07:45:08 Started by user devspace 07:45:08 Running as SYSTEM 07:45:08 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-docs 07:45:08 The recommended git tool is: NONE 07:45:08 No credentials specified 07:45:08 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-docs/.git # timeout=10 07:45:08 Fetching changes from the remote Git repository 07:45:08 > git config remote.origin.url https://github.com/ome/ome-documentation # timeout=10 07:45:08 Fetching upstream changes from https://github.com/ome/ome-documentation 07:45:08 > git --version # timeout=10 07:45:08 > git --version # 'git version 2.39.3' 07:45:08 > git fetch --tags --force --progress -- https://github.com/ome/ome-documentation +refs/heads/*:refs/remotes/origin/* # timeout=10 07:45:08 > git rev-parse origin/develop^{commit} # timeout=10 07:45:08 Checking out Revision bb7f3b28bda33cd5573189045c149f190a05f9a7 (origin/develop) 07:45:08 > git config core.sparsecheckout # timeout=10 07:45:08 > git checkout -f bb7f3b28bda33cd5573189045c149f190a05f9a7 # timeout=10 07:45:08 Commit message: "Merge pull request #2382 from jburel/migration" 07:45:08 > git rev-list --no-walk bb7f3b28bda33cd5573189045c149f190a05f9a7 # timeout=10 07:45:08 Cleaning workspace 07:45:08 > git rev-parse --verify HEAD # timeout=10 07:45:08 Resetting working tree 07:45:08 > git reset --hard # timeout=10 07:45:09 > git clean -fdx # timeout=10 07:45:09 [OMERO-docs] $ /bin/bash -xe /tmp/jenkins6600604818159640894.sh 07:45:09 + python3 -mvenv venv 07:45:12 + source /home/omero/workspace/OMERO-docs/venv/bin/activate 07:45:12 ++ deactivate nondestructive 07:45:12 ++ '[' -n '' ']' 07:45:12 ++ '[' -n '' ']' 07:45:12 ++ '[' -n /bin/bash -o -n '' ']' 07:45:12 ++ hash -r 07:45:12 ++ '[' -n '' ']' 07:45:12 ++ unset VIRTUAL_ENV 07:45:12 ++ '[' '!' nondestructive = nondestructive ']' 07:45:12 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-docs/venv 07:45:12 ++ export VIRTUAL_ENV 07:45:12 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 07:45:12 ++ PATH=/home/omero/workspace/OMERO-docs/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 07:45:12 ++ export PATH 07:45:12 ++ '[' -n '' ']' 07:45:12 ++ '[' -z '' ']' 07:45:12 ++ _OLD_VIRTUAL_PS1= 07:45:12 ++ PS1='(venv) ' 07:45:12 ++ export PS1 07:45:12 ++ '[' -n /bin/bash -o -n '' ']' 07:45:12 ++ hash -r 07:45:12 + pip install -U pip 07:45:12 Requirement already satisfied: pip in ./venv/lib/python3.9/site-packages (21.2.3) 07:45:12 Collecting pip 07:45:12 Using cached pip-24.0-py3-none-any.whl (2.1 MB) 07:45:12 Installing collected packages: pip 07:45:13 Attempting uninstall: pip 07:45:13 Found existing installation: pip 21.2.3 07:45:13 Uninstalling pip-21.2.3: 07:45:13 Successfully uninstalled pip-21.2.3 07:45:14 Successfully installed pip-24.0 07:45:14 + pip install -U scc 07:45:15 Collecting scc 07:45:15 Using cached scc-0.19.1-py3-none-any.whl.metadata (3.6 kB) 07:45:15 Collecting PyGithub>=1.54 (from scc) 07:45:15 Using cached PyGithub-2.2.0-py3-none-any.whl.metadata (3.8 kB) 07:45:15 Collecting PyYAML>=5.1 (from scc) 07:45:15 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) 07:45:15 Collecting future (from scc) 07:45:15 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) 07:45:15 Collecting ruamel.yaml (from scc) 07:45:15 Using cached ruamel.yaml-0.18.6-py3-none-any.whl.metadata (23 kB) 07:45:15 Collecting ruamel.yaml.jinja2 (from scc) 07:45:15 Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB) 07:45:15 Collecting six (from scc) 07:45:15 Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB) 07:45:16 Collecting urllib3<2 (from scc) 07:45:16 Using cached urllib3-1.26.18-py2.py3-none-any.whl.metadata (48 kB) 07:45:16 Collecting yaclifw<0.3,>=0.2.0 (from scc) 07:45:16 Using cached yaclifw-0.2.0-py3-none-any.whl 07:45:16 Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc) 07:45:16 Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl.metadata (8.6 kB) 07:45:16 Collecting requests>=2.14.0 (from PyGithub>=1.54->scc) 07:45:16 Using cached requests-2.31.0-py3-none-any.whl.metadata (4.6 kB) 07:45:16 Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) 07:45:16 Using cached PyJWT-2.8.0-py3-none-any.whl.metadata (4.2 kB) 07:45:19 Collecting typing-extensions>=4.0.0 (from PyGithub>=1.54->scc) 07:45:19 Using cached typing_extensions-4.10.0-py3-none-any.whl.metadata (3.0 kB) 07:45:19 Collecting Deprecated (from PyGithub>=1.54->scc) 07:45:19 Using cached Deprecated-1.2.14-py2.py3-none-any.whl.metadata (5.4 kB) 07:45:19 Collecting ruamel.yaml.clib>=0.2.7 (from ruamel.yaml->scc) 07:45:19 Using cached ruamel.yaml.clib-0.2.8-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl.metadata (2.2 kB) 07:45:20 Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) 07:45:20 Using cached cryptography-42.0.5-cp39-abi3-manylinux_2_28_x86_64.whl.metadata (5.3 kB) 07:45:20 Collecting cffi>=1.4.1 (from pynacl>=1.4.0->PyGithub>=1.54->scc) 07:45:20 Using cached cffi-1.16.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (1.5 kB) 07:45:20 Collecting charset-normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc) 07:45:20 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB) 07:45:20 Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc) 07:45:20 Using cached idna-3.6-py3-none-any.whl.metadata (9.9 kB) 07:45:20 Collecting certifi>=2017.4.17 (from requests>=2.14.0->PyGithub>=1.54->scc) 07:45:20 Using cached certifi-2024.2.2-py3-none-any.whl.metadata (2.2 kB) 07:45:20 Collecting wrapt<2,>=1.10 (from Deprecated->PyGithub>=1.54->scc) 07:45:20 Using cached wrapt-1.16.