Console Output
+ export BASE_REPO=omero-guides.git
+ BASE_REPO=omero-guides.git
+ export BASE_BRANCH=master
+ BASE_BRANCH=master
+ export VERSION_LOG=/home/omero/workspace/OMERO-guides-push/build/version.tsv
+ VERSION_LOG=/home/omero/workspace/OMERO-guides-push/build/version.tsv
+ . build/venv/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ unset VIRTUAL_ENV_PROMPT
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/omero/workspace/OMERO-guides-push/build/venv
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/home/omero/workspace/OMERO-guides-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ PS1='(venv) '
++ export PS1
++ VIRTUAL_ENV_PROMPT='(venv) '
++ export VIRTUAL_ENV_PROMPT
++ hash -r
+ '[' merge_ci '!=' null ']'
+ export PUSH_BRANCH=merge_ci
+ PUSH_BRANCH=merge_ci
+ '[' null '!=' null ']'
+ export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment'
+ STATUS=success-only
+ MERGE_OPTIONS='-vvv --no-ask --reset --comment'
+ bash build/build-infra-master/recursive-merge
Merge base repository (no submodule updates)
2026-07-07 16:19:12,980 [ scc.config] DEBUG Found github.token
2026-07-07 16:19:12,982 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2026-07-07 16:19:13,225 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-07-07 16:19:13,689 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-07-07 16:19:14,084 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2026-07-07 16:19:14,084 [ scc.gh] DEBUG 4991 remaining from 5000 (Reset at 17:07
2026-07-07 16:19:14,085 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-07-07 16:19:14,094 [ scc.git] DEBUG Check current status
2026-07-07 16:19:14,094 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-07-07 16:19:14,113 [ scc.git] DEBUG 6be1bbd Merge pull request #301 from pwalczysko/external-guides
2026-07-07 16:19:14,114 [ scc.git] DEBUG Calling 'git submodule status'
2026-07-07 16:19:14,259 [ scc.git] DEBUG 248e8cbfb0372b3d3be2d82cfe9234dd2e25c140 cellprofiler (v0.4.0-32-g248e8cb)
2026-07-07 16:19:14,338 [ scc.git] DEBUG 4b1b912438f7415faf2d1f618d596968121bcfe8 download (4b1b912)
2026-07-07 16:19:14,369 [ scc.git] DEBUG 654d43b5ef64f56bd6a99c69a9c98cbb5c8f76a7 figure (v0.1.0-55-g654d43b)
2026-07-07 16:19:14,402 [ scc.git] DEBUG 218b05a197695f01d8fc3d2cc6d197981df701c9 fiji (v0.2.1-86-g218b05a)
2026-07-07 16:19:14,474 [ scc.git] DEBUG 8f4b1035592a83dacf55e5cb585fd6ebe775f7f4 fpbioimage (heads/master)
2026-07-07 16:19:14,506 [ scc.git] DEBUG f7b4afbe7c171a2063a46916851a26a84b83c4e6 ilastik (v0.3.4-2-gf7b4afb)
2026-07-07 16:19:14,588 [ scc.git] DEBUG d9033638b26778db35de1c77428190ac4cad1936 introduction (heads/master)
2026-07-07 16:19:14,675 [ scc.git] DEBUG 6ed80b33e8ddc97c930e3ea8ba00702f34e0a8ed iviewer (heads/master)
2026-07-07 16:19:14,714 [ scc.git] DEBUG a4b6b55205d0588c48baa8177aa7608fd40b3f85 java (v0.1.1-17-ga4b6b55)
2026-07-07 16:19:14,748 [ scc.git] DEBUG ecbd07c31df9b103937f4803aa35f104480365f2 matlab (v0.1.0-26-gecbd07c)
2026-07-07 16:19:14,825 [ scc.git] DEBUG d43e17feb8400f35a51d20e050b8a87bcdbcd1eb mde (heads/master)
2026-07-07 16:19:14,912 [ scc.git] DEBUG 4ef1eaaf315bbb8ae56e9ea780971735dc406f46 orbit (heads/master)
2026-07-07 16:19:14,996 [ scc.git] DEBUG 0875cf1cbb43411bfd5849763da8fe7d2bdafdc0 parade (0875cf1)
2026-07-07 16:19:15,029 [ scc.git] DEBUG 5ba303a4f2ace9cd09645ad1915368f1ea2b283f python (v0.3.0-96-g5ba303a)
2026-07-07 16:19:15,111 [ scc.git] DEBUG 6db8b1ceb6e7a44eb6145b4976fb3e048b04ee4f qupath (heads/master)
2026-07-07 16:19:15,152 [ scc.git] DEBUG a770a1048469668b66f5bde686d5b6d84d021e6d r (v0.1.0-24-ga770a10)
2026-07-07 16:19:15,240 [ scc.git] DEBUG 6133d50509750bccdb809e0089bd5c717357d379 scripts (heads/master)
2026-07-07 16:19:15,326 [ scc.git] DEBUG ffe98a8835c0f1bf345cb9ec0cfd2ba4aa304bd1 trackmate (heads/master)
2026-07-07 16:19:15,350 [ scc.git] DEBUG 6a5e0152c1b372ebb146803c7421c95b42474200 upload (v0.1.0-98-g6a5e015)
2026-07-07 16:19:15,361 [ scc.config] DEBUG Found remote.origin.url
2026-07-07 16:19:15,681 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides HTTP/1.1" 200 None
2026-07-07 16:19:16,385 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-07-07 16:19:16,891 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-07-07 16:19:17,352 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-07-07 16:19:17,828 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-07-07 16:19:17,829 [ scc.git] DEBUG Resetting...
