Started by upstream project "Trigger" build number 119 originally caused by: Started by timer [Pipeline] Start of Pipeline [Pipeline] node Running on testintegration in /home/omero/workspace/OMERO-plugins-push [Pipeline] { [Pipeline] library Loading library recursiveMerge@master Attempting to resolve master from remote references... > git --version # timeout=10 > git --version # 'git version 2.47.3' > git ls-remote -- https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Found match: refs/heads/master revision 654fab96d71411fab33e55b79057bcbf94eef8a2 The recommended git tool is: NONE No credentials specified > git rev-parse --resolve-git-dir /var/jenkins_home/jobs/OMERO-plugins-push/workspace@libs/e9d96de4efbb3e39a2ce24824e54985c7c2760a6ed46c5415ea0aa1fd1e18d41/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Fetching without tags Fetching upstream changes from https://github.com/ome/jenkins-library-recursivemerge.git > git --version # timeout=10 > git --version # 'git version 2.47.3' > git fetch --no-tags --force --progress -- https://github.com/ome/jenkins-library-recursivemerge.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Checking out Revision 654fab96d71411fab33e55b79057bcbf94eef8a2 (master) > git config core.sparsecheckout # timeout=10 > git checkout -f 654fab96d71411fab33e55b79057bcbf94eef8a2 # timeout=10 Commit message: "Merge pull request #18 from jburel/python_311" > git rev-list --no-walk 654fab96d71411fab33e55b79057bcbf94eef8a2 # timeout=10 [Pipeline] checkout The recommended git tool is: NONE No credentials specified Fetching changes from the remote Git repository > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-plugins-push/.git # timeout=10 > git config remote.origin.url https://github.com/ome/omero-plugins.git # timeout=10 Fetching upstream changes from https://github.com/ome/omero-plugins.git > git --version # timeout=10 > git --version # 'git version 2.52.0' > git fetch --tags --force --progress -- https://github.com/ome/omero-plugins.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Checking out Revision 6c8647e73bf88ae05d5ec656f70844a60f6b6e6c (refs/remotes/origin/master) > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 6c8647e73bf88ae05d5ec656f70844a60f6b6e6c # timeout=10 Commit message: "Merge pull request #434 from will-moore/figure" > git rev-list --no-walk 6c8647e73bf88ae05d5ec656f70844a60f6b6e6c # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -fdx # timeout=10 > git submodule foreach --recursive git reset --hard # timeout=10 > git submodule foreach --recursive git clean -fdx # timeout=10 > git remote # timeout=10 > git submodule init # timeout=10 > git submodule sync # timeout=10 > git config --get remote.origin.url # timeout=10 > git submodule init # timeout=10 > git config -f .gitmodules --get-regexp ^submodule\.(.+)\.url # timeout=10 > git config --get submodule.omero-figure.url # timeout=10 > git config -f .gitmodules --get submodule.omero-figure.path # timeout=10 > git config --get submodule.minimal-omero-client.url # timeout=10 > git config -f .gitmodules --get submodule.minimal-omero-client.path # timeout=10 > git config --get submodule.scripts.url # timeout=10 > git config -f .gitmodules --get submodule.scripts.path # timeout=10 > git config --get submodule.omero-test-infra.url # timeout=10 > git config -f .gitmodules --get submodule.omero-test-infra.path # timeout=10 > git config --get submodule.omero-prometheus-tools.url # timeout=10 > git config -f .gitmodules --get submodule.omero-prometheus-tools.path # timeout=10 > git config --get submodule.omero-parade.url # timeout=10 > git config -f .gitmodules --get submodule.omero-parade.path # timeout=10 > git config --get submodule.omero-mapr.url # timeout=10 > git config -f .gitmodules --get submodule.omero-mapr.path # timeout=10 > git config --get submodule.omero-fpbioimage.url # timeout=10 > git config -f .gitmodules --get submodule.omero-fpbioimage.path # timeout=10 > git config --get submodule.omero-iviewer.url # timeout=10 > git config -f .gitmodules --get submodule.omero-iviewer.path # timeout=10 > git config --get submodule.omero-gallery.url # timeout=10 > git config -f .gitmodules --get submodule.omero-gallery.path # timeout=10 > git config --get submodule.rOMERO-gateway.url # timeout=10 > git config -f .gitmodules --get submodule.rOMERO-gateway.path # timeout=10 > git config --get submodule.omero-weberror.url # timeout=10 > git config -f .gitmodules --get submodule.omero-weberror.path # timeout=10 > git config --get submodule.omero-cli-render.url # timeout=10 > git config -f .gitmodules --get submodule.omero-cli-render.path # timeout=10 > git config --get submodule.omero-cli-duplicate.url # timeout=10 > git config -f .gitmodules --get submodule.omero-cli-duplicate.path # timeout=10 > git config --get submodule.omero-metadata.url # timeout=10 > git config -f .gitmodules --get submodule.omero-metadata.path # timeout=10 > git config --get submodule.omero-webtest.url # timeout=10 > git config -f .gitmodules --get submodule.omero-webtest.path # timeout=10 > git config --get submodule.omero-upload.url # timeout=10 > git config -f .gitmodules --get submodule.omero-upload.path # timeout=10 > git config --get submodule.omero-virtual-microscope.url # timeout=10 > git config -f .gitmodules --get submodule.omero-virtual-microscope.path # timeout=10 > git config --get submodule.omero-rois.url # timeout=10 > git config -f .gitmodules --get submodule.omero-rois.path # timeout=10 > git config --get submodule.omero-signup.url # timeout=10 > git config -f .gitmodules --get submodule.omero-signup.path # timeout=10 > git config --get submodule.omero-web-zarr.url # timeout=10 > git config -f .gitmodules --get submodule.omero-web-zarr.path # timeout=10 > git config --get submodule.omero-cli-zarr.url # timeout=10 > git config -f .gitmodules --get submodule.omero-cli-zarr.path # timeout=10 > git config --get submodule.figure.url # timeout=10 > git config -f .gitmodules --get submodule.figure.path # timeout=10 > git submodule update --init --recursive omero-figure # timeout=10 > git submodule update --init --recursive minimal-omero-client # timeout=10 > git submodule update --init --recursive scripts # timeout=10 > git submodule update --init --recursive omero-test-infra # timeout=10 > git submodule update --init --recursive omero-prometheus-tools # timeout=10 > git submodule update --init --recursive omero-parade # timeout=10 > git submodule update --init --recursive omero-mapr # timeout=10 > git submodule update --init --recursive omero-fpbioimage # timeout=10 > git submodule update --init --recursive omero-iviewer # timeout=10 > git submodule update --init --recursive omero-gallery # timeout=10 > git submodule update --init --recursive rOMERO-gateway # timeout=10 > git submodule update --init --recursive omero-weberror # timeout=10 > git submodule update --init --recursive omero-cli-render # timeout=10 > git submodule update --init --recursive omero-cli-duplicate # timeout=10 > git submodule update --init --recursive omero-metadata # timeout=10 > git submodule update --init --recursive omero-webtest # timeout=10 > git submodule update --init --recursive omero-upload # timeout=10 > git submodule update --init --recursive omero-virtual-microscope # timeout=10 > git submodule update --init --recursive omero-rois # timeout=10 > git submodule update --init --recursive omero-signup # timeout=10 > git submodule update --init --recursive omero-web-zarr # timeout=10 > git submodule update --init --recursive omero-cli-zarr # timeout=10 [Pipeline] pwd [Pipeline] copyArtifacts Copied 1 artifact from "OMERO-build-push" build number 100 [Pipeline] sh + pushd build ~/workspace/OMERO-plugins-push/build ~/workspace/OMERO-plugins-push + tar -zxf - + curl -sfL https://github.com/ome/build-infra/archive/master.tar.gz + popd ~/workspace/OMERO-plugins-push + python3.11 -m venv build/venv > git submodule update --init --recursive figure # timeout=10 + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-plugins-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-plugins-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(venv) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + python3.11 -m pip install -U pip Requirement already satisfied: pip in ./build/venv/lib64/python3.11/site-packages (22.3.1) Collecting pip Using cached pip-26.2.1-py3-none-any.whl (1.8 MB) Installing collected packages: pip Attempting uninstall: pip Found existing installation: pip 22.3.1 Uninstalling pip-22.3.1: Successfully uninstalled pip-22.3.1 Successfully installed pip-26.2.1 + python3.11 -m pip install scc Collecting scc Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB) Collecting PyGithub>=1.54 (from scc) Using cached pygithub-2.10.0-py3-none-any.whl.metadata (3.9 kB) Collecting PyYAML>=5.1 (from scc) Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB) Collecting future (from scc) Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) Collecting ruamel.yaml (from scc) Using cached ruamel_yaml-0.19.1-py3-none-any.whl.metadata (16 kB) Collecting ruamel.yaml.jinja2 (from scc) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB) Collecting six (from scc) Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) Collecting urllib3<2 (from scc) Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB) Collecting yaclifw<0.3,>=0.2.0 (from scc) Using cached yaclifw-0.2.0-py3-none-any.whl Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc) Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl.metadata (10.0 kB) Collecting requests>=2.14.0 (from PyGithub>=1.54->scc) Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB) Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached pyjwt-2.15.1-py3-none-any.whl.metadata (3.5 kB) Collecting typing-extensions>=4.5.0 (from PyGithub>=1.54->scc) Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB) Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cryptography-50.0.2-cp311-abi3-manylinux_2_34_x86_64.whl.metadata (4.4 kB) Collecting cffi>=2.0.0 (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cffi-2.1.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (2.5 kB) Collecting pycparser (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached pycparser-3.0-py3-none-any.whl.metadata (8.2 kB) Collecting charset_normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached charset_normalizer-3.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (46 kB) Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached idna-3.20-py3-none-any.whl.metadata (7.2 kB) Collecting certifi>=2023.5.7 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached certifi-2026.7.22-py3-none-any.whl.metadata (2.5 kB) Using cached scc-0.20.0-py3-none-any.whl (48 kB) Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) Using cached pygithub-2.10.0-py3-none-any.whl (455 kB) Using cached pyjwt-2.15.1-py3-none-any.whl (33 kB) Using cached cryptography-50.0.2-cp311-abi3-manylinux_2_34_x86_64.whl (4.8 MB) Using cached cffi-2.1.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (217 kB) Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl (1.4 MB) Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) Using cached requests-2.34.2-py3-none-any.whl (73 kB) Using cached charset_normalizer-3.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (269 kB) Using cached idna-3.20-py3-none-any.whl (69 kB) Using cached certifi-2026.7.22-py3-none-any.whl (136 kB) Using cached typing_extensions-4.16.0-py3-none-any.whl (45 kB) Using cached future-1.0.0-py3-none-any.whl (491 kB) Using cached pycparser-3.0-py3-none-any.whl (48 kB) Using cached ruamel_yaml-0.19.1-py3-none-any.whl (118 kB) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB) Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) Installing collected packages: urllib3, typing-extensions, six, ruamel.yaml, PyYAML, pyjwt, pycparser, idna, future, charset_normalizer, certifi, yaclifw, ruamel.yaml.jinja2, requests, cffi, pynacl, cryptography, PyGithub, scc Successfully installed PyGithub-2.10.0 PyYAML-6.0.3 certifi-2026.7.22 cffi-2.1.1 charset_normalizer-3.5.2 cryptography-50.0.2 future-1.0.0 idna-3.20 pycparser-3.0 pyjwt-2.15.1 pynacl-1.6.2 requests-2.34.2 ruamel.yaml-0.19.1 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.17.0 typing-extensions-4.16.0 urllib3-1.26.20 yaclifw-0.2.0 [Pipeline] sh + export BASE_REPO=omero-plugins.git + BASE_REPO=omero-plugins.git + export BASE_BRANCH=master + BASE_BRANCH=master + export VERSION_LOG=/home/omero/workspace/OMERO-plugins-push/build/version.tsv + VERSION_LOG=/home/omero/workspace/OMERO-plugins-push/build/version.tsv + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-plugins-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-plugins-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(venv) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + '[' merge_ci '!=' null ']' + export PUSH_BRANCH=merge_ci + PUSH_BRANCH=merge_ci + '[' null '!=' null ']' + export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment' + STATUS=success-only + MERGE_OPTIONS='-vvv --no-ask --reset --comment' + bash build/build-infra-master/recursive-merge Merge base repository (no submodule updates) 2026-10-04 23:38:29,192 [ scc.config] DEBUG Found github.token 2026-10-04 23:38:29,193 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2026-10-04 23:38:29,423 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:38:29,854 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:38:30,276 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2026-10-04 23:38:30,277 [ scc.gh] DEBUG 5000 remaining from 5000 (Reset at 00:10 2026-10-04 23:38:30,277 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-10-04 23:38:30,291 [ scc.git] DEBUG Check current status 2026-10-04 23:38:30,291 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-04 23:38:30,312 [ scc.git] DEBUG 6c8647e Merge pull request #434 from will-moore/figure 2026-10-04 23:38:30,313 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-04 23:38:30,542 [ scc.git] DEBUG 393587512d75ac33d3e750a46847ab074bfb435f figure (heads/master) 2026-10-04 23:38:30,643 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master) 2026-10-04 23:38:30,726 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2026-10-04 23:38:30,782 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c) 2026-10-04 23:38:30,838 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587) 2026-10-04 23:38:30,932 [ scc.git] DEBUG fb316a7ee6ca8aa5bc8dc55dd0acfa88fe3ca228 omero-figure (v7.2.0-1-gfb316a7e) 2026-10-04 23:38:30,986 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2026-10-04 23:38:31,064 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2026-10-04 23:38:31,210 [ scc.git] DEBUG b4102d46958a805cacff0c7ccceb05ccff746309 omero-iviewer (v0.15.0-1-gb4102d46) 2026-10-04 23:38:31,278 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2026-10-04 23:38:31,343 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c) 2026-10-04 23:38:31,396 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2026-10-04 23:38:31,431 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2026-10-04 23:38:31,487 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2026-10-04 23:38:31,547 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2026-10-04 23:38:31,606 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6) 2026-10-04 23:38:31,649 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2026-10-04 23:38:31,738 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2026-10-04 23:38:31,793 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313) 2026-10-04 23:38:31,861 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2026-10-04 23:38:31,921 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2026-10-04 23:38:31,960 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2026-10-04 23:38:31,984 [ scc.git] DEBUG 312afbed633613e1f728a1fe9eaac096e54318e0 scripts (v5.8.3-1-g312afbe) 2026-10-04 23:38:31,994 [ scc.config] DEBUG Found remote.origin.url 2026-10-04 23:38:32,293 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins HTTP/1.1" 200 None 2026-10-04 23:38:32,811 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-10-04 23:38:33,256 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-10-04 23:38:33,703 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-10-04 23:38:34,155 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-10-04 23:38:34,157 [ scc.git] DEBUG Resetting... 2026-10-04 23:38:34,157 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2026-10-04 23:38:34,494 [ scc.git] DEBUG HEAD is now at 6c8647e Merge pull request #434 from will-moore/figure 2026-10-04 23:38:34,495 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2026-10-04 23:38:35,717 [ scc.git] DEBUG Check current status 2026-10-04 23:38:35,717 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-04 23:38:35,735 [ scc.git] DEBUG 6c8647e Merge pull request #434 from will-moore/figure 2026-10-04 23:38:35,736 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-04 23:38:35,932 [ scc.git] DEBUG 393587512d75ac33d3e750a46847ab074bfb435f figure (heads/master) 2026-10-04 23:38:36,009 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master) 2026-10-04 23:38:36,044 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2026-10-04 23:38:36,077 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c) 2026-10-04 23:38:36,115 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587) 2026-10-04 23:38:36,173 [ scc.git] DEBUG fb316a7ee6ca8aa5bc8dc55dd0acfa88fe3ca228 omero-figure (v7.2.0-1-gfb316a7e) 2026-10-04 23:38:36,209 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2026-10-04 23:38:36,248 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2026-10-04 23:38:36,325 [ scc.git] DEBUG b4102d46958a805cacff0c7ccceb05ccff746309 omero-iviewer (v0.15.0-1-gb4102d46) 2026-10-04 23:38:36,365 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2026-10-04 23:38:36,406 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c) 2026-10-04 23:38:36,441 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2026-10-04 23:38:36,471 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2026-10-04 23:38:36,506 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2026-10-04 23:38:36,539 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2026-10-04 23:38:36,579 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6) 2026-10-04 23:38:36,616 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2026-10-04 23:38:36,654 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2026-10-04 23:38:36,690 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313) 2026-10-04 23:38:36,721 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2026-10-04 23:38:36,755 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2026-10-04 23:38:36,790 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2026-10-04 23:38:36,813 [ scc.git] DEBUG 312afbed633613e1f728a1fe9eaac096e54318e0 scripts (v5.8.3-1-g312afbe) 2026-10-04 23:38:36,814 [ scc.merge] INFO Merging Pull Request(s) based on master 2026-10-04 23:38:36,814 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2026-10-04 23:38:36,814 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2026-10-04 23:38:36,814 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2026-10-04 23:38:36,814 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2026-10-04 23:38:36,814 [ scc.repo] DEBUG ## PRs found: 2026-10-04 23:38:37,126 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/pulls HTTP/1.1" 200 None 2026-10-04 23:38:37,662 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/433 HTTP/1.1" 200 None 2026-10-04 23:38:37,663 [ scc.repo] DEBUG # ... Include label: dependencies 2026-10-04 23:38:37,663 [ scc.repo] DEBUG - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2026-10-04 23:38:38,169 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/432 HTTP/1.1" 200 None 2026-10-04 23:38:38,169 [ scc.repo] DEBUG # ... Include label: dependencies 2026-10-04 23:38:38,169 [ scc.repo] DEBUG - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2026-10-04 23:38:38,699 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/429 HTTP/1.1" 200 None 2026-10-04 23:38:38,700 [ scc.repo] DEBUG # ... Include label: dependencies 2026-10-04 23:38:38,700 [ scc.repo] DEBUG - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2026-10-04 23:38:38,700 [ scc.repo] DEBUG ## Branches found: 2026-10-04 23:38:38,700 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:38:38,700 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:38:38,712 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-10-04 23:38:38,726 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-10-04 23:38:38,726 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-10-04 23:38:38,750 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-10-04 23:38:38,800 [ scc.git] DEBUG Already up to date. 2026-10-04 23:38:38,800 [ scc.git] DEBUG Calling 'git fetch origin pull/429/head' 2026-10-04 23:38:39,209 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-10-04 23:38:39,209 [ scc.git] DEBUG * branch refs/pull/429/head -> FETCH_HEAD 2026-10-04 23:38:39,237 [ scc.git] DEBUG Calling 'git fetch origin pull/432/head' 2026-10-04 23:38:39,627 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-10-04 23:38:39,627 [ scc.git] DEBUG * branch refs/pull/432/head -> FETCH_HEAD 2026-10-04 23:38:39,654 [ scc.git] DEBUG Calling 'git fetch origin pull/433/head' 2026-10-04 23:38:40,042 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-10-04 23:38:40,042 [ scc.git] DEBUG * branch refs/pull/433/head -> FETCH_HEAD 2026-10-04 23:38:40,071 [ scc.git] DEBUG ## Unique users: [] 2026-10-04 23:38:40,071 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:38:40,071 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:38:40,083 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2026-10-04 23:38:40,109 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:38:40,119 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 429 (Bump scripts from `312afbe` to `4b4c755`) 3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2026-10-04 23:38:40,806 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-04 23:38:40,864 [ scc.git] DEBUG scripts | 2 +- 2026-10-04 23:38:40,864 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-10-04 23:38:41,041 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:38:41,042 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25bf90a85a7e0945e652f9d78050c8c4860acb51' 2026-10-04 23:38:41,072 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:38:41,081 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 432 (Bump omero-figure from `fb316a7` to `9cc36cd`) 25bf90a85a7e0945e652f9d78050c8c4860acb51' 2026-10-04 23:38:41,815 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-04 23:38:41,876 [ scc.git] DEBUG omero-figure | 2 +- 2026-10-04 23:38:41,876 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-10-04 23:38:42,070 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:38:42,071 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6fd5dc72efc90d7f749b332dba3f903414852d74' 2026-10-04 23:38:42,109 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:38:42,119 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 433 (Bump omero-iviewer from `b4102d4` to `7a798ce`) 6fd5dc72efc90d7f749b332dba3f903414852d74' 2026-10-04 23:38:42,825 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-04 23:38:42,901 [ scc.git] DEBUG omero-iviewer | 2 +- 2026-10-04 23:38:42,901 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-10-04 23:38:43,088 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:38:43,089 [ scc.git] DEBUG Calling 'git submodule update' 2026-10-04 23:38:43,976 [ scc.git] DEBUG Submodule path 'omero-figure': checked out '9cc36cde05bde4def7b62b07c2e9ae5f66712e96' 2026-10-04 23:38:45,073 [ scc.git] DEBUG Submodule path 'omero-iviewer': checked out '7a798ceeb3926d049d73788555fb63269a071052' 2026-10-04 23:38:45,374 [ scc.git] DEBUG Submodule path 'scripts': checked out '4b4c755af4ccf8a5e709548d1f8415fab48a4867' 2026-10-04 23:38:45,375 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:38:45,376 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:38:45,385 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-10-04 23:38:47,879 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f20d854c490> has no local changes 2026-10-04 23:38:47,880 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone Repository: ome/omero-plugins Already up to date. Merged PRs: - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' Generated by OMERO-plugins-push#100 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/100/)' 2026-10-04 23:38:49,255 [ scc.git] DEBUG [detached HEAD b4a53e4] merge master -Dorg -Snone 2026-10-04 23:38:49,257 [ scc.merge] INFO Repository: ome/omero-plugins 2026-10-04 23:38:49,257 [ scc.merge] INFO Already up to date. 2026-10-04 23:38:49,257 [ scc.merge] INFO 2026-10-04 23:38:49,257 [ scc.merge] INFO Merged PRs: 2026-10-04 23:38:49,257 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2026-10-04 23:38:49,257 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2026-10-04 23:38:49,257 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2026-10-04 23:38:49,257 [ scc.merge] INFO 2026-10-04 23:38:49,257 [ scc.merge] DEBUG Cleaning remote branches created for merging 2026-10-04 23:38:49,257 [ scc.git] DEBUG Calling 'git remote' Synchronizing submodule url for 'figure' Synchronizing submodule url for 'minimal-omero-client' Synchronizing submodule url for 'omero-cli-duplicate' Synchronizing submodule url for 'omero-cli-render' Synchronizing submodule url for 'omero-cli-zarr' Synchronizing submodule url for 'omero-figure' Synchronizing submodule url for 'omero-fpbioimage' Synchronizing submodule url for 'omero-gallery' Synchronizing submodule url for 'omero-iviewer' Synchronizing submodule url for 'omero-mapr' Synchronizing