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB) 07:45:20 Collecting pycparser (from cffi>=1.4.1->pynacl>=1.4.0->PyGithub>=1.54->scc) 07:45:20 Using cached pycparser-2.21-py2.py3-none-any.whl.metadata (1.1 kB) 07:45:20 Using cached scc-0.19.1-py3-none-any.whl (48 kB) 07:45:20 Using cached PyGithub-2.2.0-py3-none-any.whl (350 kB) 07:45:20 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB) 07:45:20 Using cached urllib3-1.26.18-py2.py3-none-any.whl (143 kB) 07:45:20 Using cached future-1.0.0-py3-none-any.whl (491 kB) 07:45:20 Using cached ruamel.yaml-0.18.6-py3-none-any.whl (117 kB) 07:45:20 Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB) 07:45:20 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB) 07:45:20 Using cached PyJWT-2.8.0-py3-none-any.whl (22 kB) 07:45:20 Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (856 kB) 07:45:20 Using cached requests-2.31.0-py3-none-any.whl (62 kB) 07:45:20 Using cached ruamel.yaml.clib-0.2.8-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl (562 kB) 07:45:20 Using cached typing_extensions-4.10.0-py3-none-any.whl (33 kB) 07:45:20 Using cached Deprecated-1.2.14-py2.py3-none-any.whl (9.6 kB) 07:45:20 Using cached certifi-2024.2.2-py3-none-any.whl (163 kB) 07:45:20 Using cached cffi-1.16.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (443 kB) 07:45:20 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB) 07:45:20 Using cached cryptography-42.0.5-cp39-abi3-manylinux_2_28_x86_64.whl (4.6 MB) 07:45:20 Using cached idna-3.6-py3-none-any.whl (61 kB) 07:45:20 Using cached wrapt-1.16.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (80 kB) 07:45:20 Using cached pycparser-2.21-py2.py3-none-any.whl (118 kB) 07:45:21 Installing collected packages: wrapt, urllib3, typing-extensions, six, ruamel.yaml.clib, PyYAML, pyjwt, pycparser, idna, future, charset-normalizer, certifi, yaclifw, ruamel.yaml, requests, Deprecated, cffi, ruamel.yaml.jinja2, pynacl, cryptography, PyGithub, scc 07:45:22 Successfully installed Deprecated-1.2.14 PyGithub-2.2.0 PyYAML-6.0.1 certifi-2024.2.2 cffi-1.16.0 charset-normalizer-3.3.2 cryptography-42.0.5 future-1.0.0 idna-3.6 pycparser-2.21 pyjwt-2.8.0 pynacl-1.5.0 requests-2.31.0 ruamel.yaml-0.18.6 ruamel.yaml.clib-0.2.8 ruamel.yaml.jinja2-0.2.7 scc-0.19.1 six-1.16.0 typing-extensions-4.10.0 urllib3-1.26.18 wrapt-1.16.0 yaclifw-0.2.0 07:45:22 + test -e src 07:45:22 + scc merge develop --no-ask --reset --comment -S success-only --push merge_ci 07:45:24 Following Github server redirection from /repos/ome/ome-documentation to /repositories/3198415 07:45:24 2024-03-21 07:45:24,803 [github.Reque] INFO Following Github server redirection from /repos/ome/ome-documentation to /repositories/3198415 07:45:26 2024-03-21 07:45:26,845 [ scc.merge] INFO Merging Pull Request(s) based on develop 07:45:26 2024-03-21 07:45:26,845 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 07:45:26 2024-03-21 07:45:26,845 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 07:45:26 2024-03-21 07:45:26,845 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 07:45:26 2024-03-21 07:45:26,846 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 07:45:26 2024-03-21 07:45:26,846 [ scc.merge] INFO Excluding Pull Request(s) without successful status 07:45:51 2024-03-21 07:45:51,116 [ scc.merge] INFO Repository: ome/ome-documentation 07:45:51 2024-03-21 07:45:51,116 [ scc.merge] INFO Excluded PRs: 07:45:51 2024-03-21 07:45:51,116 [ scc.merge] INFO - PR 2393 bernt-matthias 'fix option capitalization' (user: bernt-matthias) 07:45:51 2024-03-21 07:45:51,116 [ scc.merge] INFO - PR 2357 fmeyenhofer 'Add a OMERO.table visualisation example' (user: fmeyenhofer) 07:45:51 2024-03-21 07:45:51,116 [ scc.merge] INFO - PR 2347 jburel 'pin version to match rtd ones' (exclude comment) 07:45:51 2024-03-21 07:45:51,116 [ scc.merge] INFO - PR 2298 pwalczysko 'test' (exclude comment) 07:45:51 2024-03-21 07:45:51,116 [ scc.merge] INFO Already up to date. 07:45:51 2024-03-21 07:45:51,116 [ scc.merge] INFO 07:45:51 2024-03-21 07:45:51,116 [ scc.merge] INFO Merged PRs: 07:45:51 2024-03-21 07:45:51,116 [ scc.merge] INFO - PR 2291 pwalczysko 'Add ansible and docker install doc - former "install.rst"' 07:45:51 2024-03-21 07:45:51,116 [ scc.merge] INFO - PR 2353 jburel 'Mencoder' 07:45:51 2024-03-21 07:45:51,116 [ scc.merge] INFO - PR 2355 will-moore 'Update python Tables code to use 'Image' column' 07:45:51 2024-03-21 07:45:51,116 [ scc.merge] INFO - PR 2396 will-moore 'Web createapp use cookiecutter' 07:45:51 2024-03-21 07:45:51,116 [ scc.merge] INFO - PR 2403 snoopycrimecop 'Changes from upstream repositories: openmicroscopy' 07:45:51 2024-03-21 07:45:51,116 [ scc.merge] INFO 07:45:53 2024-03-21 07:45:53,926 [ scc.merge] INFO Merged branch pushed to https://github.com/snoopycrimecop/ome-documentation/tree/merge_ci 07:45:54 [OMERO-docs] $ /bin/bash -xe /tmp/jenkins1653147201839966374.sh 07:45:54 + source /home/omero/workspace/OMERO-docs/venv/bin/activate 07:45:54 ++ deactivate nondestructive 07:45:54 ++ '[' -n '' ']' 07:45:54 ++ '[' -n '' ']' 07:45:54 ++ '[' -n /bin/bash -o -n '' ']' 07:45:54 ++ hash -r 07:45:54 ++ '[' -n '' ']' 07:45:54 ++ unset VIRTUAL_ENV 07:45:54 ++ '[' '!' nondestructive = nondestructive ']' 07:45:54 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-docs/venv 07:45:54 ++ export VIRTUAL_ENV 07:45:54 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 07:45:54 ++ PATH=/home/omero/workspace/OMERO-docs/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 07:45:54 ++ export PATH 07:45:54 ++ '[' -n '' ']' 07:45:54 ++ '[' -z '' ']' 07:45:54 ++ _OLD_VIRTUAL_PS1= 07:45:54 ++ PS1='(venv) ' 07:45:54 ++ export PS1 07:45:54 ++ '[' -n /bin/bash -o -n '' ']' 07:45:54 ++ hash -r 07:45:54 + pip install -r requirements.txt 07:45:54 Collecting Sphinx (from -r requirements.txt (line 1)) 07:45:54 Using cached sphinx-7.2.6-py3-none-any.whl.metadata (5.9 kB) 07:45:54 Collecting sphinx-rtd-theme (from -r requirements.txt (line 2)) 07:45:54 Using cached sphinx_rtd_theme-2.0.0-py2.py3-none-any.whl.metadata (4.4 kB) 07:45:54 Collecting sphinxcontrib-applehelp (from Sphinx->-r requirements.txt (line 1)) 07:45:54 Using cached sphinxcontrib_applehelp-1.0.8-py3-none-any.whl.metadata (2.3 kB) 07:45:54 Collecting sphinxcontrib-devhelp (from Sphinx->-r requirements.txt (line 1)) 07:45:54 Using cached sphinxcontrib_devhelp-1.0.6-py3-none-any.whl.metadata (2.3 kB) 07:45:54 Collecting sphinxcontrib-jsmath (from Sphinx->-r requirements.txt (line 1)) 07:45:54 Using cached sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl.metadata (1.4 kB) 07:45:54 Collecting sphinxcontrib-htmlhelp>=2.0.0 (from Sphinx->-r requirements.txt (line 1)) 07:45:54 Using cached sphinxcontrib_htmlhelp-2.0.5-py3-none-any.whl.metadata (2.3 kB) 07:45:54 Collecting