2026-07-07 16:19:17,831 [ scc.git] DEBUG Calling 'git reset --hard HEAD'
2026-07-07 16:19:18,112 [ scc.git] DEBUG HEAD is now at 6be1bbd Merge pull request #301 from pwalczysko/external-guides
2026-07-07 16:19:18,113 [ scc.git] DEBUG Calling 'git submodule update --recursive'
2026-07-07 16:19:19,201 [ scc.git] DEBUG Check current status
2026-07-07 16:19:19,201 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-07-07 16:19:19,215 [ scc.git] DEBUG 6be1bbd Merge pull request #301 from pwalczysko/external-guides
2026-07-07 16:19:19,216 [ scc.git] DEBUG Calling 'git submodule status'
2026-07-07 16:19:19,353 [ scc.git] DEBUG 248e8cbfb0372b3d3be2d82cfe9234dd2e25c140 cellprofiler (v0.4.0-32-g248e8cb)
2026-07-07 16:19:19,428 [ scc.git] DEBUG 4b1b912438f7415faf2d1f618d596968121bcfe8 download (4b1b912)
2026-07-07 16:19:19,460 [ scc.git] DEBUG 654d43b5ef64f56bd6a99c69a9c98cbb5c8f76a7 figure (v0.1.0-55-g654d43b)
2026-07-07 16:19:19,491 [ scc.git] DEBUG 218b05a197695f01d8fc3d2cc6d197981df701c9 fiji (v0.2.1-86-g218b05a)
2026-07-07 16:19:19,553 [ scc.git] DEBUG 8f4b1035592a83dacf55e5cb585fd6ebe775f7f4 fpbioimage (heads/master)
2026-07-07 16:19:19,578 [ scc.git] DEBUG f7b4afbe7c171a2063a46916851a26a84b83c4e6 ilastik (v0.3.4-2-gf7b4afb)
2026-07-07 16:19:19,638 [ scc.git] DEBUG d9033638b26778db35de1c77428190ac4cad1936 introduction (heads/master)
2026-07-07 16:19:19,710 [ scc.git] DEBUG 6ed80b33e8ddc97c930e3ea8ba00702f34e0a8ed iviewer (heads/master)
2026-07-07 16:19:19,741 [ scc.git] DEBUG a4b6b55205d0588c48baa8177aa7608fd40b3f85 java (v0.1.1-17-ga4b6b55)
2026-07-07 16:19:19,773 [ scc.git] DEBUG ecbd07c31df9b103937f4803aa35f104480365f2 matlab (v0.1.0-26-gecbd07c)
2026-07-07 16:19:19,848 [ scc.git] DEBUG d43e17feb8400f35a51d20e050b8a87bcdbcd1eb mde (heads/master)
2026-07-07 16:19:19,910 [ scc.git] DEBUG 4ef1eaaf315bbb8ae56e9ea780971735dc406f46 orbit (heads/master)
2026-07-07 16:19:19,975 [ scc.git] DEBUG 0875cf1cbb43411bfd5849763da8fe7d2bdafdc0 parade (0875cf1)
2026-07-07 16:19:20,007 [ scc.git] DEBUG 5ba303a4f2ace9cd09645ad1915368f1ea2b283f python (v0.3.0-96-g5ba303a)
2026-07-07 16:19:20,071 [ scc.git] DEBUG 6db8b1ceb6e7a44eb6145b4976fb3e048b04ee4f qupath (heads/master)
2026-07-07 16:19:20,097 [ scc.git] DEBUG a770a1048469668b66f5bde686d5b6d84d021e6d r (v0.1.0-24-ga770a10)
2026-07-07 16:19:20,173 [ scc.git] DEBUG 6133d50509750bccdb809e0089bd5c717357d379 scripts (heads/master)
2026-07-07 16:19:20,250 [ scc.git] DEBUG ffe98a8835c0f1bf345cb9ec0cfd2ba4aa304bd1 trackmate (heads/master)
2026-07-07 16:19:20,270 [ scc.git] DEBUG 6a5e0152c1b372ebb146803c7421c95b42474200 upload (v0.1.0-98-g6a5e015)
2026-07-07 16:19:20,271 [ scc.merge] INFO Merging Pull Request(s) based on master
2026-07-07 16:19:20,271 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
2026-07-07 16:19:20,271 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
2026-07-07 16:19:20,271 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
2026-07-07 16:19:20,271 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
2026-07-07 16:19:20,271 [ scc.repo] DEBUG ## PRs found:
2026-07-07 16:19:20,613 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides/pulls HTTP/1.1" 200 None
2026-07-07 16:19:21,195 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides/issues/305 HTTP/1.1" 200 None
2026-07-07 16:19:21,195 [ scc.repo] DEBUG # ... Include label: dependencies
2026-07-07 16:19:21,195 [ scc.repo] DEBUG - PR 305 dependabot[bot] 'Bump parade from `0875cf1` to `908b335`'
2026-07-07 16:19:21,691 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides/issues/304 HTTP/1.1" 200 None
2026-07-07 16:19:21,691 [ scc.repo] DEBUG # ... Include label: dependencies
2026-07-07 16:19:21,691 [ scc.repo] DEBUG - PR 304 dependabot[bot] 'Bump python from `5ba303a` to `17536a9`'
2026-07-07 16:19:22,224 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides/issues/303 HTTP/1.1" 200 None
2026-07-07 16:19:22,225 [ scc.repo] DEBUG # ... Include label: dependencies
2026-07-07 16:19:22,225 [ scc.repo] DEBUG - PR 303 dependabot[bot] 'Bump fiji from `218b05a` to `86f00e3`'
2026-07-07 16:19:22,225 [ scc.repo] DEBUG ## Branches found:
2026-07-07 16:19:22,225 [ scc.git] DEBUG Get sha1 of %s
2026-07-07 16:19:22,225 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-07 16:19:22,237 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-07-07 16:19:22,253 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-07-07 16:19:22,253 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-07-07 16:19:22,268 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-07-07 16:19:22,315 [ scc.git] DEBUG Already up to date.
2026-07-07 16:19:22,315 [ scc.git] DEBUG Calling 'git fetch origin pull/303/head'
2026-07-07 16:19:22,749 [ scc.git] DEBUG From https://github.com/ome/omero-guides
2026-07-07 16:19:22,749 [ scc.git] DEBUG * branch refs/pull/303/head -> FETCH_HEAD
2026-07-07 16:19:22,779 [ scc.git] DEBUG Calling 'git fetch origin pull/304/head'
2026-07-07 16:19:23,168 [ scc.git] DEBUG From https://github.com/ome/omero-guides
2026-07-07 16:19:23,168 [ scc.git] DEBUG * branch refs/pull/304/head -> FETCH_HEAD
2026-07-07 16:19:23,189 [ scc.git] DEBUG Calling 'git fetch origin pull/305/head'
2026-07-07 16:19:23,567 [ scc.git] DEBUG From https://github.com/ome/omero-guides
2026-07-07 16:19:23,567 [ scc.git] DEBUG * branch refs/pull/305/head -> FETCH_HEAD
2026-07-07 16:19:23,592 [ scc.git] DEBUG ## Unique users: []
2026-07-07 16:19:23,592 [ scc.git] DEBUG Get sha1 of %s
2026-07-07 16:19:23,592 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-07 16:19:23,601 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...231cbb7ea1113bb4fde03b88d93ae9426f976e6d'
2026-07-07 16:19:23,616 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-07 16:19:23,624 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 303 (Bump fiji from `218b05a` to `86f00e3`) 231cbb7ea1113bb4fde03b88d93ae9426f976e6d'
2026-07-07 16:19:24,089 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-07-07 16:19:24,170 [ scc.git] DEBUG fiji | 2 +-
2026-07-07 16:19:24,170 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-07-07 16:19:24,390 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-07-07 16:19:24,391 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...a94bb77eca798ac020dc0738856bd211a17b958a'
2026-07-07 16:19:24,411 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-07 16:19:24,420 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 304 (Bump python from `5ba303a` to `17536a9`) a94bb77eca798ac020dc0738856bd211a17b958a'
2026-07-07 16:19:25,011 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-07-07 16:19:25,079 [ scc.git] DEBUG python | 2 +-
2026-07-07 16:19:25,079 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-07-07 16:19:25,307 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-07-07 16:19:25,308 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...150c7210dc5f13e4b062846f400ebc253a2d6f9c'
2026-07-07 16:19:25,329 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-07 16:19:25,339 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 305 (Bump parade from `0875cf1` to `908b335`) 150c7210dc5f13e4b062846f400ebc253a2d6f9c'
2026-07-07 16:19:25,873 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-07-07 16:19:25,933 [ scc.git] DEBUG parade | 2 +-
2026-07-07 16:19:25,933 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-07-07 16:19:26,128 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-07-07 16:19:26,128 [ scc.git] DEBUG Calling 'git submodule update'
2026-07-07 16:19:26,730 [ scc.git] DEBUG Submodule path 'fiji': checked out '86f00e3e570d62226b02da1dc0cc639c389c7104'
2026-07-07 16:19:26,906 [ scc.git] DEBUG Submodule path 'parade': checked out '908b3356722bb23aafe103d87f8675f80fbaa5ed'
2026-07-07 16:19:27,356 [ scc.git] DEBUG Submodule path 'python': checked out '17536a9e5f83241b2ca7eff9f26ce28b77958cf5'
2026-07-07 16:19:27,357 [ scc.git] DEBUG Get sha1 of %s
2026-07-07 16:19:27,357 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-07 16:19:27,366 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-07-07 16:19:28,634 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f69b0605690> has no local changes
2026-07-07 16:19:28,635 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone
Repository: ome/omero-guides
Excluded PRs:
- PR 23 jburel 'Remove submodules' (exclude comment)
Already up to date.
Merged PRs:
- PR 303 dependabot[bot] 'Bump fiji from `218b05a` to `86f00e3`'
- PR 304 dependabot[bot] 'Bump python from `5ba303a` to `17536a9`'
- PR 305 dependabot[bot] 'Bump parade from `0875cf1` to `908b335`'
Generated by OMERO-guides-push#2 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-guides-push/2/)'
2026-07-07 16:19:29,550 [ scc.git] DEBUG [detached HEAD a902a07] merge master -Dorg -Snone
2026-07-07 16:19:29,551 [ scc.merge] INFO Repository: ome/omero-guides
2026-07-07 16:19:29,551 [ scc.merge] INFO Excluded PRs:
2026-07-07 16:19:29,551 [ scc.merge] INFO - PR 23 jburel 'Remove submodules' (exclude comment)
2026-07-07 16:19:29,551 [ scc.merge] INFO Already up to date.
