08:34:44 Started by user devspace
08:34:44 Running as SYSTEM
08:34:44 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-docs
08:34:44 The recommended git tool is: NONE
08:34:44 No credentials specified
08:34:44 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-docs/.git # timeout=10
08:34:44 Fetching changes from the remote Git repository
08:34:44 > git config remote.origin.url https://github.com/ome/ome-documentation # timeout=10
08:34:44 Fetching upstream changes from https://github.com/ome/ome-documentation
08:34:44 > git --version # timeout=10
08:34:44 > git --version # 'git version 2.39.3'
08:34:44 > git fetch --tags --force --progress -- https://github.com/ome/ome-documentation +refs/heads/*:refs/remotes/origin/* # timeout=10
08:34:45 > git rev-parse origin/develop^{commit} # timeout=10
08:34:45 Checking out Revision 24ff539892177d1be75e29c0f33f7ef4bf3bd00e (origin/develop)
08:34:45 > git config core.sparsecheckout # timeout=10
08:34:45 > git checkout -f 24ff539892177d1be75e29c0f33f7ef4bf3bd00e # timeout=10
08:34:46 Commit message: "Merge pull request #2453 from ome/create-pull-request/patch"
08:34:46 > git rev-list --no-walk 24ff539892177d1be75e29c0f33f7ef4bf3bd00e # timeout=10
08:34:46 Cleaning workspace
08:34:46 > git rev-parse --verify HEAD # timeout=10
08:34:46 Resetting working tree
08:34:46 > git reset --hard # timeout=10
08:34:46 > git clean -fdx # timeout=10
08:34:47 [OMERO-docs] $ /bin/bash -xe /tmp/jenkins11584210295370483766.sh
08:34:47 + python3 -mvenv venv
08:34:49 + source /home/omero/workspace/OMERO-docs/venv/bin/activate
08:34:49 ++ deactivate nondestructive
08:34:49 ++ '[' -n '' ']'
08:34:49 ++ '[' -n '' ']'
08:34:49 ++ '[' -n /bin/bash -o -n '' ']'
08:34:49 ++ hash -r
08:34:49 ++ '[' -n '' ']'
08:34:49 ++ unset VIRTUAL_ENV
08:34:49 ++ '[' '!' nondestructive = nondestructive ']'
08:34:49 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-docs/venv
08:34:49 ++ export VIRTUAL_ENV
08:34:49 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
08:34:49 ++ PATH=/home/omero/workspace/OMERO-docs/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
08:34:49 ++ export PATH
08:34:49 ++ '[' -n '' ']'
08:34:49 ++ '[' -z '' ']'
08:34:49 ++ _OLD_VIRTUAL_PS1=
08:34:49 ++ PS1='(venv) '
08:34:49 ++ export PS1
08:34:49 ++ '[' -n /bin/bash -o -n '' ']'
08:34:49 ++ hash -r
08:34:49 + pip install -U pip
08:34:50 Requirement already satisfied: pip in ./venv/lib/python3.9/site-packages (21.2.3)
08:34:50 Collecting pip
08:34:50 Using cached pip-24.2-py3-none-any.whl (1.8 MB)
08:34:50 Installing collected packages: pip
08:34:50 Attempting uninstall: pip
08:34:50 Found existing installation: pip 21.2.3
08:34:50 Uninstalling pip-21.2.3:
08:34:50 Successfully uninstalled pip-21.2.3
08:34:51 Successfully installed pip-24.2
08:34:51 + pip install -U scc
08:34:52 Collecting scc
08:34:52 Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB)
08:34:52 Collecting PyGithub>=1.54 (from scc)
08:34:52 Using cached PyGithub-2.3.0-py3-none-any.whl.metadata (3.8 kB)
08:34:52 Collecting PyYAML>=5.1 (from scc)
08:34:52 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
08:34:52 Collecting future (from scc)
08:34:52 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
08:34:52 Collecting ruamel.yaml (from scc)
08:34:52 Using cached ruamel.yaml-0.18.6-py3-none-any.whl.metadata (23 kB)
08:34:52 Collecting ruamel.yaml.jinja2 (from scc)
08:34:52 Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB)
08:34:52 Collecting six (from scc)
08:34:52 Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB)
08:34:52 Collecting urllib3<2 (from scc)
08:34:52 Using cached urllib3-1.26.19-py2.py3-none-any.whl.metadata (49 kB)
08:34:52 Collecting yaclifw<0.3,>=0.2.0 (from scc)
08:34:52 Using cached yaclifw-0.2.0-py3-none-any.whl
08:34:52 Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc)
08:34:52 Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl.metadata (8.6 kB)
08:34:52 Collecting requests>=2.14.0 (from PyGithub>=1.54->scc)
08:34:52 Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB)
08:34:52 Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
08:34:52 Using cached PyJWT-2.9.0-py3-none-any.whl.metadata (3.0 kB)
08:34:53 Collecting typing-extensions>=4.0.0 (from PyGithub>=1.54->scc)
08:34:53 Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB)
08:34:53 Collecting Deprecated (from PyGithub>=1.54->scc)
08:34:53 Using cached Deprecated-1.2.14-py2.py3-none-any.whl.metadata (5.4 kB)
08:34:53 Collecting ruamel.yaml.clib>=0.2.7 (from ruamel.yaml->scc)
08:34:53 Using cached ruamel.yaml.clib-0.2.8-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl.metadata (2.2 kB)
08:34:53 Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
08:34:53 Using cached cryptography-43.0.0-cp39-abi3-manylinux_2_28_x86_64.whl.metadata (5.4 kB)
08:34:53 Collecting cffi>=1.4.1 (from pynacl>=1.4.0->PyGithub>=1.54->scc)
08:34:53 Using cached cffi-1.17.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (1.5 kB)
08:34:53 Collecting charset-normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc)