submodule url for 'omero-metadata' Synchronizing submodule url for 'omero-parade' Synchronizing submodule url for 'omero-prometheus-tools' Synchronizing submodule url for 'omero-rois' Synchronizing submodule url for 'omero-signup' Synchronizing submodule url for 'omero-test-infra' Synchronizing submodule url for 'omero-upload' Synchronizing submodule url for 'omero-virtual-microscope' Synchronizing submodule url for 'omero-web-zarr' Synchronizing submodule url for 'omero-weberror' Synchronizing submodule url for 'omero-webtest' Synchronizing submodule url for 'rOMERO-gateway' Synchronizing submodule url for 'scripts' Submodule path 'figure': checked out 'e92b4e84a8feb8ad1dd4a68318c8dc0f6c0e0ef1' Submodule path 'omero-cli-render': checked out '68b73035cf2ab21ddd92022b80bda0966547b3c8' Submodule path 'omero-cli-zarr': checked out 'd5f88d80a2b1a3eacda64b591e1cfe6df4f51a82' From https://github.com/ome/omero-figure * [new branch] dependabot/npm_and_yarn/dompurify-3.4.16 -> origin/dependabot/npm_and_yarn/dompurify-3.4.16 Submodule path 'omero-figure': checked out '3195c3df4e7bf2507d9c942d5d8c9a8566498147' Submodule path 'omero-iviewer': checked out '0a836211ba48a84aff07486e3d18cfe9c5f52e76' Submodule path 'omero-metadata': checked out '6a653e49e3589ccb463166506896639f6f0a5a2b' Submodule path 'omero-rois': checked out 'fc9ff96901ce7b92e3ba51327ba7ba64fff76959' Submodule path 'omero-test-infra': checked out 'c8a0015b0ce72ee0a49e6968af33de10ea00bc77' Submodule path 'omero-virtual-microscope': checked out '160d894dfb61e69618903425b340c7888f3a934f' Submodule path 'omero-web-zarr': checked out '4e1e685dff22136abfd2626f6fd6eaf985aba368' Submodule path 'scripts': checked out '5b4d76862a7141257c9ff221ff7f009f7ec416c0' Merge all submodules using repository configuration: base-branch: master submodules: scripts: base-branch: develop omero-web-zarr: base-branch: main 2026-10-04 23:39:11,505 [ scc.config] DEBUG Found github.token 2026-10-04 23:39:11,507 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2026-10-04 23:39:11,742 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:39:12,172 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:39:12,603 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2026-10-04 23:39:12,604 [ scc.gh] DEBUG 5000 remaining from 5000 (Reset at 00:10 2026-10-04 23:39:12,604 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-10-04 23:39:12,616 [ scc.git] DEBUG Check current status 2026-10-04 23:39:12,616 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-04 23:39:12,638 [ scc.git] DEBUG b4a53e4 merge master -Dorg -Snone 2026-10-04 23:39:12,639 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-04 23:39:12,843 [ scc.git] DEBUG +e92b4e84a8feb8ad1dd4a68318c8dc0f6c0e0ef1 figure (remotes/origin/HEAD) 2026-10-04 23:39:12,930 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master) 2026-10-04 23:39:12,971 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2026-10-04 23:39:13,005 [ scc.git] DEBUG +68b73035cf2ab21ddd92022b80bda0966547b3c8 omero-cli-render (v0.8.1-28-g68b7303) 2026-10-04 23:39:13,048 [ scc.git] DEBUG +d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82 omero-cli-zarr (v0.9.0-1-gd5f88d8) 2026-10-04 23:39:13,107 [ scc.git] DEBUG +3195c3df4e7bf2507d9c942d5d8c9a8566498147 omero-figure (v8.0.1-1-g3195c3df) 2026-10-04 23:39:13,141 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2026-10-04 23:39:13,174 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2026-10-04 23:39:13,252 [ scc.git] DEBUG +0a836211ba48a84aff07486e3d18cfe9c5f52e76 omero-iviewer (v0.19.1-1-g0a836211) 2026-10-04 23:39:13,290 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2026-10-04 23:39:13,341 [ scc.git] DEBUG +6a653e49e3589ccb463166506896639f6f0a5a2b omero-metadata (v0.14.0-2-g6a653e4) 2026-10-04 23:39:13,380 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2026-10-04 23:39:13,418 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2026-10-04 23:39:13,457 [ scc.git] DEBUG +fc9ff96901ce7b92e3ba51327ba7ba64fff76959 omero-rois (v0.4.1-1-gfc9ff96) 2026-10-04 23:39:13,495 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2026-10-04 23:39:13,533 [ scc.git] DEBUG +c8a0015b0ce72ee0a49e6968af33de10ea00bc77 omero-test-infra (v0.6.3-67-gc8a0015) 2026-10-04 23:39:13,568 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2026-10-04 23:39:13,603 [ scc.git] DEBUG +160d894dfb61e69618903425b340c7888f3a934f omero-virtual-microscope (v1.1.1-12-g160d894) 2026-10-04 23:39:13,633 [ scc.git] DEBUG +4e1e685dff22136abfd2626f6fd6eaf985aba368 omero-web-zarr (v0.1.1-13-g4e1e685) 2026-10-04 23:39:13,664 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2026-10-04 23:39:13,697 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2026-10-04 23:39:13,730 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2026-10-04 23:39:13,751 [ scc.git] DEBUG +5b4d76862a7141257c9ff221ff7f009f7ec416c0 scripts (v5.10.0-1-g5b4d768) 2026-10-04 23:39:13,760 [ scc.config] DEBUG Found remote.origin.url 2026-10-04 23:39:13,760 [ scc.git] DEBUG Reading repository configuration from repositories.yml 2026-10-04 23:39:13,763 [ scc.git] DEBUG Repository configuration: base-branch: master submodules: omero-web-zarr: base-branch: main scripts: base-branch: develop 2026-10-04 23:39:14,054 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins HTTP/1.1" 200 None 2026-10-04 23:39:14,547 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-10-04 23:39:15,002 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-10-04 23:39:15,456 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-10-04 23:39:15,930 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-10-04 23:39:15,932 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-04 23:39:16,104 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/figure 2026-10-04 23:39:16,104 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-10-04 23:39:16,115 [ scc.git] DEBUG Check current status 2026-10-04 23:39:16,115 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-04 23:39:16,150 [ scc.git] DEBUG e92b4e8 Merge pull request #20 from will-moore/hide_export_dropdown_unless_omero 2026-10-04 23:39:16,150 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-04 23:39:16,271 [ scc.config] DEBUG Found remote.origin.url 2026-10-04 23:39:16,551 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure HTTP/1.1" 200 None 2026-10-04 23:39:17,037 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-10-04 23:39:17,501 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-10-04 23:39:17,952 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-10-04 23:39:18,407 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-10-04 23:39:18,408 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-04 23:39:18,510 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:39:18,510 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client 2026-10-04 23:39:18,510 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-10-04 23:39:18,523 [ scc.git] DEBUG Check current status 2026-10-04 23:39:18,523 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-04 23:39:18,540 [ scc.git] DEBUG ca8c2ea Merge pull request #67 from jburel/gateway_5_10_0 2026-10-04 23:39:18,541 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-04 23:39:18,652 [ scc.config] DEBUG Found remote.origin.url 2026-10-04 23:39:18,945 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/minimal-omero-client HTTP/1.1" 200 None 2026-10-04 23:39:19,437 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-10-04 23:39:19,881 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-10-04 23:39:20,345 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-10-04 23:39:20,795 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-10-04 23:39:20,797 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-04 23:39:20,900 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:39:20,900 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate 2026-10-04 23:39:20,901 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-10-04 23:39:20,914 [ scc.git] DEBUG Check current status 2026-10-04 23:39:20,914 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-04 23:39:20,933 [ scc.git] DEBUG 4777ef8 Merge pull request #27 from jburel/build 2026-10-04 23:39:20,933 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-04 23:39:21,043 [ scc.config] DEBUG Found remote.origin.url 2026-10-04 23:39:21,328 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate HTTP/1.1" 200 None 2026-10-04 23:39:21,889 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-10-04 23:39:22,339 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-10-04 23:39:22,784 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-10-04 23:39:23,237 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-10-04 23:39:23,238 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-04 23:39:23,352 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:39:23,353 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render 2026-10-04 23:39:23,353 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-10-04 23:39:23,366 [ scc.git] DEBUG Check current status 2026-10-04 23:39:23,366 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-04 23:39:23,385 [ scc.git] DEBUG 68b7303 Merge pull request #74 from jburel/changelog2ghrelease 2026-10-04 23:39:23,386 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-04 23:39:23,510 [ scc.config] DEBUG Found remote.origin.url 2026-10-04 23:39:23,805 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render HTTP/1.1" 200 None 2026-10-04 23:39:24,295 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-10-04 23:39:24,733 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-10-04 23:39:25,193 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-10-04 23:39:25,673 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-10-04 23:39:25,675 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-04 23:39:25,792 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:39:25,792 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr 2026-10-04 23:39:25,793 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-10-04 23:39:25,807 [ scc.git] DEBUG Check current status 2026-10-04 23:39:25,807 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-04 23:39:25,830 [ scc.git] DEBUG d5f88d8 Bump version: 0.9.0 → 0.9.1.dev0 2026-10-04 23:39:25,831 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-04 23:39:25,957 [ scc.config] DEBUG Found remote.origin.url 2026-10-04 23:39:26,251 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr HTTP/1.1" 200 None 2026-10-04 23:39:26,755 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-10-04 23:39:27,209 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-10-04 23:39:27,654 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-10-04 23:39:28,118 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-10-04 23:39:28,119 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-04 23:39:28,220 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:39:28,221 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure 2026-10-04 23:39:28,222 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-10-04 23:39:28,235 [ scc.git] DEBUG Check current status 2026-10-04 23:39:28,235 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-04 23:39:28,263 [ scc.git] DEBUG 3195c3df Bump version: 8.0.1 → 8.0.2.dev0 2026-10-04 23:39:28,265 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-04 23:39:28,376 [ scc.config] DEBUG Found remote.origin.url 2026-10-04 23:39:28,652 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure HTTP/1.1" 200 None 2026-10-04 23:39:29,129 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-10-04 23:39:29,567 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-10-04 23:39:30,011 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-10-04 23:39:30,474 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-10-04 23:39:30,476 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-04 23:39:30,582 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:39:30,582 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage 2026-10-04 23:39:30,582 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-10-04 23:39:30,596 [ scc.git] DEBUG Check current status 2026-10-04 23:39:30,596 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-04 23:39:30,639 [ scc.git] DEBUG 3b6c05a Merge pull request #30 from jburel/build 2026-10-04 23:39:30,639 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-04 23:39:30,768 [ scc.config] DEBUG Found remote.origin.url 2026-10-04 23:39:31,059 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage HTTP/1.1" 200 None 2026-10-04 23:39:31,539 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-10-04 23:39:32,004 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-10-04 23:39:32,445 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-10-04 23:39:32,939 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-10-04 23:39:32,941 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-04 23:39:33,055 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:39:33,056 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery 2026-10-04 23:39:33,056 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-10-04 23:39:33,070 [ scc.git] DEBUG Check current status 2026-10-04 23:39:33,070 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-04 23:39:33,090 [ scc.git] DEBUG 2a621da Merge pull request #112 from jburel/build 2026-10-04 23:39:33,091 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-04 23:39:33,219 [ scc.config] DEBUG Found remote.origin.url 2026-10-04 23:39:33,507 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery HTTP/1.1" 200 None 2026-10-04 23:39:34,018 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-10-04 23:39:34,463 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-10-04 23:39:34,926 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-10-04 23:39:35,369 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-10-04 23:39:35,371 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-04 23:39:35,495 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:39:35,496 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer 2026-10-04 23:39:35,497 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-10-04 23:39:35,510 [ scc.git] DEBUG Check current status 2026-10-04 23:39:35,510 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-04 23:39:35,538 [ scc.git] DEBUG 0a836211 Add dev to version 2026-10-04 23:39:35,540 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-04 23:39:35,659 [ scc.config] DEBUG Found remote.origin.url 2026-10-04 23:39:35,942 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer HTTP/1.1" 200 None 2026-10-04 23:39:36,449 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-10-04 23:39:36,902 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-10-04 23:39:37,344 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-10-04 23:39:37,785 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-10-04 23:39:37,787 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-04 23:39:37,884 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:39:37,885 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr 2026-10-04 23:39:37,885 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-10-04 23:39:37,898 [ scc.git] DEBUG Check current status 2026-10-04 23:39:37,898 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-04 23:39:37,916 [ scc.git] DEBUG 0a557da Bump version: 0.5.3 → 0.5.4.dev0 2026-10-04 23:39:37,917 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-04 23:39:38,029 [ scc.config] DEBUG Found remote.origin.url 2026-10-04 23:39:38,316 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr HTTP/1.1" 200 None 2026-10-04 23:39:38,912 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-10-04 23:39:39,373 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-10-04 23:39:39,815 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-10-04 23:39:40,261 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-10-04 23:39:40,262 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-04 23:39:40,372 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:39:40,373 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata 2026-10-04 23:39:40,373 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-10-04 23:39:40,386 [ scc.git] DEBUG Check current status 2026-10-04 23:39:40,386 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-04 23:39:40,408 [ scc.git] DEBUG 6a653e4 Fix workflow permission indentation 2026-10-04 23:39:40,409 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-04 23:39:40,519 [ scc.config] DEBUG Found remote.origin.url 2026-10-04 23:39:40,808 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata HTTP/1.1" 200 None 2026-10-04 23:39:41,358 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-10-04 23:39:41,810 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-10-04 23:39:42,269 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-10-04 23:39:42,715 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-10-04 23:39:42,716 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-04 23:39:45,273 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:39:45,274 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade 2026-10-04 23:39:45,274 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-10-04 23:39:45,290 [ scc.git] DEBUG Check current status 2026-10-04 23:39:45,290 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-04 23:39:45,311 [ scc.git] DEBUG fb5ae86 Merge pull request #133 from jburel/build 2026-10-04 23:39:45,312 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-04 23:39:45,446 [ scc.config] DEBUG Found remote.origin.url 2026-10-04 23:39:45,734 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade HTTP/1.1" 200 None 2026-10-04 23:39:46,213 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-10-04 23:39:46,675 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-10-04 23:39:47,134 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-10-04 23:39:47,590 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-10-04 23:39:47,592 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-04 23:39:47,701 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:39:47,702 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools 2026-10-04 23:39:47,703 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-10-04 23:39:47,716 [ scc.git] DEBUG Check current status 2026-10-04 23:39:47,716 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-04 23:39:47,759 [ scc.git] DEBUG eb47378 Merge pull request #15 from jburel/build 2026-10-04 23:39:47,760 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-04 23:39:47,881 [ scc.config] DEBUG Found remote.origin.url 2026-10-04 23:39:48,160 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools HTTP/1.1" 200 None 2026-10-04 23:39:48,694 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-10-04 23:39:49,350 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-10-04 23:39:49,801 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-10-04 23:39:50,242 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-10-04 23:39:50,243 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-04 23:39:50,368 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:39:50,368 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois 2026-10-04 23:39:50,369 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-10-04 23:39:50,385 [ scc.git] DEBUG Check current status 2026-10-04 23:39:50,385 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-04 23:39:50,407 [ scc.git] DEBUG fc9ff96 Bump version: 0.4.1 → 0.4.2.dev0 2026-10-04 23:39:50,408 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-04 23:39:50,539 [ scc.config] DEBUG Found remote.origin.url 2026-10-04 23:39:50,814 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois HTTP/1.1" 200 None 2026-10-04 23:39:51,299 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-10-04 23:39:51,743 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-10-04 23:39:52,198 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-10-04 23:39:52,645 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-10-04 23:39:52,646 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-04 23:39:52,763 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:39:52,763 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup 2026-10-04 23:39:52,764 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-10-04 23:39:52,777 [ scc.git] DEBUG Check current status 2026-10-04 23:39:52,777 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-04 23:39:52,798 [ scc.git] DEBUG be76813 Merge pull request #21 from jburel/build 2026-10-04 23:39:52,799 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-04 23:39:52,916 [ scc.config] DEBUG Found remote.origin.url 2026-10-04 23:39:53,198 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup HTTP/1.1" 200 None 2026-10-04 23:39:53,694 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-10-04 23:39:54,141 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-10-04 23:39:54,601 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-10-04 23:39:55,091 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-10-04 23:39:55,093 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-04 23:39:55,202 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:39:55,202 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra 2026-10-04 23:39:55,203 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-10-04 23:39:55,218 [ scc.git] DEBUG Check current status 2026-10-04 23:39:55,218 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-04 23:39:55,239 [ scc.git] DEBUG c8a0015 Merge pull request #84 from joshmoore/fix-port-readme 2026-10-04 23:39:55,239 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-04 23:39:55,359 [ scc.config] DEBUG Found remote.origin.url 2026-10-04 23:39:55,577 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-test-infra HTTP/1.1" 301 198 Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 2026-10-04 23:39:55,578 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 2026-10-04 23:39:55,877 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/111908919 HTTP/1.1" 200 None 2026-10-04 23:39:56,357 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-10-04 23:39:56,822 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-10-04 23:39:57,276 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-10-04 23:39:57,728 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-10-04 23:39:57,730 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-04 23:39:57,849 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:39:57,850 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload 2026-10-04 23:39:57,851 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-10-04 23:39:57,865 [ scc.git] DEBUG Check current status 2026-10-04 23:39:57,865 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-04 23:39:57,881 [ scc.git] DEBUG 100f6ae Merge pull request #13 from jburel/build 2026-10-04 23:39:57,882 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-04 23:39:58,007 [ scc.config] DEBUG Found remote.origin.url 2026-10-04 23:39:58,318 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload HTTP/1.1" 200 None 2026-10-04 23:39:58,793 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-10-04 23:39:59,239 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-10-04 23:39:59,747 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-10-04 23:40:00,187 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-10-04 23:40:00,188 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-04 23:40:00,302 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:40:00,302 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope 2026-10-04 23:40:00,303 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-10-04 23:40:00,319 [ scc.git] DEBUG Check current status 2026-10-04 23:40:00,319 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-04 23:40:00,338 [ scc.git] DEBUG 160d894 Fix display of code 2026-10-04 23:40:00,339 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-04 23:40:00,460 [ scc.config] DEBUG Found remote.origin.url 2026-10-04 23:40:00,961 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope HTTP/1.1" 200 None 2026-10-04 23:40:01,474 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-10-04 23:40:01,996 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-10-04 23:40:02,466 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-10-04 23:40:02,932 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-10-04 23:40:02,933 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-04 23:40:03,063 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:40:03,063 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr 2026-10-04 23:40:03,064 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-10-04 23:40:03,081 [ scc.git] DEBUG Check current status 2026-10-04 23:40:03,082 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-04 23:40:03,103 [ scc.git] DEBUG 4e1e685 Merge pull request #23 from lubianat/patch-1 2026-10-04 23:40:03,104 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-04 23:40:03,230 [ scc.config] DEBUG Found remote.origin.url 2026-10-04 23:40:03,230 [ scc.git] DEBUG Repository configuration: base-branch: main 2026-10-04 23:40:03,508 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr HTTP/1.1" 200 None 2026-10-04 23:40:04,031 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-10-04 23:40:04,487 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-10-04 23:40:04,967 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-10-04 23:40:05,411 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-10-04 23:40:05,412 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-04 23:40:05,528 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:40:05,529 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror 2026-10-04 23:40:05,529 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-10-04 23:40:05,547 [ scc.git] DEBUG Check current status 2026-10-04 23:40:05,547 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-04 23:40:05,570 [ scc.git] DEBUG 70b01ed Merge pull request #24 from jburel/build 2026-10-04 23:40:05,571 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-04 23:40:05,699 [ scc.config] DEBUG Found remote.origin.url 2026-10-04 23:40:05,897 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-weberror HTTP/1.1" 301 197 Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 2026-10-04 23:40:05,897 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 2026-10-04 23:40:06,192 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/38373425 HTTP/1.1" 200 None 2026-10-04 23:40:06,685 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-10-04 23:40:07,147 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-10-04 23:40:08,597 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-10-04 23:40:09,055 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-10-04 23:40:09,057 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-04 23:40:09,182 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:40:09,182 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest 2026-10-04 23:40:09,183 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-10-04 23:40:09,198 [ scc.git] DEBUG Check current status 2026-10-04 23:40:09,198 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-04 23:40:09,221 [ scc.git] DEBUG 5bfef29 Merge pull request #36 from jburel/build 2026-10-04 23:40:09,222 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-04 23:40:09,356 [ scc.config] DEBUG Found remote.origin.url 2026-10-04 23:40:09,579 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-webtest HTTP/1.1" 301 197 Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 2026-10-04 23:40:09,580 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 2026-10-04 23:40:09,876 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/25970383 HTTP/1.1" 200 None 2026-10-04 23:40:10,420 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-10-04 23:40:10,894 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-10-04 23:40:11,561 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-10-04 23:40:12,029 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-10-04 23:40:12,030 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-04 23:40:12,151 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:40:12,151 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway 2026-10-04 23:40:12,152 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-10-04 23:40:12,168 [ scc.git] DEBUG Check current status 2026-10-04 23:40:12,168 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-04 23:40:12,192 [ scc.git] DEBUG 7b5d64d Merge pull request #106 from dominikl/add_examples_2 2026-10-04 23:40:12,193 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-04 23:40:12,319 [ scc.config] DEBUG Found remote.origin.url 2026-10-04 23:40:12,598 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway HTTP/1.1" 200 None 2026-10-04 23:40:13,076 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-10-04 23:40:13,525 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-10-04 23:40:13,975 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-10-04 23:40:14,426 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-10-04 23:40:14,427 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-04 23:40:14,558 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:40:14,558 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts 2026-10-04 23:40:14,559 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-10-04 23:40:14,575 [ scc.git] DEBUG Check current status 2026-10-04 23:40:14,575 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-04 23:40:14,605 [ scc.git] DEBUG 5b4d768 Bump version: 5.10.0 → 5.10.1.dev0 2026-10-04 23:40:14,606 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-04 23:40:14,755 [ scc.config] DEBUG Found remote.origin.url 2026-10-04 23:40:14,755 [ scc.git] DEBUG Repository configuration: base-branch: develop 2026-10-04 23:40:14,975 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/scripts HTTP/1.1" 301 196 Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2026-10-04 23:40:14,976 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2026-10-04 23:40:15,340 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/4865545 HTTP/1.1" 200 None 2026-10-04 23:40:15,828 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-10-04 23:40:16,297 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-10-04 23:40:16,745 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-10-04 23:40:17,204 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-10-04 23:40:17,205 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-04 23:40:17,347 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:40:17,347 [ scc.git] DEBUG Resetting... 2026-10-04 23:40:17,347 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2026-10-04 23:40:17,735 [ scc.git] DEBUG HEAD is now at b4a53e4 merge master -Dorg -Snone 2026-10-04 23:40:17,737 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2026-10-04 23:40:18,329 [ scc.git] DEBUG Submodule path 'figure': checked out '393587512d75ac33d3e750a46847ab074bfb435f' 2026-10-04 23:40:18,704 [ scc.git] DEBUG Submodule path 'omero-cli-render': checked out 'ce6e13cfea3157cab0d00fde40f6cc8158946264' 2026-10-04 23:40:19,221 [ scc.git] DEBUG Submodule path 'omero-cli-zarr': checked out '11d35873542022d9638ede115d0dfab4652f8e62' 2026-10-04 23:40:20,555 [ scc.git] DEBUG Submodule path 'omero-figure': checked out '9cc36cde05bde4def7b62b07c2e9ae5f66712e96' 2026-10-04 23:40:21,844 [ scc.git] DEBUG Submodule path 'omero-iviewer': checked out '7a798ceeb3926d049d73788555fb63269a071052' 2026-10-04 23:40:22,244 [ scc.git] DEBUG Submodule path 'omero-metadata': checked out '3cd120cf6f10f71421a4db91fa87baba865c7997' 2026-10-04 23:40:22,675 [ scc.git] DEBUG Submodule path 'omero-rois': checked out 'bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9' 2026-10-04 23:40:22,998 [ scc.git] DEBUG Submodule path 'omero-test-infra': checked out 'cda3ec65052d6933052c8683d080677c6c33dc73' 2026-10-04 23:40:23,365 [ scc.git] DEBUG Submodule path 'omero-virtual-microscope': checked out 'deab81790f403bef598915b89b5300258b44a743' 2026-10-04 23:40:23,621 [ scc.git] DEBUG Submodule path 'omero-web-zarr': checked out '8f3c31388de8a7c44f18a6f0e20ea41d35fae041' 2026-10-04 23:40:24,211 [ scc.git] DEBUG Submodule path 'scripts': checked out '4b4c755af4ccf8a5e709548d1f8415fab48a4867' 2026-10-04 23:40:24,235 [ scc.git] DEBUG Check current status 2026-10-04 23:40:24,236 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-04 23:40:24,260 [ scc.git] DEBUG b4a53e4 merge master -Dorg -Snone 2026-10-04 23:40:24,261 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-04 23:40:24,501 [ scc.git] DEBUG 393587512d75ac33d3e750a46847ab074bfb435f figure (heads/master) 2026-10-04 23:40:24,603 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master) 2026-10-04 23:40:24,645 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2026-10-04 23:40:24,679 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c) 2026-10-04 23:40:24,721 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587) 2026-10-04 23:40:24,780 [ scc.git] DEBUG 9cc36cde05bde4def7b62b07c2e9ae5f66712e96 omero-figure (v7.2.1-3-g9cc36cde) 2026-10-04 23:40:24,815 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2026-10-04 23:40:24,851 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2026-10-04 23:40:24,924 [ scc.git] DEBUG 7a798ceeb3926d049d73788555fb63269a071052 omero-iviewer (v0.16.0-14-g7a798cee) 2026-10-04 23:40:24,957 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2026-10-04 23:40:24,996 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c) 2026-10-04 23:40:25,034 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2026-10-04 23:40:25,069 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2026-10-04 23:40:25,105 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2026-10-04 23:40:25,144 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2026-10-04 23:40:25,187 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6) 2026-10-04 23:40:25,226 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2026-10-04 23:40:25,265 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2026-10-04 23:40:25,298 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313) 2026-10-04 23:40:25,331 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2026-10-04 23:40:25,365 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2026-10-04 23:40:25,397 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2026-10-04 23:40:25,422 [ scc.git] DEBUG 4b4c755af4ccf8a5e709548d1f8415fab48a4867 scripts (v5.9.0-1-g4b4c755) 2026-10-04 23:40:25,423 [ scc.merge] INFO Merging Pull Request(s) based on master 2026-10-04 23:40:25,423 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2026-10-04 23:40:25,423 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2026-10-04 23:40:25,423 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2026-10-04 23:40:25,423 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2026-10-04 23:40:25,423 [ scc.merge] INFO Excluding Pull Request(s) without successful status 2026-10-04 23:40:25,423 [ scc.repo] DEBUG ## PRs found: 2026-10-04 23:40:25,695 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/pulls HTTP/1.1" 200 None 2026-10-04 23:40:26,199 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/433 HTTP/1.1" 200 None 2026-10-04 23:40:26,199 [ scc.repo] DEBUG # ... Include label: dependencies 2026-10-04 23:40:26,961 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74?page=1 HTTP/1.1" 200 None 2026-10-04 23:40:27,474 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-04 23:40:27,965 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74?page=1 HTTP/1.1" 200 None 2026-10-04 23:40:28,418 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/6fd5dc72efc90d7f749b332dba3f903414852d74?per_page=1 HTTP/1.1" 200 2 2026-10-04 23:40:28,419 [ scc.repo] DEBUG - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2026-10-04 23:40:28,988 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/432 HTTP/1.1" 200 None 2026-10-04 23:40:28,989 [ scc.repo] DEBUG # ... Include label: dependencies 2026-10-04 23:40:29,597 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51?page=1 HTTP/1.1" 200 None 2026-10-04 23:40:30,066 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-04 23:40:30,587 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51?page=1 HTTP/1.1" 200 None 2026-10-04 23:40:31,034 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/25bf90a85a7e0945e652f9d78050c8c4860acb51?per_page=1 HTTP/1.1" 200 2 2026-10-04 23:40:31,035 [ scc.repo] DEBUG - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2026-10-04 23:40:31,537 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/429 HTTP/1.1" 200 None 2026-10-04 23:40:31,538 [ scc.repo] DEBUG # ... Include label: dependencies 2026-10-04 23:40:32,187 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2?page=1 HTTP/1.1" 200 None 2026-10-04 23:40:32,699 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-04 23:40:33,176 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2?page=1 HTTP/1.1" 200 None 2026-10-04 23:40:33,628 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/3062fb487d55aef3602ecee795b63ccb73d1f8e2?per_page=1 HTTP/1.1" 200 2 2026-10-04 23:40:33,629 [ scc.repo] DEBUG - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2026-10-04 23:40:33,629 [ scc.repo] DEBUG ## Branches found: 2026-10-04 23:40:33,629 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:40:33,629 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:40:33,644 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-10-04 23:40:33,664 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-10-04 23:40:33,664 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-10-04 23:40:33,697 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-10-04 23:40:33,766 [ scc.git] DEBUG Already up to date. 2026-10-04 23:40:33,766 [ scc.git] DEBUG Calling 'git fetch origin pull/429/head' 2026-10-04 23:40:34,217 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-10-04 23:40:34,217 [ scc.git] DEBUG * branch refs/pull/429/head -> FETCH_HEAD 2026-10-04 23:40:34,257 [ scc.git] DEBUG Calling 'git fetch origin pull/432/head' 2026-10-04 23:40:34,680 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-10-04 23:40:34,680 [ scc.git] DEBUG * branch refs/pull/432/head -> FETCH_HEAD 2026-10-04 23:40:34,710 [ scc.git] DEBUG Calling 'git fetch origin pull/433/head' 2026-10-04 23:40:35,125 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-10-04 23:40:35,125 [ scc.git] DEBUG * branch refs/pull/433/head -> FETCH_HEAD 2026-10-04 23:40:35,158 [ scc.git] DEBUG ## Unique users: [] 2026-10-04 23:40:35,158 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:40:35,158 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:40:35,170 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2026-10-04 23:40:35,205 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:40:35,219 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 429 (Bump scripts from `312afbe` to `4b4c755`) 3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2026-10-04 23:40:35,286 [ scc.git] DEBUG Already up to date. 2026-10-04 23:40:35,460 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:40:35,461 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25bf90a85a7e0945e652f9d78050c8c4860acb51' 2026-10-04 23:40:35,499 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:40:35,512 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 432 (Bump omero-figure from `fb316a7` to `9cc36cd`) 25bf90a85a7e0945e652f9d78050c8c4860acb51' 2026-10-04 23:40:35,573 [ scc.git] DEBUG Already up to date. 2026-10-04 23:40:35,895 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:40:35,896 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6fd5dc72efc90d7f749b332dba3f903414852d74' 2026-10-04 23:40:35,928 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:40:35,940 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 433 (Bump omero-iviewer from `b4102d4` to `7a798ce`) 6fd5dc72efc90d7f749b332dba3f903414852d74' 2026-10-04 23:40:36,001 [ scc.git] DEBUG Already up to date. 2026-10-04 23:40:36,332 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:40:36,332 [ scc.git] DEBUG Calling 'git submodule update' 2026-10-04 23:40:37,254 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:40:37,254 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:40:37,269 [ scc.repo] DEBUG ## PRs found: 2026-10-04 23:40:37,597 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/pulls HTTP/1.1" 200 None 2026-10-04 23:40:38,072 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/12 HTTP/1.1" 200 None 2026-10-04 23:40:38,583 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/12/comments HTTP/1.1" 200 None 2026-10-04 23:40:39,084 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/9 HTTP/1.1" 200 None 2026-10-04 23:40:39,578 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/9/comments HTTP/1.1" 200 None 2026-10-04 23:40:40,074 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/5 HTTP/1.1" 200 None 2026-10-04 23:40:40,579 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/5/comments HTTP/1.1" 200 None 2026-10-04 23:40:41,158 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/fbc156c89d5749c985216f2fddcbfb9eb34a4d5a?page=1 HTTP/1.1" 200 None 2026-10-04 23:40:41,633 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/fbc156c89d5749c985216f2fddcbfb9eb34a4d5a/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-04 23:40:42,104 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/fbc156c89d5749c985216f2fddcbfb9eb34a4d5a?page=1 HTTP/1.1" 200 None 2026-10-04 23:40:42,563 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/statuses/fbc156c89d5749c985216f2fddcbfb9eb34a4d5a?per_page=1 HTTP/1.1" 200 None 2026-10-04 23:40:43,049 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/fbc156c89d5749c985216f2fddcbfb9eb34a4d5a?page=1 HTTP/1.1" 200 None 2026-10-04 23:40:43,549 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/fbc156c89d5749c985216f2fddcbfb9eb34a4d5a/status HTTP/1.1" 200 None 2026-10-04 23:40:43,550 [ scc.repo] DEBUG - PR 5 will-moore 'Add sample_figures/ngff_images_figure.json' 2026-10-04 23:40:43,551 [ scc.repo] DEBUG ## Branches found: 2026-10-04 23:40:43,551 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/figure 2026-10-04 23:40:43,551 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:40:43,551 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:40:43,568 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-10-04 23:40:43,590 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-10-04 23:40:43,590 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-10-04 23:40:43,679 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-10-04 23:40:44,278 [ scc.git] DEBUG Updating 3935875..e92b4e8 2026-10-04 23:40:44,845 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/pulls/20 HTTP/1.1" 200 None 2026-10-04 23:40:45,721 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/pulls/19 HTTP/1.1" 200 None 2026-10-04 23:40:46,504 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/pulls/14 HTTP/1.1" 200 None 2026-10-04 23:40:47,295 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/pulls/17 HTTP/1.1" 200 None 2026-10-04 23:40:48,069 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/pulls/15 HTTP/1.1" 200 None 2026-10-04 23:40:48,070 [ scc.git] DEBUG Calling 'git fetch origin pull/5/head' 2026-10-04 23:40:48,832 [ scc.git] DEBUG From https://github.com/ome/figure 2026-10-04 23:40:48,832 [ scc.git] DEBUG * branch refs/pull/5/head -> FETCH_HEAD 2026-10-04 23:40:48,858 [ scc.git] DEBUG ## Unique users: [] 2026-10-04 23:40:48,858 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:40:48,858 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:40:48,871 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...fbc156c89d5749c985216f2fddcbfb9eb34a4d5a' 2026-10-04 23:40:48,950 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:40:48,962 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 5 (Add sample_figures/ngff_images_figure.json) fbc156c89d5749c985216f2fddcbfb9eb34a4d5a' 2026-10-04 23:40:49,430 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-04 23:40:49,515 [ scc.git] DEBUG sample_figures/IDR_JAX_images.json | 4304 ++++++++++++++++++++++++++++++++ 2026-10-04 23:40:49,515 [ scc.git] DEBUG sample_figures/ngff_images_figure.json | 2086 ++++++++++++++++ 2026-10-04 23:40:49,515 [ scc.git] DEBUG src/js/models/zarr_utils.js | 11 +- 2026-10-04 23:40:49,515 [ scc.git] DEBUG src/js/views/open_local_file_modal.js | 4 +- 2026-10-04 23:40:49,515 [ scc.git] DEBUG 4 files changed, 6400 insertions(+), 5 deletions(-) 2026-10-04 23:40:49,515 [ scc.git] DEBUG create mode 100644 sample_figures/IDR_JAX_images.json 2026-10-04 23:40:49,515 [ scc.git] DEBUG create mode 100644 sample_figures/ngff_images_figure.json 2026-10-04 23:40:49,698 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:40:49,699 [ scc.git] DEBUG Calling 'git submodule update' 2026-10-04 23:40:49,818 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:40:49,818 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:40:49,831 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-04 23:40:49,941 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-10-04 23:40:50,038 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb10fff8710> has no local changes 2026-10-04 23:40:50,039 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/figure Excluded PRs: - PR 12 will-moore 'Browser based export' (stage: draft) - PR 9 will-moore 'Save omezarr collection' (stage: draft) Updating 3935875..e92b4e8 Previously merged: - PR 20 will-moore 'Hide export dropdown unless omero' - PR 19 Rdornier 'Fix rectangle crop' - PR 14 will-moore 'App served by omero env' - PR 17 Rdornier 'Do not crop rotated panel at export' - PR 15 will-moore 'Replace navbar 'OMERO' with 'figure' and OME logo' Merged PRs: - PR 5 will-moore 'Add sample_figures/ngff_images_figure.json' Generated by OMERO-plugins-push#100 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/100/)' 2026-10-04 23:40:50,206 [ scc.git] DEBUG [detached HEAD 970e7c4] merge master -Dorg -Ssuccess-only 2026-10-04 23:40:50,208 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:40:50,208 [ scc.repo] DEBUG ## PRs found: 2026-10-04 23:40:50,412 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/minimal-omero-client/pulls HTTP/1.1" 200 2 2026-10-04 23:40:50,412 [ scc.repo] DEBUG ## Branches found: 2026-10-04 23:40:50,412 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client 2026-10-04 23:40:50,412 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:40:50,412 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:40:50,429 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-10-04 23:40:50,449 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-10-04 23:40:50,450 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-10-04 23:40:50,471 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-10-04 23:40:50,527 [ scc.git] DEBUG Already up to date. 2026-10-04 23:40:50,527 [ scc.git] DEBUG ## Unique users: [] 2026-10-04 23:40:50,527 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:40:50,527 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:40:50,545 [ scc.git] DEBUG Calling 'git submodule update' 2026-10-04 23:40:50,678 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:40:50,678 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:40:50,695 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-04 23:40:50,811 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-10-04 23:40:50,874 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb10fb7b110> has no local changes 2026-10-04 23:40:50,874 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/minimal-omero-client Already up to date. Generated by OMERO-plugins-push#100 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/100/)' 2026-10-04 23:40:51,010 [ scc.git] DEBUG [detached HEAD a5c9d15] merge master -Dorg -Ssuccess-only 2026-10-04 23:40:51,012 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:40:51,013 [ scc.repo] DEBUG ## PRs found: 2026-10-04 23:40:51,315 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/pulls HTTP/1.1" 200 None 2026-10-04 23:40:51,819 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/29 HTTP/1.1" 200 None 2026-10-04 23:40:51,820 [ scc.repo] DEBUG # ... Include label: dependencies 2026-10-04 23:40:52,384 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4?page=1 HTTP/1.1" 200 None 2026-10-04 23:40:52,993 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-04 23:40:53,561 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-10-04 23:40:54,039 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4?page=1 HTTP/1.1" 200 None 2026-10-04 23:40:54,690 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/statuses/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4?per_page=1 HTTP/1.1" 200 2 2026-10-04 23:40:54,691 [ scc.repo] DEBUG - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-10-04 23:40:55,186 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/18 HTTP/1.1" 200 None 2026-10-04 23:40:55,699 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/18/comments HTTP/1.1" 200 None 2026-10-04 23:40:55,700 [ scc.repo] DEBUG ## Branches found: 2026-10-04 23:40:55,700 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate 2026-10-04 23:40:55,700 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:40:55,700 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:40:55,718 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-10-04 23:40:55,738 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-10-04 23:40:55,738 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-10-04 23:40:55,763 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-10-04 23:40:55,828 [ scc.git] DEBUG Already up to date. 2026-10-04 23:40:55,828 [ scc.git] DEBUG Calling 'git fetch origin pull/29/head' 2026-10-04 23:40:56,255 [ scc.git] DEBUG From https://github.com/ome/omero-cli-duplicate 2026-10-04 23:40:56,255 [ scc.git] DEBUG * branch refs/pull/29/head -> FETCH_HEAD 2026-10-04 23:40:56,284 [ scc.git] DEBUG ## Unique users: [] 2026-10-04 23:40:56,284 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:40:56,285 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:40:56,307 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4' 2026-10-04 23:40:56,334 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:40:56,350 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 29 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4' 2026-10-04 23:40:56,550 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-04 23:40:56,618 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-10-04 23:40:56,618 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-10-04 23:40:56,803 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:40:56,803 [ scc.git] DEBUG Calling 'git submodule update' 2026-10-04 23:40:56,919 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:40:56,920 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:40:56,934 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-04 23:40:57,037 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-10-04 23:40:57,087 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb10fb82ad0> has no local changes 2026-10-04 23:40:57,088 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-cli-duplicate Excluded PRs: - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment) Already up to date. Merged PRs: - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#100 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/100/)' 2026-10-04 23:40:57,232 [ scc.git] DEBUG [detached HEAD 958b60d] merge master -Dorg -Ssuccess-only 2026-10-04 23:40:57,235 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:40:57,235 [ scc.repo] DEBUG ## PRs found: 2026-10-04 23:40:57,543 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls HTTP/1.1" 200 None 2026-10-04 23:40:58,131 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/59 HTTP/1.1" 200 None 2026-10-04 23:40:58,620 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/59/comments HTTP/1.1" 200 None 2026-10-04 23:40:59,186 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99?page=1 HTTP/1.1" 200 None 2026-10-04 23:40:59,774 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-04 23:41:00,307 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-10-04 23:41:00,781 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99?page=1 HTTP/1.1" 200 None 2026-10-04 23:41:01,238 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/statuses/38c5fff61b004cd2efee36b3f5c034d2b8f01c99?per_page=1 HTTP/1.1" 200 2 2026-10-04 23:41:01,238 [ scc.repo] DEBUG - PR 59 will-moore 'Apply settings to Plate' 2026-10-04 23:41:01,767 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/52 HTTP/1.1" 200 None 2026-10-04 23:41:02,259 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/52/comments HTTP/1.1" 200 None 2026-10-04 23:41:02,260 [ scc.repo] DEBUG ## Branches found: 2026-10-04 23:41:02,260 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render 2026-10-04 23:41:02,261 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:41:02,261 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:41:02,282 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-10-04 23:41:02,297 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-10-04 23:41:02,297 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-10-04 23:41:02,318 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-10-04 23:41:02,462 [ scc.git] DEBUG Updating ce6e13c..68b7303 2026-10-04 23:41:03,107 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/74 HTTP/1.1" 200 None 2026-10-04 23:41:04,058 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/75 HTTP/1.1" 200 None 2026-10-04 23:41:04,856 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/71 HTTP/1.1" 200 None 2026-10-04 23:41:05,690 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/69 HTTP/1.1" 200 None 2026-10-04 23:41:05,691 [ scc.git] DEBUG Calling 'git fetch origin pull/59/head' 2026-10-04 23:41:06,394 [ scc.git] DEBUG From https://github.com/ome/omero-cli-render 2026-10-04 23:41:06,394 [ scc.git] DEBUG * branch refs/pull/59/head -> FETCH_HEAD 2026-10-04 23:41:06,419 [ scc.git] DEBUG ## Unique users: [] 2026-10-04 23:41:06,419 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:41:06,419 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:41:06,434 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38c5fff61b004cd2efee36b3f5c034d2b8f01c99' 2026-10-04 23:41:06,479 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:41:06,494 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 59 (Apply settings to Plate) 38c5fff61b004cd2efee36b3f5c034d2b8f01c99' 2026-10-04 23:41:06,659 [ scc.git] DEBUG Auto-merging src/omero_cli_render.py 2026-10-04 23:41:06,724 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-04 23:41:06,782 [ scc.git] DEBUG src/omero_cli_render.py | 170 ++++++++++++++++++++++++++++-------------------- 2026-10-04 23:41:06,782 [ scc.git] DEBUG 1 file changed, 101 insertions(+), 69 deletions(-) 2026-10-04 23:41:06,961 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:41:06,962 [ scc.git] DEBUG Calling 'git submodule update' 2026-10-04 23:41:07,094 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:41:07,094 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:41:07,109 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-04 23:41:07,239 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-10-04 23:41:07,293 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb10fbc1250> has no local changes 2026-10-04 23:41:07,293 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-cli-render Excluded PRs: - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft) Updating ce6e13c..68b7303 Previously merged: - PR 74 jburel 'Replace manual changelog by automated GH release step' - PR 75 jburel 'Sort the new channels to ensure settings are set' - PR 71 dominikl 'Escape slash character in image names' - PR 69 dominikl 'Fix help text for impo/export commands' Merged PRs: - PR 59 will-moore 'Apply settings to Plate' Generated by OMERO-plugins-push#100 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/100/)' 2026-10-04 23:41:07,451 [ scc.git] DEBUG [detached HEAD 0adee74] merge master -Dorg -Ssuccess-only 2026-10-04 23:41:07,453 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:41:07,453 [ scc.repo] DEBUG ## PRs found: 2026-10-04 23:41:07,810 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls HTTP/1.1" 200 None 2026-10-04 23:41:08,301 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/178 HTTP/1.1" 200 None 2026-10-04 23:41:08,797 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/178/comments HTTP/1.1" 200 None 2026-10-04 23:41:09,536 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae?page=1 HTTP/1.1" 200 None 2026-10-04 23:41:10,098 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-04 23:41:10,682 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-10-04 23:41:11,177 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae?page=1 HTTP/1.1" 200 None 2026-10-04 23:41:11,669 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/f99a6a6869bf6259376adaea157f24955c9aa3ae?per_page=1 HTTP/1.1" 200 None 2026-10-04 23:41:12,159 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae?page=1 HTTP/1.1" 200 None 2026-10-04 23:41:12,658 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae/status HTTP/1.1" 200 None 2026-10-04 23:41:12,659 [ scc.repo] DEBUG - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' 2026-10-04 23:41:13,154 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/174 HTTP/1.1" 200 None 2026-10-04 23:41:13,644 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/174/comments HTTP/1.1" 200 None 2026-10-04 23:41:14,230 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c?page=1 HTTP/1.1" 200 None 2026-10-04 23:41:14,805 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-04 23:41:15,520 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-10-04 23:41:15,997 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c?page=1 HTTP/1.1" 200 None 2026-10-04 23:41:16,460 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/e795ce506487fad5c1184c909aaa1dab9a30401c?per_page=1 HTTP/1.1" 200 None 2026-10-04 23:41:16,955 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c?page=1 HTTP/1.1" 200 None 2026-10-04 23:41:17,448 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c/status HTTP/1.1" 200 None 2026-10-04 23:41:17,448 [ scc.repo] DEBUG - PR 174 will-moore 'Skip wells' 2026-10-04 23:41:17,961 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/166 HTTP/1.1" 200 None 2026-10-04 23:41:18,486 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/162 HTTP/1.1" 200 None 2026-10-04 23:41:18,974 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/123 HTTP/1.1" 200 None 2026-10-04 23:41:19,494 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/123/comments HTTP/1.1" 200 None 2026-10-04 23:41:19,988 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/256245946/issues/123/comments?page=2 HTTP/1.1" 200 None 2026-10-04 23:41:19,990 [ scc.repo] DEBUG ## Branches found: 2026-10-04 23:41:19,990 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr 2026-10-04 23:41:19,991 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:41:19,991 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:41:20,012 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-10-04 23:41:20,031 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-10-04 23:41:20,031 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-10-04 23:41:20,320 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-10-04 23:41:20,831 [ scc.git] DEBUG Updating 11d3587..d5f88d8 2026-10-04 23:41:21,516 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/193 HTTP/1.1" 200 None 2026-10-04 23:41:22,303 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/182 HTTP/1.1" 200 None 2026-10-04 23:41:23,103 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/194 HTTP/1.1" 200 None 2026-10-04 23:41:23,955 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/197 HTTP/1.1" 200 None 2026-10-04 23:41:24,786 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/196 HTTP/1.1" 200 None 2026-10-04 23:41:25,615 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/172 HTTP/1.1" 200 None 2026-10-04 23:41:26,372 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/192 HTTP/1.1" 200 None 2026-10-04 23:41:27,192 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/186 HTTP/1.1" 200 None 2026-10-04 23:41:27,982 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/187 HTTP/1.1" 200 None 2026-10-04 23:41:28,809 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/180 HTTP/1.1" 200 None 2026-10-04 23:41:29,639 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/179 HTTP/1.1" 200 None 2026-10-04 23:41:30,427 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/177 HTTP/1.1" 200 None 2026-10-04 23:41:31,212 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/175 HTTP/1.1" 200 None 2026-10-04 23:41:31,983 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/147 HTTP/1.1" 200 None 2026-10-04 23:41:32,802 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/173 HTTP/1.1" 200 None 2026-10-04 23:41:33,624 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/171 HTTP/1.1" 200 None 2026-10-04 23:41:34,567 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/168 HTTP/1.1" 200 None 2026-10-04 23:41:34,665 [ scc.git] DEBUG Calling 'git fetch origin pull/174/head' 2026-10-04 23:41:35,440 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr 2026-10-04 23:41:35,440 [ scc.git] DEBUG * branch refs/pull/174/head -> FETCH_HEAD 2026-10-04 23:41:35,470 [ scc.git] DEBUG Calling 'git fetch origin pull/178/head' 2026-10-04 23:41:36,030 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr 2026-10-04 23:41:36,030 [ scc.git] DEBUG * branch refs/pull/178/head -> FETCH_HEAD 2026-10-04 23:41:36,056 [ scc.git] DEBUG ## Unique users: [] 2026-10-04 23:41:36,056 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:41:36,056 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:41:36,071 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...e795ce506487fad5c1184c909aaa1dab9a30401c' 2026-10-04 23:41:36,172 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:41:36,188 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 174 (Skip wells) e795ce506487fad5c1184c909aaa1dab9a30401c' 2026-10-04 23:41:36,671 [ scc.git] DEBUG Auto-merging README.rst 2026-10-04 23:41:36,671 [ scc.git] DEBUG Auto-merging src/omero_zarr/cli.py 2026-10-04 23:41:36,671 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/cli.py 2026-10-04 23:41:36,671 [ scc.git] DEBUG Auto-merging src/omero_zarr/masks.py 2026-10-04 23:41:36,671 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/masks.py 2026-10-04 23:41:36,671 [ scc.git] DEBUG Auto-merging src/omero_zarr/raw_pixels.py 2026-10-04 23:41:36,671 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/raw_pixels.py 2026-10-04 23:41:36,671 [ scc.git] DEBUG Auto-merging src/omero_zarr/util.py 2026-10-04 23:41:36,671 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/util.py 2026-10-04 23:41:36,671 [ scc.git] DEBUG Auto-merging test/integration/clitest/test_export.py 2026-10-04 23:41:36,671 [ scc.git] DEBUG CONFLICT (content): Merge conflict in test/integration/clitest/test_export.py 2026-10-04 23:41:36,696 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-10-04 23:41:36,698 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-10-04 23:41:36,763 [ scc.git] DEBUG Calling 'git reset --hard d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82' 2026-10-04 23:41:36,994 [ scc.git] DEBUG HEAD is now at d5f88d8 Bump version: 0.9.0 → 0.9.1.dev0 2026-10-04 23:41:37,170 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:41:37,171 [ scc.git] DEBUG Calling 'git merge-base d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82 e795ce506487fad5c1184c909aaa1dab9a30401c' 2026-10-04 23:41:37,260 [ scc.git] DEBUG Calling 'git diff --name-only 37ea7000309b4f8b87c5122c138fb59b17ecf86b..d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82' 2026-10-04 23:41:37,296 [ scc.git] INFO - PR 174 will-moore 'Skip wells' Conflicting PR. Removed from build [OMERO-plugins-push#100](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/100/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/100/consoleText) for more details. Possible conflicts: - Upstream changes - src/omero_zarr/util.py - src/omero_zarr/cli.py - test/integration/clitest/test_export.py - src/omero_zarr/masks.py - src/omero_zarr/raw_pixels.py --conflicts 2026-10-04 23:41:37,308 [ scc.config] DEBUG Found github.token 2026-10-04 23:41:37,308 [ scc.git] DEBUG Not adding comment to issue #174, already --conflicts. 2026-10-04 23:41:37,308 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...f99a6a6869bf6259376adaea157f24955c9aa3ae' 2026-10-04 23:41:37,389 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:41:37,402 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 178 (Fix export of masks with multi-theC as multi-channel labels) f99a6a6869bf6259376adaea157f24955c9aa3ae' 2026-10-04 23:41:37,698 [ scc.git] DEBUG Auto-merging src/omero_zarr/masks.py 2026-10-04 23:41:37,699 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/masks.py 2026-10-04 23:41:37,699 [ scc.git] DEBUG Auto-merging test/integration/clitest/test_export.py 2026-10-04 23:41:37,699 [ scc.git] DEBUG CONFLICT (content): Merge conflict in test/integration/clitest/test_export.py 2026-10-04 23:41:37,719 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-10-04 23:41:37,721 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-10-04 23:41:37,753 [ scc.git] DEBUG Calling 'git reset --hard d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82' 2026-10-04 23:41:37,920 [ scc.git] DEBUG HEAD is now at d5f88d8 Bump version: 0.9.0 → 0.9.1.dev0 2026-10-04 23:41:38,113 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:41:38,114 [ scc.git] DEBUG Calling 'git merge-base d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82 f99a6a6869bf6259376adaea157f24955c9aa3ae' 2026-10-04 23:41:38,192 [ scc.git] DEBUG Calling 'git diff --name-only 9530c10ba9823fcba6b39139987bf4bcd4a60179..d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82' 2026-10-04 23:41:38,226 [ scc.git] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' Conflicting PR. Removed from build [OMERO-plugins-push#100](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/100/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/100/consoleText) for more details. Possible conflicts: - PR #174 will-moore 'Skip wells' - test/integration/clitest/test_export.py - src/omero_zarr/masks.py - Upstream changes - test/integration/clitest/test_export.py - src/omero_zarr/masks.py --conflicts 2026-10-04 23:41:38,237 [ scc.config] DEBUG Found github.token 2026-10-04 23:41:38,237 [ scc.git] DEBUG Not adding comment to issue #178, already --conflicts. 2026-10-04 23:41:38,237 [ scc.git] DEBUG Calling 'git submodule update' 2026-10-04 23:41:38,361 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:41:38,361 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:41:38,376 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-04 23:41:38,494 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-10-04 23:41:38,568 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb10fbc0210> has no local changes 2026-10-04 23:41:38,568 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-cli-zarr Excluded PRs: - PR 166 will-moore 'Downsample scale option' (stage: draft) - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment) Updating 11d3587..d5f88d8 Previously merged: - PR 193 dominikl 'Only parse import uris if stated' - PR 182 will-moore 'Revert "Remove support for Plate import"' - PR 194 will-moore 'Update uk1s3.embassy links to livingobjects' - PR 197 pwalczysko 'Fix pragma' - PR 196 will-moore 'Storage options only if needed' - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' - PR 192 jburel 'Set Omero pixel size' - PR 186 jburel 'Create release from tag' - PR 187 dominikl 'Fix target-by-name option' - PR 180 will-moore 'Import command' - PR 179 will-moore 'Changelog 0.6.0' - PR 177 jburel 'Replace fromstring by frombuffer' - PR 175 will-moore 'Pin ome-zarr-py <0.12.0' - PR 147 will-moore 'Name option' - PR 173 will-moore 'Add test_export_plate_polygons()' - PR 171 will-moore 'Initial addition of integration tests' - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Conflicting PRs (not included): - PR 174 will-moore 'Skip wells' - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' Generated by OMERO-plugins-push#100 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/100/)' 2026-10-04 23:41:38,712 [ scc.git] DEBUG [detached HEAD af09ad3] merge master -Dorg -Ssuccess-only 2026-10-04 23:41:38,714 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:41:38,714 [ scc.repo] DEBUG ## PRs found: 2026-10-04 23:41:39,022 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls HTTP/1.1" 200 None 2026-10-04 23:41:39,510 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/710 HTTP/1.1" 200 None 2026-10-04 23:41:39,511 [ scc.repo] DEBUG # ... Include label: dependencies 2026-10-04 23:41:40,170 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/9ffbb2959a93d788f12be0c4452f030315926ab2?page=1 HTTP/1.1" 200 None 2026-10-04 23:41:40,723 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/9ffbb2959a93d788f12be0c4452f030315926ab2/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-04 23:41:41,323 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/9ffbb2959a93d788f12be0c4452f030315926ab2/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-10-04 23:41:41,794 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/9ffbb2959a93d788f12be0c4452f030315926ab2?page=1 HTTP/1.1" 200 None 2026-10-04 23:41:42,237 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/9ffbb2959a93d788f12be0c4452f030315926ab2?per_page=1 HTTP/1.1" 200 2 2026-10-04 23:41:42,238 [ scc.repo] DEBUG - PR 710 dependabot[bot] 'Bump dompurify from 3.4.13 to 3.4.16' 2026-10-04 23:41:42,726 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/706 HTTP/1.1" 200 None 2026-10-04 23:41:43,226 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/706/comments HTTP/1.1" 200 None 2026-10-04 23:41:43,788 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/d5fb705652bca5db75b24fb3e9421f3be09e9fa3?page=1 HTTP/1.1" 200 None 2026-10-04 23:41:44,328 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/d5fb705652bca5db75b24fb3e9421f3be09e9fa3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-04 23:41:44,844 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/d5fb705652bca5db75b24fb3e9421f3be09e9fa3/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-10-04 23:41:45,311 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/d5fb705652bca5db75b24fb3e9421f3be09e9fa3?page=1 HTTP/1.1" 200 None 2026-10-04 23:41:45,808 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/d5fb705652bca5db75b24fb3e9421f3be09e9fa3?per_page=1 HTTP/1.1" 200 2 2026-10-04 23:41:45,809 [ scc.repo] DEBUG - PR 706 will-moore 'Figure repo migration' 2026-10-04 23:41:45,809 [ scc.repo] DEBUG ## Branches found: 2026-10-04 23:41:45,809 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure 2026-10-04 23:41:45,810 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:41:45,810 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:41:45,831 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-10-04 23:41:45,862 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-10-04 23:41:45,862 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-10-04 23:41:46,855 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-10-04 23:41:48,323 [ scc.git] DEBUG Updating 9cc36cde..3195c3df 2026-10-04 23:41:48,854 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/704 HTTP/1.1" 200 None 2026-10-04 23:41:49,697 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/703 HTTP/1.1" 200 None 2026-10-04 23:41:50,515 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/700 HTTP/1.1" 200 None 2026-10-04 23:41:51,311 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/692 HTTP/1.1" 200 None 2026-10-04 23:41:52,059 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/701 HTTP/1.1" 200 None 2026-10-04 23:41:52,877 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/698 HTTP/1.1" 200 None 2026-10-04 23:41:53,652 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/697 HTTP/1.1" 200 None 2026-10-04 23:41:54,402 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/695 HTTP/1.1" 200 None 2026-10-04 23:41:55,104 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/693 HTTP/1.1" 200 None 2026-10-04 23:41:55,831 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/691 HTTP/1.1" 200 None 2026-10-04 23:41:56,612 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/686 HTTP/1.1" 200 None 2026-10-04 23:41:57,353 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/690 HTTP/1.1" 200 None 2026-10-04 23:41:58,082 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/681 HTTP/1.1" 200 None 2026-10-04 23:41:58,827 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/688 HTTP/1.1" 200 None 2026-10-04 23:41:59,609 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/685 HTTP/1.1" 200 None 2026-10-04 23:42:00,469 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/683 HTTP/1.1" 200 None 2026-10-04 23:42:01,325 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/680 HTTP/1.1" 200 None 2026-10-04 23:42:02,199 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/684 HTTP/1.1" 200 None 2026-10-04 23:42:03,025 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/682 HTTP/1.1" 200 None 2026-10-04 23:42:03,900 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/679 HTTP/1.1" 200 None 2026-10-04 23:42:04,784 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/677 HTTP/1.1" 200 None 2026-10-04 23:42:05,681 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/666 HTTP/1.1" 200 None 2026-10-04 23:42:06,539 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/676 HTTP/1.1" 200 None 2026-10-04 23:42:07,368 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/669 HTTP/1.1" 200 None 2026-10-04 23:42:08,197 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/662 HTTP/1.1" 200 None 2026-10-04 23:42:09,138 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/663 HTTP/1.1" 200 None 2026-10-04 23:42:10,112 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/674 HTTP/1.1" 200 None 2026-10-04 23:42:10,948 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/675 HTTP/1.1" 200 None 2026-10-04 23:42:11,647 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/671 HTTP/1.1" 200 None 2026-10-04 23:42:12,547 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/672 HTTP/1.1" 200 None 2026-10-04 23:42:13,441 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/667 HTTP/1.1" 200 None 2026-10-04 23:42:14,322 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/665 HTTP/1.1" 200 None 2026-10-04 23:42:15,174 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/656 HTTP/1.1" 200 None 2026-10-04 23:42:15,944 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/670 HTTP/1.1" 200 None 2026-10-04 23:42:16,878 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/664 HTTP/1.1" 200 None 2026-10-04 23:42:17,666 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/654 HTTP/1.1" 200 None 2026-10-04 23:42:18,588 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/648 HTTP/1.1" 200 None 2026-10-04 23:42:19,379 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/661 HTTP/1.1" 200 None 2026-10-04 23:42:20,183 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/649 HTTP/1.1" 200 None 2026-10-04 23:42:21,016 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/657 HTTP/1.1" 200 None 2026-10-04 23:42:21,812 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/637 HTTP/1.1" 200 None 2026-10-04 23:42:22,855 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/600 HTTP/1.1" 200 None 2026-10-04 23:42:23,741 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/653 HTTP/1.1" 200 None 2026-10-04 23:42:24,498 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/651 HTTP/1.1" 200 None 2026-10-04 23:42:25,290 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/650 HTTP/1.1" 200 None 2026-10-04 23:42:26,119 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/647 HTTP/1.1" 200 None 2026-10-04 23:42:27,033 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/610 HTTP/1.1" 200 None 2026-10-04 23:42:27,754 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/644 HTTP/1.1" 200 None 2026-10-04 23:42:28,546 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/646 HTTP/1.1" 200 None 2026-10-04 23:42:29,327 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/612 HTTP/1.1" 200 None 2026-10-04 23:42:30,262 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/630 HTTP/1.1" 200 None 2026-10-04 23:42:31,082 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/616 HTTP/1.1" 200 None 2026-10-04 23:42:32,024 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/605 HTTP/1.1" 200 None 2026-10-04 23:42:32,870 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/638 HTTP/1.1" 200 None 2026-10-04 23:42:33,601 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/633 HTTP/1.1" 200 None 2026-10-04 23:42:34,335 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/635 HTTP/1.1" 200 None 2026-10-04 23:42:35,102 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/623 