2026-07-07 16:19:29,551 [ scc.merge] INFO
2026-07-07 16:19:29,551 [ scc.merge] INFO Merged PRs:
2026-07-07 16:19:29,551 [ scc.merge] INFO - PR 303 dependabot[bot] 'Bump fiji from `218b05a` to `86f00e3`'
2026-07-07 16:19:29,551 [ scc.merge] INFO - PR 304 dependabot[bot] 'Bump python from `5ba303a` to `17536a9`'
2026-07-07 16:19:29,551 [ scc.merge] INFO - PR 305 dependabot[bot] 'Bump parade from `0875cf1` to `908b335`'
2026-07-07 16:19:29,551 [ scc.merge] INFO
2026-07-07 16:19:29,551 [ scc.merge] DEBUG Cleaning remote branches created for merging
2026-07-07 16:19:29,551 [ scc.git] DEBUG Calling 'git remote'
Synchronizing submodule url for 'cellprofiler'
Synchronizing submodule url for 'download'
Synchronizing submodule url for 'figure'
Synchronizing submodule url for 'fiji'
Synchronizing submodule url for 'fpbioimage'
Synchronizing submodule url for 'ilastik'
Synchronizing submodule url for 'introduction'
Synchronizing submodule url for 'iviewer'
Synchronizing submodule url for 'java'
Synchronizing submodule url for 'matlab'
Synchronizing submodule url for 'mde'
Synchronizing submodule url for 'orbit'
Synchronizing submodule url for 'parade'
Synchronizing submodule url for 'python'
Synchronizing submodule url for 'qupath'
Synchronizing submodule url for 'r'
Synchronizing submodule url for 'scripts'
Synchronizing submodule url for 'trackmate'
Synchronizing submodule url for 'upload'
Submodule path 'download': checked out 'a27d196bee4a96b586246dc5d94ef07db7c5c0f8'
Submodule path 'ilastik': checked out 'c0bbd4292f8e5141db088fe9a5a5eef41a61e602'
Submodule path 'python': checked out '41e4ded95c4caa46ecaa8caea4a1c488587e5c31'
Merge all submodules2026-07-07 16:19:41,854 [ scc.config] DEBUG Found github.token
2026-07-07 16:19:41,856 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2026-07-07 16:19:42,140 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-07-07 16:19:42,597 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-07-07 16:19:43,000 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2026-07-07 16:19:43,001 [ scc.gh] DEBUG 4988 remaining from 5000 (Reset at 17:07
2026-07-07 16:19:43,002 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-07-07 16:19:43,011 [ scc.git] DEBUG Check current status
2026-07-07 16:19:43,011 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-07-07 16:19:43,029 [ scc.git] DEBUG a902a07 merge master -Dorg -Snone
2026-07-07 16:19:43,030 [ scc.git] DEBUG Calling 'git submodule status'
2026-07-07 16:19:43,170 [ scc.git] DEBUG 248e8cbfb0372b3d3be2d82cfe9234dd2e25c140 cellprofiler (v0.4.0-32-g248e8cb)
2026-07-07 16:19:43,260 [ scc.git] DEBUG +a27d196bee4a96b586246dc5d94ef07db7c5c0f8 download (heads/master)
2026-07-07 16:19:43,296 [ scc.git] DEBUG 654d43b5ef64f56bd6a99c69a9c98cbb5c8f76a7 figure (v0.1.0-55-g654d43b)
2026-07-07 16:19:43,328 [ scc.git] DEBUG 86f00e3e570d62226b02da1dc0cc639c389c7104 fiji (v0.2.1-89-g86f00e3)
2026-07-07 16:19:43,417 [ scc.git] DEBUG 8f4b1035592a83dacf55e5cb585fd6ebe775f7f4 fpbioimage (heads/master)
2026-07-07 16:19:43,458 [ scc.git] DEBUG +c0bbd4292f8e5141db088fe9a5a5eef41a61e602 ilastik (v0.3.4-14-gc0bbd42)
2026-07-07 16:19:43,557 [ scc.git] DEBUG d9033638b26778db35de1c77428190ac4cad1936 introduction (heads/master)
2026-07-07 16:19:43,648 [ scc.git] DEBUG 6ed80b33e8ddc97c930e3ea8ba00702f34e0a8ed iviewer (heads/master)
2026-07-07 16:19:43,682 [ scc.git] DEBUG a4b6b55205d0588c48baa8177aa7608fd40b3f85 java (v0.1.1-17-ga4b6b55)
2026-07-07 16:19:43,718 [ scc.git] DEBUG ecbd07c31df9b103937f4803aa35f104480365f2 matlab (v0.1.0-26-gecbd07c)
2026-07-07 16:19:43,812 [ scc.git] DEBUG d43e17feb8400f35a51d20e050b8a87bcdbcd1eb mde (heads/master)
2026-07-07 16:19:43,903 [ scc.git] DEBUG 4ef1eaaf315bbb8ae56e9ea780971735dc406f46 orbit (heads/master)
2026-07-07 16:19:43,991 [ scc.git] DEBUG 908b3356722bb23aafe103d87f8675f80fbaa5ed parade (heads/master)
2026-07-07 16:19:44,024 [ scc.git] DEBUG +41e4ded95c4caa46ecaa8caea4a1c488587e5c31 python (v0.3.0-118-g41e4ded)
2026-07-07 16:19:44,106 [ scc.git] DEBUG 6db8b1ceb6e7a44eb6145b4976fb3e048b04ee4f qupath (heads/master)
2026-07-07 16:19:44,143 [ scc.git] DEBUG a770a1048469668b66f5bde686d5b6d84d021e6d r (v0.1.0-24-ga770a10)
2026-07-07 16:19:44,238 [ scc.git] DEBUG 6133d50509750bccdb809e0089bd5c717357d379 scripts (heads/master)
2026-07-07 16:19:44,332 [ scc.git] DEBUG ffe98a8835c0f1bf345cb9ec0cfd2ba4aa304bd1 trackmate (heads/master)
2026-07-07 16:19:44,355 [ scc.git] DEBUG 6a5e0152c1b372ebb146803c7421c95b42474200 upload (v0.1.0-98-g6a5e015)
2026-07-07 16:19:44,367 [ scc.config] DEBUG Found remote.origin.url
2026-07-07 16:19:44,708 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides HTTP/1.1" 200 None
2026-07-07 16:19:45,218 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-07-07 16:19:45,697 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-07-07 16:19:46,147 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-07-07 16:19:46,615 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-07-07 16:19:46,616 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-07-07 16:19:46,790 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/cellprofiler
2026-07-07 16:19:46,790 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-07-07 16:19:46,801 [ scc.git] DEBUG Check current status
2026-07-07 16:19:46,801 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-07-07 16:19:46,819 [ scc.git] DEBUG 248e8cb Merge pull request #23 from jburel/rtd_build
2026-07-07 16:19:46,820 [ scc.git] DEBUG Calling 'git submodule status'
2026-07-07 16:19:46,953 [ scc.config] DEBUG Found remote.origin.url
2026-07-07 16:19:47,269 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-cellprofiler HTTP/1.1" 200 None
2026-07-07 16:19:47,850 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-07-07 16:19:48,327 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-07-07 16:19:48,867 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-07-07 16:19:49,324 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-07-07 16:19:49,325 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-07-07 16:19:49,427 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2026-07-07 16:19:49,427 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/download
2026-07-07 16:19:49,427 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-07-07 16:19:49,442 [ scc.git] DEBUG Check current status
2026-07-07 16:19:49,443 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-07-07 16:19:49,464 [ scc.git] DEBUG a27d196 Fix build failure on rtd
2026-07-07 16:19:49,466 [ scc.git] DEBUG Calling 'git submodule status'
2026-07-07 16:19:49,573 [ scc.config] DEBUG Found remote.origin.url
2026-07-07 16:19:49,976 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-download HTTP/1.1" 200 None
2026-07-07 16:19:50,688 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-07-07 16:19:51,144 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-07-07 16:19:51,602 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-07-07 16:19:52,091 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-07-07 16:19:52,092 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-07-07 16:19:52,186 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2026-07-07 16:19:52,186 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/figure
2026-07-07 16:19:52,186 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-07-07 16:19:52,199 [ scc.git] DEBUG Check current status
2026-07-07 16:19:52,199 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-07-07 16:19:52,216 [ scc.git] DEBUG 654d43b Merge pull request #16 from jburel/rtd_build
2026-07-07 16:19:52,216 [ scc.git] DEBUG Calling 'git submodule status'
2026-07-07 16:19:52,345 [ scc.config] DEBUG Found remote.origin.url
2026-07-07 16:19:52,744 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-figure HTTP/1.1" 200 None
2026-07-07 16:19:53,368 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-07-07 16:19:53,831 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-07-07 16:19:54,356 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-07-07 16:19:54,811 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-07-07 16:19:54,812 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-07-07 16:19:54,922 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2026-07-07 16:19:54,923 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/fiji
2026-07-07 16:19:54,923 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-07-07 16:19:54,936 [ scc.git] DEBUG Check current status