08:34:53 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB)
08:34:53 Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc)
08:34:53 Using cached idna-3.7-py3-none-any.whl.metadata (9.9 kB)
08:34:53 Collecting certifi>=2017.4.17 (from requests>=2.14.0->PyGithub>=1.54->scc)
08:34:53 Using cached certifi-2024.7.4-py3-none-any.whl.metadata (2.2 kB)
08:34:53 Collecting wrapt<2,>=1.10 (from Deprecated->PyGithub>=1.54->scc)
08:34:53 Using cached wrapt-1.16.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB)
08:34:53 Collecting pycparser (from cffi>=1.4.1->pynacl>=1.4.0->PyGithub>=1.54->scc)
08:34:53 Using cached pycparser-2.22-py3-none-any.whl.metadata (943 bytes)
08:34:53 Using cached scc-0.20.0-py3-none-any.whl (48 kB)
08:34:53 Using cached PyGithub-2.3.0-py3-none-any.whl (354 kB)
08:34:53 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (737 kB)
08:34:53 Using cached urllib3-1.26.19-py2.py3-none-any.whl (143 kB)
08:34:53 Using cached future-1.0.0-py3-none-any.whl (491 kB)
08:34:53 Using cached ruamel.yaml-0.18.6-py3-none-any.whl (117 kB)
08:34:53 Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB)
08:34:53 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
08:34:53 Using cached PyJWT-2.9.0-py3-none-any.whl (22 kB)
08:34:53 Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (856 kB)
08:34:53 Using cached requests-2.32.3-py3-none-any.whl (64 kB)
08:34:53 Using cached ruamel.yaml.clib-0.2.8-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl (562 kB)
08:34:53 Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB)
08:34:53 Using cached Deprecated-1.2.14-py2.py3-none-any.whl (9.6 kB)
08:34:53 Using cached certifi-2024.7.4-py3-none-any.whl (162 kB)
08:34:53 Using cached cffi-1.17.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (444 kB)
08:34:53 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB)
08:34:53 Using cached cryptography-43.0.0-cp39-abi3-manylinux_2_28_x86_64.whl (4.0 MB)
08:34:53 Using cached idna-3.7-py3-none-any.whl (66 kB)
08:34:53 Using cached wrapt-1.16.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (80 kB)
08:34:53 Using cached pycparser-2.22-py3-none-any.whl (117 kB)
08:34:54 Installing collected packages: wrapt, urllib3, typing-extensions, six, ruamel.yaml.clib, PyYAML, pyjwt, pycparser, idna, future, charset-normalizer, certifi, yaclifw, ruamel.yaml, requests, Deprecated, cffi, ruamel.yaml.jinja2, pynacl, cryptography, PyGithub, scc
08:34:55 Successfully installed Deprecated-1.2.14 PyGithub-2.3.0 PyYAML-6.0.2 certifi-2024.7.4 cffi-1.17.0 charset-normalizer-3.3.2 cryptography-43.0.0 future-1.0.0 idna-3.7 pycparser-2.22 pyjwt-2.9.0 pynacl-1.5.0 requests-2.32.3 ruamel.yaml-0.18.6 ruamel.yaml.clib-0.2.8 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.16.0 typing-extensions-4.12.2 urllib3-1.26.19 wrapt-1.16.0 yaclifw-0.2.0
08:34:55 + test -e src
08:34:55 + scc merge develop --no-ask --reset --comment -S success-only --push merge_ci
08:34:57 Following Github server redirection from /repos/ome/ome-documentation to /repositories/3198415
08:34:57 2024-08-22 08:34:57,410 [github.Reque] INFO Following Github server redirection from /repos/ome/ome-documentation to /repositories/3198415
08:34:59 2024-08-22 08:34:59,418 [ scc.merge] INFO Merging Pull Request(s) based on develop
08:34:59 2024-08-22 08:34:59,419 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
08:34:59 2024-08-22 08:34:59,419 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
08:34:59 2024-08-22 08:34:59,419 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
08:34:59 2024-08-22 08:34:59,419 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
08:34:59 2024-08-22 08:34:59,419 [ scc.merge] INFO Excluding Pull Request(s) without successful status
08:35:15 2024-08-22 08:35:15,506 [ scc.git] INFO - PR 2353 jburel 'Mencoder'
08:35:15 Conflicting PR. Removed from build [OMERO-docs#159](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-docs/159/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-docs/159/consoleText) for more details.
08:35:15 Possible conflicts:
08:35:15 - Upstream changes
08:35:15 - omero/sysadmins/omeromovie.rst
08:35:15
08:35:15 --conflicts
08:35:15
08:35:15 2024-08-22 08:35:15,972 [ scc.merge] INFO Repository: ome/ome-documentation
08:35:15 2024-08-22 08:35:15,972 [ scc.merge] INFO Excluded PRs:
08:35:15 2024-08-22 08:35:15,972 [ scc.merge] INFO - PR 2393 bernt-matthias 'fix option capitalization' (user: bernt-matthias)
08:35:15 2024-08-22 08:35:15,972 [ scc.merge] INFO - PR 2357 fmeyenhofer 'Add a OMERO.table visualisation example' (user: fmeyenhofer)
08:35:15 2024-08-22 08:35:15,973 [ scc.merge] INFO - PR 2347 jburel 'pin version to match rtd ones' (exclude comment)
08:35:15 2024-08-22 08:35:15,973 [ scc.merge] INFO - PR 2298 pwalczysko 'test' (exclude comment)
08:35:15 2024-08-22 08:35:15,973 [ scc.merge] INFO - PR 2291 pwalczysko 'Add ansible and docker install doc - former "install.rst"' (status: failure)
08:35:15 2024-08-22 08:35:15,973 [ scc.merge] INFO Already up to date.
