14:27:23 Started by upstream project "Trigger" build number 17 14:27:23 originally caused by: 14:27:23 Started by user devspace 14:27:23 Restarted from build #16, stage OMERO Jars 14:27:23 Running as SYSTEM 14:27:23 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-docs 14:27:23 The recommended git tool is: NONE 14:27:23 No credentials specified 14:27:23 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-docs/.git # timeout=10 14:27:23 Fetching changes from the remote Git repository 14:27:23 > git config remote.origin.url https://github.com/ome/ome-documentation # timeout=10 14:27:23 Fetching upstream changes from https://github.com/ome/ome-documentation 14:27:23 > git --version # timeout=10 14:27:23 > git --version # 'git version 2.39.3' 14:27:23 > git fetch --tags --force --progress -- https://github.com/ome/ome-documentation +refs/heads/*:refs/remotes/origin/* # timeout=10 14:27:23 > git rev-parse origin/develop^{commit} # timeout=10 14:27:23 Checking out Revision f82e0d96fed7c370ffabd5d02cace3e6080af4d8 (origin/develop) 14:27:23 > git config core.sparsecheckout # timeout=10 14:27:23 > git checkout -f f82e0d96fed7c370ffabd5d02cace3e6080af4d8 # timeout=10 14:27:23 Commit message: "Merge pull request #2403 from ome/create-pull-request/patch" 14:27:23 > git rev-list --no-walk 21c39950a0f19fb780a543aac660ef9fce2d0a86 # timeout=10 14:27:23 Cleaning workspace 14:27:23 > git rev-parse --verify HEAD # timeout=10 14:27:23 Resetting working tree 14:27:23 > git reset --hard # timeout=10 14:27:23 > git clean -fdx # timeout=10 14:27:24 [OMERO-docs] $ /bin/bash -xe /tmp/jenkins1802674963233718698.sh 14:27:24 + python3 -mvenv venv 14:27:26 + source /home/omero/workspace/OMERO-docs/venv/bin/activate 14:27:26 ++ deactivate nondestructive 14:27:26 ++ '[' -n '' ']' 14:27:26 ++ '[' -n '' ']' 14:27:26 ++ '[' -n /bin/bash -o -n '' ']' 14:27:26 ++ hash -r 14:27:26 ++ '[' -n '' ']' 14:27:26 ++ unset VIRTUAL_ENV 14:27:26 ++ '[' '!' nondestructive = nondestructive ']' 14:27:26 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-docs/venv 14:27:26 ++ export VIRTUAL_ENV 14:27:26 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 14:27:26 ++ PATH=/home/omero/workspace/OMERO-docs/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 14:27:26 ++ export PATH 14:27:26 ++ '[' -n '' ']' 14:27:26 ++ '[' -z '' ']' 14:27:26 ++ _OLD_VIRTUAL_PS1= 14:27:26 ++ PS1='(venv) ' 14:27:26 ++ export PS1 14:27:26 ++ '[' -n /bin/bash -o -n '' ']' 14:27:26 ++ hash -r 14:27:26 + pip install -U pip 14:27:27 Requirement already satisfied: pip in ./venv/lib/python3.9/site-packages (21.2.3) 14:27:27 Collecting pip 14:27:27 Using cached pip-24.0-py3-none-any.whl (2.1 MB) 14:27:27 Installing collected packages: pip 14:27:27 Attempting uninstall: pip 14:27:27 Found existing installation: pip 21.2.3 14:27:27 Uninstalling pip-21.2.3: 14:27:27 Successfully uninstalled pip-21.2.3 14:27:28 Successfully installed pip-24.0 14:27:28 + pip install -U scc 14:27:29 Collecting scc 14:27:29 Using cached scc-0.19.1-py3-none-any.whl.metadata (3.6 kB) 14:27:29 Collecting PyGithub>=1.54 (from scc) 14:27:29 Using cached PyGithub-2.3.0-py3-none-any.whl.metadata (3.8 kB) 14:27:29 Collecting PyYAML>=5.1 (from scc) 14:27:29 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) 14:27:29 Collecting future (from scc) 14:27:29 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) 14:27:29 Collecting ruamel.yaml (from scc) 14:27:29 Using cached ruamel.yaml-0.18.6-py3-none-any.whl.metadata (23 kB) 14:27:29 Collecting ruamel.yaml.jinja2 (from scc) 14:27:29 Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB) 14:27:29 Collecting six (from scc) 14:27:29 Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB) 14:27:29 Collecting urllib3<2 (from scc) 14:27:29 Using cached urllib3-1.26.18-py2.py3-none-any.whl.metadata (48 kB) 14:27:29 Collecting yaclifw<0.3,>=0.2.0 (from scc) 14:27:29 Using cached yaclifw-0.2.0-py3-none-any.whl 14:27:29 Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc) 14:27:29 Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl.metadata (8.6 kB) 14:27:30 Collecting requests>=2.14.0 (from PyGithub>=1.54->scc) 14:27:30 Using cached requests-2.31.0-py3-none-any.whl.metadata (4.6 kB) 14:27:30 Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) 14:27:30 Using cached PyJWT-2.8.0-py3-none-any.whl.metadata (4.2 kB) 14:27:30 Collecting typing-extensions>=4.0.0 (from PyGithub>=1.54->scc) 14:27:30 Using cached typing_extensions-4.10.0-py3-none-any.whl.metadata (3.0 kB) 14:27:30 Collecting Deprecated (from PyGithub>=1.54->scc) 14:27:30 Using cached Deprecated-1.2.14-py2.py3-none-any.whl.metadata (5.4 kB) 14:27:30 Collecting ruamel.yaml.clib>=0.2.7 (from ruamel.yaml->scc) 14:27:30 Using cached ruamel.yaml.clib-0.2.8-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl.metadata (2.2 kB) 14:27:30 Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) 14:27:30 Using cached cryptography-42.0.5-cp39-abi3-manylinux_2_28_x86_64.whl.metadata (5.3 kB) 14:27:30 Collecting cffi>=1.4.1 (from pynacl>=1.4.0->PyGithub>=1.54->scc) 14:27:30 Using cached cffi-1.16.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (1.5 kB) 14:27:30 Collecting charset-normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc) 14:27:30 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB) 14:27:30 Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc) 14:27:30 Using cached idna-3.6-py3-none-any.whl.metadata (9.9 kB) 14:27:30 Collecting certifi>=2017.4.17 (from requests>=2.14.0->PyGithub>=1.54->scc) 14:27:30 Using cached certifi-2024.2.2-py3-none-any.whl.metadata (2.2 kB) 14:27:31 Collecting wrapt<2,>=1.10 (from Deprecated->PyGithub>=1.54->scc) 14:27:31 Using cached wrapt-1.16.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB) 14:27:31 Collecting pycparser (from cffi>=1.4.1->pynacl>=1.4.0->PyGithub>=1.54->scc) 14:27:31 Using cached pycparser-2.21-py2.py3-none-any.whl.metadata (1.1 kB) 14:27:31 Using cached scc-0.19.1-py3-none-any.whl (48 kB) 14:27:31 Using cached PyGithub-2.3.0-py3-none-any.whl (354 kB) 14:27:31 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB) 14:27:31 Using cached urllib3-1.26.18-py2.py3-none-any.whl (143 kB) 14:27:31 Using cached future-1.0.0-py3-none-any.whl (491 kB) 14:27:31 Using cached ruamel.yaml-0.18.6-py3-none-any.whl (117 kB) 14:27:31 Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB) 14:27:31 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB) 14:27:31 Using cached PyJWT-2.8.0-py3-none-any.whl (22 kB) 14:27:31 Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (856 kB) 14:27:31 Using cached requests-2.31.0-py3-none-any.whl (62 kB) 14:27:31 Using cached ruamel.yaml.clib-0.2.8-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl (562 kB) 14:27:31 Using cached typing_extensions-4.10.0-py3-none-any.whl (33 kB) 14:27:31 Using cached Deprecated-1.2.14-py2.py3-none-any.whl (9.6 kB) 14:27:31 Using cached certifi-2024.2.2-py3-none-any.whl (163 kB) 14:27:31 Using cached cffi-1.16.