) redirect https://omero-py.readthedocs.io/ - with Found to https://omero-py.readthedocs.io/en/stable/
01:00:20 (sysadmins/ansible-docker: line 160) ok https://omero.readthedocs.io/en/stable/sysadmins/unix/server-centos7-ice36.html#configuring-omero-server
01:00:20 (developers/Search/FileParsers: line 24) ok https://pdfbox.apache.org
01:00:21 (sysadmins/ansible-docker: line 4) ok https://omero.readthedocs.io/en/stable/sysadmins
01:00:21 (sysadmins/server-performance: line 174) redirect https://openjdk.java.net/tools/svc/jconsole/ - permanently to https://openjdk.org/tools/svc/jconsole/
01:00:21 (sysadmins/version-requirements: line 298) ok https://peps.python.org/pep-0569/
01:00:21 (sysadmins/version-requirements: line 308) ok https://peps.python.org/pep-0619/
01:00:21 (sysadmins/version-requirements: line 303) ok https://peps.python.org/pep-0596/
01:00:21 (sysadmins/version-requirements: line 313) ok https://peps.python.org/pep-0664/
01:00:21 (sysadmins/version-requirements: line 318) ok https://peps.python.org/pep-0693/
01:00:21 (developers/Python: line 7) ok https://pypi.org
01:00:21 (developers/Web/ReleaseApp: line 21) redirect https://packaging.python.org/guides/distributing-packages-using-setuptools/ - with Found to https://packaging.python.org/en/latest/guides/distributing-packages-using-setuptools/
01:00:21 (sysadmins/server-upgrade: line 331) ok https://pypi.org/project/omero-certificates/
01:00:21 (sysadmins/limitations: line 61) ok https://pypi.org/project/tifffile/
01:00:21 (sysadmins/client-server-ssl: line 52) ok https://pypi.org/project/zeroc-icecertutils/
01:00:21 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 344) ok https://pypi.org/project/futures
01:00:21 (sysadmins/ansible-docker: line 137) ok https://pypi.org/search/?q=omero
01:00:21 (sysadmins/limitations: line 61) ok https://qupath.github.io/
01:00:21 (developers/Server/Aop: line 12) ok https://spring.io
01:00:21 (sysadmins/server-ldap: line 56) ok https://spring.io/projects/spring-ldap/
01:00:22 (sysadmins/omeroweb-upgrade: line 124) ok https://redis.io/
01:00:22 (sysadmins/unix/server-install-homebrew: line 432) ok https://stackoverflow.com/questions/25970132/pg-tblspc-missing-after-installation-of-latest-version-of-os-x-yosemite-or-el
01:00:22 (developers/cli/extending: line 16) ok https://pypi.org/search/?q=omero+cli
01:00:22 (developers/testing: line 430) redirect https://pytest.org/ - with Found to https://docs.pytest.org/en/8.2.x/
01:00:22 (sysadmins/omeroweb-upgrade: line 4) ok https://trello.com/b/4EXb35xQ/getting-started
01:00:22 (sysadmins/server-syslog: line 47) redirect https://tools.ietf.org/html/rfc3164 - permanently to https://datatracker.ietf.org/doc/html/rfc3164
01:00:22 (sysadmins/omeromovie: line 36) redirect https://pillow.readthedocs.org - with Found to https://pillow.readthedocs.io/en/stable/
01:00:22 (sysadmins/version-requirements: line 454) ok https://trac.nginx.org/nginx/roadmap
01:00:22 (sysadmins/server-performance: line 160) ok https://visualvm.github.io/
01:00:23 (sysadmins/unix/server-installation: line 180) ok https://wiki.ubuntu.com/Releases
01:00:23 (sysadmins/server-ldap: line 336) redirect https://technet.microsoft.com/en-us/library/cc728188(v=ws.10).aspx - permanently to https://learn.microsoft.com/en-us/previous-versions/windows/it-pro/windows-server-2003/cc728188(v=ws.10)?redirectedfrom=MSDN
01:00:23 (sysadmins/ansible-docker: line 26) ok https://www.ansible.com/
01:00:23 (sysadmins/version-requirements: line 88) ok https://www.centos.org/
01:00:24 (sysadmins/unix/install-web/web-deployment: line 11) redirect https://wsgi.readthedocs.org - with Found to https://wsgi.readthedocs.io/en/latest/
01:00:24 ( developers/Cpp: line 141) redirect https://www.cmake.org/cmake/help/documentation.html - permanently to https://cmake.org/documentation/
01:00:24 ( developers/Cpp: line 291) redirect https://www.cmake.org/cmake/help/v3.0/ - permanently to https://cmake.org/cmake/help/v3.0/