08:35:15 2024-08-22 08:35:15,973 [ scc.merge] INFO
08:35:15 2024-08-22 08:35:15,973 [ scc.merge] INFO Merged PRs:
08:35:15 2024-08-22 08:35:15,973 [ scc.merge] INFO - PR 2355 will-moore 'Update python Tables code to use 'Image' column'
08:35:15 2024-08-22 08:35:15,973 [ scc.merge] INFO
08:35:15 2024-08-22 08:35:15,973 [ scc.merge] INFO Conflicting PRs (not included):
08:35:15 2024-08-22 08:35:15,973 [ scc.merge] INFO - PR 2353 jburel 'Mencoder'
08:35:15 2024-08-22 08:35:15,973 [ scc.merge] INFO
08:35:18 2024-08-22 08:35:18,146 [ scc.merge] INFO Merged branch pushed to https://github.com/snoopycrimecop/ome-documentation/tree/merge_ci
08:35:18 [OMERO-docs] $ /bin/bash -xe /tmp/jenkins7571064895219919757.sh
08:35:18 + source /home/omero/workspace/OMERO-docs/venv/bin/activate
08:35:18 ++ deactivate nondestructive
08:35:18 ++ '[' -n '' ']'
08:35:18 ++ '[' -n '' ']'
08:35:18 ++ '[' -n /bin/bash -o -n '' ']'
08:35:18 ++ hash -r
08:35:18 ++ '[' -n '' ']'
08:35:18 ++ unset VIRTUAL_ENV
08:35:18 ++ '[' '!' nondestructive = nondestructive ']'
08:35:18 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-docs/venv
08:35:18 ++ export VIRTUAL_ENV
08:35:18 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
08:35:18 ++ PATH=/home/omero/workspace/OMERO-docs/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
08:35:18 ++ export PATH
08:35:18 ++ '[' -n '' ']'
08:35:18 ++ '[' -z '' ']'
08:35:18 ++ _OLD_VIRTUAL_PS1=
08:35:18 ++ PS1='(venv) '
08:35:18 ++ export PS1
08:35:18 ++ '[' -n /bin/bash -o -n '' ']'
08:35:18 ++ hash -r
08:35:18 + pip install -r requirements.txt
08:35:19 Collecting sphinx==5.3.0 (from -r requirements.txt (line 1))
08:35:19 Using cached sphinx-5.3.0-py3-none-any.whl.metadata (6.4 kB)
08:35:19 Collecting sphinx_rtd_theme==1.1.1 (from -r requirements.txt (line 2))
08:35:19 Using cached sphinx_rtd_theme-1.1.1-py2.py3-none-any.whl.metadata (4.4 kB)
08:35:19 Collecting sphinxcontrib-applehelp (from sphinx==5.3.0->-r requirements.txt (line 1))
08:35:19 Using cached sphinxcontrib_applehelp-2.0.0-py3-none-any.whl.metadata (2.3 kB)
08:35:19 Collecting sphinxcontrib-devhelp (from sphinx==5.3.0->-r requirements.txt (line 1))
08:35:19 Using cached sphinxcontrib_devhelp-2.0.0-py3-none-any.whl.metadata (2.3 kB)
08:35:19 Collecting sphinxcontrib-jsmath (from sphinx==5.3.0->-r requirements.txt (line 1))
08:35:19 Using cached sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl.metadata (1.4 kB)
08:35:19 Collecting sphinxcontrib-htmlhelp>=2.0.0 (from sphinx==5.3.0->-r requirements.txt (line 1))
08:35:19 Using cached sphinxcontrib_htmlhelp-2.1.0-py3-none-any.whl.metadata (2.3 kB)
08:35:20 Collecting sphinxcontrib-serializinghtml>=1.1.5 (from sphinx==5.3.0->-r requirements.txt (line 1))
08:35:20 Using cached sphinxcontrib_serializinghtml-2.0.0-py3-none-any.whl.metadata (2.4 kB)
08:35:20 Collecting sphinxcontrib-qthelp (from sphinx==5.3.0->-r requirements.txt (line 1))
08:35:20 Using cached sphinxcontrib_qthelp-2.0.0-py3-none-any.whl.metadata (2.3 kB)
08:35:20 Collecting Jinja2>=3.0 (from sphinx==5.3.0->-r requirements.txt (line 1))
08:35:20 Using cached jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB)
08:35:20 Collecting Pygments>=2.12 (from sphinx==5.3.0->-r requirements.txt (line 1))
08:35:20 Using cached pygments-2.18.0-py3-none-any.whl.metadata (2.5 kB)
08:35:21 Collecting docutils<0.20,>=0.14 (from sphinx==5.3.0->-r requirements.txt (line 1))
08:35:21 Using cached docutils-0.19-py3-none-any.whl.metadata (2.7 kB)
08:35:21 Collecting snowballstemmer>=2.0 (from sphinx==5.3.0->-r requirements.txt (line 1))
08:35:21 Using cached snowballstemmer-2.2.0-py2.py3-none-any.whl.metadata (6.5 kB)
08:35:21 Collecting babel>=2.9 (from sphinx==5.3.0->-r requirements.txt (line 1))
08:35:21 Using cached babel-2.16.0-py3-none-any.whl.metadata (1.5 kB)
08:35:21 Collecting alabaster<0.8,>=0.7 (from sphinx==5.3.0->-r requirements.txt (line 1))
08:35:21 Using cached alabaster-0.7.16-py3-none-any.whl.metadata (2.9 kB)
08:35:21 Collecting imagesize>=1.3 (from sphinx==5.3.0->-r requirements.txt (line 1))
08:35:21 Using cached imagesize-1.4.1-py2.py3-none-any.whl.metadata (1.5 kB)
08:35:21 Requirement already satisfied: requests>=2.5.0 in ./venv/lib/python3.9/site-packages (from sphinx==5.3.0->-r requirements.txt (line 1)) (2.32.3)
08:35:22 Collecting packaging>=21.0 (from sphinx==5.3.0->-r requirements.txt (line 1))
08:35:22 Using cached packaging-24.1-py3-none-any.whl.metadata (3.2 kB)
08:35:22 Collecting importlib-metadata>=4.8 (from sphinx==5.3.0->-r requirements.txt (line 1))
08:35:22 Using cached importlib_metadata-8.4.0-py3-none-any.whl.metadata (4.7 kB)
08:35:22 Collecting docutils<0.20,>=0.14 (from sphinx==5.3.0->-r requirements.txt (line 1))
08:35:22 Using cached docutils-0.17.1-py2.py3-none-any.whl.metadata (2.9 kB)
08:35:22 Collecting zipp>=0.5 (from importlib-metadata>=4.8->sphinx==5.3.0->-r requirements.txt (line 1))
08:35:22 Using cached zipp-3.20.0-py3-none-any.whl.metadata (3.6 kB)
08:35:22 Collecting MarkupSafe>=2.0 (from Jinja2>=3.0->sphinx==5.3.0->-r requirements.txt (line 1))
08:35:22 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB)
08:35:22 Requirement already satisfied: charset-normalizer<4,>=2 in ./venv/lib/python3.9/site-packages (from requests>=2.5.0->sphinx==5.3.0->-r requirements.txt (line 1)) (3.3.2)
08:35:22 Requirement already satisfied: idna<4,>=2.5 in ./venv/lib/python3.9/site-packages (from requests>=2.5.0->sphinx==5.3.0->-r requirements.txt (line 1)) (3.7)
08:35:22 Requirement already satisfied: urllib3<3,>=1.21.1 in ./venv/lib/python3.9/site-packages (from requests>=2.5.0->sphinx==5.3.0->-r requirements.txt (line 1)) (1.26.19)
08:35:22 Requirement already satisfied: certifi>=2017.4.17 in ./venv/lib/python3.9/site-packages (from requests>=2.5.0->sphinx==5.3.0->-r requirements.txt (line 1)) (2024.7.4)
08:35:22 Using cached sphinx-5.3.0-py3-none-any.whl (3.2 MB)
08:35:23 Using cached sphinx_rtd_theme-1.1.1-py2.py3-none-any.whl (2.8 MB)
08:35:23 Using cached alabaster-0.7.16-py3-none-any.whl (13 kB)
08:35:23 Using cached babel-2.16.0-py3-none-any.whl (9.6 MB)
08:35:23 Using cached docutils-0.17.1-py2.py3-none-any.whl (575 kB)
08:35:23 Using cached imagesize-1.4.1-py2.py3-none-any.whl (8.8 kB)
08:35:23 Using cached importlib_metadata-8.4.0-py3-none-any.whl (26 kB)
08:35:23 Using cached jinja2-3.1.4-py3-none-any.whl (133 kB)
08:35:24 Using cached packaging-24.1-py3-none-any.whl (53 kB)
08:35:24 Using cached pygments-2.18.0-py3-none-any.whl (1.2 MB)
08:35:24 Using cached snowballstemmer-2.2.0-py2.py3-none-any.whl (93 kB)
08:35:24 Using cached sphinxcontrib_htmlhelp-2.1.0-py3-none-any.whl (98 kB)
08:35:24 Using cached sphinxcontrib_serializinghtml-2.0.0-py3-none-any.whl (92 kB)
08:35:24 Using cached sphinxcontrib_applehelp-2.0.0-py3-none-any.whl (119 kB)