sphinxcontrib-serializinghtml>=1.1.9 (from Sphinx->-r requirements.txt (line 1)) 07:45:54 Using cached sphinxcontrib_serializinghtml-1.1.10-py3-none-any.whl.metadata (2.4 kB) 07:45:54 Collecting sphinxcontrib-qthelp (from Sphinx->-r requirements.txt (line 1)) 07:45:54 Using cached sphinxcontrib_qthelp-1.0.7-py3-none-any.whl.metadata (2.2 kB) 07:45:55 Collecting Jinja2>=3.0 (from Sphinx->-r requirements.txt (line 1)) 07:45:55 Using cached Jinja2-3.1.3-py3-none-any.whl.metadata (3.3 kB) 07:45:55 Collecting Pygments>=2.14 (from Sphinx->-r requirements.txt (line 1)) 07:45:55 Using cached pygments-2.17.2-py3-none-any.whl.metadata (2.6 kB) 07:45:55 Collecting docutils<0.21,>=0.18.1 (from Sphinx->-r requirements.txt (line 1)) 07:45:55 Using cached docutils-0.20.1-py3-none-any.whl.metadata (2.8 kB) 07:45:55 Collecting snowballstemmer>=2.0 (from Sphinx->-r requirements.txt (line 1)) 07:45:55 Using cached snowballstemmer-2.2.0-py2.py3-none-any.whl.metadata (6.5 kB) 07:45:55 Collecting babel>=2.9 (from Sphinx->-r requirements.txt (line 1)) 07:45:55 Using cached Babel-2.14.0-py3-none-any.whl.metadata (1.6 kB) 07:45:55 Collecting alabaster<0.8,>=0.7 (from Sphinx->-r requirements.txt (line 1)) 07:45:55 Using cached alabaster-0.7.16-py3-none-any.whl.metadata (2.9 kB) 07:45:55 Collecting imagesize>=1.3 (from Sphinx->-r requirements.txt (line 1)) 07:45:55 Using cached imagesize-1.4.1-py2.py3-none-any.whl.metadata (1.5 kB) 07:45:55 Requirement already satisfied: requests>=2.25.0 in ./venv/lib/python3.9/site-packages (from Sphinx->-r requirements.txt (line 1)) (2.31.0) 07:45:55 Collecting packaging>=21.0 (from Sphinx->-r requirements.txt (line 1)) 07:45:55 Using cached packaging-24.0-py3-none-any.whl.metadata (3.2 kB) 07:45:55 Collecting importlib-metadata>=4.8 (from Sphinx->-r requirements.txt (line 1)) 07:45:55 Using cached importlib_metadata-7.1.0-py3-none-any.whl.metadata (4.7 kB) 07:45:55 Collecting sphinxcontrib-jquery<5,>=4 (from sphinx-rtd-theme->-r requirements.txt (line 2)) 07:45:55 Using cached sphinxcontrib_jquery-4.1-py2.py3-none-any.whl.metadata (2.6 kB) 07:45:55 Collecting zipp>=0.5 (from importlib-metadata>=4.8->Sphinx->-r requirements.txt (line 1)) 07:45:55 Using cached zipp-3.18.1-py3-none-any.whl.metadata (3.5 kB) 07:45:55 Collecting MarkupSafe>=2.0 (from Jinja2>=3.0->Sphinx->-r requirements.txt (line 1)) 07:45:55 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB) 07:45:55 Requirement already satisfied: charset-normalizer<4,>=2 in ./venv/lib/python3.9/site-packages (from requests>=2.25.0->Sphinx->-r requirements.txt (line 1)) (3.3.2) 07:45:55 Requirement already satisfied: idna<4,>=2.5 in ./venv/lib/python3.9/site-packages (from requests>=2.25.0->Sphinx->-r requirements.txt (line 1)) (3.6) 07:45:55 Requirement already satisfied: urllib3<3,>=1.21.1 in ./venv/lib/python3.9/site-packages (from requests>=2.25.0->Sphinx->-r requirements.txt (line 1)) (1.26.18) 07:45:55 Requirement already satisfied: certifi>=2017.4.17 in ./venv/lib/python3.9/site-packages (from requests>=2.25.0->Sphinx->-r requirements.txt (line 1)) (2024.2.2) 07:45:56 Using cached sphinx-7.2.6-py3-none-any.whl (3.2 MB) 07:45:56 Using cached sphinx_rtd_theme-2.0.0-py2.py3-none-any.whl (2.8 MB) 07:45:56 Using cached alabaster-0.7.16-py3-none-any.whl (13 kB) 07:45:56 Using cached Babel-2.14.0-py3-none-any.whl (11.0 MB) 07:45:56 Using cached docutils-0.20.1-py3-none-any.whl (572 kB) 07:45:56 Using cached imagesize-1.4.1-py2.py3-none-any.whl (8.8 kB) 07:45:56 Using cached importlib_metadata-7.1.0-py3-none-any.whl (24 kB) 07:45:56 Using cached Jinja2-3.1.3-py3-none-any.whl (133 kB) 07:45:56 Using cached packaging-24.0-py3-none-any.whl (53 kB) 07:45:56 Using cached pygments-2.17.2-py3-none-any.whl (1.2 MB) 07:45:56 Using cached snowballstemmer-2.2.0-py2.py3-none-any.whl (93 kB) 07:45:56 Using cached sphinxcontrib_htmlhelp-2.0.5-py3-none-any.whl (99 kB) 07:45:56 Using cached sphinxcontrib_jquery-4.1-py2.py3-none-any.whl (121 kB) 07:45:56 Using cached sphinxcontrib_serializinghtml-1.1.10-py3-none-any.whl (92 kB) 07:45:56 Using cached sphinxcontrib_applehelp-1.0.8-py3-none-any.whl (120 kB) 07:45:56 Using cached sphinxcontrib_devhelp-1.0.6-py3-none-any.whl (83 kB) 07:45:56 Using cached sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl (5.1 kB) 07:45:56 Using cached sphinxcontrib_qthelp-1.0.7-py3-none-any.whl (89 kB) 07:45:56 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB) 07:45:56 Using cached zipp-3.18.1-py3-none-any.whl (8.2 kB) 07:45:56 Installing collected packages: snowballstemmer, zipp, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, Pygments, packaging, MarkupSafe, imagesize, docutils, babel, alabaster, Jinja2, importlib-metadata, Sphinx, sphinxcontrib-jquery, sphinx-rtd-theme 07:46:00 Successfully installed Jinja2-3.1.3 MarkupSafe-2.1.5 Pygments-2.17.2 Sphinx-7.2.6 alabaster-0.7.16 babel-2.14.0 docutils-0.20.1 imagesize-1.4.1 importlib-metadata-7.1.0 packaging-24.0 snowballstemmer-2.2.0 sphinx-rtd-theme-2.0.0 sphinxcontrib-applehelp-1.0.8 sphinxcontrib-devhelp-1.0.6 sphinxcontrib-htmlhelp-2.0.5 sphinxcontrib-jquery-4.1 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-1.0.7 sphinxcontrib-serializinghtml-1.1.10 zipp-3.18.1 07:46:00 + cd omero 07:46:00 + make clean html linkcheck 07:46:00 rm -rf _build/* 07:46:00 sphinx-build -b html -d _build/doctrees . _build/html 07:46:00 Running Sphinx v7.2.6 07:46:00 making output directory... done 07:46:00 building [mo]: targets for 0 po files that are out of date 07:46:00 writing output... 07:46:00 building [html]: targets for 163 source files that are out of date 07:46:00 updating environment: [new config] 163 added, 0 changed, 0 removed 07:46:00 reading sources... 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Use "pathlib.Path" or "os.fspath" instead. 