2026-07-07 16:19:54,936 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-07-07 16:19:54,957 [ scc.git] DEBUG 86f00e3 Merge pull request #33 from will-moore/bdv_mobie_update
2026-07-07 16:19:54,958 [ scc.git] DEBUG Calling 'git submodule status'
2026-07-07 16:19:55,077 [ scc.config] DEBUG Found remote.origin.url
2026-07-07 16:19:55,435 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-fiji HTTP/1.1" 200 None
2026-07-07 16:19:55,945 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-07-07 16:19:56,443 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-07-07 16:19:57,070 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-07-07 16:19:57,532 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-07-07 16:19:57,533 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-07-07 16:19:57,633 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2026-07-07 16:19:57,633 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/fpbioimage
2026-07-07 16:19:57,633 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-07-07 16:19:57,648 [ scc.git] DEBUG Check current status
2026-07-07 16:19:57,648 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-07-07 16:19:57,668 [ scc.git] DEBUG 8f4b103 remove sphinx job following migration to rtd
2026-07-07 16:19:57,669 [ scc.git] DEBUG Calling 'git submodule status'
2026-07-07 16:19:57,798 [ scc.config] DEBUG Found remote.origin.url
2026-07-07 16:19:58,168 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-fpbioimage HTTP/1.1" 200 None
2026-07-07 16:19:58,692 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-07-07 16:19:59,140 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-07-07 16:19:59,603 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-07-07 16:20:00,069 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-07-07 16:20:00,070 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-07-07 16:20:00,175 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2026-07-07 16:20:00,176 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/ilastik
2026-07-07 16:20:00,176 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-07-07 16:20:00,189 [ scc.git] DEBUG Check current status
2026-07-07 16:20:00,189 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-07-07 16:20:00,209 [ scc.git] DEBUG c0bbd42 Merge pull request #41 from pwalczysko/s3
2026-07-07 16:20:00,210 [ scc.git] DEBUG Calling 'git submodule status'
2026-07-07 16:20:00,324 [ scc.config] DEBUG Found remote.origin.url
2026-07-07 16:20:00,671 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-ilastik HTTP/1.1" 200 None
2026-07-07 16:20:01,194 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-07-07 16:20:01,654 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-07-07 16:20:02,130 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-07-07 16:20:02,589 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-07-07 16:20:02,590 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-07-07 16:20:02,711 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2026-07-07 16:20:02,711 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/introduction
2026-07-07 16:20:02,711 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-07-07 16:20:02,725 [ scc.git] DEBUG Check current status
2026-07-07 16:20:02,725 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-07-07 16:20:02,746 [ scc.git] DEBUG d903363 Merge pull request #26 from jburel/rtd_build
2026-07-07 16:20:02,747 [ scc.git] DEBUG Calling 'git submodule status'
2026-07-07 16:20:02,875 [ scc.config] DEBUG Found remote.origin.url
2026-07-07 16:20:03,348 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-introduction HTTP/1.1" 200 None
2026-07-07 16:20:03,876 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-07-07 16:20:04,413 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-07-07 16:20:04,893 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-07-07 16:20:05,357 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-07-07 16:20:05,358 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-07-07 16:20:05,464 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2026-07-07 16:20:05,465 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/iviewer
2026-07-07 16:20:05,465 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-07-07 16:20:05,478 [ scc.git] DEBUG Check current status
2026-07-07 16:20:05,478 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-07-07 16:20:05,498 [ scc.git] DEBUG 6ed80b3 Merge pull request #13 from jburel/rtd_build
2026-07-07 16:20:05,499 [ scc.git] DEBUG Calling 'git submodule status'
2026-07-07 16:20:05,617 [ scc.config] DEBUG Found remote.origin.url
2026-07-07 16:20:05,971 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-iviewer HTTP/1.1" 200 None
2026-07-07 16:20:06,505 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-07-07 16:20:06,959 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-07-07 16:20:07,445 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-07-07 16:20:07,900 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-07-07 16:20:07,902 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-07-07 16:20:07,999 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2026-07-07 16:20:07,999 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/java
2026-07-07 16:20:07,999 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-07-07 16:20:08,012 [ scc.git] DEBUG Check current status
2026-07-07 16:20:08,012 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-07-07 16:20:08,031 [ scc.git] DEBUG a4b6b55 Remove badge for sphinx
2026-07-07 16:20:08,032 [ scc.git] DEBUG Calling 'git submodule status'
2026-07-07 16:20:08,145 [ scc.config] DEBUG Found remote.origin.url
2026-07-07 16:20:08,530 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-java HTTP/1.1" 200 None
2026-07-07 16:20:09,095 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-07-07 16:20:09,562 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-07-07 16:20:10,031 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-07-07 16:20:10,513 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-07-07 16:20:10,514 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-07-07 16:20:10,605 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2026-07-07 16:20:10,605 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/matlab
2026-07-07 16:20:10,605 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-07-07 16:20:10,617 [ scc.git] DEBUG Check current status
2026-07-07 16:20:10,617 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-07-07 16:20:10,633 [ scc.git] DEBUG ecbd07c Merge pull request #5 from pwalczysko/matlab-online
2026-07-07 16:20:10,634 [ scc.git] DEBUG Calling 'git submodule status'
2026-07-07 16:20:10,743 [ scc.config] DEBUG Found remote.origin.url
2026-07-07 16:20:11,186 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-matlab HTTP/1.1" 200 None
2026-07-07 16:20:11,777 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-07-07 16:20:12,261 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-07-07 16:20:12,719 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-07-07 16:20:13,190 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-07-07 16:20:13,191 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-07-07 16:20:13,299 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2026-07-07 16:20:13,300 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/mde
2026-07-07 16:20:13,300 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-07-07 16:20:13,314 [ scc.git] DEBUG Check current status
2026-07-07 16:20:13,314 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-07-07 16:20:13,332 [ scc.git] DEBUG d43e17f Merge pull request #5 from jburel/rtd_build
2026-07-07 16:20:13,334 [ scc.git] DEBUG Calling 'git submodule status'
2026-07-07 16:20:13,447 [ scc.config] DEBUG Found remote.origin.url
2026-07-07 16:20:13,814 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-mde HTTP/1.1" 200 None
2026-07-07 16:20:14,319 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-07-07 16:20:14,785 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-07-07 16:20:15,257 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-07-07 16:20:15,716 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-07-07 16:20:15,717 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-07-07 16:20:15,822 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2026-07-07 16:20:15,822 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/orbit