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (443 kB) 14:27:31 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB) 14:27:31 Using cached cryptography-42.0.5-cp39-abi3-manylinux_2_28_x86_64.whl (4.6 MB) 14:27:31 Using cached idna-3.6-py3-none-any.whl (61 kB) 14:27:31 Using cached wrapt-1.16.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (80 kB) 14:27:31 Using cached pycparser-2.21-py2.py3-none-any.whl (118 kB) 14:27:31 Installing collected packages: wrapt, urllib3, typing-extensions, six, ruamel.yaml.clib, PyYAML, pyjwt, pycparser, idna, future, charset-normalizer, certifi, yaclifw, ruamel.yaml, requests, Deprecated, cffi, ruamel.yaml.jinja2, pynacl, cryptography, PyGithub, scc 14:27:33 Successfully installed Deprecated-1.2.14 PyGithub-2.3.0 PyYAML-6.0.1 certifi-2024.2.2 cffi-1.16.0 charset-normalizer-3.3.2 cryptography-42.0.5 future-1.0.0 idna-3.6 pycparser-2.21 pyjwt-2.8.0 pynacl-1.5.0 requests-2.31.0 ruamel.yaml-0.18.6 ruamel.yaml.clib-0.2.8 ruamel.yaml.jinja2-0.2.7 scc-0.19.1 six-1.16.0 typing-extensions-4.10.0 urllib3-1.26.18 wrapt-1.16.0 yaclifw-0.2.0 14:27:33 + test -e src 14:27:33 + scc merge develop --no-ask --reset --comment -S success-only --push merge_ci 14:27:35 Following Github server redirection from /repos/ome/ome-documentation to /repositories/3198415 14:27:35 2024-03-27 14:27:35,041 [github.Reque] INFO Following Github server redirection from /repos/ome/ome-documentation to /repositories/3198415 14:27:37 2024-03-27 14:27:37,190 [ scc.merge] INFO Merging Pull Request(s) based on develop 14:27:37 2024-03-27 14:27:37,191 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 14:27:37 2024-03-27 14:27:37,191 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 14:27:37 2024-03-27 14:27:37,191 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 14:27:37 2024-03-27 14:27:37,191 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 14:27:37 2024-03-27 14:27:37,191 [ scc.merge] INFO Excluding Pull Request(s) without successful status 14:27:52 2024-03-27 14:27:52,323 [ scc.merge] INFO Repository: ome/ome-documentation 14:27:52 2024-03-27 14:27:52,323 [ scc.merge] INFO Excluded PRs: 14:27:52 2024-03-27 14:27:52,323 [ scc.merge] INFO - PR 2393 bernt-matthias 'fix option capitalization' (user: bernt-matthias) 14:27:52 2024-03-27 14:27:52,323 [ scc.merge] INFO - PR 2357 fmeyenhofer 'Add a OMERO.table visualisation example' (user: fmeyenhofer) 14:27:52 2024-03-27 14:27:52,323 [ scc.merge] INFO - PR 2347 jburel 'pin version to match rtd ones' (exclude comment) 14:27:52 2024-03-27 14:27:52,323 [ scc.merge] INFO - PR 2298 pwalczysko 'test' (exclude comment) 14:27:52 2024-03-27 14:27:52,323 [ scc.merge] INFO Already up to date. 14:27:52 2024-03-27 14:27:52,323 [ scc.merge] INFO 14:27:52 2024-03-27 14:27:52,323 [ scc.merge] INFO Merged PRs: 14:27:52 2024-03-27 14:27:52,323 [ scc.merge] INFO - PR 2291 pwalczysko 'Add ansible and docker install doc - former "install.rst"' 14:27:52 2024-03-27 14:27:52,323 [ scc.merge] INFO - PR 2353 jburel 'Mencoder' 14:27:52 2024-03-27 14:27:52,323 [ scc.merge] INFO - PR 2355 will-moore 'Update python Tables code to use 'Image' column' 14:27:52 2024-03-27 14:27:52,323 [ scc.merge] INFO 14:27:55 2024-03-27 14:27:55,109 [ scc.merge] INFO Merged branch pushed to https://github.com/snoopycrimecop/ome-documentation/tree/merge_ci 14:27:55 [OMERO-docs] $ /bin/bash -xe /tmp/jenkins18383027552782325945.sh 14:27:55 + source /home/omero/workspace/OMERO-docs/venv/bin/activate 14:27:55 ++ deactivate nondestructive 14:27:55 ++ '[' -n '' ']' 14:27:55 ++ '[' -n '' ']' 14:27:55 ++ '[' -n /bin/bash -o -n '' ']' 14:27:55 ++ hash -r 14:27:55 ++ '[' -n '' ']' 14:27:55 ++ unset VIRTUAL_ENV 14:27:55 ++ '[' '!' nondestructive = nondestructive ']' 14:27:55 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-docs/venv 14:27:55 ++ export VIRTUAL_ENV 14:27:55 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 14:27:55 ++ PATH=/home/omero/workspace/OMERO-docs/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 14:27:55 ++ export PATH 14:27:55 ++ '[' -n '' ']' 14:27:55 ++ '[' -z '' ']' 14:27:55 ++ _OLD_VIRTUAL_PS1= 14:27:55 ++ PS1='(venv) ' 14:27:55 ++ export PS1 14:27:55 ++ '[' -n /bin/bash -o -n '' ']' 14:27:55 ++ hash -r 14:27:55 + pip install -r requirements.txt 14:27:55 Collecting Sphinx (from -r requirements.txt (line 1)) 14:27:55 Using cached sphinx-7.2.6-py3-none-any.whl.metadata (5.9 kB) 14:27:55 Collecting sphinx-rtd-theme (from -r requirements.txt (line 2)) 14:27:55 Using cached sphinx_rtd_theme-2.0.0-py2.py3-none-any.whl.metadata (4.4 kB) 14:27:55 Collecting sphinxcontrib-applehelp (from Sphinx->-r requirements.txt (line 1)) 14:27:55 Using cached sphinxcontrib_applehelp-1.0.8-py3-none-any.whl.metadata (2.3 kB) 14:27:55 Collecting sphinxcontrib-devhelp (from Sphinx->-r requirements.txt (line 1)) 14:27:55 Using cached sphinxcontrib_devhelp-1.0.6-py3-none-any.whl.metadata (2.3 kB) 14:27:55 Collecting sphinxcontrib-jsmath (from Sphinx->-r requirements.txt (line 1)) 14:27:55 Using cached sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl.metadata (1.4 kB) 14:27:55 Collecting sphinxcontrib-htmlhelp>=2.0.0 (from Sphinx->-r requirements.txt (line 1)) 14:27:55 Using cached sphinxcontrib_htmlhelp-2.0.5-py3-none-any.whl.metadata (2.3 kB) 14:27:55 Collecting sphinxcontrib-serializinghtml>=1.1.9 (from Sphinx->-r requirements.txt (line 1)) 14:27:55 Using cached sphinxcontrib_serializinghtml-1.1.10-py3-none-any.whl.metadata (2.4 kB) 14:27:55 Collecting sphinxcontrib-qthelp (from Sphinx->-r requirements.txt (line 1)) 14:27:55 Using cached sphinxcontrib_qthelp-1.0.7-py3-none-any.whl.metadata (2.2 kB) 14:27:55 Collecting Jinja2>=3.0 (from Sphinx->-r requirements.txt (line 1)) 14:27:55 Using cached Jinja2-3.1.3-py3-none-any.whl.metadata (3.3 kB) 14:27:56 Collecting Pygments>=2.14 (from Sphinx->-r requirements.txt (line 1)) 14:27:56 Using cached pygments-2.17.2-py3-none-any.whl.metadata (2.6 kB) 14:27:56 Collecting docutils<0.21,>=0.18.1 (from Sphinx->-r requirements.txt (line 1)) 14:27:56 Using cached docutils-0.20.1-py3-none-any.whl.metadata (2.8 kB) 14:27:56 Collecting snowballstemmer>=2.0 (from Sphinx->-r requirements.txt (line 1)) 14:27:56 Using cached snowballstemmer-2.2.0-py2.py3-none-any.whl.metadata (6.5 kB) 14:27:56 Collecting babel>=2.9 (from Sphinx->-r requirements.txt (line 1)) 14:27:56 Using cached Babel-2.14.0-py3-none-any.whl.metadata (1.6 kB) 14:27:56 Collecting alabaster<0.8,>=0.7 (from Sphinx->-r requirements.txt (line 1)) 14:27:56 Using cached alabaster-0.7.16-py3-none-any.whl.metadata (2.9 kB) 14:27:56 Collecting imagesize>=1.3 (from Sphinx->-r requirements.txt (line 1)) 14:27:56 Using cached imagesize-1.4.1-py2.py3-none-any.whl.metadata (1.5 kB) 14:27:56 Requirement already satisfied: requests>=2.25.0 in ./venv/lib/python3.9/site-packages (from Sphinx->-r requirements.txt (line 1)) (2.31.0) 14:27:56 Collecting packaging>=21.0 (from Sphinx->-r requirements.txt (line 1)) 14:27:56 Using cached packaging-24.0-py3-none-any.whl.metadata (3.2 kB) 14:27:56 Collecting importlib-metadata>=4.8 (from Sphinx->-r requirements.txt (line 1)) 14:27:56 Using cached importlib_metadata-7.1.0-py3-none-any.whl.metadata (4.7 kB) 14:27:56 Collecting sphinxcontrib-jquery<5,>=4 (from sphinx-rtd-theme->-r requirements.txt (line 2)) 14:27:56 Using cached sphinxcontrib_jquery-4.1-py2.py3-none-any.whl.metadata (2.6 kB) 14:27:56 Collecting zipp>=0.5 (from importlib-metadata>=4.8->Sphinx->-r requirements.txt (line 1)) 14:27:56 Using cached zipp-3.18.1-py3-none-any.whl.metadata (3.5 kB) 14:27:56 Collecting MarkupSafe>=2.0 (from Jinja2>=3.0->Sphinx->-r requirements.txt (line 1)) 14:27:56 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB) 14:27:56 Requirement already satisfied: charset-normalizer<4,>=2 in ./venv/lib/python3.9/site-packages (from requests>=2.25.0->Sphinx->-r requirements.txt (line 1)) (3.3.2) 14:27:56 Requirement already satisfied: idna<4,>=2.5 in ./venv/lib/python3.9/site-packages (from requests>=2.25.0->Sphinx->-r requirements.txt (line 1)) (3.6) 14:27:56 Requirement already satisfied: urllib3<3,>=1.21.1 in ./venv/lib/python3.9/site-packages (from requests>=2.25.0->Sphinx->-r requirements.txt (line 1)) (1.26.18) 14:27:56 Requirement already satisfied: certifi>=2017.4.17 in ./venv/lib/python3.9/site-packages (from requests>=2.25.0->Sphinx->-r requirements.txt (line 1)) (2024.2.2) 14:27:56 Using cached sphinx-7.2.6-py3-none-any.whl (3.2 MB) 14:27:56 Using cached sphinx_rtd_theme-2.0.0-py2.py3-none-any.whl (2.8 MB) 14:27:56 Using cached alabaster-0.7.16-py3-none-any.whl (13 kB) 14:27:56 Using cached Babel-2.14.0-py3-none-any.whl (11.0 MB) 14:27:56 Using cached docutils-0.20.1-py3-none-any.whl (572 kB) 14:27:56 Using cached imagesize-1.4.1-py2.py3-none-any.whl (8.8 kB) 14:27:56 Using cached importlib_metadata-7.1.0-py3-none-any.whl (24 kB) 14:27:56 Using cached Jinja2-3.1.3-py3-none-any.whl (133 kB) 14:27:56 Using cached packaging-24.0-py3-none-any.whl (53 kB) 14:27:56 Using cached pygments-2.17.2-py3-none-any.whl (1.2 MB) 14:27:56 Using cached snowballstemmer-2.2.0-py2.py3-none-any.whl (93 kB) 14:27:56 Using cached sphinxcontrib_htmlhelp-2.0.5-py3-none-any.whl (99 kB) 14:27:56 Using cached sphinxcontrib_jquery-4.1-py2.py3-none-any.whl (121 kB) 14:27:56 Using cached sphinxcontrib_serializinghtml-1.1.10-py3-none-any.whl (92 kB) 14:27:56 Using cached sphinxcontrib_applehelp-1.0.8-py3-none-any.whl (120 kB) 14:27:56 Using cached sphinxcontrib_devhelp-1.0.6-py3-none-any.whl (83 kB) 14:27:56 Using cached sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl (5.1 kB) 14:27:56 Using cached sphinxcontrib_qthelp-1.0.7-py3-none-any.whl (89 kB) 14:27:56 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB) 14:27:56 Using cached zipp-3.18.1-py3-none-any.whl (8.2 kB) 14:27:57 Installing collected packages: snowballstemmer, zipp, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, Pygments, packaging, MarkupSafe, imagesize, docutils, babel, alabaster, Jinja2, importlib-metadata, Sphinx, sphinxcontrib-jquery, sphinx-rtd-theme 14:27:59 Successfully installed Jinja2-3.1.3 MarkupSafe-2.1.5 Pygments-2.17.2 Sphinx-7.2.6 alabaster-0.7.16 babel-2.14.0 docutils-0.20.1 imagesize-1.4.1 importlib-metadata-7.1.0 packaging-24.0 snowballstemmer-2.2.0 sphinx-rtd-theme-2.0.0 sphinxcontrib-applehelp-1.0.8 sphinxcontrib-devhelp-1.0.6 sphinxcontrib-htmlhelp-2.0.5 sphinxcontrib-jquery-4.1 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-1.0.7 sphinxcontrib-serializinghtml-1.1.10 zipp-3.18.1 14:27:59 + cd omero 14:27:59 + make clean html linkcheck 14:27:59 rm -rf _build/* 14:27:59 sphinx-build -b html -d _build/doctrees . _build/html 14:28:00 Running Sphinx v7.2.6 14:28:00 making output directory... done 14:28:00 building [mo]: targets for 0 po files that are out of date 14:28:00 writing output... 14:28:00 building [html]: targets for 163 source files that are out of date 14:28:00 updating environment: [new config] 163 added, 0 changed, 0 removed 14:28:00 reading sources... 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Use "pathlib.Path" or "os.fspath" instead. 14:28:26 src_path = app.srcdir + '/' + html_src_path 14:28:26 Adding redirects: 14:28:26 sysadmins/unix/install-web/walkthrough/omeroweb-install-ubuntu1804-ice3.6.html 14:28:26 sysadmins/unix/server-ubuntu1804-ice36.html 14:28:26 sysadmins/unix/install-web/walkthrough/omeroweb-install-debian9-ice3.6.html 14:28:26 sysadmins/unix/server-debian9-ice36.html 14:28:26 sysadmins/unix/install-web/walkthrough/omeroweb-install-centos8-ice3.6.html 14:28:26 sysadmins/unix/server-centos8-ice36.html 14:28:26 sysadmins/server-overview.html 14:28:26 sysadmins/server-tables.html 14:28:26 sysadmins/omero-home-prefix.html 14:28:26 developers/Insight/Architecture.html 14:28:26 developers/Insight/Configuration.html 14:28:26 developers/Insight/DirectoryContents.html 14:28:26 developers/Insight/EventBus.html 14:28:26 developers/Insight/HowTo/BuildAgent.html 14:28:26 developers/Insight/HowTo/BuildAgentView.html 14:28:26 developers/Insight/HowTo/RetrieveData.html 14:28:26 developers/Insight/ImplementationView.html 14:28:26 developers/Insight/TaskBar.html 14:28:26 build succeeded. 14:28:26 14:28:26 The HTML pages are in _build/html. 14:28:26 14:28:26 Build finished. 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https://ccache.dev/ 14:28:30 (developers/GettingStarted: line 232) ok https://docs.jboss.org/hibernate/orm/3.6/reference/en-US/html/queryhql.html 14:28:30 (developers/Clients/ImportLibrary: line 48) redirect https://docs.openmicroscopy.org/bio-formats/7.1.0/formats/aperio-svs-tiff.html - with Found to https://bio-formats.readthedocs.io/en/v7.1.0/formats/aperio-svs-tiff.html 14:28:30 (developers/analysis: line 53) redirect http://cvs.openmicroscopy.org.uk/snapshots/movies/omero-4-1/mov/FlexPreview4.1-configuration.mov - permanently to https://downloads.openmicroscopy.org/movies/omero-4-1/mov/FlexPreview4.1-configuration.mov 14:28:30 (developers/Server/ExtendingOmero: line 387) redirect http://lists.openmicroscopy.org.uk/pipermail/ome-devel/2009-July/001332.html - permanently to https://lists.openmicroscopy.org.uk/pipermail/ome-devel/2009-July/001332.html 14:28:30 (users/community-resources: line 23) redirect http://lists.openmicroscopy.org.uk/pipermail/ome-devel/ - permanently to 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https://docs.openmicroscopy.org/omero-blitz/5.7.2/javadoc/ome/services/blitz/repo/RepositoryDaoImpl.html 14:28:49 (developers/Server/GraphsImpl: line 70) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/javadoc/omero/cmd/graphs/BaseGraphPolicyAdjuster.html 14:28:49 (developers/Server/GraphsImpl: line 48) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/javadoc/omero/cmd/graphs/BaseGraphTraversalProcessor.html 14:28:49 (sysadmins/server-upgrade: line 17) redirect https://docs.openmicroscopy.org/latest/omero5.5/sysadmins/server-upgrade.html - permanently to https://docs.openmicroscopy.org/omero/5.5.1/sysadmins/server-upgrade.html 14:28:49 (developers/Server/GraphsImpl: line 100) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/javadoc/omero/cmd/graphs/GraphRequestFactory.html 14:28:49 (developers/Server/GraphsImpl: line 77) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/javadoc/omero/cmd/graphs/ChildOptionsPolicy.html 14:28:49 (developers/Server/GraphsImpl: line 100) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/javadoc/omero/cmd/graphs/GraphHelper.html 14:28:49 (developers/Server/GraphsImpl: line 100) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/javadoc/omero/cmd/graphs/GraphUtil.html 14:28:49 (developers/Server/GraphsImpl: line 86) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/javadoc/omero/cmd/graphs/SkipTailPolicy.html 14:28:49 (developers/Server/GraphsImpl: line 48) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/javadoc/omero/cmd/graphs/NullGraphTraversalProcessor.html 14:28:49 (developers/Server/GraphsImpl: line 83) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/javadoc/omero/cmd/graphs/SkipHeadPolicy.html 14:28:49 (developers/Model/Units: line 16) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/javadoc/omero/model/ElectricPotentialI.html 14:28:49 (sysadmins/config: line 1609) redirect https://docs.openmicroscopy.org/latest/omero/sysadmins/customization.html#download-restrictions - with Found to https://omero.readthedocs.io/en/stable/sysadmins/customization.html 14:28:49 (developers/Model/Units: line 17) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/javadoc/omero/model/FrequencyI.html 14:28:49 (developers/Model/Units: line 19) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/javadoc/omero/model/PowerI.html 14:28:49 (developers/Model/Units: line 18) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/javadoc/omero/model/LengthI.html 14:28:49 (developers/Model/Units: line 20) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/javadoc/omero/model/PressureI.html 14:28:49 (developers/Model/Units: line 21) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/javadoc/omero/model/TemperatureI.html 14:28:49 ( index: line 35) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/ 14:28:49 (developers/Model/Units: line 22) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/javadoc/omero/model/TimeI.html 14:28:49 (developers/Modules/Api: line 126) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/api.html 14:28:49 (developers/Modules/Api: line 45) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/api/IAdmin.html 14:28:50 (developers/Modules/Api: line 50) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/api/IConfig.html 14:28:50 (developers/Modules/Api: line 57) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/api/ILdap.html 14:28:50 (developers/Modules/Api: line 54) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/api/IContainer.html 14:28:50 (developers/Modules/Api: line 61) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/api/IMetadata.html 14:28:50 (developers/Modules/Api: line 64) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/api/IPixels.html 14:28:50 (developers/Modules/Api: line 67) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/api/IProjection.html 14:28:50 (developers/Modules/Api: line 70) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/api/IQuery.html 14:28:50 (developers/GettingStarted/AdvancedClientDevelopment: line 477) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/api/IQuery.html#projection 14:28:50 (developers/Modules/Api: line 74) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/api/IRenderingSettings.html 14:28:50 (developers/Modules/Api: line 77) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/api/IRepositoryInfo.html 14:28:50 (developers/Modules/Api: line 83) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/api/IScript.html 14:28:50 (developers/Modules/Api: line 80) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/api/IRoi.html 14:28:50 (developers/Modules/Api: line 91) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/api/ITimeline.html 14:28:50 (developers/Modules/Api: line 89) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/api/IShare.html 14:28:50 (developers/Modules/Api: line 86) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/api/ISession.html 14:28:50 (developers/Modules/Api: line 94) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/api/ITypes.html 14:28:50 (developers/Modules/Api: line 97) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/api/IUpdate.html 14:28:50 (developers/Modules/Api: line 111) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/api/RawFileStore.html 14:28:50 (developers/Modules/Api: line 117) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/api/RenderingEngine.html 14:28:50 (developers/Modules/Api: line 16) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/api/ServiceFactory.html 14:28:50 (developers/Modules/Api: line 114) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/api/RawPixelsStore.html 14:28:50 (developers/PythonBlitzGateway: line 111) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/api/ServiceFactory.html#createRenderingEngine 14:28:50 (developers/PythonBlitzGateway: line 111) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/api/ServiceFactory.html#getQueryService 14:28:51 (developers/Server/GraphRequests: line 75) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/cmd/Chgrp2.html 14:28:51 (developers/Modules/Api: line 121) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/api/ThumbnailStore.html 14:28:51 (developers/Server/GraphRequests: line 83) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/cmd/Chmod2.html 14:28:51 (developers/Server/GraphRequests: line 79) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/cmd/Chown2.html 14:28:51 (developers/Server/GraphRequests: line 88) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/cmd/Delete2.html 14:28:51 (developers/Server/GraphRequests: line 27) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/cmd/DiskUsage2.html 14:28:51 (developers/Server/GraphRequests: line 96) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/cmd/Duplicate.html 14:28:51 (developers/Server/GraphRequests: line 42) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/cmd/FindChildren.html 14:28:51 (developers/Server/GraphRequests: line 59) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/cmd/GraphModify2.html 14:28:51 (developers/Server/GraphRequests: line 34) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/cmd/FindParents.html 14:28:51 (developers/Server/GraphRequests: line 6) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/cmd/GraphQuery.html 14:28:51 (developers/Server/GraphRequests: line 18) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/cmd/LegalGraphTargets.html 14:28:51 (developers/Server/GraphRequests: line 104) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/cmd/SkipHead.html 14:28:51 (developers/Server/GraphRequests: line 71) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/cmd/graphs/ChildOption.html 14:28:51 (developers/Tables: line 289) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/grid/Table.html 14:28:51 (developers/GettingStarted: line 136) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/model.html 14:28:51 (developers/Server/LightAdmins: line 22) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/model/AdminPrivilege.html 14:28:51 (developers/GettingStarted: line 161) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/model/Annotation.html 14:28:51 (developers/GettingStarted: line 179) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/model/Channel.html 14:28:51 (developers/GettingStarted: line 161) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/model/CommentAnnotation.html 14:28:51 (developers/GettingStarted: line 150) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/model/Dataset.html 14:28:51 (developers/GettingStarted: line 161) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/model/DatasetAnnotationLink.html 14:28:51 (developers/GettingStarted: line 161) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/model/FileAnnotation.html 14:28:51 (developers/GettingStarted: line 150) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/model/DatasetImageLink.html 14:28:52 (developers/GettingStarted: line 150) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/model/Image.html 14:28:52 (developers/Server/Permissions: line 380) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/model/Permissions.html#canAnnotate 14:28:52 (developers/Server/Permissions: line 381) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/model/Permissions.html#canChgrp 14:28:52 (developers/Server/Permissions: line 382) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/model/Permissions.html#canChown 14:28:52 (developers/Server/Permissions: line 383) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/model/Permissions.html#canDelete 14:28:52 (developers/Server/Permissions: line 384) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/model/Permissions.html#canEdit 14:28:52 (developers/Server/Permissions: line 385) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/model/Permissions.html#canLink 14:28:52 (developers/GettingStarted: line 150) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/model/Project.html 14:28:52 (developers/GettingStarted: line 179) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/model/Pixels.html 14:28:52 (developers/GettingStarted: line 161) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/model/ProjectAnnotationLink.html 14:28:52 ( developers/Java: line 52) ok https://docs.openmicroscopy.org/omero-gateway/5.9.0/javadoc//omero/gateway/facility/package-summary.html 14:28:52 (developers/GettingStarted: line 150) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/model/ProjectDatasetLink.html 14:28:52 (developers/Server/LightAdmins: line 160) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/sys/EventContext.html 14:28:52 ( developers/Java: line 44) ok https://docs.openmicroscopy.org/omero-gateway/5.9.0/javadoc/omero/gateway/Gateway.html 14:28:52 ( developers/Java: line 52) ok https://docs.openmicroscopy.org/omero-gateway/5.9.0/javadoc/omero/gateway/facility/BrowseFacility.html 14:28:52 (developers/Model/EveryObject: line 24) ok https://docs.openmicroscopy.org/omero-model/5.6.13/javadoc/ome/model/IEnum.html 14:28:52 ( developers/Java: line 57) ok https://docs.openmicroscopy.org/omero-gateway/5.9.0/javadoc/omero/gateway/model/DataObject.html 14:28:52 (developers/Model/EveryObject: line 92) ok https://docs.openmicroscopy.org/omero-model/5.6.13/javadoc/ome/model/ILink.html 14:28:52 (developers/Model/EveryObject: line 425) ok https://docs.openmicroscopy.org/omero-model/5.6.13/javadoc/ome/model/units/ElectricPotential.html 14:28:52 (developers/Model/EveryObject: line 54) ok https://docs.openmicroscopy.org/omero-model/5.6.13/javadoc/ome/model/IMutable.html 14:28:52 (developers/Model/EveryObject: line 467) ok https://docs.openmicroscopy.org/omero-model/5.6.13/javadoc/ome/model/units/Frequency.html 14:28:52 (developers/Model/EveryObject: line 580) ok https://docs.openmicroscopy.org/omero-model/5.6.13/javadoc/ome/model/units/Length.html 14:28:52 (developers/Model/EveryObject: line 114) ok https://docs.openmicroscopy.org/omero-model/5.6.13/javadoc/ome/model/units/Power.html 14:28:52 (developers/Model/EveryObject: line 1190) ok https://docs.openmicroscopy.org/omero-model/5.6.13/javadoc/ome/model/units/Pressure.html 14:28:52 (developers/Model/EveryObject: line 1190) ok https://docs.openmicroscopy.org/omero-model/5.6.13/javadoc/ome/model/units/Temperature.html 14:28:52 (developers/Model/EveryObject: line 2238) ok https://docs.openmicroscopy.org/omero-model/5.6.13/javadoc/ome/model/units/Time.html 14:28:53 (developers/Server/LightAdmins: line 219) ok https://docs.openmicroscopy.org/omero-server/5.6.10/javadoc/ome/security/basic/BasicACLVoter.html 14:28:53 (developers/Server/LightAdmins: line 219) ok https://docs.openmicroscopy.org/omero-server/5.6.10/javadoc/ome/logic/AdminImpl.html 14:28:53 (developers/Server/LightAdmins: line 242) ok https://docs.openmicroscopy.org/omero-server/5.6.10/javadoc/ome/security/basic/LightAdminPrivilegesCleanup.html 14:28:53 (developers/Server/LightAdmins: line 102) ok https://docs.openmicroscopy.org/omero-server/5.6.10/javadoc/ome/security/basic/LightAdminPrivilegesSecurityFilter.html 14:28:53 (developers/Server/LightAdmins: line 219) ok https://docs.openmicroscopy.org/omero-server/5.6.10/javadoc/ome/security/basic/OmeroInterceptor.html 14:28:53 (developers/Server/GraphsImpl: line 11) ok https://docs.openmicroscopy.org/omero-server/5.6.10/javadoc/ome/services/graphs/GraphPathReport.html 14:28:53 (developers/Server/GraphsImpl: line 11) ok https://docs.openmicroscopy.org/omero-server/5.6.10/javadoc/ome/services/graphs/GraphPathBean.html 14:28:53 (developers/Server/GraphsImpl: line 88) ok https://docs.openmicroscopy.org/omero-server/5.6.10/javadoc/ome/services/graphs/GraphPolicyRulePredicate.html 14:28:53 (developers/Server/GraphsImpl: line 60) ok https://docs.openmicroscopy.org/omero-server/5.6.10/javadoc/ome/services/graphs/GraphPolicyRule.html 14:28:53 (developers/Server/GraphsImpl: line 60) ok https://docs.openmicroscopy.org/omero-server/5.6.10/javadoc/ome/services/graphs/GraphPolicy.html 14:28:53 (developers/Server/GraphsImpl: line 32) ok https://docs.openmicroscopy.org/omero-server/5.6.10/javadoc/ome/services/graphs/GraphTraversal.PlanExecutor.html 14:28:53 (developers/Server/GraphsImpl: line 32) ok https://docs.openmicroscopy.org/omero-server/5.6.10/javadoc/ome/services/graphs/GraphTraversal.Processor.html 14:28:53 (developers/Server/GraphsImpl: line 88) ok https://docs.openmicroscopy.org/omero-server/5.6.10/javadoc/ome/services/graphs/GroupPredicate.html 14:28:53 (developers/Server/GraphsImpl: line 22) ok https://docs.openmicroscopy.org/omero-server/5.6.10/javadoc/ome/services/graphs/GraphTraversal.html 14:28:53 (developers/Server/GraphsImpl: line 42) ok https://docs.openmicroscopy.org/omero-server/5.6.10/javadoc/ome/services/graphs/ModelObjectSequencer.html 14:28:53 (developers/Server/GraphsImpl: line 88) ok https://docs.openmicroscopy.org/omero-server/5.6.10/javadoc/ome/services/graphs/PermissionsPredicate.html 14:28:53 (developers/Server/LightAdmins: line 236) ok https://docs.openmicroscopy.org/omero-server/5.6.10/javadoc/ome/services/util/DBUserCheck.html 