08:35:24 Using cached sphinxcontrib_devhelp-2.0.0-py3-none-any.whl (82 kB)
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08:35:24 Using cached sphinxcontrib_qthelp-2.0.0-py3-none-any.whl (88 kB)
08:35:24 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB)
08:35:24 Using cached zipp-3.20.0-py3-none-any.whl (9.4 kB)
08:35:24 Installing collected packages: snowballstemmer, zipp, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, Pygments, packaging, MarkupSafe, imagesize, docutils, babel, alabaster, Jinja2, importlib-metadata, sphinx, sphinx_rtd_theme
08:35:27 Successfully installed Jinja2-3.1.4 MarkupSafe-2.1.5 Pygments-2.18.0 alabaster-0.7.16 babel-2.16.0 docutils-0.17.1 imagesize-1.4.1 importlib-metadata-8.4.0 packaging-24.1 snowballstemmer-2.2.0 sphinx-5.3.0 sphinx_rtd_theme-1.1.1 sphinxcontrib-applehelp-2.0.0 sphinxcontrib-devhelp-2.0.0 sphinxcontrib-htmlhelp-2.1.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-2.0.0 sphinxcontrib-serializinghtml-2.0.0 zipp-3.20.0
08:35:27 + cd omero
08:35:27 + make clean html linkcheck
08:35:27 rm -rf _build/*
08:35:27 sphinx-build -b html -d _build/doctrees . _build/html
08:35:27 Running Sphinx v5.3.0
08:35:28 making output directory... done
08:35:28 building [mo]: targets for 0 po files that are out of date
08:35:28 building [html]: targets for 159 source files that are out of date
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08:36:22 (developers/Server/GraphsImpl: line 70) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/cmd/graphs/BaseGraphPolicyAdjuster.html
08:36:22 (developers/Server/GraphsImpl: line 48) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/cmd/graphs/BaseGraphTraversalProcessor.html
08:36:22 (developers/Server/GraphsImpl: line 77) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/cmd/graphs/ChildOptionsPolicy.html
08:36:22 (developers/Server/GraphsImpl: line 100) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/cmd/graphs/GraphHelper.html
08:36:22 (developers/Server/GraphsImpl: line 100) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/cmd/graphs/GraphRequestFactory.html
08:36:22 (developers/Server/GraphsImpl: line 100) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/cmd/graphs/GraphUtil.html
08:36:22 (developers/Server/GraphsImpl: line 48) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/cmd/graphs/NullGraphTraversalProcessor.html
08:36:22 (developers/Server/GraphsImpl: line 83) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/cmd/graphs/SkipHeadPolicy.html
08:36:22 (developers/Server/GraphsImpl: line 86) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/cmd/graphs/SkipTailPolicy.html
08:36:22 (developers/Model/Units: line 16) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/model/ElectricPotentialI.html
08:36:22 (developers/Model/Units: line 17) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/model/FrequencyI.html
08:36:22 (developers/Model/Units: line 18) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/model/LengthI.html
08:36:22 (developers/Model/Units: line 19) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/model/PowerI.html
08:36:22 (developers/Model/Units: line 20) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/model/PressureI.html
08:36:22 (developers/Model/Units: line 21) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/model/TemperatureI.html
08:36:22 (developers/Model/Units: line 22) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/model/TimeI.html
08:36:22 ( index: line 35) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/
08:36:22 (developers/Modules/Api: line 126) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api.html
08:36:22 (developers/Modules/Api: line 45) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IAdmin.html
08:36:22 ( developers/Java: line 687) redirect https://docs.openmicroscopy.org/latest/ome-model/developers/roi.html - with Found to https://ome-model.readthedocs.io/en/stable/developers/roi.html
08:36:22 (developers/Modules/Api: line 50) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IConfig.html
08:36:22 (developers/Modules/Api: line 54) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IContainer.html
08:36:22 (developers/Modules/Api: line 57) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/ILdap.html
08:36:22 (developers/Modules/Api: line 61) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IMetadata.html
08:36:22 (developers/Modules/Api: line 64) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IPixels.html
08:36:22 (developers/Modules/Api: line 67) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IProjection.html
08:36:22 (developers/Modules/Api: line 70) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IQuery.html
08:36:22 (developers/Modules/Api: line 74) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IRenderingSettings.html
08:36:22 (developers/GettingStarted/AdvancedClientDevelopment: line 477) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IQuery.html#projection
08:36:22 (developers/Modules/Api: line 77) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IRepositoryInfo.html
08:36:22 (developers/Modules/Api: line 80) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IRoi.html
08:36:22 (developers/Modules/Api: line 83) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IScript.html
08:36:22 (developers/Modules/Api: line 86) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/ISession.html
08:36:22 (developers/Modules/Api: line 89) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IShare.html
08:36:22 (developers/Modules/Api: line 91) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/ITimeline.html
08:36:22 (developers/Modules/Api: line 94) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/ITypes.html
08:36:22 (developers/Modules/Api: line 97) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IUpdate.html
08:36:22 (developers/Modules/Api: line 111) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/RawFileStore.html
08:36:22 (developers/Modules/Api: line 114) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/RawPixelsStore.html
08:36:22 (developers/Modules/Api: line 117) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/RenderingEngine.html
08:36:22 (developers/Modules/Api: line 16) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/ServiceFactory.html
08:36:22 (developers/GettingStarted/AdvancedClientDevelopment: line 366) redirect https://docs.openmicroscopy.org/latest/ome-model/ome-xml/ - with Found to https://ome-model.readthedocs.io/en/stable/ome-xml/
08:36:22 (developers/PythonBlitzGateway: line 111) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/ServiceFactory.html#getQueryService
08:36:22 (developers/PythonBlitzGateway: line 111) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/ServiceFactory.html#createRenderingEngine