2026-07-07 16:20:15,822 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-07-07 16:20:15,834 [ scc.git] DEBUG Check current status
2026-07-07 16:20:15,834 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-07-07 16:20:15,849 [ scc.git] DEBUG 4ef1eaa Update actions to v3 and v4
2026-07-07 16:20:15,850 [ scc.git] DEBUG Calling 'git submodule status'
2026-07-07 16:20:15,952 [ scc.config] DEBUG Found remote.origin.url
2026-07-07 16:20:16,314 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-orbit HTTP/1.1" 200 None
2026-07-07 16:20:16,844 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-07-07 16:20:17,309 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-07-07 16:20:17,780 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-07-07 16:20:18,258 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-07-07 16:20:18,259 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-07-07 16:20:18,374 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2026-07-07 16:20:18,374 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/parade
2026-07-07 16:20:18,375 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-07-07 16:20:18,389 [ scc.git] DEBUG Check current status
2026-07-07 16:20:18,389 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-07-07 16:20:18,410 [ scc.git] DEBUG 908b335 Merge pull request #1 from ome/rtd_build
2026-07-07 16:20:18,411 [ scc.git] DEBUG Calling 'git submodule status'
2026-07-07 16:20:18,522 [ scc.config] DEBUG Found remote.origin.url
2026-07-07 16:20:18,872 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-parade HTTP/1.1" 200 None
2026-07-07 16:20:19,432 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-07-07 16:20:19,980 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-07-07 16:20:20,442 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-07-07 16:20:20,886 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-07-07 16:20:20,887 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-07-07 16:20:20,989 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2026-07-07 16:20:20,989 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/python
2026-07-07 16:20:20,989 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-07-07 16:20:21,000 [ scc.git] DEBUG Check current status
2026-07-07 16:20:21,000 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-07-07 16:20:21,016 [ scc.git] DEBUG 41e4ded Merge pull request #65 from pwalczysko/no-idr
2026-07-07 16:20:21,017 [ scc.git] DEBUG Calling 'git submodule status'
2026-07-07 16:20:21,132 [ scc.config] DEBUG Found remote.origin.url
2026-07-07 16:20:21,499 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-python HTTP/1.1" 200 None
2026-07-07 16:20:22,016 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-07-07 16:20:22,481 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-07-07 16:20:22,939 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-07-07 16:20:23,414 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-07-07 16:20:23,415 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-07-07 16:20:23,525 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2026-07-07 16:20:23,525 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/qupath
2026-07-07 16:20:23,525 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-07-07 16:20:23,541 [ scc.git] DEBUG Check current status
2026-07-07 16:20:23,542 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-07-07 16:20:23,563 [ scc.git] DEBUG 6db8b1c Merge pull request #11 from jburel/installation
2026-07-07 16:20:23,564 [ scc.git] DEBUG Calling 'git submodule status'
2026-07-07 16:20:23,682 [ scc.config] DEBUG Found remote.origin.url
2026-07-07 16:20:24,055 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-qupath HTTP/1.1" 200 None
2026-07-07 16:20:24,698 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-07-07 16:20:25,217 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-07-07 16:20:25,682 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-07-07 16:20:26,150 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-07-07 16:20:26,151 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-07-07 16:20:26,257 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2026-07-07 16:20:26,258 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/r
2026-07-07 16:20:26,258 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-07-07 16:20:26,272 [ scc.git] DEBUG Check current status
2026-07-07 16:20:26,272 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-07-07 16:20:26,291 [ scc.git] DEBUG a770a10 Remove sphinx badge
2026-07-07 16:20:26,292 [ scc.git] DEBUG Calling 'git submodule status'
2026-07-07 16:20:26,409 [ scc.config] DEBUG Found remote.origin.url
2026-07-07 16:20:26,754 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-r HTTP/1.1" 200 None
2026-07-07 16:20:27,270 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-07-07 16:20:27,760 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-07-07 16:20:28,217 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-07-07 16:20:28,677 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-07-07 16:20:28,678 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-07-07 16:20:28,779 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2026-07-07 16:20:28,780 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/scripts
2026-07-07 16:20:28,780 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-07-07 16:20:28,792 [ scc.git] DEBUG Check current status
2026-07-07 16:20:28,792 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-07-07 16:20:28,811 [ scc.git] DEBUG 6133d50 Merge pull request #4 from Rdornier/import-from-csv-fix
2026-07-07 16:20:28,812 [ scc.git] DEBUG Calling 'git submodule status'
2026-07-07 16:20:28,913 [ scc.config] DEBUG Found remote.origin.url
2026-07-07 16:20:29,276 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-scripts HTTP/1.1" 200 None
2026-07-07 16:20:29,770 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-07-07 16:20:30,229 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-07-07 16:20:30,694 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-07-07 16:20:31,176 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-07-07 16:20:31,177 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-07-07 16:20:31,281 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2026-07-07 16:20:31,281 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/trackmate
2026-07-07 16:20:31,282 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-07-07 16:20:31,297 [ scc.git] DEBUG Check current status
2026-07-07 16:20:31,297 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-07-07 16:20:31,318 [ scc.git] DEBUG ffe98a8 Merge pull request #5 from jburel/rtd_build
2026-07-07 16:20:31,319 [ scc.git] DEBUG Calling 'git submodule status'
2026-07-07 16:20:31,426 [ scc.config] DEBUG Found remote.origin.url
2026-07-07 16:20:31,768 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-trackmate HTTP/1.1" 200 None
2026-07-07 16:20:32,284 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-07-07 16:20:32,745 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-07-07 16:20:33,209 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-07-07 16:20:33,708 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-07-07 16:20:33,709 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-07-07 16:20:33,818 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2026-07-07 16:20:33,819 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/upload
2026-07-07 16:20:33,819 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-07-07 16:20:33,835 [ scc.git] DEBUG Check current status
2026-07-07 16:20:33,835 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-07-07 16:20:33,856 [ scc.git] DEBUG 6a5e015 Merge pull request #19 from pwalczysko/update-insight-download
2026-07-07 16:20:33,857 [ scc.git] DEBUG Calling 'git submodule status'
2026-07-07 16:20:33,980 [ scc.config] DEBUG Found remote.origin.url
2026-07-07 16:20:34,382 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-upload HTTP/1.1" 200 None
2026-07-07 16:20:34,912 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-07-07 16:20:35,394 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-07-07 16:20:35,865 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-07-07 16:20:36,327 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-07-07 16:20:36,328 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-07-07 16:20:36,430 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2026-07-07 16:20:36,430 [ scc.git] DEBUG Resetting...