14:28:53 ( users/history: line 960) ok https://docs.openmicroscopy.org/omero/5.3.0/developers/whatsnew.html 14:28:53 (sysadmins/whatsnew: line 16) redirect https://docs.openmicroscopy.org/omero/5.5/sysadmins/whatsnew.html - permanently to https://docs.openmicroscopy.org/omero/5.5.1/sysadmins/whatsnew.html 14:28:54 (sysadmins/server-ldap: line 318) ok https://docs.oracle.com/javase/jndi/tutorial/ldap/referral/jndi.html 14:28:54 (developers/Modules/Api: line 223) ok https://docs.oracle.com/javase/tutorial/java/annotations/basics.html 14:28:54 (sysadmins/config: line 811) ok https://docs.oracle.com/javase/jndi/tutorial/ldap/connect/create.html 14:28:54 (sysadmins/config: line 924) ok https://docs.oracle.com/javase/tutorial/jndi/newstuff/readtimeout.html 14:28:54 (users/cli/import-target: line 157) ok https://docs.oracle.com/javase/7/docs/api/java/util/regex/Pattern.html 14:28:54 (developers/testing: line 342) ok https://docs.pytest.org/en/latest/how-to/usage.html 14:28:54 (sysadmins/dropbox: line 152) ok https://docs.python.org/2.7/library/site.html 14:28:54 (developers/testing: line 45) ok https://docs.pytest.org/en/latest/ 14:28:54 (sysadmins/config: line 2134) redirect https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples - with Found to https://omero.readthedocs.io/en/stable/sysadmins/grid.html 14:28:54 (sysadmins/python3-migration: line 92) ok https://downloads.openmicroscopy.org 14:28:54 (sysadmins/version-requirements: line 250) ok https://download.postgresql.org/pub/repos/yum/12/redhat/rhel-9-x86_64/ 14:28:54 (sysadmins/UpgradeCheck: line 29) redirect https://downloads.openmicroscopy.org/latest/omero - permanently to https://downloads.openmicroscopy.org/omero/5.6.10/ 14:28:54 (sysadmins/unix/server-install-homebrew: line 204) redirect https://downloads.openmicroscopy.org/latest/omero/artifacts/ - permanently to https://downloads.openmicroscopy.org/omero/5.6.10/artifacts/ 14:28:54 (sysadmins/version-requirements: line 197) ok https://download.rockylinux.org/pub/rocky/9/BaseOS/x86_64/os/Packages/ 14:28:55 (developers/Server/HowToCreateAService: line 101) redirect https://docs.spring.io/spring/docs/2.0.x/reference/beans.html#beans-factory-scopes-singleton - permanently to https://docs.spring.io/spring-framework/docs/2.0.x/reference/beans.html 14:28:55 (developers/GettingStarted: line 56) redirect https://downloads.openmicroscopy.org/latest/omero5.5/ - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/ 14:28:55 (developers/analysis: line 12) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/ - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/api/ 14:28:55 (developers/Server/Aop: line 77) redirect https://docs.spring.io/spring/docs/2.0.x/reference/aop.html - permanently to https://docs.spring.io/spring-framework/docs/2.0.x/reference/aop.html 14:28:55 ( index: line 35) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/ - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/ 14:28:55 (developers/PythonBlitzGateway: line 91) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/omero/omero.gateway.html - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/omero/omero.gateway.html 14:28:55 (developers/GettingStarted/AdvancedClientDevelopment: line 477) ok https://downloads.openmicroscopy.org/presentations/2017/Team-Training/Hibernate/ 14:28:55 (developers/PythonBlitzGateway: line 19) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/omero/omero.gateway.html#omero.gateway._BlitzGateway - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/omero/omero.gateway.html 14:28:55 (developers/PythonBlitzGateway: line 171) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/omero/omero.gateway.html#omero.gateway.ImageWrapper - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/omero/omero.gateway.html 14:28:55 (developers/PythonBlitzGateway: line 123) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/omero/omero.gateway.html#omero.gateway._BlitzGateway._createProxies - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/omero/omero.gateway.html 14:28:55 (developers/Web/WebGateway: line 15) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/omeroweb/omeroweb.webgateway.html#module-omeroweb.webgateway.urls - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/omeroweb/omeroweb.webgateway.html 14:28:55 (sysadmins/ansible-docker: line 29) ok https://downloads.openmicroscopy.org/presentations/2020/Dundee/Workshops/OME2020-OMERO-Installation 14:28:56 (sysadmins/server-ldap: line 322) ok https://en.wikipedia.org/wiki/Active_Directory 14:28:56 (developers/Server/Aop: line 86) ok https://en.wikipedia.org/wiki/Aspect-oriented_programming 14:28:56 (sysadmins/in-place-import: line 288) ok https://en.wikipedia.org/wiki/Hard_link 14:28:56 (developers/GettingStarted/AdvancedClientDevelopment: line 78) ok https://en.wikipedia.org/wiki/Interface_description_language 14:28:56 (developers/Model/Units: line 185) ok https://en.wikipedia.org/wiki/International_System_of_Units 14:28:56 (sysadmins/server-ldap: line 4) ok https://en.wikipedia.org/wiki/Lightweight_Directory_Access_Protocol 14:28:56 (sysadmins/config: line 2764) ok https://en.wikipedia.org/wiki/List_of_tz_database_time_zones 14:28:56 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14:28:59 (sysadmins/server-upgrade: line 74) redirect https://github.com/glencoesoftware/omero-ms-image-region/tree/v0.5.1/src/dist/MemoFileRegenerationReadMe.md - permanently to https://github.com/glencoesoftware/omero-ms-image-region/blob/v0.5.1/src/dist/MemoFileRegenerationReadMe.md 14:28:59 (sysadmins/version-requirements: line 389) ok https://github.com/glencoesoftware/zeroc-ice-rhel9-x86_64 14:28:59 (developers/scripts/index: line 47) ok https://github.com/glencoesoftware/omero-user-scripts 14:28:59 (sysadmins/version-requirements: line 390) ok https://github.com/glencoesoftware/zeroc-ice-ubuntu2204-x86_64 14:28:59 (sysadmins/unix/install-web/walkthrough/omeroweb-install-centos7-ice3.6: line 225) ok https://github.com/jazzband/django-redis 14:28:59 (sysadmins/unix/install-web/walkthrough/omeroweb-install-centos7-ice3.6: line 105) ok https://github.com/jazzband/django-redis/ 14:28:59 (sysadmins/config: line 2236) redirect https://github.com/ottoyiu/django-cors-headers - 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https://logback.qos.ch/ 14:29:02 (sysadmins/unix/install-web/walkthrough/omeroweb-install-centos7-ice3.6: line 203) ok https://nginx.org/en/docs/http/configuring_https_servers.html 14:29:02 (sysadmins/public: line 244) ok https://nginx.org/ 14:29:02 (sysadmins/version-requirements: line 456) ok https://nginx.org/en/download.html 14:29:02 (sysadmins/unix/install-web/walkthrough/omeroweb-install-centos7-ice3.6: line 340) ok https://nginx.org/en/docs/http/ngx_http_proxy_module.html#proxy_buffering 14:29:02 (sysadmins/server-performance: line 201) ok https://metrics.dropwizard.io/ 14:29:02 (sysadmins/limitations: line 106) ok https://ngff.openmicroscopy.org/latest/ 14:29:02 (sysadmins/restricted-admins: line 138) ok