08:36:22 (developers/Modules/Api: line 121) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/ThumbnailStore.html
08:36:22 (developers/Server/GraphRequests: line 75) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/Chgrp2.html
08:36:22 (developers/Server/GraphRequests: line 83) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/Chmod2.html
08:36:22 (developers/Server/GraphRequests: line 79) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/Chown2.html
08:36:22 (developers/Server/GraphRequests: line 88) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/Delete2.html
08:36:22 (developers/Server/GraphRequests: line 96) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/Duplicate.html
08:36:22 (developers/Server/GraphRequests: line 27) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/DiskUsage2.html
08:36:22 (developers/Server/GraphRequests: line 34) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/FindParents.html
08:36:22 (developers/Server/GraphRequests: line 42) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/FindChildren.html
08:36:22 (developers/Server/GraphRequests: line 59) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/GraphModify2.html
08:36:22 (developers/Server/GraphRequests: line 6) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/GraphQuery.html
08:36:22 (developers/Server/GraphRequests: line 18) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/LegalGraphTargets.html
08:36:22 (developers/Server/GraphRequests: line 104) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/SkipHead.html
08:36:22 (developers/GettingStarted: line 136) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model.html
08:36:22 (developers/Tables: line 339) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/grid/Table.html
08:36:22 (developers/Server/GraphRequests: line 71) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/graphs/ChildOption.html
08:36:22 (developers/GettingStarted: line 161) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Annotation.html
08:36:22 (developers/Server/LightAdmins: line 22) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/AdminPrivilege.html
08:36:22 (developers/GettingStarted: line 179) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Channel.html
08:36:23 (developers/GettingStarted: line 161) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/CommentAnnotation.html
08:36:23 (developers/GettingStarted: line 150) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Dataset.html
08:36:23 (developers/GettingStarted: line 161) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/DatasetAnnotationLink.html
08:36:23 (developers/GettingStarted: line 150) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/DatasetImageLink.html
08:36:23 (developers/GettingStarted: line 161) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/FileAnnotation.html
08:36:23 (developers/GettingStarted: line 150) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Image.html
08:36:23 (developers/Server/Permissions: line 381) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Permissions.html#canChgrp
08:36:23 (developers/Server/Permissions: line 380) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Permissions.html#canAnnotate
08:36:23 (developers/Server/Permissions: line 382) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Permissions.html#canChown
08:36:23 (developers/Server/Permissions: line 384) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Permissions.html#canEdit
08:36:23 (developers/Server/Permissions: line 385) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Permissions.html#canLink
08:36:23 (developers/Server/Permissions: line 383) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Permissions.html#canDelete
08:36:23 (developers/GettingStarted: line 161) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/ProjectAnnotationLink.html
08:36:23 (developers/GettingStarted: line 179) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Pixels.html
08:36:23 (developers/GettingStarted: line 150) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Project.html
08:36:23 (developers/GettingStarted: line 150) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/ProjectDatasetLink.html
08:36:23 (developers/Server/LightAdmins: line 160) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/sys/EventContext.html
08:36:23 ( developers/Java: line 52) ok https://docs.openmicroscopy.org/omero-gateway/5.9.1/javadoc//omero/gateway/facility/package-summary.html
08:36:23 (sysadmins/config: line 1664) redirect https://docs.openmicroscopy.org/latest/omero/sysadmins/customization.html#download-restrictions - with Found to https://omero.readthedocs.io/en/stable/sysadmins/customization.html#download-restrictions
08:36:23 ( developers/Java: line 52) ok https://docs.openmicroscopy.org/omero-gateway/5.9.1/javadoc/omero/gateway/facility/BrowseFacility.html
08:36:23 ( developers/Java: line 44) ok https://docs.openmicroscopy.org/omero-gateway/5.9.1/javadoc/omero/gateway/Gateway.html
08:36:23 ( developers/Java: line 57) ok https://docs.openmicroscopy.org/omero-gateway/5.9.1/javadoc/omero/gateway/model/DataObject.html
08:36:23 (developers/Model/EveryObject: line 24) ok https://docs.openmicroscopy.org/omero-model/5.6.14/javadoc/ome/model/IEnum.html
08:36:23 (developers/Model/EveryObject: line 425) ok https://docs.openmicroscopy.org/omero-model/5.6.14/javadoc/ome/model/units/ElectricPotential.html
08:36:23 (developers/Model/EveryObject: line 54) ok https://docs.openmicroscopy.org/omero-model/5.6.14/javadoc/ome/model/IMutable.html
08:36:23 (developers/Model/EveryObject: line 92) ok https://docs.openmicroscopy.org/omero-model/5.6.14/javadoc/ome/model/ILink.html
08:36:23 (developers/Model/EveryObject: line 467) ok https://docs.openmicroscopy.org/omero-model/5.6.14/javadoc/ome/model/units/Frequency.html
08:36:23 (developers/Model/EveryObject: line 580) ok https://docs.openmicroscopy.org/omero-model/5.6.14/javadoc/ome/model/units/Length.html
08:36:23 (developers/Model/EveryObject: line 114) ok https://docs.openmicroscopy.org/omero-model/5.6.14/javadoc/ome/model/units/Power.html
08:36:23 (developers/Model/EveryObject: line 1190) ok https://docs.openmicroscopy.org/omero-model/5.6.14/javadoc/ome/model/units/Pressure.html
08:36:23 (developers/Model/EveryObject: line 1190) ok https://docs.openmicroscopy.org/omero-model/5.6.14/javadoc/ome/model/units/Temperature.html
08:36:23 (developers/Model/EveryObject: line 2238) ok https://docs.openmicroscopy.org/omero-model/5.6.14/javadoc/ome/model/units/Time.html
08:36:23 (developers/Server/LightAdmins: line 219) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/logic/AdminImpl.html
08:36:23 (developers/Server/LightAdmins: line 242) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/security/basic/LightAdminPrivilegesCleanup.html