2026-07-07 16:20:36,430 [ scc.git] DEBUG Calling 'git reset --hard HEAD'
2026-07-07 16:20:36,766 [ scc.git] DEBUG HEAD is now at a902a07 merge master -Dorg -Snone
2026-07-07 16:20:36,767 [ scc.git] DEBUG Calling 'git submodule update --recursive'
2026-07-07 16:20:37,078 [ scc.git] DEBUG Submodule path 'download': checked out '4b1b912438f7415faf2d1f618d596968121bcfe8'
2026-07-07 16:20:37,424 [ scc.git] DEBUG Submodule path 'ilastik': checked out 'f7b4afbe7c171a2063a46916851a26a84b83c4e6'
2026-07-07 16:20:38,092 [ scc.git] DEBUG Submodule path 'python': checked out '17536a9e5f83241b2ca7eff9f26ce28b77958cf5'
2026-07-07 16:20:38,325 [ scc.git] DEBUG Check current status
2026-07-07 16:20:38,325 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-07-07 16:20:38,344 [ scc.git] DEBUG a902a07 merge master -Dorg -Snone
2026-07-07 16:20:38,345 [ scc.git] DEBUG Calling 'git submodule status'
2026-07-07 16:20:38,481 [ scc.git] DEBUG 248e8cbfb0372b3d3be2d82cfe9234dd2e25c140 cellprofiler (v0.4.0-32-g248e8cb)
2026-07-07 16:20:38,551 [ scc.git] DEBUG 4b1b912438f7415faf2d1f618d596968121bcfe8 download (4b1b912)
2026-07-07 16:20:38,581 [ scc.git] DEBUG 654d43b5ef64f56bd6a99c69a9c98cbb5c8f76a7 figure (v0.1.0-55-g654d43b)
2026-07-07 16:20:38,609 [ scc.git] DEBUG 86f00e3e570d62226b02da1dc0cc639c389c7104 fiji (v0.2.1-89-g86f00e3)
2026-07-07 16:20:38,688 [ scc.git] DEBUG 8f4b1035592a83dacf55e5cb585fd6ebe775f7f4 fpbioimage (heads/master)
2026-07-07 16:20:38,715 [ scc.git] DEBUG f7b4afbe7c171a2063a46916851a26a84b83c4e6 ilastik (v0.3.4-2-gf7b4afb)
2026-07-07 16:20:38,786 [ scc.git] DEBUG d9033638b26778db35de1c77428190ac4cad1936 introduction (heads/master)
2026-07-07 16:20:38,874 [ scc.git] DEBUG 6ed80b33e8ddc97c930e3ea8ba00702f34e0a8ed iviewer (heads/master)
2026-07-07 16:20:38,910 [ scc.git] DEBUG a4b6b55205d0588c48baa8177aa7608fd40b3f85 java (v0.1.1-17-ga4b6b55)
2026-07-07 16:20:38,947 [ scc.git] DEBUG ecbd07c31df9b103937f4803aa35f104480365f2 matlab (v0.1.0-26-gecbd07c)
2026-07-07 16:20:39,023 [ scc.git] DEBUG d43e17feb8400f35a51d20e050b8a87bcdbcd1eb mde (heads/master)
2026-07-07 16:20:39,091 [ scc.git] DEBUG 4ef1eaaf315bbb8ae56e9ea780971735dc406f46 orbit (heads/master)
2026-07-07 16:20:39,173 [ scc.git] DEBUG 908b3356722bb23aafe103d87f8675f80fbaa5ed parade (heads/master)
2026-07-07 16:20:39,203 [ scc.git] DEBUG 17536a9e5f83241b2ca7eff9f26ce28b77958cf5 python (v0.3.0-105-g17536a9)
2026-07-07 16:20:39,287 [ scc.git] DEBUG 6db8b1ceb6e7a44eb6145b4976fb3e048b04ee4f qupath (heads/master)
2026-07-07 16:20:39,317 [ scc.git] DEBUG a770a1048469668b66f5bde686d5b6d84d021e6d r (v0.1.0-24-ga770a10)
2026-07-07 16:20:39,382 [ scc.git] DEBUG 6133d50509750bccdb809e0089bd5c717357d379 scripts (heads/master)
2026-07-07 16:20:39,454 [ scc.git] DEBUG ffe98a8835c0f1bf345cb9ec0cfd2ba4aa304bd1 trackmate (heads/master)
2026-07-07 16:20:39,471 [ scc.git] DEBUG 6a5e0152c1b372ebb146803c7421c95b42474200 upload (v0.1.0-98-g6a5e015)
2026-07-07 16:20:39,472 [ scc.merge] INFO Merging Pull Request(s) based on master
2026-07-07 16:20:39,472 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
2026-07-07 16:20:39,472 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
2026-07-07 16:20:39,472 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
2026-07-07 16:20:39,472 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
2026-07-07 16:20:39,472 [ scc.merge] INFO Excluding Pull Request(s) without successful status
2026-07-07 16:20:39,472 [ scc.repo] DEBUG ## PRs found:
2026-07-07 16:20:39,797 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides/pulls HTTP/1.1" 200 None
2026-07-07 16:20:40,305 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides/issues/305 HTTP/1.1" 200 None
2026-07-07 16:20:40,306 [ scc.repo] DEBUG # ... Include label: dependencies
2026-07-07 16:20:40,986 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides/commits/150c7210dc5f13e4b062846f400ebc253a2d6f9c?page=1 HTTP/1.1" 200 None
2026-07-07 16:20:41,544 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides/commits/150c7210dc5f13e4b062846f400ebc253a2d6f9c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-07-07 16:20:42,050 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides/commits/150c7210dc5f13e4b062846f400ebc253a2d6f9c?page=1 HTTP/1.1" 200 None
2026-07-07 16:20:42,544 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides/statuses/150c7210dc5f13e4b062846f400ebc253a2d6f9c?per_page=1 HTTP/1.1" 200 None
2026-07-07 16:20:43,074 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides/commits/150c7210dc5f13e4b062846f400ebc253a2d6f9c?page=1 HTTP/1.1" 200 None
2026-07-07 16:20:43,587 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides/commits/150c7210dc5f13e4b062846f400ebc253a2d6f9c/status HTTP/1.1" 200 None
2026-07-07 16:20:43,587 [ scc.repo] DEBUG - PR 305 dependabot[bot] 'Bump parade from `0875cf1` to `908b335`'
2026-07-07 16:20:44,090 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides/issues/304 HTTP/1.1" 200 None
2026-07-07 16:20:44,091 [ scc.repo] DEBUG # ... Include label: dependencies
2026-07-07 16:20:44,746 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides/commits/a94bb77eca798ac020dc0738856bd211a17b958a?page=1 HTTP/1.1" 200 None
2026-07-07 16:20:45,290 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides/commits/a94bb77eca798ac020dc0738856bd211a17b958a/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-07-07 16:20:45,804 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides/commits/a94bb77eca798ac020dc0738856bd211a17b958a?page=1 HTTP/1.1" 200 None
2026-07-07 16:20:46,285 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides/statuses/a94bb77eca798ac020dc0738856bd211a17b958a?per_page=1 HTTP/1.1" 200 None
2026-07-07 16:20:46,811 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides/commits/a94bb77eca798ac020dc0738856bd211a17b958a?page=1 HTTP/1.1" 200 None
2026-07-07 16:20:47,336 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides/commits/a94bb77eca798ac020dc0738856bd211a17b958a/status HTTP/1.1" 200 None
2026-07-07 16:20:47,336 [ scc.repo] DEBUG - PR 304 dependabot[bot] 'Bump python from `5ba303a` to `17536a9`'
2026-07-07 16:20:47,827 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides/issues/303 HTTP/1.1" 200 None
2026-07-07 16:20:47,828 [ scc.repo] DEBUG # ... Include label: dependencies
2026-07-07 16:20:48,459 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides/commits/231cbb7ea1113bb4fde03b88d93ae9426f976e6d?page=1 HTTP/1.1" 200 None
2026-07-07 16:20:48,954 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides/commits/231cbb7ea1113bb4fde03b88d93ae9426f976e6d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-07-07 16:20:49,465 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides/commits/231cbb7ea1113bb4fde03b88d93ae9426f976e6d?page=1 HTTP/1.1" 200 None
2026-07-07 16:20:49,945 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides/statuses/231cbb7ea1113bb4fde03b88d93ae9426f976e6d?per_page=1 HTTP/1.1" 200 None
2026-07-07 16:20:50,442 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides/commits/231cbb7ea1113bb4fde03b88d93ae9426f976e6d?page=1 HTTP/1.1" 200 None
2026-07-07 16:20:51,022 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides/commits/231cbb7ea1113bb4fde03b88d93ae9426f976e6d/status HTTP/1.1" 200 None
2026-07-07 16:20:51,023 [ scc.repo] DEBUG - PR 303 dependabot[bot] 'Bump fiji from `218b05a` to `86f00e3`'
2026-07-07 16:20:51,023 [ scc.repo] DEBUG ## Branches found:
2026-07-07 16:20:51,023 [ scc.git] DEBUG Get sha1 of %s
2026-07-07 16:20:51,023 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-07 16:20:51,037 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-07-07 16:20:51,052 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-07-07 16:20:51,052 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-07-07 16:20:51,072 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-07-07 16:20:51,134 [ scc.git] DEBUG Already up to date.