01:00:24 (sysadmins/server-setup-examples: line 68) redirect https://www.biozentrum.unibas.ch/imcf - permanently to https://www.biozentrum.unibas.ch/facilities/technology-platforms/technology-platforms-a-z/overview/unit/imaging-core-facility
01:00:24 ( developers/Web: line 9) ok https://www.djangoproject.com/
01:00:24 ( developers/Cpp: line 291) redirect https://www.cmake.org/cmake/help/v3.0/manual/cmake-variables.7.html#variables-that-change-behavior - permanently to https://cmake.org/cmake/help/v3.0/manual/cmake-variables.7.html#variables-that-change-behavior
01:00:24 (sysadmins/unix/server-postgresql: line 34) ok https://www.enterprisedb.com/
01:00:25 (sysadmins/omeromovie: line 21) ok https://www.divx.com/
01:00:25 (developers/Clients/ImportLibrary: line 32) ok https://www.glencoesoftware.com/
01:00:25 (sysadmins/limitations: line 61) ok https://www.glencoesoftware.com/blog/2019/12/09/converting-whole-slide-images-to-OME-TIFF.html
01:00:25 (developers/Python: line 12) ok https://www.glencoesoftware.com/blog/2023/12/08/ice-binaries-for-omero.html
01:00:25 (sysadmins/limitations: line 61) ok https://www.glencoesoftware.com/products/ngff-converter/
01:00:25 (sysadmins/server-setup-examples: line 7) redirect https://www.cellnanos.uni-osnabrueck.de/en/startpage.html - temporarily to https://www.cellnanos.uni-osnabrueck.de/en/home.html
01:00:25 (sysadmins/system-requirements: line 56) ok https://www.cpubenchmark.net/singleThread.html#server-thread
01:00:26 ( users/history: line 845) ok https://www.janelia.org/
01:00:26 (developers/scripts/matlab-scripts: line 10) ok https://www.mathworks.com/help/matlab/matlab_external/install-the-matlab-engine-for-python.html
01:00:26 (developers/Server/Context: line 21) ok https://www.martinfowler.com/eaaCatalog/unitOfWork.html
01:00:26 (sysadmins/server-setup-examples: line 100) redirect https://www.gred-clermont.fr - permanently to https://www.igred.fr/
01:00:26 (sysadmins/server-security: line 31) ok https://www.iana.org/assignments/service-names-port-numbers/service-names-port-numbers.xml
01:00:27 (sysadmins/server-performance: line 187) ok https://www.nagios.org/
01:00:27 (developers/Clients/ImportLibrary: line 31) ok https://www.openmicroscopy.org
01:00:27 ( users/history: line 1173) ok https://www.openmicroscopy.org/2015/12/07/bio-formats-5-1-7.html
01:00:27 ( users/history: line 1144) ok https://www.openmicroscopy.org/2016/02/15/bio-formats-5-1-8.html
01:00:27 ( users/history: line 1099) ok https://www.openmicroscopy.org/2016/04/18/bio-formats-5-1-9.html
01:00:27 ( users/history: line 1014) ok https://www.openmicroscopy.org/2016/05/09/bio-formats-5-1-10.html
01:00:27 ( users/history: line 918) ok https://www.openmicroscopy.org/2017/04/13/bio-formats-5-4-1.html
01:00:27 ( users/history: line 901) ok https://www.openmicroscopy.org/2017/05/08/bio-formats-5-5-0.html
01:00:27 ( users/history: line 867) ok https://www.openmicroscopy.org/2017/06/15/bio-formats-5-5-2.html
01:00:27 ( users/history: line 833) ok https://www.openmicroscopy.org/2017/07/05/bio-formats-5-5-3.html
01:00:27 ( users/history: line 817) ok https://www.openmicroscopy.org/2017/09/20/bio-formats-5-7-1.html
01:00:27 (sysadmins/limitations: line 61) ok https://www.openmicroscopy.org/2018/11/29/ometiffpyramid.html
01:00:27 (developers/Model/StructuredAnnotations: line 62) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2013-06/SA_xsd.html#Annotation
01:00:27 ( index: line 39) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome.html
01:00:27 (users/community-resources: line 14) ok https://www.openmicroscopy.org/bio-formats
01:00:27 (users/community-resources: line 23) redirect https://www.openmicroscopy.org/community/ - permanently to https://www.openmicroscopy.org/community/index.php
01:00:27 (sysadmins/server-performance: line 149) ok https://www.openmicroscopy.org/community/viewtopic.php?f=4&t=7400
01:00:27 (sysadmins/dropbox: line 152) ok https://www.openmicroscopy.org/community/viewtopic.php?f=4&t=7810#p15910
01:00:27 (sysadmins/server-ldap: line 315) ok https://www.openmicroscopy.org/community/viewtopic.php?f=5&t=14