08:36:23 (developers/Server/LightAdmins: line 219) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/security/basic/BasicACLVoter.html
08:36:23 (developers/Server/LightAdmins: line 219) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/security/basic/OmeroInterceptor.html
08:36:23 (developers/Server/LightAdmins: line 102) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/security/basic/LightAdminPrivilegesSecurityFilter.html
08:36:23 (developers/Server/GraphsImpl: line 11) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/GraphPathBean.html
08:36:23 (developers/Server/GraphsImpl: line 11) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/GraphPathReport.html
08:36:23 (developers/Server/GraphsImpl: line 88) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/GraphPolicyRulePredicate.html
08:36:23 (developers/Server/GraphsImpl: line 60) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/GraphPolicyRule.html
08:36:23 (developers/Server/GraphsImpl: line 60) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/GraphPolicy.html
08:36:23 (developers/Server/GraphsImpl: line 32) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/GraphTraversal.PlanExecutor.html
08:36:23 (developers/Server/GraphsImpl: line 22) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/GraphTraversal.html
08:36:23 (developers/Server/GraphsImpl: line 88) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/GroupPredicate.html
08:36:23 (developers/Server/GraphsImpl: line 32) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/GraphTraversal.Processor.html
08:36:23 (developers/Server/GraphsImpl: line 42) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/ModelObjectSequencer.html
08:36:23 (developers/Server/GraphsImpl: line 88) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/PermissionsPredicate.html
08:36:23 (developers/Server/LightAdmins: line 236) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/util/DBUserCheck.html
08:36:23 ( users/history: line 1024) ok https://docs.openmicroscopy.org/omero/5.3.0/developers/whatsnew.html
08:36:23 ( sysadmins/index: line 15) redirect https://docs.openmicroscopy.org/latest/ome-model/specifications/ - with Found to https://ome-model.readthedocs.io/en/stable/specifications/
08:36:23 (sysadmins/whatsnew: line 16) redirect https://docs.openmicroscopy.org/omero/5.5/sysadmins/whatsnew.html - permanently to https://docs.openmicroscopy.org/omero/5.5.1/sysadmins/whatsnew.html
08:36:23 (developers/Modules/Api: line 223) ok https://docs.oracle.com/javase/tutorial/java/annotations/basics.html
08:36:23 (users/cli/import-target: line 157) ok https://docs.oracle.com/javase/7/docs/api/java/util/regex/Pattern.html
08:36:23 (developers/testing: line 45) ok https://docs.pytest.org/en/latest/
08:36:23 (sysadmins/config: line 811) ok https://docs.oracle.com/javase/jndi/tutorial/ldap/connect/create.html
08:36:23 (sysadmins/server-ldap: line 318) ok https://docs.oracle.com/javase/jndi/tutorial/ldap/referral/jndi.html
08:36:23 (sysadmins/dropbox: line 152) ok https://docs.python.org/2.7/library/site.html
08:36:23 (sysadmins/config: line 1011) ok https://docs.python.org/3/library/logging.html#levels
08:36:23 (sysadmins/config: line 2205) redirect https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples - with Found to https://omero.readthedocs.io/en/stable/sysadmins/grid.html#deployment-examples
08:36:23 (sysadmins/config: line 924) ok https://docs.oracle.com/javase/tutorial/jndi/newstuff/readtimeout.html
08:36:24 (sysadmins/version-requirements: line 248) ok https://download.postgresql.org/pub/repos/yum/12/redhat/rhel-9-x86_64/
08:36:24 (sysadmins/python3-migration: line 84) ok https://downloads.openmicroscopy.org
08:36:24 (sysadmins/UpgradeCheck: line 29) redirect https://downloads.openmicroscopy.org/latest/omero - permanently to https://downloads.openmicroscopy.org/omero/5.6.13/
08:36:24 (sysadmins/unix/server-install-homebrew: line 204) redirect https://downloads.openmicroscopy.org/latest/omero/artifacts/ - permanently to https://downloads.openmicroscopy.org/omero/5.6.13/artifacts/
08:36:24 (developers/GettingStarted: line 56) redirect https://downloads.openmicroscopy.org/latest/omero5.5/ - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/
08:36:24 (developers/analysis: line 12) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/ - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/api/
08:36:24 (sysadmins/version-requirements: line 195) ok https://download.rockylinux.org/pub/rocky/9/BaseOS/x86_64/os/Packages/
08:36:24 (developers/Server/Aop: line 77) redirect https://docs.spring.io/spring/docs/2.0.x/reference/aop.html - permanently to https://docs.spring.io/spring-framework/docs/2.0.x/reference/aop.html
08:36:24 (developers/testing: line 342) ok https://docs.pytest.org/en/latest/how-to/usage.html
08:36:24 ( index: line 35) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/ - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/
08:36:24 (developers/PythonBlitzGateway: line 91) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/omero/omero.gateway.html - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/omero/omero.gateway.html
08:36:24 (developers/PythonBlitzGateway: line 171) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/omero/omero.gateway.html#omero.gateway.ImageWrapper - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/omero/omero.gateway.html#omero.gateway.ImageWrapper
08:36:24 (developers/PythonBlitzGateway: line 19) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/omero/omero.gateway.html#omero.gateway._BlitzGateway - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/omero/omero.gateway.html#omero.gateway._BlitzGateway
08:36:24 (developers/Web/WebGateway: line 15) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/omeroweb/omeroweb.webgateway.html#module-omeroweb.webgateway.urls - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/omeroweb/omeroweb.webgateway.html#module-omeroweb.webgateway.urls
08:36:24 (developers/PythonBlitzGateway: line 123) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/omero/omero.gateway.html#omero.gateway._BlitzGateway._createProxies - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/omero/omero.gateway.html#omero.gateway._BlitzGateway._createProxies
08:36:24 (developers/GettingStarted/AdvancedClientDevelopment: line 477) ok https://downloads.openmicroscopy.org/presentations/2017/Team-Training/Hibernate/
08:36:24 (sysadmins/server-ldap: line 322) ok https://en.wikipedia.org/wiki/Active_Directory
08:36:24 (developers/Server/Aop: line 86) ok https://en.wikipedia.org/wiki/Aspect-oriented_programming
08:36:24 (developers/Server/HowToCreateAService: line 101) redirect https://docs.spring.io/spring/docs/2.0.x/reference/beans.html#beans-factory-scopes-singleton - permanently to https://docs.spring.io/spring-framework/docs/2.0.x/reference/beans.html#beans-factory-scopes-singleton