HTTP/1.1" 200 None 2026-10-04 23:42:35,888 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/631 HTTP/1.1" 200 None 2026-10-04 23:42:35,890 [ scc.git] DEBUG Calling 'git fetch origin pull/706/head' 2026-10-04 23:42:36,443 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2026-10-04 23:42:36,443 [ scc.git] DEBUG * branch refs/pull/706/head -> FETCH_HEAD 2026-10-04 23:42:36,475 [ scc.git] DEBUG Calling 'git fetch origin pull/710/head' 2026-10-04 23:42:36,969 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2026-10-04 23:42:36,969 [ scc.git] DEBUG * branch refs/pull/710/head -> FETCH_HEAD 2026-10-04 23:42:37,000 [ scc.git] DEBUG ## Unique users: [] 2026-10-04 23:42:37,000 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:42:37,000 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:42:37,015 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d5fb705652bca5db75b24fb3e9421f3be09e9fa3' 2026-10-04 23:42:37,139 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:42:37,154 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 706 (Figure repo migration) d5fb705652bca5db75b24fb3e9421f3be09e9fa3' 2026-10-04 23:42:37,848 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-04 23:42:37,960 [ scc.git] DEBUG .bumpversion.cfg | 4 +- 2026-10-04 23:42:37,961 [ scc.git] DEBUG .github/workflows/omero_plugin.yml | 2 + 2026-10-04 23:42:37,961 [ scc.git] DEBUG .github/workflows/pages.yml | 28 - 2026-10-04 23:42:37,961 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 + 2026-10-04 23:42:37,961 [ scc.git] DEBUG .gitignore | 7 +- 2026-10-04 23:42:37,961 [ scc.git] DEBUG .gitmodules | 3 + 2026-10-04 23:42:37,961 [ scc.git] DEBUG .omeroci/app-srv | 4 +- 2026-10-04 23:42:37,961 [ scc.git] DEBUG README.rst | 76 +- 2026-10-04 23:42:37,961 [ scc.git] DEBUG deploy_build.sh | 21 +- 2026-10-04 23:42:37,961 [ scc.git] DEBUG deploy_ghpages.sh | 1 + 2026-10-04 23:42:37,961 [ scc.git] DEBUG figure | 1 + 2026-10-04 23:42:37,961 [ scc.git] DEBUG omero_figure/scripts/__init__.py | 0 2026-10-04 23:42:37,961 [ scc.git] DEBUG omero_figure/scripts/omero/__init__.py | 0 2026-10-04 23:42:37,961 [ scc.git] DEBUG .../scripts/omero/figure_scripts/Figure_To_Pdf.py | 3562 -------------------- 2026-10-04 23:42:37,961 [ scc.git] DEBUG .../scripts/omero/figure_scripts/__init__.py | 0 2026-10-04 23:42:37,961 [ scc.git] DEBUG 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scc.git] DEBUG src/js/main.js | 189 -- 2026-10-04 23:42:37,961 [ scc.git] DEBUG src/js/models/figure_model.js | 1398 -------- 2026-10-04 23:42:37,961 [ scc.git] DEBUG src/js/models/panel_model.js | 1577 --------- 2026-10-04 23:42:37,962 [ scc.git] DEBUG src/js/models/roi_model.js | 149 - 2026-10-04 23:42:37,962 [ scc.git] DEBUG src/js/models/undo.js | 282 -- 2026-10-04 23:42:37,962 [ scc.git] DEBUG src/js/models/zarr_utils.js | 483 --- 2026-10-04 23:42:37,962 [ scc.git] DEBUG src/js/shapeEditorTest.js | 454 --- 2026-10-04 23:42:37,962 [ scc.git] DEBUG src/js/shape_editor/ellipse.js | 604 ---- 2026-10-04 23:42:37,962 [ scc.git] DEBUG src/js/shape_editor/line.js | 612 ---- 2026-10-04 23:42:37,962 [ scc.git] DEBUG src/js/shape_editor/point.js | 527 --- 2026-10-04 23:42:37,962 [ scc.git] DEBUG src/js/shape_editor/polygon.js | 462 --- 2026-10-04 23:42:37,962 [ scc.git] DEBUG src/js/shape_editor/rect.js | 618 ---- 2026-10-04 23:42:37,962 [ scc.git] DEBUG src/js/shape_editor/shape_manager.js | 992 ------ 2026-10-04 23:42:37,962 [ scc.git] DEBUG src/js/shape_editor/text.js | 564 ---- 2026-10-04 23:42:37,962 [ scc.git] DEBUG src/js/views/backbone.mousetrap.js | 69 - 2026-10-04 23:42:37,962 [ scc.git] DEBUG src/js/views/channel_slider_view.js | 450 --- 2026-10-04 23:42:37,962 [ scc.git] DEBUG src/js/views/chgrp_modal_view.js | 143 - 2026-10-04 23:42:37,962 [ scc.git] DEBUG src/js/views/colorbar_form_view.js | 124 - 2026-10-04 23:42:37,962 [ scc.git] DEBUG src/js/views/colorpicker.js | 143 - 2026-10-04 23:42:37,962 [ scc.git] DEBUG src/js/views/crop_modal_view.js | 660 ---- 2026-10-04 23:42:37,962 [ scc.git] DEBUG src/js/views/figure_view.js | 1125 ------- 2026-10-04 23:42:37,962 [ scc.git] DEBUG src/js/views/files.js | 374 -- 2026-10-04 23:42:37,962 [ scc.git] DEBUG src/js/views/info_panel_view.js | 293 -- 2026-10-04 23:42:37,962 [ scc.git] DEBUG src/js/views/label_suggestions.js | 753 ----- 2026-10-04 23:42:37,962 [ scc.git] DEBUG src/js/views/labels_from_maps_modal.js | 197 -- 2026-10-04 23:42:37,962 [ scc.git] DEBUG src/js/views/legend_view.js | 174 - 2026-10-04 23:42:37,962 [ scc.git] DEBUG src/js/views/lutpicker.js | 181 - 2026-10-04 23:42:37,962 [ scc.git] DEBUG src/js/views/modal_views.js | 536 --- 2026-10-04 23:42:37,962 [ scc.git] DEBUG src/js/views/open_local_file_modal.js | 77 - 2026-10-04 23:42:37,962 [ scc.git] DEBUG src/js/views/panel_view.js | 501 --- 2026-10-04 23:42:37,962 [ scc.git] DEBUG src/js/views/raphael-rect.js | 291 -- 2026-10-04 23:42:37,962 [ scc.git] DEBUG src/js/views/right_panel_view.js | 1572 --------- 2026-10-04 23:42:37,962 [ scc.git] DEBUG src/js/views/roi_loader_view.js | 250 -- 2026-10-04 23:42:37,962 [ scc.git] DEBUG src/js/views/roi_modal_view.js | 645 ---- 2026-10-04 23:42:37,962 [ scc.git] DEBUG src/js/views/scalebar_form_view.js | 230 -- 2026-10-04 23:42:37,962 [ scc.git] DEBUG src/js/views/svg_model_view.js | 441 --- 2026-10-04 23:42:37,962 [ scc.git] DEBUG src/js/views/util.csrf.js | 83 - 2026-10-04 23:42:37,962 [ scc.git] DEBUG src/js/views/util.js | 397 --- 2026-10-04 23:42:37,962 [ scc.git] DEBUG src/js/views/zt_sliders_view.js | 332 -- 2026-10-04 23:42:37,962 [ scc.git] DEBUG src/scss/styles.scss | 2 - 2026-10-04 23:42:37,962 [ scc.git] DEBUG src/shapeEditorTest.html | 198 -- 2026-10-04 23:42:37,962 [ scc.git] DEBUG src/templates/channel_slider.template.html | 90 - 2026-10-04 23:42:37,962 [ scc.git] DEBUG src/templates/checkbox_template.html | 4 - 2026-10-04 23:42:37,962 [ scc.git] DEBUG src/templates/colorbar.template.html | 42 - 2026-10-04 23:42:37,962 [ scc.git] DEBUG src/templates/colorbar_form.template.html | 137 - 2026-10-04 23:42:37,962 [ scc.git] DEBUG src/templates/figure_panel.template.html | 6 - 2026-10-04 23:42:37,962 [ scc.git] DEBUG src/templates/files/figure_file_item.template.html | 32 - 2026-10-04 23:42:37,962 [ scc.git] DEBUG src/templates/image_display_options.template.html | 34 - 2026-10-04 23:42:37,962 [ scc.git] DEBUG src/templates/info_panel.template.html | 54 - 2026-10-04 23:42:37,962 [ scc.git] DEBUG src/templates/labels/label.template.html | 8 - 2026-10-04 23:42:37,962 [ scc.git] DEBUG .../labels/label_right_vertical.template.html | 8 - 2026-10-04 23:42:37,962 [ scc.git] DEBUG src/templates/labels/label_table.template.html | 11 - 2026-10-04 23:42:37,962 [ scc.git] DEBUG src/templates/labels/label_vertical.template.html | 8 - 2026-10-04 23:42:37,962 [ scc.git] DEBUG src/templates/labels_form.template.html | 13 - 2026-10-04 23:42:37,963 [ scc.git] DEBUG src/templates/labels_form_inner.template.html | 128 - 2026-10-04 23:42:37,963 [ scc.git] DEBUG src/templates/lut_picker.template.html | 21 - 2026-10-04 23:42:37,963 [ scc.git] DEBUG .../modal_dialogs/crop_modal_roi.template.html | 30 - 2026-10-04 23:42:37,963 [ scc.git] DEBUG .../modal_dialogs/paper_setup_modal.template.html | 108 - 2026-10-04 23:42:37,963 [ scc.git] DEBUG .../modal_dialogs/preview_id_change.template.html | 65 - 2026-10-04 23:42:37,963 [ scc.git] DEBUG .../modal_dialogs/roi_modal_roi.template.html | 56 - 2026-10-04 23:42:37,963 [ scc.git] DEBUG .../modal_dialogs/roi_modal_shape.template.html | 42 - 2026-10-04 23:42:37,963 [ scc.git] DEBUG .../modal_dialogs/roi_zt_buttons.template.html | 9 - 2026-10-04 23:42:37,963 [ scc.git] DEBUG src/templates/rois_form.template.html | 246 -- 2026-10-04 23:42:37,963 [ scc.git] DEBUG src/templates/scalebar_form.template.html | 154 - 2026-10-04 23:42:37,963 [ scc.git] DEBUG src/templates/scalebar_panel.template.html | 10 - 2026-10-04 23:42:37,963 [ scc.git] DEBUG src/templates/shapes/shape_item_template.html | 12 - 2026-10-04 23:42:37,963 [ scc.git] DEBUG src/templates/shapes/shape_sidebar.template.html | 56 - 2026-10-04 23:42:37,963 [ scc.git] DEBUG src/templates/shapes/shape_toolbar.template.html | 226 -- 2026-10-04 23:42:37,963 [ scc.git] DEBUG src/templates/viewport.template.html | 5 - 2026-10-04 23:42:37,963 [ scc.git] DEBUG src/templates/viewport_inner.template.html | 12 - 2026-10-04 23:42:37,963 [ scc.git] DEBUG src/templates/xywh_panel.template.html | 60 - 2026-10-04 23:42:37,963 [ scc.git] DEBUG src/templates/zoom_crop.template.html | 28 - 2026-10-04 23:42:37,963 [ scc.git] DEBUG src/test.html | 25 - 2026-10-04 23:42:37,963 [ scc.git] DEBUG vite.config.js | 32 - 2026-10-04 23:42:37,963 [ scc.git] DEBUG 122 files changed, 115 insertions(+), 29753 deletions(-) 2026-10-04 23:42:37,963 [ scc.git] DEBUG delete mode 100644 .github/workflows/pages.yml 2026-10-04 23:42:37,963 [ scc.git] DEBUG create mode 100644 .gitmodules 2026-10-04 23:42:37,963 [ scc.git] DEBUG create mode 160000 figure 2026-10-04 23:42:37,963 [ scc.git] DEBUG delete mode 100644 omero_figure/scripts/__init__.py 2026-10-04 23:42:37,963 [ scc.git] DEBUG delete mode 100644 omero_figure/scripts/omero/__init__.py 2026-10-04 23:42:37,963 [ scc.git] DEBUG delete mode 100644 omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 2026-10-04 23:42:37,963 [ scc.git] DEBUG delete mode 100644 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DEBUG delete mode 100644 src/css/figure.css 2026-10-04 23:42:37,963 [ scc.git] DEBUG delete mode 100644 src/html/dialogs/scriptManagerDialog.html 2026-10-04 23:42:37,963 [ scc.git] DEBUG delete mode 100644 src/images/arrow-icon-16.png 2026-10-04 23:42:37,963 [ scc.git] DEBUG delete mode 100644 src/images/button-down-grey.png 2026-10-04 23:42:37,963 [ scc.git] DEBUG delete mode 100644 src/images/button-down.png 2026-10-04 23:42:37,963 [ scc.git] DEBUG delete mode 100644 src/images/button-flat.png 2026-10-04 23:42:37,963 [ scc.git] DEBUG delete mode 100644 src/images/button-up.png 2026-10-04 23:42:37,963 [ scc.git] DEBUG delete mode 100644 src/images/crop20.png 2026-10-04 23:42:37,963 [ scc.git] DEBUG delete mode 100644 src/images/cursor-icon-16.png 2026-10-04 23:42:37,963 [ scc.git] DEBUG delete mode 100644 src/images/ellipse-icon-16.png 2026-10-04 23:42:37,963 [ scc.git] DEBUG delete mode 100644 src/images/gradient.png 2026-10-04 23:42:37,963 [ scc.git] DEBUG delete mode 100644 src/images/hue.png 2026-10-04 23:42:37,963 [ scc.git] DEBUG delete mode 100644 src/images/line-icon-16.png 2026-10-04 23:42:37,963 [ scc.git] DEBUG delete mode 100644 src/images/luts_10.png 2026-10-04 23:42:37,963 [ scc.git] DEBUG delete mode 100644 src/images/markdown_dark32x20.png 2026-10-04 23:42:37,963 [ scc.git] DEBUG delete mode 100644 src/images/markdown_light32x20.png 2026-10-04 23:42:37,963 [ scc.git] DEBUG delete mode 100644 src/images/point-icon-24.png 2026-10-04 23:42:37,963 [ scc.git] DEBUG delete mode 100644 src/images/polygon-icon-16.png 2026-10-04 23:42:37,963 [ scc.git] DEBUG delete mode 100644 src/images/polyline-icon-16.png 2026-10-04 23:42:37,963 [ scc.git] DEBUG delete mode 100644 src/images/projection20.png 2026-10-04 23:42:37,963 [ scc.git] DEBUG delete mode 100644 src/images/square-outline-icon-16.png 2026-10-04 23:42:37,963 [ scc.git] DEBUG delete mode 100644 src/images/text-icon-24.png 2026-10-04 23:42:37,963 [ scc.git] DEBUG delete mode 100644 src/index.html 2026-10-04 23:42:37,963 [ scc.git] DEBUG delete mode 100644 src/js/main.js 2026-10-04 23:42:37,963 [ scc.git] DEBUG delete mode 100644 src/js/models/figure_model.js 2026-10-04 23:42:37,963 [ scc.git] DEBUG delete mode 100644 src/js/models/panel_model.js 2026-10-04 23:42:37,963 [ scc.git] DEBUG delete mode 100644 src/js/models/roi_model.js 2026-10-04 23:42:37,963 [ scc.git] DEBUG delete mode 100644 src/js/models/undo.js 2026-10-04 23:42:37,963 [ scc.git] DEBUG delete mode 100644 src/js/models/zarr_utils.js 2026-10-04 23:42:37,963 [ scc.git] DEBUG delete mode 100644 src/js/shapeEditorTest.js 2026-10-04 23:42:37,963 [ scc.git] DEBUG delete mode 100644 src/js/shape_editor/ellipse.js 2026-10-04 23:42:37,964 [ scc.git] DEBUG delete mode 100644 src/js/shape_editor/line.js 2026-10-04 23:42:37,964 [ scc.git] DEBUG delete mode 100644 src/js/shape_editor/point.js 2026-10-04 23:42:37,964 [ scc.git] DEBUG delete mode 100644 src/js/shape_editor/polygon.js 2026-10-04 23:42:37,964 [ scc.git] DEBUG delete mode 100644 src/js/shape_editor/rect.js 2026-10-04 23:42:37,964 [ scc.git] DEBUG delete mode 100644 src/js/shape_editor/shape_manager.js 2026-10-04 23:42:37,964 [ scc.git] DEBUG delete mode 100644 src/js/shape_editor/text.js 2026-10-04 23:42:37,964 [ scc.git] DEBUG delete mode 100644 src/js/views/backbone.mousetrap.js 2026-10-04 23:42:37,964 [ scc.git] DEBUG delete mode 100644 src/js/views/channel_slider_view.js 2026-10-04 23:42:37,964 [ scc.git] DEBUG delete mode 100644 src/js/views/chgrp_modal_view.js 2026-10-04 23:42:37,964 [ scc.git] DEBUG delete mode 100644 src/js/views/colorbar_form_view.js 2026-10-04 23:42:37,964 [ scc.git] DEBUG delete mode 100644 src/js/views/colorpicker.js 2026-10-04 23:42:37,964 [ scc.git] DEBUG delete mode 100644 src/js/views/crop_modal_view.js 2026-10-04 23:42:37,964 [ scc.git] DEBUG delete mode 100644 src/js/views/figure_view.js 2026-10-04 23:42:37,964 [ scc.git] DEBUG delete mode 100644 src/js/views/files.js 2026-10-04 23:42:37,964 [ scc.git] DEBUG delete mode 100644 src/js/views/info_panel_view.js 2026-10-04 23:42:37,964 [ scc.git] DEBUG delete mode 100644 src/js/views/label_suggestions.js 2026-10-04 23:42:37,964 [ scc.git] DEBUG delete mode 100644 src/js/views/labels_from_maps_modal.js 2026-10-04 23:42:37,964 [ scc.git] DEBUG delete mode 100644 src/js/views/legend_view.js 2026-10-04 23:42:37,964 [ scc.git] DEBUG delete mode 100644 src/js/views/lutpicker.js 2026-10-04 23:42:37,964 [ scc.git] DEBUG delete mode 100644 src/js/views/modal_views.js 2026-10-04 23:42:37,964 [ scc.git] DEBUG delete mode 100644 src/js/views/open_local_file_modal.js 2026-10-04 23:42:37,964 [ scc.git] DEBUG delete mode 100644 src/js/views/panel_view.js 2026-10-04 23:42:37,964 [ scc.git] DEBUG delete mode 100644 src/js/views/raphael-rect.js 2026-10-04 23:42:37,964 [ scc.git] DEBUG delete mode 100644 src/js/views/right_panel_view.js 2026-10-04 23:42:37,964 [ scc.git] DEBUG delete mode 100644 src/js/views/roi_loader_view.js 2026-10-04 23:42:37,964 [ scc.git] DEBUG delete mode 100644 src/js/views/roi_modal_view.js 2026-10-04 23:42:37,964 [ scc.git] DEBUG delete mode 100644 src/js/views/scalebar_form_view.js 2026-10-04 23:42:37,964 [ scc.git] DEBUG delete mode 100644 src/js/views/svg_model_view.js 2026-10-04 23:42:37,964 [ scc.git] DEBUG delete mode 100644 src/js/views/util.csrf.js 2026-10-04 23:42:37,964 [ scc.git] DEBUG delete mode 100644 src/js/views/util.js 2026-10-04 23:42:37,964 [ scc.git] DEBUG delete mode 100644 src/js/views/zt_sliders_view.js 2026-10-04 23:42:37,964 [ scc.git] DEBUG delete mode 100644 src/scss/styles.scss 2026-10-04 23:42:37,964 [ scc.git] DEBUG delete mode 100644 src/shapeEditorTest.html 2026-10-04 23:42:37,964 [ scc.git] DEBUG delete mode 100644 src/templates/channel_slider.template.html 2026-10-04 23:42:37,964 [ scc.git] DEBUG delete mode 100644 src/templates/checkbox_template.html 2026-10-04 23:42:37,964 [ scc.git] DEBUG delete mode 100644 src/templates/colorbar.template.html 2026-10-04 23:42:38,000 [ scc.git] DEBUG delete mode 100644 src/templates/colorbar_form.template.html 2026-10-04 23:42:38,000 [ scc.git] DEBUG delete mode 100644 src/templates/figure_panel.template.html 2026-10-04 23:42:38,000 [ scc.git] DEBUG delete mode 100644 src/templates/files/figure_file_item.template.html 2026-10-04 23:42:38,000 [ scc.git] DEBUG delete mode 100644 src/templates/image_display_options.template.html 2026-10-04 23:42:38,000 [ scc.git] DEBUG delete mode 100644 src/templates/info_panel.template.html 2026-10-04 23:42:38,000 [ scc.git] DEBUG delete mode 100644 src/templates/labels/label.template.html 2026-10-04 23:42:38,000 [ scc.git] DEBUG delete mode 100644 src/templates/labels/label_right_vertical.template.html 2026-10-04 23:42:38,000 [ scc.git] DEBUG delete mode 100644 src/templates/labels/label_table.template.html 2026-10-04 23:42:38,000 [ scc.git] DEBUG delete mode 100644 src/templates/labels/label_vertical.template.html 2026-10-04 23:42:38,000 [ scc.git] DEBUG delete mode 100644 src/templates/labels_form.template.html 2026-10-04 23:42:38,000 [ scc.git] DEBUG delete mode 100644 src/templates/labels_form_inner.template.html 2026-10-04 23:42:38,000 [ scc.git] DEBUG delete mode 100644 src/templates/lut_picker.template.html 2026-10-04 23:42:38,000 [ scc.git] DEBUG delete mode 100644 src/templates/modal_dialogs/crop_modal_roi.template.html 2026-10-04 23:42:38,000 [ scc.git] DEBUG delete mode 100644 src/templates/modal_dialogs/paper_setup_modal.template.html 2026-10-04 23:42:38,000 [ scc.git] DEBUG delete mode 100644 src/templates/modal_dialogs/preview_id_change.template.html 2026-10-04 23:42:38,000 [ scc.git] DEBUG delete mode 100644 src/templates/modal_dialogs/roi_modal_roi.template.html 2026-10-04 23:42:38,000 [ scc.git] DEBUG delete mode 100644 src/templates/modal_dialogs/roi_modal_shape.template.html 2026-10-04 23:42:38,000 [ scc.git] DEBUG delete mode 100644 src/templates/modal_dialogs/roi_zt_buttons.template.html 2026-10-04 23:42:38,000 [ scc.git] DEBUG delete mode 100644 src/templates/rois_form.template.html 2026-10-04 23:42:38,000 [ scc.git] DEBUG delete mode 100644 src/templates/scalebar_form.template.html 2026-10-04 23:42:38,000 [ scc.git] DEBUG delete mode 100644 src/templates/scalebar_panel.template.html 2026-10-04 23:42:38,000 [ scc.git] DEBUG delete mode 100644 src/templates/shapes/shape_item_template.html 2026-10-04 23:42:38,000 [ scc.git] DEBUG delete mode 100644 src/templates/shapes/shape_sidebar.template.html 2026-10-04 23:42:38,000 [ scc.git] DEBUG delete mode 100644 src/templates/shapes/shape_toolbar.template.html 2026-10-04 23:42:38,000 [ scc.git] DEBUG delete mode 100644 src/templates/viewport.template.html 2026-10-04 23:42:38,000 [ scc.git] DEBUG delete mode 100644 src/templates/viewport_inner.template.html 2026-10-04 23:42:38,000 [ scc.git] DEBUG delete mode 100644 src/templates/xywh_panel.template.html 2026-10-04 23:42:38,000 [ scc.git] DEBUG delete mode 100644 src/templates/zoom_crop.template.html 2026-10-04 23:42:38,000 [ scc.git] DEBUG delete mode 100644 src/test.html 2026-10-04 23:42:38,000 [ scc.git] DEBUG delete mode 100755 vite.config.js 2026-10-04 23:42:38,181 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:42:38,182 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...9ffbb2959a93d788f12be0c4452f030315926ab2' 2026-10-04 23:42:38,238 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:42:38,254 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 710 (Bump dompurify from 3.4.13 to 3.4.16) 9ffbb2959a93d788f12be0c4452f030315926ab2' 2026-10-04 23:42:38,487 [ scc.git] DEBUG CONFLICT (modify/delete): package-lock.json deleted in HEAD and modified in 9ffbb2959a93d788f12be0c4452f030315926ab2. Version 9ffbb2959a93d788f12be0c4452f030315926ab2 of package-lock.json left in tree. 2026-10-04 23:42:38,487 [ scc.git] DEBUG CONFLICT (modify/delete): package.json deleted in HEAD and modified in 9ffbb2959a93d788f12be0c4452f030315926ab2. Version 9ffbb2959a93d788f12be0c4452f030315926ab2 of package.json left in tree. 2026-10-04 23:42:38,515 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-10-04 23:42:38,519 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-10-04 23:42:38,554 [ scc.git] DEBUG Calling 'git reset --hard ac75644c46fe7f0c268470b0103eb211666858bd' 2026-10-04 23:42:38,692 [ scc.git] DEBUG HEAD is now at ac75644c merge master -Dorg -Ssuccess-only: PR 706 (Figure repo migration) 2026-10-04 23:42:38,882 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:42:38,883 [ scc.git] DEBUG Calling 'git merge-base 3195c3df4e7bf2507d9c942d5d8c9a8566498147 9ffbb2959a93d788f12be0c4452f030315926ab2' 2026-10-04 23:42:38,919 [ scc.git] DEBUG Calling 'git diff --name-only 3195c3df4e7bf2507d9c942d5d8c9a8566498147..3195c3df4e7bf2507d9c942d5d8c9a8566498147' 2026-10-04 23:42:38,944 [ scc.git] INFO - PR 710 dependabot[bot] 'Bump dompurify from 3.4.13 to 3.4.16' Conflicting PR. Removed from build [OMERO-plugins-push#100](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/100/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/100/consoleText) for more details. Possible conflicts: - PR #706 will-moore 'Figure repo migration' - package-lock.json - package.json --conflicts 2026-10-04 23:42:38,955 [ scc.config] DEBUG Found github.token 2026-10-04 23:42:38,956 [ scc.git] DEBUG Adding comment to issue #710. 2026-10-04 23:42:39,948 [urllib3.conn] DEBUG https://api.github.com:443 "POST /repos/ome/omero-figure/issues/710/comments HTTP/1.1" 201 2062 2026-10-04 23:42:39,948 [ scc.git] DEBUG Calling 'git submodule update' 2026-10-04 23:42:40,054 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:42:40,054 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:42:40,069 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-04 23:42:40,190 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-10-04 23:42:40,276 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb10fc4c790> has no local changes 2026-10-04 23:42:40,276 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-figure Updating 9cc36cde..3195c3df Previously merged: - PR 704 jburel 'Revert commit 49ae9c9' - PR 703 will-moore 'Readme remove rc' - PR 700 will-moore 'Fix parentheses in zoom level for loop for export script' - PR 692 will-moore 'colorbar lut background fix' - PR 701 will-moore 'bump nanoid to 3.3.18 with 'npm audit fix'' - PR 698 dependabot[bot] 'Bump dompurify from 3.4.9 to 3.4.13' - PR 697 dependabot[bot] 'Bump postcss from 8.5.15 to 8.5.25' - PR 695 dependabot[bot] 'Bump immutable from 5.1.6 to 5.1.9' - PR 693 dependabot[bot] 'Bump dompurify from 3.4.0 to 3.4.9' - PR 691 dependabot[bot] 'Bump esbuild and vite' - PR 686 will-moore 'Add note about zarr etc requirement for export script with zarr images' - PR 690 dependabot[bot] 'Bump postcss from 8.5.3 to 8.5.15' - PR 681 dependabot[bot] 'Bump dompurify from 3.3.2 to 3.4.0' - PR 688 will-moore 'app handles ?image=1 without needing /new?image=1' - PR 685 will-moore 'Fix static files links for release build' - PR 683 will-moore 'Add touch support for clicking on single panel' - PR 680 will-moore 'Use --pre install for export script in README' - PR 684 will-moore 'Fix PKG_VERSION fix in publish_pypi.yml' - PR 682 will-moore 'Enable pre-release rc workflow with bumpversion and publish to pypi' - PR 679 will-moore 'Remove commit from gist demoUrl to load latest, with livingobjects URLs' - PR 677 dependabot[bot] 'Bump vite from 6.4.1 to 6.4.2' - PR 666 will-moore 'Standalone app' - PR 676 dependabot[bot] 'Bump picomatch' - PR 669 will-moore 'Standalone python script' - PR 662 will-moore 'Export script handles OME-zarr images' - PR 663 will-moore 'Zarr' - PR 674 dependabot[bot] 'Bump immutable from 4.1.0 to 4.3.8' - PR 675 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.2' - PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8' - PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues' - PR 667 Tom-TBT 'Label suggestion interface' - PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID' - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO' - PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0' - PR 664 Nirkan 'Handle many channels ' - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes' - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540' - PR 661 Rdornier 'Align to grid - check if panels are already in the grid' - PR 649 jburel 'Replace manual changelog by automated GH release step' - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout' - PR 637 Rdornier 'Fix scalebar position' - PR 600 Rdornier 'Label on rois' - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles' - PR 651 Rdornier 'More compliant align to grid' - PR 650 jburel 'Bump Python version' - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…' - PR 610 will-moore 'Add docs/contributing.rst' - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1' - PR 646 JensWendt 'fix word wrap of image names' - PR 612 will-moore 'Script version' - PR 630 will-moore 'Fix color and position for ALL new panel insets' - PR 616 Rdornier 'Fix labels around border' - PR 605 Tom-TBT 'Colorbar feature' - PR 638 Rdornier 'Fix arrow opacity' - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4' - PR 635 dependabot[bot] 'Bump esbuild and vite' - PR 623 will-moore 'Fix wrapping of label X button. see issues/622' - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 706 will-moore 'Figure repo migration' Conflicting PRs (not included): - PR 710 dependabot[bot] 'Bump dompurify from 3.4.13 to 3.4.16' Generated by OMERO-plugins-push#100 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/100/)' 2026-10-04 23:42:40,456 [ scc.git] DEBUG [detached HEAD d88319ed] merge master -Dorg -Ssuccess-only 2026-10-04 23:42:40,461 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:42:40,461 [ scc.repo] DEBUG ## PRs found: 2026-10-04 23:42:40,927 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/pulls HTTP/1.1" 200 None 2026-10-04 23:42:41,524 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/31 HTTP/1.1" 200 None 2026-10-04 23:42:41,524 [ scc.repo] DEBUG # ... Include label: dependencies 2026-10-04 23:42:42,189 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c?page=1 HTTP/1.1" 200 None 2026-10-04 23:42:42,734 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-04 23:42:43,284 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-10-04 23:42:43,930 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c?page=1 HTTP/1.1" 200 None 2026-10-04 23:42:44,396 