01:00:27 (sysadmins/unix/server-installation: line 472) ok https://www.openmicroscopy.org/community/viewtopic.php?f=5&t=360#p922
01:00:27 (sysadmins/troubleshooting: line 282) ok https://www.openmicroscopy.org/community/viewtopic.php?f=5&t=7537
01:00:27 (sysadmins/server-upgrade: line 255) ok https://www.openmicroscopy.org/community/viewtopic.php?f=5&t=7778
01:00:27 (sysadmins/troubleshooting: line 284) ok https://www.openmicroscopy.org/community/viewtopic.php?f=6&t=7722&p=15264&hilit=CheckedPath#p15264
01:00:27 ( users/index: line 59) ok https://www.openmicroscopy.org/explore/
01:00:27 (developers/Web/LinkingFromWebclient: line 86) ok https://www.ncbi.nlm.nih.gov/protein/000397
01:00:27 (users/clients-overview: line 28) ok https://www.openmicroscopy.org/omero/analyze
01:00:27 (sysadmins/ansible-docker: line 32) ok https://www.openmicroscopy.org/omero/apps/
01:00:27 (developers/Matlab: line 12) ok https://www.openmicroscopy.org/omero/downloads/
01:00:27 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 77) ok https://www.openmicroscopy.org/omero/figure/
01:00:27 (sysadmins/ansible-docker: line 25) ok https://www.openmicroscopy.org/omero/institution/getting-started.html
01:00:27 (sysadmins/server-backup-and-restore: line 162) redirect https://www.nongnu.org/rdiff-backup/docs.html - with Found to https://rdiff-backup.net/
01:00:27 (sysadmins/public: line 97) ok https://www.openmicroscopy.org/omero/iviewer/
01:00:28 ( users/index: line 54) ok https://www.openmicroscopy.org/omero/new
01:00:28 ( users/index: line 54) ok https://www.openmicroscopy.org/omero/scientists
01:00:28 (sysadmins/server-security: line 21) ok https://www.openmicroscopy.org/security/
01:00:28 ( index: line 28) ok https://www.openmicroscopy.org/security/advisories/
01:00:28 ( users/history: line 1720) ok https://www.openmicroscopy.org/security/advisories/2012-SV1-ldap-authentication
01:00:28 ( users/history: line 1552) ok https://www.openmicroscopy.org/security/advisories/2014-SV1-unicode-passwords
01:00:28 ( users/history: line 1553) ok https://www.openmicroscopy.org/security/advisories/2014-SV2-empty-passwords
01:00:28 ( users/history: line 1513) ok https://www.openmicroscopy.org/security/advisories/2014-SV3-csrf
01:00:28 ( users/history: line 1514) ok https://www.openmicroscopy.org/security/advisories/2014-SV4-poodle
01:00:28 ( users/history: line 1058) ok https://www.openmicroscopy.org/security/advisories/2016-SV1-cleanse
01:00:28 ( users/history: line 1043) ok https://www.openmicroscopy.org/security/advisories/2016-SV2-share
01:00:28 ( users/history: line 996) ok https://www.openmicroscopy.org/security/advisories/2017-SV1-filename
01:00:28 ( users/history: line 1003) ok https://www.openmicroscopy.org/security/advisories/2017-SV3-delete-script
01:00:28 ( users/history: line 1000) ok https://www.openmicroscopy.org/security/advisories/2017-SV2-edit-rw
01:00:28 (sysadmins/server-upgrade: line 134) ok https://www.openmicroscopy.org/security/advisories/2017-SV5-filename-2
01:00:28 ( users/history: line 822) ok https://www.openmicroscopy.org/security/advisories/2017-SV4-guest-user
01:00:28 ( users/history: line 607) ok https://www.openmicroscopy.org/security/advisories/2017-SV6-job-file-link
01:00:28 (developers/Modules/Api: line 28) ok https://www.openmicroscopy.org/support/
01:00:28 (developers/Server/ExtendingOmero: line 329) redirect https://www.nginx.com/resources/wiki/ - permanently to https://docs.nginx.com
01:00:28 (developers/Server/ExtendingOmero: line 6) redirect https://www.openmicroscopy.org/forums - permanently to https://forum.image.sc/c/data-management/29
01:00:28 (sysadmins/in-place-import: line 292) ok https://www.openwall.com/lists/kernel-hardening/2012/02/21/20
01:00:28 (sysadmins/version-requirements: line 446) redirect https://www.oracle.com/technetwork/java/javase/downloads/index-jsp-138363.html - permanently to https://www.oracle.com/java/technologies/downloads/?er=221886