https://omero-guides.readthedocs.io/en/latest/download/docs/index.html 14:29:02 ( index: line 29) ok https://omero-guides.readthedocs.io/en/latest/ 14:29:02 (sysadmins/restricted-admins: line 248) ok https://omero-guides.readthedocs.io/en/latest/example.html 14:29:03 ( sysadmins/index: line 5) ok https://omero-guides.readthedocs.io/en/latest/example_facility_manager.html 14:29:03 (sysadmins/server-permissions: line 144) ok https://omero-guides.readthedocs.io/en/latest/introduction/docs/data-management.html 14:29:03 (sysadmins/restricted-admins: line 315) ok https://omero-guides.readthedocs.io/en/latest/introduction/docs/data-management.html#manage-images-in-datasets-projects 14:29:03 (sysadmins/public: line 184) ok https://omero-guides.readthedocs.io/en/latest/figure/docs/index.html 14:29:03 (developers/Web/WebGateway: line 9) ok https://omero-guides.readthedocs.io/en/latest/figure/docs/omero_figure.html 14:29:03 (sysadmins/restricted-admins: line 299) ok https://omero-guides.readthedocs.io/en/latest/introduction/docs/data-management.html#movedowners 14:29:03 (developers/Model/KeyValuePairs: line 87) ok https://omero-guides.readthedocs.io/en/latest/introduction/docs/annotate.html 14:29:03 (sysadmins/server-permissions: line 101) ok 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https://omero.lifesci.dundee.ac.uk/webclient/?show=project-27920 - with Found to https://omero.lifesci.dundee.ac.uk/webclient/login/?url=%2Fwebclient%2F%3Fshow%3Dproject-27920 14:29:03 (sysadmins/public: line 221) redirect https://omero.lifesci.dundee.ac.uk/webclient/?show=project-27936 - with Found to https://omero.lifesci.dundee.ac.uk/webclient/login/?url=%2Fwebclient%2F%3Fshow%3Dproject-27936 14:29:03 (sysadmins/public: line 128) redirect https://omero.lifesci.dundee.ac.uk/pub/schleicher-et-al-2017 - with Found to https://omero.lifesci.dundee.ac.uk/webclient/login/?url=%2Fwebclient%2F%3Fshow%3Dproject-27936 14:29:03 (sysadmins/public: line 214) redirect https://omero.lifesci.dundee.ac.uk/webclient/?show=tag-364188 - with Found to https://omero.lifesci.dundee.ac.uk/webclient/login/?url=%2Fwebclient%2F%3Fshow%3Dtag-364188 14:29:04 (developers/index: line 131) ok https://omero-insight.readthedocs.io/en/latest/ 14:29:04 (developers/Web/CreateApp: line 35) ok 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https://wsgi.readthedocs.org - with Found to https://wsgi.readthedocs.io/en/latest/ 14:29:13 ( developers/Cpp: line 4) redirect https://www.cmake.org/ - permanently to https://cmake.org/ 14:29:14 ( developers/Cpp: line 141) redirect https://www.cmake.org/cmake/help/documentation.html - permanently to https://cmake.org/documentation/ 14:29:14 ( developers/Cpp: line 291) redirect https://www.cmake.org/cmake/help/v3.0/manual/cmake-variables.7.html#variables-that-change-behavior - permanently to https://cmake.org/cmake/help/v3.0/manual/cmake-variables.7.html 14:29:14 ( developers/Cpp: line 291) redirect https://www.cmake.org/cmake/help/v3.0/ - permanently to https://cmake.org/cmake/help/v3.0/ 14:29:14 ( developers/Web: line 9) ok https://www.djangoproject.com/ 14:29:14 (sysadmins/unix/server-postgresql: line 34) ok https://www.enterprisedb.com/ 14:29:15 (sysadmins/server-setup-examples: line 7) redirect https://www.cellnanos.uni-osnabrueck.de/en/startpage.html - temporarily to https://www.cellnanos.uni-osnabrueck.de/en/home.html 14:29:15 (sysadmins/system-requirements: line 56) ok https://www.cpubenchmark.net/singleThread.html#server-thread 14:29:16 (developers/index: line 28) ok https://www.gnu.org/licenses/licenses.html#GPL 14:29:16 (sysadmins/limitations: line 61) ok https://www.glencoesoftware.com/blog/2019/12/09/converting-whole-slide-images-to-OME-TIFF.html 14:29:16 (developers/Clients/ImportLibrary: line 32) ok https://www.glencoesoftware.com/ 14:29:16 (sysadmins/server-setup-examples: line 100) redirect https://www.gred-clermont.fr - permanently to https://www.igred.fr/ 14:29:16 (developers/Server/Context: line 21) ok https://www.martinfowler.com/eaaCatalog/unitOfWork.html 14:29:16 (developers/scripts/matlab-scripts: line 10) ok https://www.mathworks.com/help/matlab/matlab_external/install-the-matlab-engine-for-python.html 14:29:16 ( users/history: line 819) ok https://www.janelia.org/ 14:29:17 (developers/Server/ExtendingOmero: line 329) ok https://www.nginx.com/resources/wiki/ 14:29:17 (sysadmins/server-security: line 31) ok https://www.iana.org/assignments/service-names-port-numbers/service-names-port-numbers.xml 14:29:17 (developers/Clients/ImportLibrary: line 31) ok https://www.openmicroscopy.org 14:29:17 ( users/history: line 1147) ok https://www.openmicroscopy.org/2015/12/07/bio-formats-5-1-7.html 14:29:17 ( users/history: line 1118) ok https://www.openmicroscopy.org/2016/02/15/bio-formats-5-1-8.html 14:29:17 ( users/history: line 1073) ok https://www.openmicroscopy.org/2016/04/18/bio-formats-5-1-9.html 14:29:17 ( users/history: line 988) ok https://www.openmicroscopy.org/2016/05/09/bio-formats-5-1-10.html 14:29:17 ( users/history: line 892) ok https://www.openmicroscopy.org/2017/04/13/bio-formats-5-4-1.html 14:29:17 ( users/history: line 875) ok https://www.openmicroscopy.org/2017/05/08/bio-formats-5-5-0.html 14:29:17 ( users/history: line 841) ok https://www.openmicroscopy.org/2017/06/15/bio-formats-5-5-2.html 14:29:17 ( users/history: line 807) ok https://www.openmicroscopy.org/2017/07/05/bio-formats-5-5-3.html 14:29:17 ( users/history: line 791) ok https://www.openmicroscopy.org/2017/09/20/bio-formats-5-7-1.html 14:29:17 (sysadmins/limitations: line 61) ok https://www.openmicroscopy.org/2018/11/29/ometiffpyramid.html 14:29:17 (sysadmins/server-performance: line 187) ok https://www.nagios.org/ 14:29:17 (developers/Model/StructuredAnnotations: line 62) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2013-06/SA_xsd.html#Annotation 14:29:17 ( index: line 39) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome.html 14:29:17 (users/community-resources: line 23) redirect https://www.openmicroscopy.org/community/ - permanently to https://www.openmicroscopy.org/community/index.php 14:29:17 (sysadmins/server-performance: line 149) ok https://www.openmicroscopy.org/community/viewtopic.php?f=4&t=7400 14:29:17 (sysadmins/dropbox: line 152) ok https://www.openmicroscopy.org/community/viewtopic.php?f=4&t=7810#p15910 14:29:17 (users/community-resources: line 14) ok https://www.openmicroscopy.org/bio-formats 14:29:17 (sysadmins/unix/server-installation: line 458) ok https://www.openmicroscopy.org/community/viewtopic.php?f=5&t=360#p922 14:29:17 (sysadmins/server-ldap: line 315) ok https://www.openmicroscopy.org/community/viewtopic.php?f=5&t=14 14:29:17 (sysadmins/server-upgrade: line 255) ok https://www.openmicroscopy.org/community/viewtopic.php?f=5&t=7778 14:29:17 (sysadmins/troubleshooting: line 284) ok https://www.openmicroscopy.org/community/viewtopic.php?f=6&t=7722&p=15264&hilit=CheckedPath#p15264 14:29:17 (sysadmins/troubleshooting: line 282) ok https://www.openmicroscopy.org/community/viewtopic.php?f=5&t=7537 14:29:17 ( users/index: line 59) ok