07:46:31 src_path = app.srcdir + '/' + html_src_path 07:46:31 Adding redirects: 07:46:31 sysadmins/unix/install-web/walkthrough/omeroweb-install-ubuntu1804-ice3.6.html 07:46:31 sysadmins/unix/server-ubuntu1804-ice36.html 07:46:31 sysadmins/unix/install-web/walkthrough/omeroweb-install-debian9-ice3.6.html 07:46:31 sysadmins/unix/server-debian9-ice36.html 07:46:31 sysadmins/unix/install-web/walkthrough/omeroweb-install-centos8-ice3.6.html 07:46:31 sysadmins/unix/server-centos8-ice36.html 07:46:31 sysadmins/server-overview.html 07:46:31 sysadmins/server-tables.html 07:46:31 sysadmins/omero-home-prefix.html 07:46:31 developers/Insight/Architecture.html 07:46:31 developers/Insight/Configuration.html 07:46:31 developers/Insight/DirectoryContents.html 07:46:31 developers/Insight/EventBus.html 07:46:31 developers/Insight/HowTo/BuildAgent.html 07:46:31 developers/Insight/HowTo/BuildAgentView.html 07:46:31 developers/Insight/HowTo/RetrieveData.html 07:46:31 developers/Insight/ImplementationView.html 07:46:31 developers/Insight/TaskBar.html 07:46:31 build succeeded. 07:46:31 07:46:31 The HTML pages are in _build/html. 07:46:32 07:46:32 Build finished. The HTML pages are in _build/html. 07:46:32 sphinx-build -b linkcheck -d _build/doctrees . _build/linkcheck 07:46:32 Running Sphinx v7.2.6 07:46:32 making output directory... done 07:46:32 loading pickled environment... done 07:46:33 building [mo]: targets for 0 po files that are out of date 07:46:33 writing output... 07:46:33 building [linkcheck]: targets for 163 source files that are out of date 07:46:33 updating environment: 0 added, 0 changed, 0 removed 07:46:33 reading sources... 07:46:33 looking for now-outdated files... none found 07:46:33 preparing documents... done 07:46:33 copying assets... done 07:46:33 writing output... [ 1%] developers/Clients/ImportLibrary writing output... [ 1%] developers/Cpp writing output... [ 2%] developers/GettingStarted writing output... [ 2%] developers/GettingStarted/AdvancedClientDevelopment writing output... [ 3%] developers/ImportFS writing output... [ 4%] developers/Java writing output... [ 4%] developers/Matlab writing output... 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https://ome-model.readthedocs.io/en/stable/omero-pyramid/ 07:46:55 (developers/Server/GraphsImpl: line 48) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/javadoc/omero/cmd/graphs/BaseGraphTraversalProcessor.html 07:46:55 (developers/Server/GraphsImpl: line 77) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/javadoc/omero/cmd/graphs/ChildOptionsPolicy.html 07:46:55 (developers/Server/GraphsImpl: line 100) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/javadoc/omero/cmd/graphs/GraphHelper.html 07:46:55 (developers/Server/GraphsImpl: line 100) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/javadoc/omero/cmd/graphs/GraphRequestFactory.html 07:46:55 (developers/Server/GraphsImpl: line 100) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/javadoc/omero/cmd/graphs/GraphUtil.html 07:46:55 (developers/Model/Containers: line 8) redirect https://docs.openmicroscopy.org/latest/ome-model/schemas/june-2016.html - with Found to https://ome-model.readthedocs.io/en/stable/schemas/june-2016.html 07:46:55 (developers/Server/GraphsImpl: line 48) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/javadoc/omero/cmd/graphs/NullGraphTraversalProcessor.html 07:46:55 (developers/Server/GraphsImpl: line 83) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/javadoc/omero/cmd/graphs/SkipHeadPolicy.html 07:46:55 ( sysadmins/index: line 15) redirect https://docs.openmicroscopy.org/latest/ome-model/specifications/ - with Found to https://ome-model.readthedocs.io/en/stable/specifications/ 07:46:55 (developers/Server/GraphsImpl: line 86) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/javadoc/omero/cmd/graphs/SkipTailPolicy.html 07:46:55 (developers/Model/Units: line 16) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/javadoc/omero/model/ElectricPotentialI.html 07:46:55 (developers/Model/Units: line 17) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/javadoc/omero/model/FrequencyI.html 07:46:55 (developers/Model/Units: line 19) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/javadoc/omero/model/PowerI.html 07:46:55 (developers/Model/Units: line 18) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/javadoc/omero/model/LengthI.html 07:46:55 (developers/Model/Units: line 20) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/javadoc/omero/model/PressureI.html 07:46:55 (sysadmins/config: line 1609) redirect https://docs.openmicroscopy.org/latest/omero/sysadmins/customization.html#download-restrictions - with Found to https://omero.readthedocs.io/en/stable/sysadmins/customization.html 07:46:55 (developers/Model/Units: line 21) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/javadoc/omero/model/TemperatureI.html 07:46:55 (developers/Model/Units: line 22) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/javadoc/omero/model/TimeI.html 07:46:55 ( index: line 35) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/ 07:46:55 (developers/Modules/Api: line 50) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/api/IConfig.html 07:46:55 (developers/Modules/Api: line 45) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/api/IAdmin.html 07:46:55 (developers/Modules/Api: line 126) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/api.html 07:46:55 (developers/Modules/Api: line 54) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/api/IContainer.html 07:46:55 (developers/Modules/Api: line 57) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/api/ILdap.html 07:46:55 (developers/Modules/Api: line 61) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/api/IMetadata.html 07:46:55 (developers/Modules/Api: line 67) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/api/IProjection.html 07:46:55 (developers/Modules/Api: line 64) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/api/IPixels.html 07:46:55 (developers/Modules/Api: line 70) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/api/IQuery.html 07:46:55 (developers/GettingStarted/AdvancedClientDevelopment: line 477) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/api/IQuery.html#projection 07:46:55 (developers/Modules/Api: line 74) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/api/IRenderingSettings.html 07:46:55 (developers/Modules/Api: line 80) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/api/IRoi.html 07:46:56 (developers/Modules/Api: line 77) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/api/IRepositoryInfo.html 07:46:56 (developers/Modules/Api: line 83) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/api/IScript.html 07:46:56 (developers/Modules/Api: line 86) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/api/ISession.html 07:46:56 (developers/Modules/Api: line 89) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/api/IShare.html 07:46:56 (developers/Modules/Api: line 91) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/api/ITimeline.html 07:46:56 (developers/Modules/Api: line 94) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/api/ITypes.html 07:46:56 (developers/Modules/Api: line 97) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/api/IUpdate.html 07:46:56 (developers/Modules/Api: line 111) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/api/RawFileStore.html 07:46:56 (developers/Modules/Api: line 114) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/api/RawPixelsStore.html 07:46:56 (developers/Modules/Api: line 117) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/api/RenderingEngine.html 07:46:56 (developers/Modules/Api: line 16) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/api/ServiceFactory.html 07:46:56 (developers/PythonBlitzGateway: line 111) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/api/ServiceFactory.html#createRenderingEngine 07:46:56 (developers/Modules/Api: line 121) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/api/ThumbnailStore.html 07:46:56 (developers/PythonBlitzGateway: line 111) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/api/ServiceFactory.html#getQueryService 07:46:56 (developers/Server/GraphRequests: line 75) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/cmd/Chgrp2.html 07:46:56 (developers/Server/GraphRequests: line 83) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/cmd/Chmod2.html 07:46:56 (developers/Server/GraphRequests: line 88) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/cmd/Delete2.html 07:46:56 (developers/Server/GraphRequests: line 79) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/cmd/Chown2.html 07:46:56 (developers/Server/GraphRequests: line 96) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/cmd/Duplicate.html 07:46:56 (developers/Server/GraphRequests: line 27) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/cmd/DiskUsage2.html 07:46:56 (developers/Server/GraphRequests: line 42) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/cmd/FindChildren.html 07:46:56 (developers/Server/GraphRequests: line 59) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/cmd/GraphModify2.html 07:46:56 (developers/Server/GraphRequests: line 34) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/cmd/FindParents.html 07:46:56 (developers/Server/GraphRequests: line 6) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/cmd/GraphQuery.html 07:46:56 (developers/Server/GraphRequests: line 18) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/cmd/LegalGraphTargets.html 07:46:56 (developers/Server/GraphRequests: line 104) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/cmd/SkipHead.html 07:46:57 (developers/GettingStarted: line 136) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/model.html 07:46:57 (developers/Server/GraphRequests: line 71) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/cmd/graphs/ChildOption.html 07:46:57 (developers/Tables: line 289) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/grid/Table.html 07:46:57 (developers/Server/LightAdmins: line 22) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/model/AdminPrivilege.html 07:46:57 (developers/GettingStarted: line 161) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/model/Annotation.html 07:46:57 (developers/GettingStarted: line 161) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/model/CommentAnnotation.html 07:46:57 (developers/GettingStarted: line 150) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/model/Dataset.html 07:46:57 (developers/GettingStarted: line 179) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/model/Channel.html 07:46:57 (developers/GettingStarted: line 161) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/model/DatasetAnnotationLink.html 07:46:57 (developers/GettingStarted: line 150) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/model/DatasetImageLink.html 07:46:57 (developers/GettingStarted: line 161) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/model/FileAnnotation.html 07:46:57 (developers/GettingStarted: line 150) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/model/Image.html 07:46:57 (developers/Server/Permissions: line 380) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/model/Permissions.html#canAnnotate 07:46:57 (developers/Server/Permissions: line 382) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/model/Permissions.html#canChown 07:46:57 (developers/Server/Permissions: line 381) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/model/Permissions.html#canChgrp 07:46:57 (developers/Server/Permissions: line 383) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/model/Permissions.html#canDelete 07:46:57 (developers/Server/Permissions: line 384) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/model/Permissions.html#canEdit 07:46:57 (developers/Server/Permissions: line 385) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/model/Permissions.html#canLink 07:46:57 (developers/GettingStarted: line 150) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/model/Project.html 07:46:57 (developers/GettingStarted: line 161) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/model/ProjectAnnotationLink.html 07:46:57 (developers/GettingStarted: line 179) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/model/Pixels.html 07:46:57 (developers/Server/LightAdmins: line 160) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/sys/EventContext.html 07:46:57 ( developers/Java: line 52) ok https://docs.openmicroscopy.org/omero-gateway/5.9.0/javadoc/omero/gateway/facility/BrowseFacility.html 07:46:57 (developers/GettingStarted: line 150) ok https://docs.openmicroscopy.org/omero-blitz/5.7.2/slice2html/omero/model/ProjectDatasetLink.html 