2026-07-07 16:20:51,134 [ scc.git] DEBUG Calling 'git fetch origin pull/303/head'
2026-07-07 16:20:51,550 [ scc.git] DEBUG From https://github.com/ome/omero-guides
2026-07-07 16:20:51,550 [ scc.git] DEBUG * branch refs/pull/303/head -> FETCH_HEAD
2026-07-07 16:20:51,578 [ scc.git] DEBUG Calling 'git fetch origin pull/304/head'
2026-07-07 16:20:51,979 [ scc.git] DEBUG From https://github.com/ome/omero-guides
2026-07-07 16:20:51,979 [ scc.git] DEBUG * branch refs/pull/304/head -> FETCH_HEAD
2026-07-07 16:20:52,006 [ scc.git] DEBUG Calling 'git fetch origin pull/305/head'
2026-07-07 16:20:52,397 [ scc.git] DEBUG From https://github.com/ome/omero-guides
2026-07-07 16:20:52,397 [ scc.git] DEBUG * branch refs/pull/305/head -> FETCH_HEAD
2026-07-07 16:20:52,421 [ scc.git] DEBUG ## Unique users: []
2026-07-07 16:20:52,421 [ scc.git] DEBUG Get sha1 of %s
2026-07-07 16:20:52,421 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-07 16:20:52,430 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...231cbb7ea1113bb4fde03b88d93ae9426f976e6d'
2026-07-07 16:20:52,450 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-07 16:20:52,459 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 303 (Bump fiji from `218b05a` to `86f00e3`) 231cbb7ea1113bb4fde03b88d93ae9426f976e6d'
2026-07-07 16:20:52,519 [ scc.git] DEBUG Already up to date.
2026-07-07 16:20:52,710 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-07-07 16:20:52,740 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...a94bb77eca798ac020dc0738856bd211a17b958a'
2026-07-07 16:20:52,918 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-07 16:20:53,104 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 304 (Bump python from `5ba303a` to `17536a9`) a94bb77eca798ac020dc0738856bd211a17b958a'
2026-07-07 16:20:53,734 [ scc.git] DEBUG Already up to date.
2026-07-07 16:20:53,938 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-07-07 16:20:53,939 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...150c7210dc5f13e4b062846f400ebc253a2d6f9c'
2026-07-07 16:20:53,960 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-07 16:20:53,970 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 305 (Bump parade from `0875cf1` to `908b335`) 150c7210dc5f13e4b062846f400ebc253a2d6f9c'
2026-07-07 16:20:54,021 [ scc.git] DEBUG Already up to date.
2026-07-07 16:20:54,461 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-07-07 16:20:54,461 [ scc.git] DEBUG Calling 'git submodule update'
2026-07-07 16:20:55,123 [ scc.git] DEBUG Get sha1 of %s
2026-07-07 16:20:55,123 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-07 16:20:55,133 [ scc.repo] DEBUG ## PRs found:
2026-07-07 16:20:55,536 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-cellprofiler/pulls HTTP/1.1" 200 None
2026-07-07 16:20:56,026 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-cellprofiler/issues/25 HTTP/1.1" 200 None
2026-07-07 16:20:56,586 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-cellprofiler/issues/25/comments HTTP/1.1" 200 None
2026-07-07 16:20:57,077 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-cellprofiler/issues/24 HTTP/1.1" 200 None
2026-07-07 16:20:57,615 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-cellprofiler/issues/24/comments HTTP/1.1" 200 None
2026-07-07 16:20:58,219 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-cellprofiler/commits/647d3d34fa15bd7aa6a1437fc63c92be3cbc8b25?page=1 HTTP/1.1" 200 None
2026-07-07 16:20:59,377 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-cellprofiler/commits/647d3d34fa15bd7aa6a1437fc63c92be3cbc8b25/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-07-07 16:21:00,037 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-cellprofiler/commits/647d3d34fa15bd7aa6a1437fc63c92be3cbc8b25?page=1 HTTP/1.1" 200 None
2026-07-07 16:21:00,521 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-cellprofiler/statuses/647d3d34fa15bd7aa6a1437fc63c92be3cbc8b25?per_page=1 HTTP/1.1" 200 2
2026-07-07 16:21:00,522 [ scc.repo] DEBUG - PR 24 jburel 'Remove binder'
2026-07-07 16:21:00,522 [ scc.repo] DEBUG ## Branches found:
2026-07-07 16:21:00,522 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/cellprofiler
2026-07-07 16:21:00,522 [ scc.git] DEBUG Get sha1 of %s
2026-07-07 16:21:00,522 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-07 16:21:00,543 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-07-07 16:21:00,562 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-07-07 16:21:00,562 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-07-07 16:21:00,585 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-07-07 16:21:00,646 [ scc.git] DEBUG Already up to date.
2026-07-07 16:21:00,646 [ scc.git] DEBUG Calling 'git fetch origin pull/24/head'
2026-07-07 16:21:01,269 [ scc.git] DEBUG From https://github.com/ome/omero-guide-cellprofiler
2026-07-07 16:21:01,269 [ scc.git] DEBUG * branch refs/pull/24/head -> FETCH_HEAD
2026-07-07 16:21:01,293 [ scc.git] DEBUG ## Unique users: []
2026-07-07 16:21:01,293 [ scc.git] DEBUG Get sha1 of %s
2026-07-07 16:21:01,293 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-07 16:21:01,307 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...647d3d34fa15bd7aa6a1437fc63c92be3cbc8b25'
2026-07-07 16:21:01,352 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-07 16:21:01,367 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 24 (Remove binder) 647d3d34fa15bd7aa6a1437fc63c92be3cbc8b25'
2026-07-07 16:21:01,591 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-07-07 16:21:01,687 [ scc.git] DEBUG .github/workflows/binder_badge.yml | 25 -------------------------
2026-07-07 16:21:01,688 [ scc.git] DEBUG .github/workflows/build.yml | 27 +++++++++++++++++++++++++++
2026-07-07 16:21:01,688 [ scc.git] DEBUG README.md | 15 ++++++---------
2026-07-07 16:21:01,688 [ scc.git] DEBUG binder/environment.yml | 6 ++++--
2026-07-07 16:21:01,688 [ scc.git] DEBUG 4 files changed, 37 insertions(+), 36 deletions(-)
2026-07-07 16:21:01,688 [ scc.git] DEBUG delete mode 100644 .github/workflows/binder_badge.yml
2026-07-07 16:21:01,688 [ scc.git] DEBUG create mode 100644 .github/workflows/build.yml
2026-07-07 16:21:01,899 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-07-07 16:21:01,900 [ scc.git] DEBUG Calling 'git submodule update'
2026-07-07 16:21:02,015 [ scc.git] DEBUG Get sha1 of %s
2026-07-07 16:21:02,016 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-07 16:21:02,030 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-07-07 16:21:02,135 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-07-07 16:21:02,209 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f528632c950> has no local changes
2026-07-07 16:21:02,209 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-cellprofiler
Excluded PRs:
- PR 25 pwalczysko 'Deprecate the non-save idr0002 notebook and redirect' (stage: draft)
Already up to date.