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/statuses/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c?per_page=1 HTTP/1.1" 200 2 2026-10-04 23:42:44,396 [ scc.repo] DEBUG - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-10-04 23:42:44,889 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/18 HTTP/1.1" 200 None 2026-10-04 23:42:45,378 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/18/comments HTTP/1.1" 200 None 2026-10-04 23:42:45,887 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337?page=1 HTTP/1.1" 200 None 2026-10-04 23:42:46,376 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-04 23:42:46,846 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337?page=1 HTTP/1.1" 200 None 2026-10-04 23:42:47,305 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/statuses/45aed4d15501fa5a524a8b500af8d426f0f6b337?per_page=1 HTTP/1.1" 200 2 2026-10-04 23:42:47,306 [ scc.repo] DEBUG - PR 18 jburel 'default size z value' 2026-10-04 23:42:47,306 [ scc.repo] DEBUG ## Branches found: 2026-10-04 23:42:47,306 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage 2026-10-04 23:42:47,307 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:42:47,307 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:42:47,329 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-10-04 23:42:47,349 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-10-04 23:42:47,349 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-10-04 23:42:47,373 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-10-04 23:42:47,434 [ scc.git] DEBUG Already up to date. 2026-10-04 23:42:47,434 [ scc.git] DEBUG Calling 'git fetch origin pull/18/head' 2026-10-04 23:42:47,944 [ scc.git] DEBUG From https://github.com/ome/omero-fpbioimage 2026-10-04 23:42:47,945 [ scc.git] DEBUG * branch refs/pull/18/head -> FETCH_HEAD 2026-10-04 23:42:47,972 [ scc.git] DEBUG Calling 'git fetch origin pull/31/head' 2026-10-04 23:42:48,384 [ scc.git] DEBUG From https://github.com/ome/omero-fpbioimage 2026-10-04 23:42:48,384 [ scc.git] DEBUG * branch refs/pull/31/head -> FETCH_HEAD 2026-10-04 23:42:48,412 [ scc.git] DEBUG ## Unique users: [] 2026-10-04 23:42:48,412 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:42:48,412 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:42:48,430 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45aed4d15501fa5a524a8b500af8d426f0f6b337' 2026-10-04 23:42:48,464 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:42:48,480 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 18 (default size z value) 45aed4d15501fa5a524a8b500af8d426f0f6b337' 2026-10-04 23:42:48,670 [ scc.git] DEBUG Auto-merging omero_fpbioimage/views.py 2026-10-04 23:42:48,777 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-04 23:42:48,850 [ scc.git] DEBUG omero_fpbioimage/views.py | 2 ++ 2026-10-04 23:42:48,850 [ scc.git] DEBUG 1 file changed, 2 insertions(+) 2026-10-04 23:42:49,037 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:42:49,038 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c' 2026-10-04 23:42:49,073 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:42:49,088 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 31 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c' 2026-10-04 23:42:49,286 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-04 23:42:49,357 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-10-04 23:42:49,358 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-10-04 23:42:49,546 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:42:49,547 [ scc.git] DEBUG Calling 'git submodule update' 2026-10-04 23:42:49,687 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:42:49,688 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:42:49,703 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-04 23:42:49,821 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-10-04 23:42:49,882 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb10e9d4990> has no local changes 2026-10-04 23:42:49,882 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-fpbioimage Already up to date. Merged PRs: - PR 18 jburel 'default size z value' - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#100 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/100/)' 2026-10-04 23:42:50,044 [ scc.git] DEBUG [detached HEAD 626557f] merge master -Dorg -Ssuccess-only 2026-10-04 23:42:50,047 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:42:50,047 [ scc.repo] DEBUG ## PRs found: 2026-10-04 23:42:50,345 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/pulls HTTP/1.1" 200 None 2026-10-04 23:42:50,883 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/119 HTTP/1.1" 200 None 2026-10-04 23:42:51,394 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/119/comments HTTP/1.1" 200 None 2026-10-04 23:42:51,878 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/9042541/issues/119/comments?page=2 HTTP/1.1" 200 None 2026-10-04 23:42:51,879 [ scc.repo] DEBUG # ... Include label: dependencies 2026-10-04 23:42:52,606 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062?page=1 HTTP/1.1" 200 None 2026-10-04 23:42:53,117 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-04 23:42:53,630 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062?page=1 HTTP/1.1" 200 None 2026-10-04 23:42:54,078 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/00257fc993a12b3f78a45db039e7bf2c8a406062?per_page=1 HTTP/1.1" 200 2 2026-10-04 23:42:54,079 [ scc.repo] DEBUG - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' 2026-10-04 23:42:54,588 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/118 HTTP/1.1" 200 None 2026-10-04 23:42:55,108 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/118/comments HTTP/1.1" 200 None 2026-10-04 23:42:55,607 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/9042541/issues/118/comments?page=2 HTTP/1.1" 200 None 2026-10-04 23:42:55,609 [ scc.repo] DEBUG # ... Include label: dependencies 2026-10-04 23:42:56,437 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d?page=1 HTTP/1.1" 200 None 2026-10-04 23:42:56,927 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-04 23:42:57,425 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d?page=1 HTTP/1.1" 200 None 2026-10-04 23:42:57,874 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/2bf34ddacb511c52e473a104fe2a1c00204bae1d?per_page=1 HTTP/1.1" 200 2 2026-10-04 23:42:57,875 [ scc.repo] DEBUG - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' 2026-10-04 23:42:58,371 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/117 HTTP/1.1" 200 None 2026-10-04 23:42:58,372 [ scc.repo] DEBUG # ... Include label: dependencies 2026-10-04 23:42:58,969 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c?page=1 HTTP/1.1" 200 None 2026-10-04 23:42:59,466 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-04 23:42:59,960 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c?page=1 HTTP/1.1" 200 None 2026-10-04 23:43:00,436 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/155d7ddab4f04c4a91bffc5736ba0741003c566c?per_page=1 HTTP/1.1" 200 2 2026-10-04 23:43:00,437 [ scc.repo] DEBUG - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' 2026-10-04 23:43:00,946 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/116 HTTP/1.1" 200 None 2026-10-04 23:43:00,947 [ scc.repo] DEBUG # ... Include label: dependencies 2026-10-04 23:43:01,545 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d?page=1 HTTP/1.1" 200 None 2026-10-04 23:43:02,004 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-04 23:43:02,505 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d?page=1 HTTP/1.1" 200 None 2026-10-04 23:43:02,958 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d?per_page=1 HTTP/1.1" 200 2 2026-10-04 23:43:02,958 [ scc.repo] DEBUG - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' 2026-10-04 23:43:03,462 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/115 HTTP/1.1" 200 None 2026-10-04 23:43:03,947 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/115/comments HTTP/1.1" 200 None 2026-10-04 23:43:03,947 [ scc.repo] DEBUG # ... Include label: dependencies 2026-10-04 23:43:04,564 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5?page=1 HTTP/1.1" 200 None 2026-10-04 23:43:05,097 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-04 23:43:05,604 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5?page=1 HTTP/1.1" 200 None 2026-10-04 23:43:06,067 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/25020d66a7df4ec3cad5967706bb7d13b1493bb5?per_page=1 HTTP/1.1" 200 2 2026-10-04 23:43:06,067 [ scc.repo] DEBUG - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' 2026-10-04 23:43:06,576 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/114 HTTP/1.1" 200 None 2026-10-04 23:43:06,577 [ scc.repo] DEBUG # ... Include label: dependencies 2026-10-04 23:43:07,192 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b?page=1 HTTP/1.1" 200 None 2026-10-04 23:43:07,699 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-04 23:43:08,190 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b?page=1 HTTP/1.1" 200 None 2026-10-04 23:43:08,641 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/cf75d259b2882000d6be73bc1c11c99c27aa439b?per_page=1 HTTP/1.1" 200 2 2026-10-04 23:43:08,641 [ scc.repo] DEBUG - PR 114 dependabot[bot] 'Bump tar and fsevents' 2026-10-04 23:43:09,139 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/113 HTTP/1.1" 200 None 2026-10-04 23:43:09,140 [ scc.repo] DEBUG # ... Include label: dependencies 2026-10-04 23:43:09,763 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e?page=1 HTTP/1.1" 200 None 2026-10-04 23:43:10,243 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-04 23:43:10,753 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e?page=1 HTTP/1.1" 200 None 2026-10-04 23:43:11,203 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/6a657d7a4e0bbfaa3464e851023f29c63db15d4e?per_page=1 HTTP/1.1" 200 2 2026-10-04 23:43:11,203 [ scc.repo] DEBUG - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' 2026-10-04 23:43:11,203 [ scc.repo] DEBUG ## Branches found: 2026-10-04 23:43:11,203 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery 2026-10-04 23:43:11,205 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:43:11,205 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:43:11,227 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-10-04 23:43:11,250 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-10-04 23:43:11,250 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-10-04 23:43:11,274 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-10-04 23:43:11,340 [ scc.git] DEBUG Already up to date. 2026-10-04 23:43:11,340 [ scc.git] DEBUG Calling 'git fetch origin pull/113/head' 2026-10-04 23:43:11,776 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-10-04 23:43:11,776 [ scc.git] DEBUG * branch refs/pull/113/head -> FETCH_HEAD 2026-10-04 23:43:11,802 [ scc.git] DEBUG Calling 'git fetch origin pull/114/head' 2026-10-04 23:43:12,239 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-10-04 23:43:12,239 [ scc.git] DEBUG * branch refs/pull/114/head -> FETCH_HEAD 2026-10-04 23:43:12,265 [ scc.git] DEBUG Calling 'git fetch origin pull/115/head' 2026-10-04 23:43:12,832 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-10-04 23:43:12,833 [ scc.git] DEBUG * branch refs/pull/115/head -> FETCH_HEAD 2026-10-04 23:43:12,857 [ scc.git] DEBUG Calling 'git fetch origin pull/116/head' 2026-10-04 23:43:13,266 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-10-04 23:43:13,266 [ scc.git] DEBUG * branch refs/pull/116/head -> FETCH_HEAD 2026-10-04 23:43:13,290 [ scc.git] DEBUG Calling 'git fetch origin pull/117/head' 2026-10-04 23:43:13,690 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-10-04 23:43:13,690 [ scc.git] DEBUG * branch refs/pull/117/head -> FETCH_HEAD 2026-10-04 23:43:13,717 [ scc.git] DEBUG Calling 'git fetch origin pull/118/head' 2026-10-04 23:43:14,139 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-10-04 23:43:14,139 [ scc.git] DEBUG * branch refs/pull/118/head -> FETCH_HEAD 2026-10-04 23:43:14,167 [ scc.git] DEBUG Calling 'git fetch origin pull/119/head' 2026-10-04 23:43:14,549 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-10-04 23:43:14,550 [ scc.git] DEBUG * branch refs/pull/119/head -> FETCH_HEAD 2026-10-04 23:43:14,575 [ scc.git] DEBUG ## Unique users: [] 2026-10-04 23:43:14,575 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:43:14,575 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:43:14,593 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6a657d7a4e0bbfaa3464e851023f29c63db15d4e' 2026-10-04 23:43:14,619 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:43:14,635 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 113 (Bump elliptic from 6.5.4 to 6.6.1) 6a657d7a4e0bbfaa3464e851023f29c63db15d4e' 2026-10-04 23:43:14,848 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-04 23:43:14,906 [ scc.git] DEBUG package-lock.json | 12 ++++++------ 2026-10-04 23:43:14,907 [ scc.git] DEBUG 1 file changed, 6 insertions(+), 6 deletions(-) 2026-10-04 23:43:15,089 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:43:15,089 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...cf75d259b2882000d6be73bc1c11c99c27aa439b' 2026-10-04 23:43:15,118 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:43:15,133 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 114 (Bump tar and fsevents) cf75d259b2882000d6be73bc1c11c99c27aa439b' 2026-10-04 23:43:15,282 [ scc.git] DEBUG Auto-merging package-lock.json 2026-10-04 23:43:15,348 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-04 23:43:15,409 [ scc.git] DEBUG package-lock.json | 625 +++--------------------------------------------------- 2026-10-04 23:43:15,409 [ scc.git] DEBUG 1 file changed, 29 insertions(+), 596 deletions(-) 2026-10-04 23:43:15,600 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:43:15,601 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25020d66a7df4ec3cad5967706bb7d13b1493bb5' 2026-10-04 23:43:15,636 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:43:15,649 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 115 (Bump micromatch, webpack-cli and webpack) 25020d66a7df4ec3cad5967706bb7d13b1493bb5' 2026-10-04 23:43:15,811 [ scc.git] DEBUG Auto-merging package-lock.json 2026-10-04 23:43:15,811 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2026-10-04 23:43:15,837 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-10-04 23:43:15,838 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-10-04 23:43:15,865 [ scc.git] DEBUG Calling 'git reset --hard 19b7c496712eb6e0130f19e8591c8e2de62531c0' 2026-10-04 23:43:16,027 [ scc.git] DEBUG HEAD is now at 19b7c49 merge master -Dorg -Ssuccess-only: PR 114 (Bump tar and fsevents) 2026-10-04 23:43:16,228 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:43:16,229 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 25020d66a7df4ec3cad5967706bb7d13b1493bb5' 2026-10-04 23:43:16,251 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd' 2026-10-04 23:43:16,268 [ scc.git] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' Conflicting PR. Removed from build [OMERO-plugins-push#100](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/100/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/100/consoleText) for more details. Possible conflicts: - PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - package-lock.json - PR #114 dependabot[bot] 'Bump tar and fsevents' - package-lock.json --conflicts 2026-10-04 23:43:16,278 [ scc.config] DEBUG Found github.token 2026-10-04 23:43:16,279 [ scc.git] DEBUG Not adding comment to issue #115, already --conflicts. 2026-10-04 23:43:16,279 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d' 2026-10-04 23:43:16,301 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:43:16,325 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 116 (Bump browserify-sign from 4.0.4 to 4.2.3) 42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d' 2026-10-04 23:43:16,490 [ scc.git] DEBUG Auto-merging package-lock.json 2026-10-04 23:43:16,568 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-04 23:43:16,639 [ scc.git] DEBUG package-lock.json | 119 +++++++++++++++++++++++++++++++++++++++++++++++++----- 2026-10-04 23:43:16,639 [ scc.git] DEBUG 1 file changed, 108 insertions(+), 11 deletions(-) 2026-10-04 23:43:16,844 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:43:16,845 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...155d7ddab4f04c4a91bffc5736ba0741003c566c' 2026-10-04 23:43:16,883 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:43:16,897 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6) 155d7ddab4f04c4a91bffc5736ba0741003c566c' 2026-10-04 23:43:17,060 [ scc.git] DEBUG Auto-merging package-lock.json 2026-10-04 23:43:17,135 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-04 23:43:17,200 [ scc.git] DEBUG package-lock.json | 6 +++--- 2026-10-04 23:43:17,200 [ scc.git] DEBUG 1 file changed, 3 insertions(+), 3 deletions(-) 2026-10-04 23:43:17,386 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:43:17,386 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2bf34ddacb511c52e473a104fe2a1c00204bae1d' 2026-10-04 23:43:17,420 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:43:17,434 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 118 (Bump braces, webpack-cli and webpack) 2bf34ddacb511c52e473a104fe2a1c00204bae1d' 2026-10-04 23:43:17,630 [ scc.git] DEBUG Auto-merging package-lock.json 2026-10-04 23:43:17,631 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2026-10-04 23:43:17,660 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-10-04 23:43:17,662 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-10-04 23:43:17,694 [ scc.git] DEBUG Calling 'git reset --hard dc9ac379a24c798cf2c83f5e62f897f721a49cec' 2026-10-04 23:43:17,872 [ scc.git] DEBUG HEAD is now at dc9ac37 merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6) 2026-10-04 23:43:18,041 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:43:18,042 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 2bf34ddacb511c52e473a104fe2a1c00204bae1d' 2026-10-04 23:43:18,069 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd' 2026-10-04 23:43:18,089 [ scc.git] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' Conflicting PR. Removed from build [OMERO-plugins-push#100](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/100/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/100/consoleText) for more details. Possible conflicts: - PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - package-lock.json - PR #114 dependabot[bot] 'Bump tar and fsevents' - package-lock.json - PR #115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - package-lock.json - PR #116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - package-lock.json - PR #117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' - package-lock.json --conflicts 2026-10-04 23:43:18,102 [ scc.config] DEBUG Found github.token 2026-10-04 23:43:18,102 [ scc.git] DEBUG Not adding comment to issue #118, already --conflicts. 2026-10-04 23:43:18,102 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...00257fc993a12b3f78a45db039e7bf2c8a406062' 2026-10-04 23:43:18,132 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:43:18,147 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 119 (Bump serialize-javascript and webpack) 00257fc993a12b3f78a45db039e7bf2c8a406062' 2026-10-04 23:43:18,344 [ scc.git] DEBUG Auto-merging package-lock.json 2026-10-04 23:43:18,344 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2026-10-04 23:43:18,375 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-10-04 23:43:18,376 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-10-04 23:43:18,414 [ scc.git] DEBUG Calling 'git reset --hard dc9ac379a24c798cf2c83f5e62f897f721a49cec' 2026-10-04 23:43:18,564 [ scc.git] DEBUG HEAD is now at dc9ac37 merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6) 2026-10-04 23:43:18,755 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:43:18,756 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 00257fc993a12b3f78a45db039e7bf2c8a406062' 2026-10-04 23:43:18,780 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd' 2026-10-04 23:43:18,797 [ scc.git] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' Conflicting PR. Removed from build [OMERO-plugins-push#100](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/100/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/100/consoleText) for more details. Possible conflicts: - PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - package-lock.json - PR #114 dependabot[bot] 'Bump tar and fsevents' - package-lock.json - PR #115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - package-lock.json - PR #116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - package-lock.json - PR #117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' - package-lock.json - PR #118 dependabot[bot] 'Bump braces, webpack-cli and webpack' - package-lock.json --conflicts 2026-10-04 23:43:18,809 [ scc.config] DEBUG Found github.token 2026-10-04 23:43:18,809 [ scc.git] DEBUG Not adding comment to issue #119, already --conflicts. 2026-10-04 23:43:18,810 [ scc.git] DEBUG Calling 'git submodule update' 2026-10-04 23:43:18,932 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:43:18,932 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:43:18,944 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-04 23:43:19,077 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-10-04 23:43:19,159 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb10fb2f710> has no local changes 2026-10-04 23:43:19,159 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-gallery Already up to date. Merged PRs: - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - PR 114 dependabot[bot] 'Bump tar and fsevents' - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' Conflicting PRs (not included): - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' Generated by OMERO-plugins-push#100 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/100/)' 2026-10-04 23:43:19,336 [ scc.git] DEBUG [detached HEAD f4fffb1] merge master -Dorg -Ssuccess-only 2026-10-04 23:43:19,338 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:43:19,338 [ scc.repo] DEBUG ## PRs found: 2026-10-04 23:43:19,658 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls HTTP/1.1" 200 None 2026-10-04 23:43:20,155 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/532 HTTP/1.1" 200 None 2026-10-04 23:43:20,645 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/532/comments HTTP/1.1" 200 None 2026-10-04 23:43:21,233 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/fb88f3a09446141b1d1bc276c87ea6a832ff1b3a?page=1 HTTP/1.1" 200 None 2026-10-04 23:43:21,801 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/fb88f3a09446141b1d1bc276c87ea6a832ff1b3a/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-04 23:43:22,337 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/fb88f3a09446141b1d1bc276c87ea6a832ff1b3a/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-10-04 23:43:22,817 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/fb88f3a09446141b1d1bc276c87ea6a832ff1b3a?page=1 HTTP/1.1" 200 None 2026-10-04 23:43:23,318 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/fb88f3a09446141b1d1bc276c87ea6a832ff1b3a?per_page=1 HTTP/1.1" 200 2 2026-10-04 23:43:23,319 [ scc.repo] DEBUG - PR 532 will-moore 'Zarr layers' 2026-10-04 23:43:23,800 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/471 HTTP/1.1" 200 None 2026-10-04 23:43:24,294 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/471/comments HTTP/1.1" 200 None 2026-10-04 23:43:24,853 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9?page=1 HTTP/1.1" 200 None 2026-10-04 23:43:25,374 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-04 23:43:25,853 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9?page=1 HTTP/1.1" 200 None 2026-10-04 23:43:26,308 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/448d042a58da05a522531356cc58c1e35b5744d9?per_page=1 HTTP/1.1" 200 2 2026-10-04 23:43:26,309 [ scc.repo] DEBUG - PR 471 will-moore 'Z projection disabled tooltip' 2026-10-04 23:43:26,309 [ scc.repo] DEBUG ## Branches found: 2026-10-04 23:43:26,309 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer 2026-10-04 23:43:26,310 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:43:26,310 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:43:26,328 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-10-04 23:43:26,351 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-10-04 23:43:26,351 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-10-04 23:43:27,729 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-10-04 23:43:28,691 [ scc.git] DEBUG Updating 7a798cee..0a836211 2026-10-04 23:43:29,306 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/574 HTTP/1.1" 200 None 2026-10-04 23:43:30,094 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/573 HTTP/1.1" 200 None 2026-10-04 23:43:31,062 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/572 HTTP/1.1" 200 None 2026-10-04 23:43:31,824 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/571 HTTP/1.1" 200 None 2026-10-04 23:43:32,593 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/570 HTTP/1.1" 200 None 2026-10-04 23:43:33,369 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/568 HTTP/1.1" 200 None 2026-10-04 23:43:34,069 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/566 HTTP/1.1" 200 None 2026-10-04 23:43:34,801 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/565 HTTP/1.1" 200 None 2026-10-04 23:43:35,592 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/564 HTTP/1.1" 200 None 2026-10-04 23:43:36,388 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/567 HTTP/1.1" 200 None 2026-10-04 23:43:37,196 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/562 