07:46:57 ( developers/Java: line 52) ok https://docs.openmicroscopy.org/omero-gateway/5.9.0/javadoc//omero/gateway/facility/package-summary.html 07:46:57 ( developers/Java: line 44) ok https://docs.openmicroscopy.org/omero-gateway/5.9.0/javadoc/omero/gateway/Gateway.html 07:46:57 ( developers/Java: line 57) ok https://docs.openmicroscopy.org/omero-gateway/5.9.0/javadoc/omero/gateway/model/DataObject.html 07:46:57 (developers/Model/EveryObject: line 425) ok https://docs.openmicroscopy.org/omero-model/5.6.13/javadoc/ome/model/units/ElectricPotential.html 07:46:58 (developers/Model/EveryObject: line 24) ok https://docs.openmicroscopy.org/omero-model/5.6.13/javadoc/ome/model/IEnum.html 07:46:58 (developers/Model/EveryObject: line 92) ok https://docs.openmicroscopy.org/omero-model/5.6.13/javadoc/ome/model/ILink.html 07:46:58 (developers/Model/EveryObject: line 54) ok https://docs.openmicroscopy.org/omero-model/5.6.13/javadoc/ome/model/IMutable.html 07:46:58 (developers/Model/EveryObject: line 467) ok https://docs.openmicroscopy.org/omero-model/5.6.13/javadoc/ome/model/units/Frequency.html 07:46:58 (developers/Model/EveryObject: line 580) ok https://docs.openmicroscopy.org/omero-model/5.6.13/javadoc/ome/model/units/Length.html 07:46:58 (developers/Model/EveryObject: line 114) ok https://docs.openmicroscopy.org/omero-model/5.6.13/javadoc/ome/model/units/Power.html 07:46:58 (developers/Model/EveryObject: line 1190) ok https://docs.openmicroscopy.org/omero-model/5.6.13/javadoc/ome/model/units/Pressure.html 07:46:58 (developers/Model/EveryObject: line 1190) ok https://docs.openmicroscopy.org/omero-model/5.6.13/javadoc/ome/model/units/Temperature.html 07:46:58 (developers/Model/EveryObject: line 2238) ok https://docs.openmicroscopy.org/omero-model/5.6.13/javadoc/ome/model/units/Time.html 07:46:58 (developers/Server/LightAdmins: line 219) ok https://docs.openmicroscopy.org/omero-server/5.6.10/javadoc/ome/logic/AdminImpl.html 07:46:58 (developers/Server/LightAdmins: line 219) ok https://docs.openmicroscopy.org/omero-server/5.6.10/javadoc/ome/security/basic/BasicACLVoter.html 07:46:58 (developers/Server/LightAdmins: line 242) ok https://docs.openmicroscopy.org/omero-server/5.6.10/javadoc/ome/security/basic/LightAdminPrivilegesCleanup.html 07:46:58 (developers/Server/LightAdmins: line 219) ok https://docs.openmicroscopy.org/omero-server/5.6.10/javadoc/ome/security/basic/OmeroInterceptor.html 07:46:58 (developers/Server/LightAdmins: line 102) ok https://docs.openmicroscopy.org/omero-server/5.6.10/javadoc/ome/security/basic/LightAdminPrivilegesSecurityFilter.html 07:46:58 (developers/Server/GraphsImpl: line 11) ok https://docs.openmicroscopy.org/omero-server/5.6.10/javadoc/ome/services/graphs/GraphPathBean.html 07:46:58 (developers/Server/GraphsImpl: line 11) ok https://docs.openmicroscopy.org/omero-server/5.6.10/javadoc/ome/services/graphs/GraphPathReport.html 07:46:58 (developers/Server/GraphsImpl: line 60) ok https://docs.openmicroscopy.org/omero-server/5.6.10/javadoc/ome/services/graphs/GraphPolicy.html 07:46:58 (developers/Server/GraphsImpl: line 60) ok https://docs.openmicroscopy.org/omero-server/5.6.10/javadoc/ome/services/graphs/GraphPolicyRule.html 07:46:58 (developers/Server/GraphsImpl: line 88) ok https://docs.openmicroscopy.org/omero-server/5.6.10/javadoc/ome/services/graphs/GraphPolicyRulePredicate.html 07:46:58 (developers/Server/GraphsImpl: line 32) ok https://docs.openmicroscopy.org/omero-server/5.6.10/javadoc/ome/services/graphs/GraphTraversal.PlanExecutor.html 07:46:58 (developers/Server/GraphsImpl: line 88) ok https://docs.openmicroscopy.org/omero-server/5.6.10/javadoc/ome/services/graphs/PermissionsPredicate.html 07:46:58 (developers/Server/GraphsImpl: line 32) ok https://docs.openmicroscopy.org/omero-server/5.6.10/javadoc/ome/services/graphs/GraphTraversal.Processor.html 07:46:58 (developers/Server/GraphsImpl: line 22) ok https://docs.openmicroscopy.org/omero-server/5.6.10/javadoc/ome/services/graphs/GraphTraversal.html 07:46:58 (developers/Server/GraphsImpl: line 88) ok https://docs.openmicroscopy.org/omero-server/5.6.10/javadoc/ome/services/graphs/GroupPredicate.html 07:46:58 (developers/Server/GraphsImpl: line 42) ok https://docs.openmicroscopy.org/omero-server/5.6.10/javadoc/ome/services/graphs/ModelObjectSequencer.html 07:46:59 ( users/history: line 960) ok https://docs.openmicroscopy.org/omero/5.3.0/developers/whatsnew.html 07:46:59 (developers/Server/LightAdmins: line 236) ok https://docs.openmicroscopy.org/omero-server/5.6.10/javadoc/ome/services/util/DBUserCheck.html 07:46:59 (sysadmins/whatsnew: line 16) redirect https://docs.openmicroscopy.org/omero/5.5/sysadmins/whatsnew.html - permanently to https://docs.openmicroscopy.org/omero/5.5.1/sysadmins/whatsnew.html 07:46:59 (developers/Modules/Api: line 223) ok https://docs.oracle.com/javase/tutorial/java/annotations/basics.html 07:46:59 (sysadmins/config: line 924) ok https://docs.oracle.com/javase/tutorial/jndi/newstuff/readtimeout.html 07:46:59 (sysadmins/config: line 811) ok https://docs.oracle.com/javase/jndi/tutorial/ldap/connect/create.html 07:46:59 (sysadmins/server-ldap: line 318) ok https://docs.oracle.com/javase/jndi/tutorial/ldap/referral/jndi.html 07:46:59 (users/cli/import-target: line 157) ok https://docs.oracle.com/javase/7/docs/api/java/util/regex/Pattern.html 07:46:59 (sysadmins/config: line 2134) redirect https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples - with Found to https://omero.readthedocs.io/en/stable/sysadmins/grid.html 07:46:59 (sysadmins/dropbox: line 152) ok https://docs.python.org/2.7/library/site.html 07:47:00 (sysadmins/version-requirements: line 250) ok https://download.postgresql.org/pub/repos/yum/12/redhat/rhel-9-x86_64/ 07:47:00 (developers/Server/Aop: line 77) redirect https://docs.spring.io/spring/docs/2.0.x/reference/aop.html - permanently to https://docs.spring.io/spring-framework/docs/2.0.x/reference/aop.html 07:47:00 (developers/testing: line 45) ok https://docs.pytest.org/en/latest/ 07:47:00 (developers/Server/HowToCreateAService: line 101) redirect https://docs.spring.io/spring/docs/2.0.x/reference/beans.html#beans-factory-scopes-singleton - permanently to https://docs.spring.io/spring-framework/docs/2.0.x/reference/beans.html 07:47:00 (developers/testing: line 342) ok https://docs.pytest.org/en/latest/how-to/usage.html 07:47:00 (sysadmins/python3-migration: line 92) ok https://downloads.openmicroscopy.org 07:47:00 (sysadmins/version-requirements: line 197) ok https://download.rockylinux.org/pub/rocky/9/BaseOS/x86_64/os/Packages/ 07:47:00 (developers/GettingStarted: line 56) redirect https://downloads.openmicroscopy.org/latest/omero5.5/ - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/ 07:47:00 (sysadmins/unix/server-install-homebrew: line 204) redirect https://downloads.openmicroscopy.org/latest/omero/artifacts/ - permanently to https://downloads.openmicroscopy.org/omero/5.6.10/artifacts/ 07:47:00 (sysadmins/UpgradeCheck: line 29) redirect https://downloads.openmicroscopy.org/latest/omero - permanently to https://downloads.openmicroscopy.org/omero/5.6.10/ 07:47:00 (developers/analysis: line 12) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/ - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/api/ 07:47:01 ( index: line 35) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/ - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/ 07:47:01 (developers/PythonBlitzGateway: line 91) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/omero/omero.gateway.html - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/omero/omero.gateway.html 07:47:01 (developers/PythonBlitzGateway: line 171) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/omero/omero.gateway.html#omero.gateway.ImageWrapper - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/omero/omero.gateway.html 07:47:01 (developers/GettingStarted/AdvancedClientDevelopment: line 477) ok https://downloads.openmicroscopy.org/presentations/2017/Team-Training/Hibernate/ 07:47:01 (developers/PythonBlitzGateway: line 123) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/omero/omero.gateway.html#omero.gateway._BlitzGateway._createProxies - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/omero/omero.gateway.html 07:47:01 (developers/PythonBlitzGateway: line 19) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/omero/omero.gateway.html#omero.gateway._BlitzGateway - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/omero/omero.gateway.html 07:47:01 (sysadmins/ansible-docker: line 29) ok https://downloads.openmicroscopy.org/presentations/2020/Dundee/Workshops/OME2020-OMERO-Installation 07:47:01 (developers/Web/WebGateway: line 15) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/omeroweb/omeroweb.webgateway.html#module-omeroweb.webgateway.urls - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/omeroweb/omeroweb.webgateway.html 07:47:01 (developers/GettingStarted/AdvancedClientDevelopment: line 56) ok https://en.wikipedia.org/wiki/Fallacies_of_Distributed_Computing 07:47:01 (developers/Server/Aop: line 86) ok https://en.wikipedia.org/wiki/Aspect-oriented_programming 07:47:01 (sysadmins/server-ldap: line 322) ok https://en.wikipedia.org/wiki/Active_Directory 07:47:01 (sysadmins/in-place-import: line 288) ok https://en.wikipedia.org/wiki/Hard_link 07:47:01 (developers/GettingStarted/AdvancedClientDevelopment: line 78) ok https://en.wikipedia.org/wiki/Interface_description_language 07:47:01 (developers/Model/Units: line 185) ok https://en.wikipedia.org/wiki/International_System_of_Units 07:47:01 (sysadmins/server-ldap: line 4) ok 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users/history: line 807) ok https://www.openmicroscopy.org/2017/07/05/bio-formats-5-5-3.html 07:47:23 ( users/history: line 791) ok https://www.openmicroscopy.org/2017/09/20/bio-formats-5-7-1.html 07:47:23 (sysadmins/limitations: line 61) ok https://www.openmicroscopy.org/2018/11/29/ometiffpyramid.html 07:47:23 (developers/Model/StructuredAnnotations: line 62) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2013-06/SA_xsd.html#Annotation 07:47:23 ( index: line 39) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome.html 07:47:23 (users/community-resources: line 14) ok https://www.openmicroscopy.org/bio-formats 07:47:23 (users/community-resources: line 23) redirect https://www.openmicroscopy.org/community/ - permanently to https://www.openmicroscopy.org/community/index.php 07:47:23 (sysadmins/server-performance: line 149) ok https://www.openmicroscopy.org/community/viewtopic.php?f=4&t=7400 07:47:23 (sysadmins/dropbox: line 152) ok https://www.openmicroscopy.org/community/viewtopic.php?f=4&t=7810#p15910 07:47:23 (developers/Server/ExtendingOmero: line 329) ok https://www.nginx.com/resources/wiki/ 07:47:23 (sysadmins/server-ldap: line 315) ok https://www.openmicroscopy.org/community/viewtopic.php?f=5&t=14 07:47:23 (sysadmins/troubleshooting: line 282) ok https://www.openmicroscopy.org/community/viewtopic.php?f=5&t=7537 07:47:23 (sysadmins/server-upgrade: line 255) ok https://www.openmicroscopy.org/community/viewtopic.php?f=5&t=7778 07:47:23 (sysadmins/troubleshooting: line 284) ok https://www.openmicroscopy.org/community/viewtopic.php?f=6&t=7722&p=15264&hilit=CheckedPath#p15264 07:47:23 (sysadmins/unix/server-installation: line 458) ok https://www.openmicroscopy.org/community/viewtopic.php?f=5&t=360#p922 07:47:23 ( users/index: line 59) ok https://www.openmicroscopy.org/explore/ 07:47:23 (users/clients-overview: line 28) ok https://www.openmicroscopy.org/omero/analyze 07:47:23 (sysadmins/ansible-docker: line 32) ok https://www.openmicroscopy.org/omero/apps/ 07:47:23 (developers/Matlab: line 12) ok https://www.openmicroscopy.org/omero/downloads/ 07:47:23 (sysadmins/unix/install-web/walkthrough/omeroweb-install-centos7-ice3.6: line 77) ok https://www.openmicroscopy.org/omero/figure/ 07:47:23 (sysadmins/ansible-docker: line 25) ok https://www.openmicroscopy.org/omero/institution/getting-started.html 07:47:23 (sysadmins/public: line 97) ok https://www.openmicroscopy.org/omero/iviewer/ 07:47:23 ( users/index: line 54) ok https://www.openmicroscopy.org/omero/new 07:47:23 ( users/index: line 54) ok https://www.openmicroscopy.org/omero/scientists 07:47:23 (sysadmins/server-security: line 21) ok https://www.openmicroscopy.org/security/ 