01:00:28 (sysadmins/unix/server-installation: line 124) redirect https://www.oracle.com/technetwork/java/javase/downloads/index.html - permanently to https://www.oracle.com/java/technologies/downloads/?er=221886
01:00:29 (sysadmins/version-requirements: line 395) ok https://www.oracle.com/technetwork/java/eol-135779.html
01:00:29 (developers/index: line 28) ok https://www.gnu.org/licenses/licenses.html#GPL
01:00:29 (sysadmins/unix/server-postgresql: line 145) redirect https://www.postgresql.org/docs/current/interactive/client-authentication.html - permanently to https://www.postgresql.org/docs/current/client-authentication.html
01:00:29 (sysadmins/unix/server-postgresql: line 140) redirect https://www.postgresql.org/docs/current/interactive/index.html - permanently to https://www.postgresql.org/docs/current/index.html
01:00:29 (sysadmins/unix/server-postgresql: line 143) redirect https://www.postgresql.org/docs/current/interactive/runtime-config-connection.html - permanently to https://www.postgresql.org/docs/current/runtime-config-connection.html
01:00:29 (sysadmins/version-requirements: line 264) ok https://www.postgresql.org/download/
01:00:29 (developers/GettingStarted: line 126) ok https://www.pgadmin.org/
01:00:29 (sysadmins/server-backup-and-restore: line 112) ok https://www.postgresql.org/docs/10/backup.html
01:00:29 ( users/cli/index: line 4) ok https://www.python.org
01:00:29 (sysadmins/unix/server-postgresql: line 12) ok https://www.postgresql.org/support/versioning/
01:00:29 (sysadmins/version-requirements: line 293) redirect https://www.python.org/dev/peps/pep-0537/ - with Found to https://peps.python.org/pep-0537/
01:00:29 (sysadmins/version-requirements: line 288) redirect https://www.python.org/dev/peps/pep-0494/ - with Found to https://peps.python.org/pep-0494/
01:00:30 (developers/Web/CSRF: line 14) ok https://www.rfc-editor.org/rfc/rfc2616.html#section-9.1.1
01:00:30 (sysadmins/config: line 1446) ok https://www.quartz-scheduler.org/api/1.8.6/org/quartz/CronExpression.html
01:00:30 (developers/logging: line 4) ok https://www.slf4j.org
01:00:30 (sysadmins/omeromovie: line 36) redirect https://www.scipy.org/install.html - permanently to https://scipy.org/install/
01:00:30 (sysadmins/server-syslog: line 52) ok https://www.splunk.com/
01:00:30 (sysadmins/config: line 2395) ok https://www.w3.org/TR/referrer-policy/#referrer-policies
01:00:30 (developers/GettingStarted/AdvancedClientDevelopment: line 19) ok https://www.scons.org
01:00:31 (sysadmins/version-requirements: line 260) redirect https://yum.postgresql.org/16/redhat/rhel-9-x86_64/ - permanently to https://download.postgresql.org/pub/repos/yum/16/redhat/rhel-9-x86_64/
01:00:31 (sysadmins/version-requirements: line 254) redirect https://yum.postgresql.org/14/redhat/rhel-9-x86_64/ - permanently to https://download.postgresql.org/pub/repos/yum/14/redhat/rhel-9-x86_64/
01:00:31 (sysadmins/version-requirements: line 257) redirect https://yum.postgresql.org/15/redhat/rhel-9-x86_64/ - permanently to https://download.postgresql.org/pub/repos/yum/15/redhat/rhel-9-x86_64/
01:00:31 ( developers/Cpp: line 4) ok https://zeroc.com
01:00:31 (developers/Python: line 7) ok https://zeroc.com/ice/downloads/3.6
01:00:31 (sysadmins/unix/server-installation: line 190) redirect https://zeroc.com/downloads/ice - temporarily to https://zeroc.com/ice/downloads/3.7
01:00:32 ( developers/Web: line 29) redirect https://zeroc.com/products/ice - permanently to https://zeroc.com/ice
01:00:39 (developers/Server: line 32) redirect https://www.oracle.com/technetwork/java/javaee/ejb/index.html - permanently to https://www.oracle.com/java/technologies/enterprise-javabeans-technology.html
01:00:39 Adding redirects:
01:00:39 build succeeded.
01:00:39
01:00:39 Look for any errors in the above output or in _build/linkcheck/output.txt
01:00:40
01:00:40 Link check complete; look for any errors in the above output or in _build/linkcheck/output.txt.
01:00:40 Archiving artifacts
01:00:41 Finished: SUCCESS
![[Jenkins]](/jenkins/static/03a0bb70/images/svgs/logo.svg){kind=logo}