08:36:24 (developers/GettingStarted/AdvancedClientDevelopment: line 56) ok https://en.wikipedia.org/wiki/Fallacies_of_Distributed_Computing
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08:36:24 (sysadmins/in-place-import: line 288) ok https://en.wikipedia.org/wiki/Hard_link
08:36:24 (developers/Model/Units: line 185) ok https://en.wikipedia.org/wiki/International_System_of_Units
08:36:24 (sysadmins/server-backup-and-restore: line 216) ok https://en.wikipedia.org/wiki/List_of_backup_software
08:36:24 (sysadmins/server-ldap: line 4) ok https://en.wikipedia.org/wiki/Lightweight_Directory_Access_Protocol
08:36:24 (sysadmins/config: line 2835) ok https://en.wikipedia.org/wiki/List_of_tz_database_time_zones
08:36:24 (developers/Model/Units: line 184) ok https://en.wikipedia.org/wiki/System_of_measurement
08:36:24 (sysadmins/server-syslog: line 4) ok https://en.wikipedia.org/wiki/Syslog
08:36:24 (developers/Model/Units: line 183) ok https://en.wikipedia.org/wiki/Units_of_measurement
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08:36:25 (sysadmins/system-migration: line 39) ok https://forum.image.sc/tag/omero
08:36:25 (sysadmins/python3-migration: line 52) ok https://galaxy.ansible.com/ome
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08:36:25 (sysadmins/system-migration: line 33) ok https://galaxy.ansible.com/ui/standalone/roles/ome/omero_server/
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08:36:25 (sysadmins/python3-migration: line 62) redirect https://forum.image.sc/c/data - permanently to https://forum.image.sc/c/data-management/29
08:36:26 (developers/Server/Aop: line 25) redirect https://eclipse.org/aspectj/ - permanently to https://eclipse.dev/aspectj/
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08:36:26 (sysadmins/limitations: line 61) ok https://github.com/BIOP/ijp-kheops
08:36:26 ( developers/Web: line 73) ok https://github.com/German-BioImaging/omero-autotag
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08:36:26 (developers/Tables: line 18) ok https://github.com/PyTables/PyTables/releases/tag/v3.9.1
08:36:27 (developers/Python: line 60) ok https://github.com/TheJacksonLaboratory/ezomero
08:36:27 (developers/scripts/index: line 55) ok https://github.com/QBI-Microscopy/omero-user-scripts
08:36:27 (developers/scripts/index: line 53) ok https://github.com/aherbert/omero-user-scripts
08:36:27 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 173) ok https://github.com/adamchainz/django-cors-headers
08:36:27 (developers/scripts/index: line 57) ok https://github.com/dsudar/OMEROscripts
08:36:27 (sysadmins/server-upgrade: line 75) redirect https://github.com/glencoesoftware/omero-ms-image-region/tree/v0.5.1/src/dist/MemoFileRegenerationReadMe.md - permanently to https://github.com/glencoesoftware/omero-ms-image-region/blob/v0.5.1/src/dist/MemoFileRegenerationReadMe.md
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08:36:27 (developers/Python: line 21) redirect https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl - with Found to https://objects.githubusercontent.com/github-production-release-asset-2e65be/543662060/9ce94eef-3ec3-4651-a4ac-af4ecb7b5d87?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=releaseassetproduction%2F20240822%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20240822T083627Z&X-Amz-Expires=300&X-Amz-Signature=2ee68fa1025e3bd19f7bd150d32a0135784cff7482e365d6459792fb5a778409&X-Amz-SignedHeaders=host&actor_id=0&key_id=0&repo_id=543662060&response-content-disposition=attachment%3B%20filename%3Dzeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl&response-content-type=application%2Foctet-stream
08:36:28 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 105) ok https://github.com/jazzband/django-redis/
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08:36:28 (sysadmins/unix/server-install-homebrew: line 382) redirect https://github.com/mxcl/homebrew/wiki/Bug-Fixing-Checklist - with Found to https://github.com/Homebrew/legacy-homebrew
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08:36:29 (sysadmins/server-setup-examples: line 125) ok https://idr.openmicroscopy.org
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08:36:29 (sysadmins/public: line 244) ok https://nginx.org/
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08:36:30 ( index: line 29) ok https://omero-guides.readthedocs.io/en/latest/
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08:36:30 (sysadmins/public: line 128) redirect https://omero.lifesci.dundee.ac.uk/pub/schleicher-et-al-2017 - with Found to https://omero.lifesci.dundee.ac.uk/webclient/login/?url=%2Fwebclient%2F%3Fshow%3Dproject-27936
08:36:30 (sysadmins/restricted-admins: line 191) ok https://omero-guides.readthedocs.io/en/latest/upload/docs/import-desktop-client.html#import-for-another-user
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08:36:30 (sysadmins/public: line 214) redirect https://omero.lifesci.dundee.ac.uk/webclient/?show=tag-364188 - with Found to https://omero.lifesci.dundee.ac.uk/webclient/login/?url=%2Fwebclient%2F%3Fshow%3Dtag-364188
08:36:31 (developers/index: line 131) ok https://omero-insight.readthedocs.io/en/latest/
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08:36:31 (developers/Web/CreateApp: line 35) ok https://omero.readthedocs.io/en/latest/developers/Python.html
08:36:31 (developers/Search/FileParsers: line 24) ok https://pdfbox.apache.org
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08:36:31 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 344) ok https://pypi.org/project/futures
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08:36:34 (sysadmins/system-requirements: line 56) ok https://www.cpubenchmark.net/singleThread.html#server-thread
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08:36:35 (sysadmins/unix/server-installation: line 472) ok https://www.openmicroscopy.org/community/viewtopic.php?f=5&t=360#p922
08:36:35 (sysadmins/server-upgrade: line 256) ok https://www.openmicroscopy.org/community/viewtopic.php?f=5&t=7778
08:36:35 (sysadmins/troubleshooting: line 284) ok https://www.openmicroscopy.org/community/viewtopic.php?f=6&t=7722&p=15264&hilit=CheckedPath#p15264
08:36:35 ( users/index: line 59) ok https://www.openmicroscopy.org/explore/
08:36:36 (users/clients-overview: line 28) ok https://www.openmicroscopy.org/omero/analyze
08:36:36 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 77) ok https://www.openmicroscopy.org/omero/apps/
08:36:36 (developers/Matlab: line 12) ok https://www.openmicroscopy.org/omero/downloads/
08:36:36 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 77) ok https://www.openmicroscopy.org/omero/figure/