07:47:23 ( index: line 28) ok https://www.openmicroscopy.org/security/advisories/ 07:47:23 ( users/history: line 1694) ok https://www.openmicroscopy.org/security/advisories/2012-SV1-ldap-authentication 07:47:23 ( users/history: line 1526) ok https://www.openmicroscopy.org/security/advisories/2014-SV1-unicode-passwords 07:47:23 ( users/history: line 1527) ok https://www.openmicroscopy.org/security/advisories/2014-SV2-empty-passwords 07:47:23 ( users/history: line 1487) ok https://www.openmicroscopy.org/security/advisories/2014-SV3-csrf 07:47:23 ( users/history: line 1488) ok https://www.openmicroscopy.org/security/advisories/2014-SV4-poodle 07:47:23 ( users/history: line 1032) ok https://www.openmicroscopy.org/security/advisories/2016-SV1-cleanse 07:47:23 ( users/history: line 1017) ok https://www.openmicroscopy.org/security/advisories/2016-SV2-share 07:47:23 ( users/history: line 970) ok https://www.openmicroscopy.org/security/advisories/2017-SV1-filename 07:47:23 ( users/history: line 974) ok https://www.openmicroscopy.org/security/advisories/2017-SV2-edit-rw 07:47:23 ( users/history: line 977) ok https://www.openmicroscopy.org/security/advisories/2017-SV3-delete-script 07:47:24 ( users/history: line 796) ok https://www.openmicroscopy.org/security/advisories/2017-SV4-guest-user 07:47:24 (sysadmins/server-upgrade: line 134) ok https://www.openmicroscopy.org/security/advisories/2017-SV5-filename-2 07:47:24 ( users/history: line 581) ok https://www.openmicroscopy.org/security/advisories/2017-SV6-job-file-link 07:47:24 (developers/Modules/Api: line 28) ok https://www.openmicroscopy.org/support/ 07:47:24 (sysadmins/in-place-import: line 292) ok https://www.openwall.com/lists/kernel-hardening/2012/02/21/20 07:47:24 (sysadmins/server-backup-and-restore: line 162) redirect https://www.nongnu.org/rdiff-backup/docs.html - with Found to https://rdiff-backup.net/ 07:47:24 (developers/Server/ExtendingOmero: line 6) redirect https://www.openmicroscopy.org/forums - permanently to https://forum.image.sc/c/data-management/29 07:47:25 (sysadmins/version-requirements: line 448) redirect https://www.oracle.com/technetwork/java/javase/downloads/index-jsp-138363.html - permanently to https://www.oracle.com/java/technologies/downloads/ 07:47:25 (sysadmins/unix/server-installation: line 130) redirect https://www.oracle.com/technetwork/java/javase/downloads/index.html - permanently to https://www.oracle.com/java/technologies/downloads/ 07:47:25 (developers/Server: line 32) redirect https://www.oracle.com/technetwork/java/javaee/ejb/index.html - permanently to https://www.oracle.com/java/technologies/enterprise-javabeans-technology.html 07:47:25 (sysadmins/version-requirements: line 397) ok https://www.oracle.com/technetwork/java/eol-135779.html 07:47:26 (sysadmins/unix/server-postgresql: line 145) redirect https://www.postgresql.org/docs/current/interactive/client-authentication.html - permanently to https://www.postgresql.org/docs/current/client-authentication.html 07:47:26 (sysadmins/unix/server-postgresql: line 140) redirect https://www.postgresql.org/docs/current/interactive/index.html - permanently to https://www.postgresql.org/docs/current/index.html 07:47:26 (sysadmins/unix/server-postgresql: line 143) redirect https://www.postgresql.org/docs/current/interactive/runtime-config-connection.html - permanently to https://www.postgresql.org/docs/current/runtime-config-connection.html 07:47:26 (sysadmins/version-requirements: line 266) ok https://www.postgresql.org/download/ 07:47:26 (sysadmins/unix/server-postgresql: line 12) ok https://www.postgresql.org/support/versioning/ 07:47:26 ( users/cli/index: line 4) ok https://www.python.org 07:47:26 (developers/GettingStarted: line 126) ok https://www.pgadmin.org/ 07:47:26 (sysadmins/server-backup-and-restore: line 112) ok https://www.postgresql.org/docs/10/backup.html 07:47:26 (sysadmins/version-requirements: line 290) redirect https://www.python.org/dev/peps/pep-0494/ - with Found to https://peps.python.org/pep-0494/ 07:47:26 (sysadmins/version-requirements: line 295) redirect https://www.python.org/dev/peps/pep-0537/ - with Found to https://peps.python.org/pep-0537/ 07:47:27 (sysadmins/config: line 1391) ok https://www.quartz-scheduler.org/api/1.8.6/org/quartz/CronExpression.html 07:47:27 (developers/Web/CSRF: line 14) ok https://www.rfc-editor.org/rfc/rfc2616.html#section-9.1.1 07:47:27 (developers/logging: line 4) ok https://www.slf4j.org 07:47:27 (sysadmins/server-syslog: line 52) ok https://www.splunk.com/ 07:47:27 (developers/GettingStarted/AdvancedClientDevelopment: line 19) ok https://www.scons.org 07:47:27 (sysadmins/config: line 2324) ok https://www.w3.org/TR/referrer-policy/#referrer-policies 07:47:28 (sysadmins/version-requirements: line 262) redirect https://yum.postgresql.org/16/redhat/rhel-9-x86_64/ - permanently to https://download.postgresql.org/pub/repos/yum/16/redhat/rhel-9-x86_64/ 07:47:28 (sysadmins/version-requirements: line 259) redirect https://yum.postgresql.org/15/redhat/rhel-9-x86_64/ - permanently to https://download.postgresql.org/pub/repos/yum/15/redhat/rhel-9-x86_64/ 07:47:29 (sysadmins/version-requirements: line 256) redirect https://yum.postgresql.org/14/redhat/rhel-9-x86_64/ - permanently to https://download.postgresql.org/pub/repos/yum/14/redhat/rhel-9-x86_64/ 07:47:29 ( developers/Cpp: line 4) ok https://zeroc.com 07:47:29 (developers/Web/LinkingFromWebclient: line 86) ok https://www.ncbi.nlm.nih.gov/protein/000397 07:47:30 (sysadmins/unix/server-installation: line 196) redirect https://zeroc.com/downloads/ice - temporarily to https://zeroc.com/ice/downloads/3.7 07:47:30 ( developers/Web: line 29) redirect https://zeroc.com/products/ice - permanently to https://zeroc.com/ice 07:58:59 (users/clients-overview: line 18) redirect https://java.com/ - with Found to https://www.java.com/en/ 07:58:59 Adding redirects: 07:58:59 build succeeded. 07:58:59 07:58:59 Look for any errors in the above output or in _build/linkcheck/output.txt 07:59:00 07:59:00 Link check complete; look for any errors in the above output or in _build/linkcheck/output.txt. 07:59:00 Archiving artifacts 07:59:02 Finished: SUCCESS