Merged PRs:
- PR 24 jburel 'Remove binder'
Generated by OMERO-guides-push#2 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-guides-push/2/)'
2026-07-07 16:21:02,343 [ scc.git] DEBUG [detached HEAD b24a8b6] merge master -Dorg -Ssuccess-only
2026-07-07 16:21:02,344 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2026-07-07 16:21:02,344 [ scc.repo] DEBUG ## PRs found:
2026-07-07 16:21:02,582 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-download/pulls HTTP/1.1" 200 2
2026-07-07 16:21:02,582 [ scc.repo] DEBUG ## Branches found:
2026-07-07 16:21:02,582 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/download
2026-07-07 16:21:02,582 [ scc.git] DEBUG Get sha1 of %s
2026-07-07 16:21:02,582 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-07 16:21:02,599 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-07-07 16:21:02,618 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-07-07 16:21:02,618 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-07-07 16:21:02,642 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-07-07 16:21:02,803 [ scc.git] DEBUG Updating 4b1b912..a27d196
2026-07-07 16:21:02,803 [ scc.git] DEBUG ## Unique users: []
2026-07-07 16:21:02,803 [ scc.git] DEBUG Get sha1 of %s
2026-07-07 16:21:02,803 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-07 16:21:02,823 [ scc.git] DEBUG Calling 'git submodule update'
2026-07-07 16:21:02,943 [ scc.git] DEBUG Get sha1 of %s
2026-07-07 16:21:02,943 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-07-07 16:21:02,956 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-07-07 16:21:03,064 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-07-07 16:21:03,165 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f52862cd610> has no local changes
2026-07-07 16:21:03,165 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-download
Updating 4b1b912..a27d196
Previously merged:
Generated by OMERO-guides-push#2 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-guides-push/2/)'
2026-07-07 16:21:03,294 [ scc.git] DEBUG [detached HEAD 6d52efe] merge master -Dorg -Ssuccess-only
2026-07-07 16:21:03,296 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2026-07-07 16:21:03,296 [ scc.repo] DEBUG ## PRs found:
2026-07-07 16:21:03,615 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-figure/pulls HTTP/1.1" 200 None
2026-07-07 16:21:04,092 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-figure/issues/17 HTTP/1.1" 200 None
2026-07-07 16:21:04,701 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-figure/commits/d142504a021b0e7f274520f08eb24796f0663404?page=1 HTTP/1.1" 200 None
2026-07-07 16:21:05,096 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-figure/commits/d142504a021b0e7f274520f08eb24796f0663404/check-suites?app_id=15368&per_page=1 HTTP/1.1" 401 None
2026-07-07 16:21:05,096 [ scc.merge] DEBUG Cleaning remote branches created for merging
2026-07-07 16:21:05,096 [ scc.git] DEBUG Calling 'git remote'
2026-07-07 16:21:05,110 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/cellprofiler
2026-07-07 16:21:05,110 [ scc.git] DEBUG Calling 'git remote'
2026-07-07 16:21:05,126 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2026-07-07 16:21:05,126 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/download
2026-07-07 16:21:05,126 [ scc.git] DEBUG Calling 'git remote'
2026-07-07 16:21:05,143 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2026-07-07 16:21:05,143 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/figure
2026-07-07 16:21:05,143 [ scc.git] DEBUG Calling 'git remote'
2026-07-07 16:21:05,159 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2026-07-07 16:21:05,159 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/fiji
2026-07-07 16:21:05,159 [ scc.git] DEBUG Calling 'git remote'
2026-07-07 16:21:05,173 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2026-07-07 16:21:05,174 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/fpbioimage
2026-07-07 16:21:05,174 [ scc.git] DEBUG Calling 'git remote'
2026-07-07 16:21:05,189 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2026-07-07 16:21:05,189 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/ilastik
2026-07-07 16:21:05,189 [ scc.git] DEBUG Calling 'git remote'
2026-07-07 16:21:05,204 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2026-07-07 16:21:05,204 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/introduction
2026-07-07 16:21:05,204 [ scc.git] DEBUG Calling 'git remote'
2026-07-07 16:21:05,218 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2026-07-07 16:21:05,218 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/iviewer
2026-07-07 16:21:05,218 [ scc.git] DEBUG Calling 'git remote'
2026-07-07 16:21:05,232 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2026-07-07 16:21:05,232 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/java
2026-07-07 16:21:05,232 [ scc.git] DEBUG Calling 'git remote'
2026-07-07 16:21:05,246 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2026-07-07 16:21:05,246 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/matlab
2026-07-07 16:21:05,246 [ scc.git] DEBUG Calling 'git remote'
2026-07-07 16:21:05,260 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2026-07-07 16:21:05,260 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/mde
2026-07-07 16:21:05,261 [ scc.git] DEBUG Calling 'git remote'
2026-07-07 16:21:05,274 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2026-07-07 16:21:05,274 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/orbit
2026-07-07 16:21:05,274 [ scc.git] DEBUG Calling 'git remote'
2026-07-07 16:21:05,289 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2026-07-07 16:21:05,289 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/parade
2026-07-07 16:21:05,289 [ scc.git] DEBUG Calling 'git remote'
2026-07-07 16:21:05,303 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2026-07-07 16:21:05,303 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/python
2026-07-07 16:21:05,303 [ scc.git] DEBUG Calling 'git remote'
2026-07-07 16:21:05,318 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2026-07-07 16:21:05,318 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/qupath
2026-07-07 16:21:05,318 [ scc.git] DEBUG Calling 'git remote'
2026-07-07 16:21:05,332 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2026-07-07 16:21:05,332 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/r
2026-07-07 16:21:05,332 [ scc.git] DEBUG Calling 'git remote'
2026-07-07 16:21:05,346 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2026-07-07 16:21:05,346 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/scripts
2026-07-07 16:21:05,346 [ scc.git] DEBUG Calling 'git remote'
2026-07-07 16:21:05,360 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2026-07-07 16:21:05,360 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/trackmate
2026-07-07 16:21:05,360 [ scc.git] DEBUG Calling 'git remote'
2026-07-07 16:21:05,375 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2026-07-07 16:21:05,375 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/upload
2026-07-07 16:21:05,375 [ scc.git] DEBUG Calling 'git remote'
2026-07-07 16:21:05,389 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
Traceback (most recent call last):
File "/home/omero/workspace/OMERO-guides-push/build/venv/lib64/python3.11/site-packages/scc/main.py", line 64, in entry_point
main("scc", items=[
File "/home/omero/workspace/OMERO-guides-push/build/venv/lib64/python3.11/site-packages/yaclifw/framework.py", line 188, in main
ns.func(ns)
File "/home/omero/workspace/OMERO-guides-push/build/venv/lib64/python3.11/site-packages/scc/git.py", line 3332, in __call__
self.merge(args, self.main_repo)
File "/home/omero/workspace/OMERO-guides-push/build/venv/lib64/python3.11/site-packages/scc/git.py", line 3357, in merge
updated, merge_msg = main_repo.rmerge(
^^^^^^^^^^^^^^^^^
File "/home/omero/workspace/OMERO-guides-push/build/venv/lib64/python3.11/site-packages/scc/git.py", line 1851, in rmerge
submodule_updated, submodule_msg = submodule_repo.rmerge(
^^^^^^^^^^^^^^^^^^^^^^
File "/home/omero/workspace/OMERO-guides-push/build/venv/lib64/python3.11/site-packages/scc/git.py", line 1822, in rmerge
merge_msg += self.origin.find_candidate_pulls(filters)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/omero/workspace/OMERO-guides-push/build/venv/lib64/python3.11/site-packages/scc/git.py", line 930, in find_candidate_pulls
include, exclude_reason = self.filter_pull(pullrequest, filters)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/omero/workspace/OMERO-guides-push/build/venv/lib64/python3.11/site-packages/scc/git.py", line 996, in filter_pull
status_included, reason = self.run_status_filter(pullrequest, filters)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/omero/workspace/OMERO-guides-push/build/venv/lib64/python3.11/site-packages/scc/git.py", line 1034, in run_status_filter
if check_suites.totalCount > 0:
^^^^^^^^^^^^^^^^^^^^^^^
File "/home/omero/workspace/OMERO-guides-push/build/venv/lib64/python3.11/site-packages/github/PaginatedList.py", line 270, in totalCount
headers, data = self.__requester.requestJsonAndCheck(
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/omero/workspace/OMERO-guides-push/build/venv/lib64/python3.11/site-packages/github/Requester.py", line 628, in requestJsonAndCheck
*self.__check(
^^^^^^^^^^^^^
File "/home/omero/workspace/OMERO-guides-push/build/venv/lib64/python3.11/site-packages/github/Requester.py", line 867, in __check
raise self.createException(status, responseHeaders, data)
github.GithubException.BadCredentialsException: 401 {"message": "Bad credentials", "documentation_url": "https://docs.github.com/rest", "status": "401"}