08:36:36 (sysadmins/public: line 97) ok https://www.openmicroscopy.org/omero/iviewer/
08:36:36 ( users/index: line 54) ok https://www.openmicroscopy.org/omero/new
08:36:36 ( users/index: line 54) ok https://www.openmicroscopy.org/omero/scientists
08:36:36 (sysadmins/server-security: line 21) ok https://www.openmicroscopy.org/security/
08:36:36 ( index: line 28) ok https://www.openmicroscopy.org/security/advisories/
08:36:36 ( users/history: line 1758) ok https://www.openmicroscopy.org/security/advisories/2012-SV1-ldap-authentication
08:36:36 ( users/history: line 1590) ok https://www.openmicroscopy.org/security/advisories/2014-SV1-unicode-passwords
08:36:36 ( users/history: line 1591) ok https://www.openmicroscopy.org/security/advisories/2014-SV2-empty-passwords
08:36:36 ( users/history: line 1551) ok https://www.openmicroscopy.org/security/advisories/2014-SV3-csrf
08:36:36 ( users/history: line 1552) ok https://www.openmicroscopy.org/security/advisories/2014-SV4-poodle
08:36:36 ( users/history: line 1096) ok https://www.openmicroscopy.org/security/advisories/2016-SV1-cleanse
08:36:36 ( users/history: line 1081) ok https://www.openmicroscopy.org/security/advisories/2016-SV2-share
08:36:36 ( users/history: line 1034) ok https://www.openmicroscopy.org/security/advisories/2017-SV1-filename
08:36:36 ( users/history: line 1038) ok https://www.openmicroscopy.org/security/advisories/2017-SV2-edit-rw
08:36:36 ( users/history: line 1041) ok https://www.openmicroscopy.org/security/advisories/2017-SV3-delete-script
08:36:36 ( users/history: line 860) ok https://www.openmicroscopy.org/security/advisories/2017-SV4-guest-user
08:36:36 (sysadmins/server-security: line 31) ok https://www.iana.org/assignments/service-names-port-numbers/service-names-port-numbers.xml
08:36:36 (sysadmins/server-upgrade: line 135) ok https://www.openmicroscopy.org/security/advisories/2017-SV5-filename-2
08:36:36 (developers/Modules/Api: line 28) ok https://www.openmicroscopy.org/support/
08:36:36 ( users/history: line 645) ok https://www.openmicroscopy.org/security/advisories/2017-SV6-job-file-link
08:36:36 (sysadmins/version-requirements: line 395) ok https://www.oracle.com/technetwork/java/eol-135779.html
08:36:36 (sysadmins/in-place-import: line 292) ok https://www.openwall.com/lists/kernel-hardening/2012/02/21/20
08:36:36 (sysadmins/server-backup-and-restore: line 162) redirect https://www.nongnu.org/rdiff-backup/docs.html - with Found to https://rdiff-backup.net/
08:36:36 (sysadmins/version-requirements: line 446) redirect https://www.oracle.com/technetwork/java/javase/downloads/index-jsp-138363.html - permanently to https://www.oracle.com/java/technologies/downloads/?er=221886
08:36:36 (sysadmins/unix/server-installation: line 124) redirect https://www.oracle.com/technetwork/java/javase/downloads/index.html - permanently to https://www.oracle.com/java/technologies/downloads/?er=221886
08:36:36 (developers/Web/LinkingFromWebclient: line 86) ok https://www.ncbi.nlm.nih.gov/protein/000397
08:36:36 (developers/Server/ExtendingOmero: line 6) redirect https://www.openmicroscopy.org/forums - permanently to https://forum.image.sc/c/data-management/29
08:36:36 (sysadmins/server-backup-and-restore: line 112) ok https://www.postgresql.org/docs/10/backup.html
08:36:37 (sysadmins/unix/server-postgresql: line 143) redirect https://www.postgresql.org/docs/current/interactive/runtime-config-connection.html - permanently to https://www.postgresql.org/docs/current/runtime-config-connection.html
08:36:37 (sysadmins/unix/server-postgresql: line 140) redirect https://www.postgresql.org/docs/current/interactive/index.html - permanently to https://www.postgresql.org/docs/current/index.html
08:36:37 (sysadmins/unix/server-postgresql: line 145) redirect https://www.postgresql.org/docs/current/interactive/client-authentication.html - permanently to https://www.postgresql.org/docs/current/client-authentication.html
08:36:37 ( users/cli/index: line 4) ok https://www.python.org
08:36:37 (developers/Server: line 32) redirect https://www.oracle.com/technetwork/java/javaee/ejb/index.html - permanently to https://www.oracle.com/java/technologies/enterprise-javabeans-technology.html
08:36:37 (developers/GettingStarted: line 126) ok https://www.pgadmin.org/
08:36:37 (sysadmins/version-requirements: line 264) ok https://www.postgresql.org/download/
08:36:37 (sysadmins/unix/server-postgresql: line 12) ok https://www.postgresql.org/support/versioning/
08:36:37 (sysadmins/version-requirements: line 288) redirect https://www.python.org/dev/peps/pep-0494/ - with Found to https://peps.python.org/pep-0494/
08:36:37 (developers/Web/CSRF: line 14) ok https://www.rfc-editor.org/rfc/rfc2616.html#section-9.1.1
08:36:37 (sysadmins/config: line 1446) ok https://www.quartz-scheduler.org/api/1.8.6/org/quartz/CronExpression.html
08:36:37 (sysadmins/version-requirements: line 293) redirect https://www.python.org/dev/peps/pep-0537/ - with Found to https://peps.python.org/pep-0537/
08:36:37 (sysadmins/omeromovie: line 36) redirect https://www.scipy.org/install.html - permanently to https://scipy.org/install/
08:36:37 (sysadmins/server-syslog: line 52) ok https://www.splunk.com/
08:36:37 (sysadmins/config: line 2395) ok https://www.w3.org/TR/referrer-policy/#referrer-policies
08:36:37 (developers/logging: line 4) ok https://www.slf4j.org
08:36:37 (developers/GettingStarted/AdvancedClientDevelopment: line 19) ok https://www.scons.org
08:36:38 (sysadmins/version-requirements: line 254) redirect https://yum.postgresql.org/14/redhat/rhel-9-x86_64/ - permanently to https://download.postgresql.org/pub/repos/yum/14/redhat/rhel-9-x86_64/
08:36:38 (sysadmins/version-requirements: line 257) redirect https://yum.postgresql.org/15/redhat/rhel-9-x86_64/ - permanently to https://download.postgresql.org/pub/repos/yum/15/redhat/rhel-9-x86_64/
08:36:38 (sysadmins/version-requirements: line 260) redirect https://yum.postgresql.org/16/redhat/rhel-9-x86_64/ - permanently to https://download.postgresql.org/pub/repos/yum/16/redhat/rhel-9-x86_64/
08:37:07 ( developers/Cpp: line 4) ok https://zeroc.com
08:37:08 (developers/Python: line 7) ok https://zeroc.com/ice/downloads/3.6
08:37:38 (sysadmins/unix/server-installation: line 190) broken https://zeroc.com/downloads/ice - 504 Server Error: Gateway Time-out for url: https://zeroc.com/downloads/ice
08:37:38 ( developers/Web: line 29) broken https://zeroc.com/products/ice - 504 Server Error: Gateway Time-out for url: https://zeroc.com/products/ice
08:37:38 Adding redirects:
08:37:38 build finished with problems.
08:37:38 make: *** [../Makefile:159: linkcheck] Error 1
08:37:38 Build step 'Execute shell' marked build as failure
08:37:38 Archiving artifacts
08:37:39 Finished: FAILURE
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