https://www.openmicroscopy.org/explore/ 14:29:17 (users/clients-overview: line 28) ok https://www.openmicroscopy.org/omero/analyze 14:29:17 (sysadmins/ansible-docker: line 32) ok https://www.openmicroscopy.org/omero/apps/ 14:29:17 (developers/Matlab: line 12) ok https://www.openmicroscopy.org/omero/downloads/ 14:29:17 (sysadmins/unix/install-web/walkthrough/omeroweb-install-centos7-ice3.6: line 77) ok https://www.openmicroscopy.org/omero/figure/ 14:29:17 (sysadmins/ansible-docker: line 25) ok https://www.openmicroscopy.org/omero/institution/getting-started.html 14:29:17 (sysadmins/public: line 97) ok https://www.openmicroscopy.org/omero/iviewer/ 14:29:17 ( users/index: line 54) ok https://www.openmicroscopy.org/omero/new 14:29:17 ( users/index: line 54) ok https://www.openmicroscopy.org/omero/scientists 14:29:17 (sysadmins/server-security: line 21) ok https://www.openmicroscopy.org/security/ 14:29:17 ( index: line 28) ok https://www.openmicroscopy.org/security/advisories/ 14:29:17 ( users/history: line 1694) ok https://www.openmicroscopy.org/security/advisories/2012-SV1-ldap-authentication 14:29:17 ( users/history: line 1526) ok https://www.openmicroscopy.org/security/advisories/2014-SV1-unicode-passwords 14:29:17 ( users/history: line 1527) ok https://www.openmicroscopy.org/security/advisories/2014-SV2-empty-passwords 14:29:17 ( users/history: line 1487) ok https://www.openmicroscopy.org/security/advisories/2014-SV3-csrf 14:29:17 ( users/history: line 1488) ok https://www.openmicroscopy.org/security/advisories/2014-SV4-poodle 14:29:17 ( users/history: line 1032) ok https://www.openmicroscopy.org/security/advisories/2016-SV1-cleanse 14:29:17 ( users/history: line 1017) ok https://www.openmicroscopy.org/security/advisories/2016-SV2-share 14:29:17 ( users/history: line 970) ok https://www.openmicroscopy.org/security/advisories/2017-SV1-filename 14:29:17 ( users/history: line 974) ok https://www.openmicroscopy.org/security/advisories/2017-SV2-edit-rw 14:29:17 ( users/history: line 977) ok https://www.openmicroscopy.org/security/advisories/2017-SV3-delete-script 14:29:17 ( users/history: line 796) ok https://www.openmicroscopy.org/security/advisories/2017-SV4-guest-user 14:29:17 (sysadmins/server-upgrade: line 134) ok https://www.openmicroscopy.org/security/advisories/2017-SV5-filename-2 14:29:17 ( users/history: line 581) ok https://www.openmicroscopy.org/security/advisories/2017-SV6-job-file-link 14:29:17 (developers/Modules/Api: line 28) ok https://www.openmicroscopy.org/support/ 14:29:18 (sysadmins/in-place-import: line 292) ok https://www.openwall.com/lists/kernel-hardening/2012/02/21/20 14:29:18 (sysadmins/server-backup-and-restore: line 162) redirect https://www.nongnu.org/rdiff-backup/docs.html - with Found to https://rdiff-backup.net/ 14:29:18 (developers/Server/ExtendingOmero: line 6) redirect https://www.openmicroscopy.org/forums - permanently to https://forum.image.sc/c/data-management/29 14:29:18 (developers/Web/LinkingFromWebclient: line 86) ok https://www.ncbi.nlm.nih.gov/protein/000397 14:29:19 (sysadmins/version-requirements: line 448) redirect https://www.oracle.com/technetwork/java/javase/downloads/index-jsp-138363.html - permanently to https://www.oracle.com/java/technologies/downloads/ 14:29:19 (sysadmins/unix/server-installation: line 130) redirect https://www.oracle.com/technetwork/java/javase/downloads/index.html - permanently to https://www.oracle.com/java/technologies/downloads/ 14:29:19 (sysadmins/version-requirements: line 397) ok https://www.oracle.com/technetwork/java/eol-135779.html 14:29:19 (sysadmins/server-backup-and-restore: line 112) ok https://www.postgresql.org/docs/10/backup.html 14:29:19 (sysadmins/unix/server-postgresql: line 145) redirect https://www.postgresql.org/docs/current/interactive/client-authentication.html - permanently to https://www.postgresql.org/docs/current/client-authentication.html 14:29:19 (sysadmins/unix/server-postgresql: line 140) redirect https://www.postgresql.org/docs/current/interactive/index.html - permanently to https://www.postgresql.org/docs/current/index.html 14:29:19 (sysadmins/version-requirements: line 266) ok https://www.postgresql.org/download/ 14:29:19 (sysadmins/unix/server-postgresql: line 143) redirect https://www.postgresql.org/docs/current/interactive/runtime-config-connection.html - permanently to https://www.postgresql.org/docs/current/runtime-config-connection.html 14:29:19 (sysadmins/unix/server-postgresql: line 12) ok https://www.postgresql.org/support/versioning/ 14:29:19 (developers/Server: line 32) redirect https://www.oracle.com/technetwork/java/javaee/ejb/index.html - permanently to https://www.oracle.com/java/technologies/enterprise-javabeans-technology.html 14:29:19 ( users/cli/index: line 4) ok https://www.python.org 14:29:20 (developers/GettingStarted: line 126) ok https://www.pgadmin.org/ 14:29:20 (sysadmins/version-requirements: line 295) redirect https://www.python.org/dev/peps/pep-0537/ - with Found to https://peps.python.org/pep-0537/ 14:29:20 (sysadmins/version-requirements: line 290) redirect https://www.python.org/dev/peps/pep-0494/ - with Found to https://peps.python.org/pep-0494/ 14:29:20 (sysadmins/config: line 1391) ok https://www.quartz-scheduler.org/api/1.8.6/org/quartz/CronExpression.html 14:29:20 (developers/Web/CSRF: line 14) ok https://www.rfc-editor.org/rfc/rfc2616.html#section-9.1.1 14:29:20 (developers/logging: line 4) ok https://www.slf4j.org 14:29:20 (sysadmins/server-syslog: line 52) ok https://www.splunk.com/ 14:29:20 (sysadmins/config: line 2324) ok https://www.w3.org/TR/referrer-policy/#referrer-policies 14:29:21 (developers/GettingStarted/AdvancedClientDevelopment: line 19) ok https://www.scons.org 14:29:21 (sysadmins/version-requirements: line 259) redirect https://yum.postgresql.org/15/redhat/rhel-9-x86_64/ - permanently to https://download.postgresql.org/pub/repos/yum/15/redhat/rhel-9-x86_64/ 14:29:21 ( developers/Cpp: line 4) ok https://zeroc.com 14:29:21 (sysadmins/version-requirements: line 256) redirect https://yum.postgresql.org/14/redhat/rhel-9-x86_64/ - permanently to https://download.postgresql.org/pub/repos/yum/14/redhat/rhel-9-x86_64/ 14:29:22 (sysadmins/version-requirements: line 262) redirect https://yum.postgresql.org/16/redhat/rhel-9-x86_64/ - permanently to https://download.postgresql.org/pub/repos/yum/16/redhat/rhel-9-x86_64/ 14:29:22 (sysadmins/unix/server-installation: line 196) redirect https://zeroc.com/downloads/ice - temporarily to https://zeroc.com/ice/downloads/3.7 14:29:22 ( developers/Web: line 29) redirect https://zeroc.com/products/ice - permanently to https://zeroc.com/ice 14:44:01 (users/clients-overview: line 18) redirect https://java.com/ - with Found to https://www.java.com/en/ 14:44:01 Adding redirects: 14:44:01 build succeeded. 14:44:01 14:44:01 Look for any errors in the above output or in _build/linkcheck/output.txt 14:44:02 14:44:02 Link check complete; look for any errors in the above output or in _build/linkcheck/output.txt. 14:44:02 Archiving artifacts 14:44:03 Finished: SUCCESS