HTTP/1.1" 200 None 2026-10-04 23:43:38,010 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/563 HTTP/1.1" 200 None 2026-10-04 23:43:38,767 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/559 HTTP/1.1" 200 None 2026-10-04 23:43:39,591 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/558 HTTP/1.1" 200 None 2026-10-04 23:43:40,323 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/557 HTTP/1.1" 200 None 2026-10-04 23:43:41,120 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/541 HTTP/1.1" 200 None 2026-10-04 23:43:41,853 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/556 HTTP/1.1" 200 None 2026-10-04 23:43:42,588 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/554 HTTP/1.1" 200 None 2026-10-04 23:43:43,445 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/553 HTTP/1.1" 200 None 2026-10-04 23:43:44,220 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/552 HTTP/1.1" 200 None 2026-10-04 23:43:44,972 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/551 HTTP/1.1" 200 None 2026-10-04 23:43:45,739 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/550 HTTP/1.1" 200 None 2026-10-04 23:43:46,496 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/549 HTTP/1.1" 200 None 2026-10-04 23:43:47,211 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/548 HTTP/1.1" 200 None 2026-10-04 23:43:47,992 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/547 HTTP/1.1" 200 None 2026-10-04 23:43:48,820 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/540 HTTP/1.1" 200 None 2026-10-04 23:43:49,550 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/539 HTTP/1.1" 200 None 2026-10-04 23:43:50,279 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/537 HTTP/1.1" 200 None 2026-10-04 23:43:51,052 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/535 HTTP/1.1" 200 None 2026-10-04 23:43:51,892 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/527 HTTP/1.1" 200 None 2026-10-04 23:43:52,626 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/534 HTTP/1.1" 200 None 2026-10-04 23:43:53,354 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/533 HTTP/1.1" 200 None 2026-10-04 23:43:54,219 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/530 HTTP/1.1" 200 None 2026-10-04 23:43:55,030 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/528 HTTP/1.1" 200 None 2026-10-04 23:43:55,889 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/529 HTTP/1.1" 200 None 2026-10-04 23:43:56,680 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/526 HTTP/1.1" 200 None 2026-10-04 23:43:57,520 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/525 HTTP/1.1" 200 None 2026-10-04 23:43:58,276 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/524 HTTP/1.1" 200 None 2026-10-04 23:43:58,988 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/523 HTTP/1.1" 200 None 2026-10-04 23:43:59,714 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/522 HTTP/1.1" 200 None 2026-10-04 23:44:00,414 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/521 HTTP/1.1" 200 None 2026-10-04 23:44:01,250 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/520 HTTP/1.1" 200 None 2026-10-04 23:44:01,975 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/519 HTTP/1.1" 200 None 2026-10-04 23:44:02,760 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/518 HTTP/1.1" 200 None 2026-10-04 23:44:03,714 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/514 HTTP/1.1" 200 None 2026-10-04 23:44:04,625 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/513 HTTP/1.1" 200 None 2026-10-04 23:44:05,692 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/512 HTTP/1.1" 200 None 2026-10-04 23:44:06,633 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/465 HTTP/1.1" 200 None 2026-10-04 23:44:07,463 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/517 HTTP/1.1" 200 None 2026-10-04 23:44:08,181 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/516 HTTP/1.1" 200 None 2026-10-04 23:44:09,127 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/510 HTTP/1.1" 200 None 2026-10-04 23:44:09,981 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/506 HTTP/1.1" 200 None 2026-10-04 23:44:10,081 [ scc.git] DEBUG Calling 'git fetch origin pull/471/head' 2026-10-04 23:44:10,824 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-10-04 23:44:10,824 [ scc.git] DEBUG * branch refs/pull/471/head -> FETCH_HEAD 2026-10-04 23:44:10,851 [ scc.git] DEBUG Calling 'git fetch origin pull/532/head' 2026-10-04 23:44:11,410 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-10-04 23:44:11,410 [ scc.git] DEBUG * branch refs/pull/532/head -> FETCH_HEAD 2026-10-04 23:44:11,434 [ scc.git] DEBUG ## Unique users: [] 2026-10-04 23:44:11,434 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:44:11,434 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:44:11,448 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...448d042a58da05a522531356cc58c1e35b5744d9' 2026-10-04 23:44:11,534 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:44:11,546 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 471 (Z projection disabled tooltip) 448d042a58da05a522531356cc58c1e35b5744d9' 2026-10-04 23:44:11,825 [ scc.git] DEBUG Auto-merging src/controls/dimension-slider.js 2026-10-04 23:44:11,894 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-04 23:44:11,963 [ scc.git] DEBUG src/controls/dimension-slider.html | 2 +- 2026-10-04 23:44:11,963 [ scc.git] DEBUG src/controls/dimension-slider.js | 20 ++++++++++++++++++++ 2026-10-04 23:44:11,963 [ scc.git] DEBUG 2 files changed, 21 insertions(+), 1 deletion(-) 2026-10-04 23:44:12,137 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:44:12,138 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...fb88f3a09446141b1d1bc276c87ea6a832ff1b3a' 2026-10-04 23:44:12,242 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:44:12,254 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 532 (Zarr layers) fb88f3a09446141b1d1bc276c87ea6a832ff1b3a' 2026-10-04 23:44:13,153 [ scc.git] DEBUG Auto-merging css/app.css 2026-10-04 23:44:13,153 [ scc.git] DEBUG CONFLICT (content): Merge conflict in css/app.css 2026-10-04 23:44:13,153 [ scc.git] DEBUG Auto-merging package-lock.json 2026-10-04 23:44:13,153 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2026-10-04 23:44:13,153 [ scc.git] DEBUG Auto-merging package.json 2026-10-04 23:44:13,153 [ scc.git] DEBUG Auto-merging src/app/context.js 2026-10-04 23:44:13,153 [ scc.git] DEBUG Auto-merging src/model/image_config.js 2026-10-04 23:44:13,153 [ scc.git] DEBUG Auto-merging src/viewers/viewer/Viewer.js 2026-10-04 23:44:13,153 [ scc.git] DEBUG Auto-merging src/viewers/viewer/source/Image.js 2026-10-04 23:44:13,153 [ scc.git] DEBUG Auto-merging webpack.dev.config.js 2026-10-04 23:44:13,182 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-10-04 23:44:13,186 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-10-04 23:44:13,262 [ scc.git] DEBUG Calling 'git reset --hard 11c80eab5f0b9df7ea6085b4e93af5838d64a6e8' 2026-10-04 23:44:13,722 [ scc.git] DEBUG HEAD is now at 11c80eab merge master -Dorg -Ssuccess-only: PR 471 (Z projection disabled tooltip) 2026-10-04 23:44:13,929 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:44:13,930 [ scc.git] DEBUG Calling 'git merge-base 0a836211ba48a84aff07486e3d18cfe9c5f52e76 fb88f3a09446141b1d1bc276c87ea6a832ff1b3a' 2026-10-04 23:44:14,008 [ scc.git] DEBUG Calling 'git diff --name-only 0b7eaf71f7e3f5c7289fab4bf857094bdadce1e4..0a836211ba48a84aff07486e3d18cfe9c5f52e76' 2026-10-04 23:44:14,047 [ scc.git] INFO - PR 532 will-moore 'Zarr layers' Conflicting PR. Removed from build [OMERO-plugins-push#100](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/100/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/100/consoleText) for more details. Possible conflicts: - Upstream changes - package-lock.json - css/app.css --conflicts 2026-10-04 23:44:14,060 [ scc.config] DEBUG Found github.token 2026-10-04 23:44:14,060 [ scc.git] DEBUG Not adding comment to issue #532, already --conflicts. 2026-10-04 23:44:14,060 [ scc.git] DEBUG Calling 'git submodule update' 2026-10-04 23:44:14,193 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:44:14,193 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:44:14,207 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-04 23:44:14,330 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-10-04 23:44:14,480 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb10ea1d510> has no local changes 2026-10-04 23:44:14,480 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-iviewer Excluded PRs: - PR 420 will-moore 'Add release process to README' (exclude comment) - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment) Updating 7a798cee..0a836211 Previously merged: - PR 574 dependabot[bot] 'Bump minimatch from 3.1.2 to 3.1.5' - PR 573 dependabot[bot] 'Bump serialize-javascript and mocha' - PR 572 dependabot[bot] 'Bump brace-expansion from 1.1.13 to 1.1.21' - PR 571 dependabot[bot] 'Bump fast-uri from 3.1.7 to 3.1.8' - PR 570 dependabot[bot] 'Bump engine.io from 6.6.9 to 6.6.11' - PR 568 dependabot[bot] 'Bump webpack-dev-middleware from 8.1.0 to 8.3.0' - PR 566 dependabot[bot] 'Bump js-yaml from 4.1.0 to 4.3.2' - PR 565 dependabot[bot] 'Bump qs and body-parser' - PR 564 dependabot[bot] 'Bump fast-uri from 3.1.5 to 3.1.7' - PR 567 will-moore 'Basic fix of prev/next shapes when shapes sorted' - PR 562 will-moore 'Keyboard select roi' - PR 563 will-moore 'Use POST data for imgRdef save' - PR 559 dependabot[bot] 'Bump js-yaml and mocha' - PR 558 dependabot[bot] 'Bump fast-uri from 3.1.4 to 3.1.5' - PR 557 dependabot[bot] 'Bump socket.io-parser from 4.2.6 to 4.2.7' - PR 541 will-moore 'Only add channel to tile request string if active' - PR 556 dependabot[bot] 'Bump webpack-dev-server from 5.2.6 to 6.0.0' - PR 554 dependabot[bot] 'Bump http-proxy-middleware from 2.0.9 to 2.0.10' - PR 553 dependabot[bot] 'Bump postcss from 8.5.10 to 8.5.25' - PR 552 dependabot[bot] 'Bump tmp from 0.2.6 to 0.2.7' - PR 551 dependabot[bot] 'Bump body-parser from 1.20.5 to 1.20.6' - PR 550 dependabot[bot] 'Bump webpack-dev-server from 5.2.4 to 5.2.6' - PR 549 dependabot[bot] 'Bump shell-quote from 1.8.4 to 1.10.0' - PR 548 dependabot[bot] 'Bump fast-uri from 3.1.2 to 3.1.4' - PR 547 dependabot[bot] 'Bump websocket-driver from 0.7.4 to 0.7.5' - PR 540 dependabot[bot] 'Bump @babel/core from 7.5.4 to 7.29.6' - PR 539 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter' - PR 537 dependabot[bot] 'Bump launch-editor from 2.13.2 to 2.14.1' - PR 535 dependabot[bot] 'Bump tmp and eslint' - PR 527 PollenGeo 'Add grid overlay feature with configurable cell size and labels' - PR 534 will-moore 'Fix settings.md link to master branch. Move iviewer redirect settings' - PR 533 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter' - PR 530 dependabot[bot] 'Bump webpack-dev-server from 4.13.2 to 5.2.4' - PR 528 dependabot[bot] 'Bump fast-uri from 3.1.0 to 3.1.2' - PR 529 will-moore 'Image id and roi id initial params' - PR 526 will-moore 'Add keyboard handling for Left, Right, Up, Down Arrows to pan' - PR 525 dependabot[bot] 'Bump postcss from 8.4.31 to 8.5.10' - PR 524 dependabot[bot] 'Bump protocol-buffers-schema from 3.3.2 to 3.6.1' - PR 523 dependabot[bot] 'Bump follow-redirects from 1.15.6 to 1.16.0' - PR 522 dependabot[bot] 'Bump lodash from 4.17.21 to 4.18.1' - PR 521 dependabot[bot] 'Bump brace-expansion from 1.1.11 to 1.1.13' - PR 520 dependabot[bot] 'Bump node-forge from 1.3.1 to 1.4.0' - PR 519 dependabot[bot] 'Bump picomatch from 2.3.1 to 2.3.2' - PR 518 dependabot[bot] 'Bump ajv from 6.12.6 to 6.14.0' - PR 514 Tom-TBT 'Fix where interpolate_pixels server config is read from' - PR 513 jburel 'Bump Python version' - PR 512 jburel 'Replace manual changelog by automated GH release step' - PR 465 will-moore 'Save as Figure' - PR 517 will-moore 'Fix roi link permissions' - PR 516 dependabot[bot] 'Bump socket.io-parser from 4.2.4 to 4.2.6' - PR 510 joshmoore 'Re-enable omero-test-infra' - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 471 will-moore 'Z projection disabled tooltip' Conflicting PRs (not included): - PR 532 will-moore 'Zarr layers' Generated by OMERO-plugins-push#100 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/100/)' 2026-10-04 23:44:14,636 [ scc.git] DEBUG [detached HEAD 50eeaaa2] merge master -Dorg -Ssuccess-only 2026-10-04 23:44:14,640 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:44:14,640 [ scc.repo] DEBUG ## PRs found: 2026-10-04 23:44:15,013 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/pulls HTTP/1.1" 200 None 2026-10-04 23:44:15,524 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/98 HTTP/1.1" 200 None 2026-10-04 23:44:16,003 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/98/comments HTTP/1.1" 200 None 2026-10-04 23:44:16,004 [ scc.repo] DEBUG # ... Include label: include 2026-10-04 23:44:16,576 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1fa070ad0afa0f3944fa2513d38db6da1f5bc783?page=1 HTTP/1.1" 200 None 2026-10-04 23:44:17,256 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1fa070ad0afa0f3944fa2513d38db6da1f5bc783/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-04 23:44:17,744 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1fa070ad0afa0f3944fa2513d38db6da1f5bc783?page=1 HTTP/1.1" 200 None 2026-10-04 23:44:18,199 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1fa070ad0afa0f3944fa2513d38db6da1f5bc783?per_page=1 HTTP/1.1" 200 2 2026-10-04 23:44:18,199 [ scc.repo] DEBUG - PR 98 JoshuaFortriede 'use namespace with keys' 2026-10-04 23:44:18,708 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/97 HTTP/1.1" 200 None 2026-10-04 23:44:19,197 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/97/comments HTTP/1.1" 200 None 2026-10-04 23:44:19,198 [ scc.repo] DEBUG # ... Include label: include 2026-10-04 23:44:19,763 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/3854f1cfa0cbe79675dad16ad34fce109524eb28?page=1 HTTP/1.1" 200 None 2026-10-04 23:44:20,261 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/3854f1cfa0cbe79675dad16ad34fce109524eb28/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-04 23:44:20,738 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/3854f1cfa0cbe79675dad16ad34fce109524eb28?page=1 HTTP/1.1" 200 None 2026-10-04 23:44:21,183 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/3854f1cfa0cbe79675dad16ad34fce109524eb28?per_page=1 HTTP/1.1" 200 2 2026-10-04 23:44:21,184 [ scc.repo] DEBUG - PR 97 JoshuaFortriede 'BUG Fix: use HTML value to replace HTML' 2026-10-04 23:44:21,689 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95 HTTP/1.1" 200 None 2026-10-04 23:44:22,181 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95/comments HTTP/1.1" 200 None 2026-10-04 23:44:22,182 [ scc.repo] DEBUG # ... Include label: dependencies 2026-10-04 23:44:22,769 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99?page=1 HTTP/1.1" 200 None 2026-10-04 23:44:23,385 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-04 23:44:23,888 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-10-04 23:44:24,400 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99?page=1 HTTP/1.1" 200 None 2026-10-04 23:44:24,853 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/38cc352a088eaedfaa2dd8874c4f200f98f41a99?per_page=1 HTTP/1.1" 200 2 2026-10-04 23:44:24,854 [ scc.repo] DEBUG - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-10-04 23:44:25,348 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/94 HTTP/1.1" 200 None 2026-10-04 23:44:25,849 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d?page=1 HTTP/1.1" 200 None 2026-10-04 23:44:26,367 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-04 23:44:26,848 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d?page=1 HTTP/1.1" 200 None 2026-10-04 23:44:27,294 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1896cfebc876f939f8d83bd1cf56b8584ff2921d?per_page=1 HTTP/1.1" 200 2 2026-10-04 23:44:27,295 [ scc.repo] DEBUG - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-10-04 23:44:27,795 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None 2026-10-04 23:44:28,301 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None 2026-10-04 23:44:28,302 [ scc.repo] DEBUG ## Branches found: 2026-10-04 23:44:28,302 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr 2026-10-04 23:44:28,303 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:44:28,303 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:44:28,335 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-10-04 23:44:28,355 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-10-04 23:44:28,355 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-10-04 23:44:28,379 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-10-04 23:44:28,436 [ scc.git] DEBUG Already up to date. 2026-10-04 23:44:28,436 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head' 2026-10-04 23:44:28,919 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2026-10-04 23:44:28,919 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD 2026-10-04 23:44:28,947 [ scc.git] DEBUG Calling 'git fetch origin pull/95/head' 2026-10-04 23:44:29,337 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2026-10-04 23:44:29,337 [ scc.git] DEBUG * branch refs/pull/95/head -> FETCH_HEAD 2026-10-04 23:44:29,364 [ scc.git] DEBUG Calling 'git fetch origin pull/97/head' 2026-10-04 23:44:29,872 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2026-10-04 23:44:29,872 [ scc.git] DEBUG * branch refs/pull/97/head -> FETCH_HEAD 2026-10-04 23:44:29,896 [ scc.git] DEBUG Calling 'git fetch origin pull/98/head' 2026-10-04 23:44:30,378 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2026-10-04 23:44:30,378 [ scc.git] DEBUG * branch refs/pull/98/head -> FETCH_HEAD 2026-10-04 23:44:30,403 [ scc.git] DEBUG ## Unique users: [] 2026-10-04 23:44:30,403 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:44:30,403 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:44:30,423 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d' 2026-10-04 23:44:30,455 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:44:30,470 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d' 2026-10-04 23:44:30,697 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-04 23:44:30,767 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-10-04 23:44:30,767 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-10-04 23:44:30,989 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:44:30,990 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38cc352a088eaedfaa2dd8874c4f200f98f41a99' 2026-10-04 23:44:31,026 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:44:31,043 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 95 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 38cc352a088eaedfaa2dd8874c4f200f98f41a99' 2026-10-04 23:44:31,238 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml 2026-10-04 23:44:31,238 [ scc.git] DEBUG CONFLICT (content): Merge conflict in .github/workflows/publish_pypi.yml 2026-10-04 23:44:31,269 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-10-04 23:44:31,271 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-10-04 23:44:31,299 [ scc.git] DEBUG Calling 'git reset --hard 30a4e90ea57a027c5d6189fca495905d8985296d' 2026-10-04 23:44:31,458 [ scc.git] DEBUG HEAD is now at 30a4e90 merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 2026-10-04 23:44:31,635 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:44:31,636 [ scc.git] DEBUG Calling 'git merge-base 0a557da89145e65db313c1721a26cb43e490dd8a 38cc352a088eaedfaa2dd8874c4f200f98f41a99' 2026-10-04 23:44:31,663 [ scc.git] DEBUG Calling 'git diff --name-only 0a557da89145e65db313c1721a26cb43e490dd8a..0a557da89145e65db313c1721a26cb43e490dd8a' 2026-10-04 23:44:31,685 [ scc.git] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Conflicting PR. Removed from build [OMERO-plugins-push#100](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/100/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/100/consoleText) for more details. Possible conflicts: - PR #94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' - .github/workflows/publish_pypi.yml --conflicts 2026-10-04 23:44:31,697 [ scc.config] DEBUG Found github.token 2026-10-04 23:44:31,697 [ scc.git] DEBUG Not adding comment to issue #95, already --conflicts. 2026-10-04 23:44:31,697 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3854f1cfa0cbe79675dad16ad34fce109524eb28' 2026-10-04 23:44:31,735 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:44:31,751 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 97 (BUG Fix: use HTML value to replace HTML) 3854f1cfa0cbe79675dad16ad34fce109524eb28' 2026-10-04 23:44:31,972 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-04 23:44:32,042 [ scc.git] DEBUG .../templates/webclient/data/includes/right_plugin.general.js.html | 4 +++- 2026-10-04 23:44:32,042 [ scc.git] DEBUG 1 file changed, 3 insertions(+), 1 deletion(-) 2026-10-04 23:44:32,222 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:44:32,222 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1fa070ad0afa0f3944fa2513d38db6da1f5bc783' 2026-10-04 23:44:32,268 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:44:32,283 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 98 (use namespace with keys) 1fa070ad0afa0f3944fa2513d38db6da1f5bc783' 2026-10-04 23:44:32,473 [ scc.git] DEBUG Auto-merging omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html 2026-10-04 23:44:32,552 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-04 23:44:32,633 [ scc.git] DEBUG .../webclient/data/includes/right_plugin.general.js.html | 11 ++++++++--- 2026-10-04 23:44:32,633 [ scc.git] DEBUG 1 file changed, 8 insertions(+), 3 deletions(-) 2026-10-04 23:44:32,803 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:44:32,804 [ scc.git] DEBUG Calling 'git submodule update' 2026-10-04 23:44:32,918 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:44:32,918 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:44:32,931 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-04 23:44:33,034 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-10-04 23:44:33,097 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb10e9d91d0> has no local changes 2026-10-04 23:44:33,097 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-mapr Excluded PRs: - PR 79 will-moore 'Right panel title' (exclude comment) - PR 74 will-moore 'mapr extension of webclient' (exclude comment) Already up to date. Merged PRs: - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' - PR 97 JoshuaFortriede 'BUG Fix: use HTML value to replace HTML' - PR 98 JoshuaFortriede 'use namespace with keys' Conflicting PRs (not included): - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#100 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/100/)' 2026-10-04 23:44:33,237 [ scc.git] DEBUG [detached HEAD 0a84855] merge master -Dorg -Ssuccess-only 2026-10-04 23:44:33,239 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:44:33,239 [ scc.repo] DEBUG ## PRs found: 2026-10-04 23:44:33,577 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None 2026-10-04 23:44:34,073 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/92 HTTP/1.1" 200 None 2026-10-04 23:44:34,551 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/92/comments HTTP/1.1" 200 None 2026-10-04 23:44:35,135 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f?page=1 HTTP/1.1" 200 None 2026-10-04 23:44:35,623 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-04 23:44:36,086 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f?page=1 HTTP/1.1" 200 None 2026-10-04 23:44:36,552 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/64d33da6022f537d572d4f69a5cec86377b6e78f?per_page=1 HTTP/1.1" 200 2 2026-10-04 23:44:36,552 [ scc.repo] DEBUG - PR 92 dominikl 'add resolve_rois to projectwrapper' 2026-10-04 23:44:37,050 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None 2026-10-04 23:44:37,558 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None 2026-10-04 23:44:38,161 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7?page=1 HTTP/1.1" 200 None 2026-10-04 23:44:38,697 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-04 23:44:39,230 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7?page=1 HTTP/1.1" 200 None 2026-10-04 23:44:39,680 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2 2026-10-04 23:44:39,680 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate' 2026-10-04 23:44:39,680 [ scc.repo] DEBUG ## Branches found: 2026-10-04 23:44:39,680 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata 2026-10-04 23:44:39,681 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:44:39,681 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:44:39,700 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-10-04 23:44:39,721 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-10-04 23:44:39,721 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-10-04 23:44:39,854 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-10-04 23:44:40,140 [ scc.git] DEBUG Updating 3cd120c..6a653e4 2026-10-04 23:44:40,823 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/95 HTTP/1.1" 200 None 2026-10-04 23:44:41,627 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/94 HTTP/1.1" 200 None 2026-10-04 23:44:42,391 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None 2026-10-04 23:44:42,392 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head' 2026-10-04 23:44:43,124 [ scc.git] DEBUG From https://github.com/ome/omero-metadata 2026-10-04 23:44:43,124 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD 2026-10-04 23:44:43,151 [ scc.git] DEBUG Calling 'git fetch origin pull/92/head' 2026-10-04 23:44:43,635 [ scc.git] DEBUG From https://github.com/ome/omero-metadata 2026-10-04 23:44:43,635 [ scc.git] DEBUG * branch refs/pull/92/head -> FETCH_HEAD 2026-10-04 23:44:43,663 [ scc.git] DEBUG ## Unique users: [] 2026-10-04 23:44:43,663 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:44:43,663 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:44:43,677 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7' 2026-10-04 23:44:43,743 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:44:43,759 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7' 2026-10-04 23:44:44,025 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py 2026-10-04 23:44:44,025 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py 2026-10-04 23:44:44,025 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py 2026-10-04 23:44:44,047 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-10-04 23:44:44,048 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-10-04 23:44:44,077 [ scc.git] DEBUG Calling 'git reset --hard 6a653e49e3589ccb463166506896639f6f0a5a2b' 2026-10-04 23:44:44,222 [ scc.git] DEBUG HEAD is now at 6a653e4 Fix workflow permission indentation 2026-10-04 23:44:44,400 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:44:44,400 [ scc.git] DEBUG Calling 'git merge-base 6a653e49e3589ccb463166506896639f6f0a5a2b 78e55539b68e351ed5ef202854718b49a37729a7' 2026-10-04 23:44:44,452 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..6a653e49e3589ccb463166506896639f6f0a5a2b' 2026-10-04 23:44:44,480 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate' Conflicting PR. Removed from build [OMERO-plugins-push#100](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/100/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/100/consoleText) for more details. Possible conflicts: - Upstream changes - src/omero_metadata/populate.py --conflicts 2026-10-04 23:44:44,492 [ scc.config] DEBUG Found github.token 2026-10-04 23:44:44,493 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts. 2026-10-04 23:44:44,493 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...64d33da6022f537d572d4f69a5cec86377b6e78f' 2026-10-04 23:44:44,538 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:44:44,552 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 92 (add resolve_rois to projectwrapper) 64d33da6022f537d572d4f69a5cec86377b6e78f' 2026-10-04 23:44:44,774 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-04 23:44:44,836 [ scc.git] DEBUG src/omero_metadata/populate.py | 55 +++++++++++++++++++++++++++++++++++++++++- 2026-10-04 23:44:44,836 [ scc.git] DEBUG 1 file changed, 54 insertions(+), 1 deletion(-) 2026-10-04 23:44:45,015 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:44:45,015 [ scc.git] DEBUG Calling 'git submodule update' 2026-10-04 23:44:45,144 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:44:45,144 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:44:45,159 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-04 23:44:45,276 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-10-04 23:44:45,342 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb10ea09b50> has no local changes 2026-10-04 23:44:45,342 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-metadata Updating 3cd120c..6a653e4 Previously merged: - PR 95 sbesson 'Remove manual CHANGELOG in favor of automated GitHub releases' - PR 94 sbesson 'Cap pandas to 2.x and clean up unused dependencies' - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 92 dominikl 'add resolve_rois to projectwrapper' Conflicting PRs (not included): - PR 64 will-moore 'Support images_by_name for Screen and Plate' Generated by OMERO-plugins-push#100 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/100/)' 2026-10-04 23:44:45,483 [ scc.git] DEBUG [detached HEAD 469e699] merge master -Dorg -Ssuccess-only 2026-10-04 23:44:45,484 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:44:45,484 [ scc.repo] DEBUG ## PRs found: 2026-10-04 23:44:45,829 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None 2026-10-04 23:44:46,425 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None 2026-10-04 23:44:47,047 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0?page=1 HTTP/1.1" 200 None 2026-10-04 23:44:47,616 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-04 23:44:48,076 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0?page=1 HTTP/1.1" 200 None 2026-10-04 23:44:48,524 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2 2026-10-04 23:44:48,525 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-10-04 23:44:49,041 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None 2026-10-04 23:44:49,042 [ scc.repo] DEBUG # ... Include label: dependencies 2026-10-04 23:44:49,622 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80?page=1 HTTP/1.1" 200 None 2026-10-04 23:44:50,168 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-04 23:44:50,659 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80?page=1 HTTP/1.1" 200 None 2026-10-04 23:44:51,107 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2 2026-10-04 23:44:51,107 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' 2026-10-04 23:44:51,593 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None 2026-10-04 23:44:51,594 [ scc.repo] DEBUG # ... Include label: dependencies 2026-10-04 23:44:52,224 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0?page=1 HTTP/1.1" 200 None 2026-10-04 23:44:52,726 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-04 23:44:53,235 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0?page=1 HTTP/1.1" 200 None 2026-10-04 23:44:53,683 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2 2026-10-04 23:44:53,683 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' 2026-10-04 23:44:54,161 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None 2026-10-04 23:44:54,654 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None 2026-10-04 23:44:55,132 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None 2026-10-04 23:44:55,631 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None 2026-10-04 23:44:56,160 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None 2026-10-04 23:44:56,650 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None 2026-10-04 23:44:57,139 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None 2026-10-04 23:44:57,141 [ scc.repo] DEBUG ## Branches found: 2026-10-04 23:44:57,141 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade 2026-10-04 23:44:57,142 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:44:57,143 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:44:57,164 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-10-04 23:44:57,183 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-10-04 23:44:57,183 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-10-04 23:44:57,210 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-10-04 23:44:57,275 [ scc.git] DEBUG Already up to date. 2026-10-04 23:44:57,275 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head' 2026-10-04 23:44:57,700 [ scc.git] DEBUG From https://github.com/ome/omero-parade 2026-10-04 23:44:57,700 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD 2026-10-04 23:44:57,728 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head' 2026-10-04 23:44:58,105 [ scc.git] DEBUG From https://github.com/ome/omero-parade 2026-10-04 23:44:58,105 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD 2026-10-04 23:44:58,137 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head' 2026-10-04 23:44:58,577 [ scc.git] DEBUG From https://github.com/ome/omero-parade 2026-10-04 23:44:58,577 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD 2026-10-04 23:44:58,603 [ scc.git] DEBUG ## Unique users: [] 2026-10-04 23:44:58,603 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:44:58,603 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:44:58,618 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0' 2026-10-04 23:44:58,642 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:44:58,655 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0' 2026-10-04 23:44:58,889 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-04 23:44:58,951 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++---------------------------- 2026-10-04 23:44:58,951 [ scc.git] DEBUG package.json | 2 +- 2026-10-04 23:44:58,951 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-) 2026-10-04 23:44:59,125 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:44:59,125 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80' 2026-10-04 23:44:59,152 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:44:59,164 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80' 2026-10-04 23:44:59,347 [ scc.git] DEBUG Auto-merging package-lock.json 2026-10-04 23:44:59,347 [ scc.git] DEBUG Auto-merging package.json 2026-10-04 23:44:59,438 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-04 23:44:59,506 [ scc.git] DEBUG package-lock.json | 18 ++++++++++-------- 2026-10-04 23:44:59,506 [ scc.git] DEBUG package.json | 2 +- 2026-10-04 23:44:59,506 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-) 2026-10-04 23:44:59,709 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:44:59,710 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0' 2026-10-04 23:44:59,757 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:44:59,773 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0' 2026-10-04 23:45:00,007 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-04 23:45:00,078 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-10-04 23:45:00,080 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-10-04 23:45:00,254 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:45:00,255 [ scc.git] DEBUG Calling 'git submodule update' 2026-10-04 23:45:00,374 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:45:00,375 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:45:00,387 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-04 23:45:00,494 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-10-04 23:45:00,562 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb10ea03890> has no local changes 2026-10-04 23:45:00,562 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-parade Excluded PRs: - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft) - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment) - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment) - PR 39 chris-allan 'Expand all for Screens' (exclude comment) Already up to date. Merged PRs: - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Generated by OMERO-plugins-push#100 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/100/)' 2026-10-04 23:45:00,703 [ scc.git] DEBUG [detached HEAD e59e2b2] merge master -Dorg -Ssuccess-only 2026-10-04 23:45:00,706 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:45:00,706 [ scc.repo] DEBUG ## PRs found: 2026-10-04 23:45:01,214 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None 2026-10-04 23:45:02,037 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/16 HTTP/1.1" 200 None 2026-10-04 23:45:02,038 [ scc.repo] DEBUG # ... Include label: dependencies 2026-10-04 23:45:02,596 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e?page=1 HTTP/1.1" 200 None 2026-10-04 23:45:03,139 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-04 23:45:03,731 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-10-04 23:45:04,213 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e?page=1 HTTP/1.1" 200 None 2026-10-04 23:45:04,658 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/5381b9f25e1666d81d236039a1317276291e9b2e?per_page=1 HTTP/1.1" 200 2 2026-10-04 23:45:04,659 [ scc.repo] DEBUG - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-10-04 23:45:04,659 [ scc.repo] DEBUG ## Branches found: 2026-10-04 23:45:04,659 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools 2026-10-04 23:45:04,660 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:45:04,661 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:45:04,681 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-10-04 23:45:04,699 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-10-04 23:45:04,699 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-10-04 23:45:04,721 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-10-04 23:45:04,782 [ scc.git] DEBUG Already up to date. 2026-10-04 23:45:04,782 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head' 2026-10-04 23:45:05,203 [ scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools 2026-10-04 23:45:05,203 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD 2026-10-04 23:45:05,230 [ scc.git] DEBUG ## Unique users: [] 2026-10-04 23:45:05,230 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:45:05,230 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:45:05,244 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5381b9f25e1666d81d236039a1317276291e9b2e' 2026-10-04 23:45:05,265 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:45:05,279 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 5381b9f25e1666d81d236039a1317276291e9b2e' 2026-10-04 23:45:05,472 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-04 23:45:05,557 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-10-04 23:45:05,557 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-10-04 23:45:05,750 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:45:05,751 [ scc.git] DEBUG Calling 'git submodule update' 2026-10-04 23:45:05,886 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:45:05,887 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:45:05,901 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-04 23:45:06,028 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-10-04 23:45:06,078 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb10ea495d0> has no local changes 2026-10-04 23:45:06,078 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-prometheus-tools Already up to date. Merged PRs: - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#100 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/100/)' 2026-10-04 23:45:06,242 [ scc.git] DEBUG [detached HEAD c637d76] merge master -Dorg -Ssuccess-only 2026-10-04 23:45:06,244 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:45:06,244 [ scc.repo] DEBUG ## PRs found: 2026-10-04 23:45:06,534 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None 2026-10-04 23:45:07,056 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None 2026-10-04 23:45:07,056 [ scc.repo] DEBUG ## Branches found: 2026-10-04 23:45:07,057 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois 2026-10-04 23:45:07,058 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:45:07,058 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:45:07,080 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-10-04 23:45:07,101 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-10-04 23:45:07,101 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-10-04 23:45:07,196 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-10-04 23:45:07,452 [ scc.git] DEBUG Updating bdfeb5e..fc9ff96 2026-10-04 23:45:08,747 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls/36 HTTP/1.1" 200 None 2026-10-04 23:45:09,802 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls/35 HTTP/1.1" 200 None 2026-10-04 23:45:09,803 [ scc.git] DEBUG ## Unique users: [] 2026-10-04 23:45:09,803 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:45:09,803 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:45:09,823 [ scc.git] DEBUG Calling 'git submodule update' 2026-10-04 23:45:09,956 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:45:09,956 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:45:09,972 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-04 23:45:10,095 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-10-04 23:45:10,173 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb10fc4c410> has no local changes 2026-10-04 23:45:10,173 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-rois Excluded PRs: - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) Updating bdfeb5e..fc9ff96 Previously merged: - PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml' - PR 35 will-moore 'Add roi to array functions' Generated by OMERO-plugins-push#100 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/100/)' 2026-10-04 23:45:10,326 [ scc.git] DEBUG [detached HEAD f322e20] merge master -Dorg -Ssuccess-only 2026-10-04 23:45:10,328 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:45:10,328 [ scc.repo] DEBUG ## PRs found: 2026-10-04 23:45:10,732 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None 2026-10-04 23:45:11,344 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/22 HTTP/1.1" 200 None 2026-10-04 23:45:11,345 [ scc.repo] DEBUG # ... Include label: dependencies 2026-10-04 23:45:12,014 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa?page=1 HTTP/1.1" 200 None 2026-10-04 23:45:12,585 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-04 23:45:13,142 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-10-04 23:45:13,621 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa?page=1 HTTP/1.1" 200 None 2026-10-04 23:45:14,074 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/8b27e47a330555e99e9594f0c4b546946f4f98aa?per_page=1 HTTP/1.1" 200 2 2026-10-04 23:45:14,075 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-10-04 23:45:14,570 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None 2026-10-04 23:45:15,064 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None 2026-10-04 23:45:15,662 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?page=1 HTTP/1.1" 200 None 2026-10-04 23:45:16,161 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-04 23:45:16,651 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?page=1 HTTP/1.1" 200 None 2026-10-04 23:45:17,153 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2 2026-10-04 23:45:17,154 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)' 2026-10-04 23:45:17,154 [ scc.repo] DEBUG ## Branches found: 2026-10-04 23:45:17,154 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup 2026-10-04 23:45:17,155 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:45:17,155 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:45:17,178 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-10-04 23:45:17,199 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-10-04 23:45:17,199 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-10-04 23:45:17,222 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-10-04 23:45:17,282 [ scc.git] DEBUG Already up to date. 2026-10-04 23:45:17,282 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head' 2026-10-04 23:45:17,892 [ scc.git] DEBUG From https://github.com/ome/omero-signup 2026-10-04 23:45:17,892 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD 2026-10-04 23:45:17,919 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head' 2026-10-04 23:45:18,326 [ scc.git] DEBUG From https://github.com/ome/omero-signup 2026-10-04 23:45:18,327 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD 2026-10-04 23:45:18,353 [ scc.git] DEBUG ## Unique users: [] 2026-10-04 23:45:18,353 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:45:18,354 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:45:18,370 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d' 2026-10-04 23:45:18,405 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:45:18,419 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d' 2026-10-04 23:45:18,738 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py 2026-10-04 23:45:18,738 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py 2026-10-04 23:45:18,738 [ scc.git] DEBUG Auto-merging omero_signup/urls.py 2026-10-04 23:45:18,738 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py 2026-10-04 23:45:18,738 [ scc.git] DEBUG Auto-merging omero_signup/views.py 2026-10-04 23:45:18,738 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py 2026-10-04 23:45:18,738 [ scc.git] DEBUG Auto-merging setup.py 2026-10-04 23:45:18,738 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py 2026-10-04 23:45:18,763 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-10-04 23:45:18,765 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-10-04 23:45:18,805 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e' 2026-10-04 23:45:18,990 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build 2026-10-04 23:45:19,174 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:45:19,174 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d' 2026-10-04 23:45:19,203 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e' 2026-10-04 23:45:19,225 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)' Conflicting PR. Removed from build [OMERO-plugins-push#100](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/100/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/100/consoleText) for more details. Possible conflicts: - Upstream changes - omero_signup/signup_settings.py - omero_signup/urls.py - omero_signup/views.py - setup.py --conflicts 2026-10-04 23:45:19,238 [ scc.config] DEBUG Found github.token 2026-10-04 23:45:19,238 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts. 2026-10-04 23:45:19,238 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8b27e47a330555e99e9594f0c4b546946f4f98aa' 2026-10-04 23:45:19,260 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:45:19,275 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8b27e47a330555e99e9594f0c4b546946f4f98aa' 2026-10-04 23:45:19,468 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-04 23:45:19,528 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-10-04 23:45:19,528 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-10-04 23:45:19,728 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:45:19,728 [ scc.git] DEBUG Calling 'git submodule update' 2026-10-04 23:45:19,861 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:45:19,861 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:45:19,876 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-04 23:45:20,000 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-10-04 23:45:20,060 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb10ea56ed0> has no local changes 2026-10-04 23:45:20,060 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-signup Already up to date. Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Conflicting PRs (not included): - PR 14 manics 'Add pre-commit (black, flake8)' Generated by OMERO-plugins-push#100 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/100/)' 2026-10-04 23:45:20,195 [ scc.git] DEBUG [detached HEAD e79e16a] merge master -Dorg -Ssuccess-only 2026-10-04 23:45:20,197 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:45:20,197 [ scc.repo] DEBUG ## PRs found: 2026-10-04 23:45:20,534 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None 2026-10-04 23:45:21,074 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None 2026-10-04 23:45:21,588 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None 2026-10-04 23:45:22,107 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74/comments HTTP/1.1" 200 None 2026-10-04 23:45:22,708 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623?page=1 HTTP/1.1" 200 None 2026-10-04 23:45:23,241 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-04 23:45:23,725 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623?page=1 HTTP/1.1" 200 None 2026-10-04 23:45:24,174 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/c18c080227e97899382d3464baa7c7885a621623?per_page=1 HTTP/1.1" 200 2 2026-10-04 23:45:24,174 [ scc.repo] DEBUG - PR 74 joshmoore 'Add 'ms' target for ./docker' 2026-10-04 23:45:24,175 [ scc.repo] DEBUG ## Branches found: 2026-10-04 23:45:24,175 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra 2026-10-04 23:45:24,176 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:45:24,176 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:45:24,197 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-10-04 23:45:24,216 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-10-04 23:45:24,216 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-10-04 23:45:24,240 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-10-04 23:45:24,408 [ scc.git] DEBUG Updating cda3ec6..c8a0015 2026-10-04 23:45:25,021 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/84 HTTP/1.1" 200 None 2026-10-04 23:45:25,874 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/82 HTTP/1.1" 200 None 2026-10-04 23:45:26,670 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/81 HTTP/1.1" 200 None 2026-10-04 23:45:26,671 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head' 2026-10-04 23:45:27,180 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra 2026-10-04 23:45:27,180 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD 2026-10-04 23:45:27,208 [ scc.git] DEBUG ## Unique users: [] 2026-10-04 23:45:27,208 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:45:27,208 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:45:27,225 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c18c080227e97899382d3464baa7c7885a621623' 2026-10-04 23:45:27,260 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:45:27,276 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (Add 'ms' target for ./docker) c18c080227e97899382d3464baa7c7885a621623' 2026-10-04 23:45:27,479 [ scc.git] DEBUG Auto-merging .github/workflows/main.yml 2026-10-04 23:45:27,544 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-04 23:45:27,619 [ scc.git] DEBUG .github/workflows/main.yml | 8 ++++++++ 2026-10-04 23:45:27,619 [ scc.git] DEBUG docker | 22 ++++++++++++++++++++++ 2026-10-04 23:45:27,619 [ scc.git] DEBUG ms/compose.yml | 11 +++++++++++ 2026-10-04 23:45:27,619 [ scc.git] DEBUG ms/example/Dockerfile | 13 +++++++++++++ 2026-10-04 23:45:27,619 [ scc.git] DEBUG ms/test | 2 ++ 2026-10-04 23:45:27,619 [ scc.git] DEBUG 5 files changed, 56 insertions(+) 2026-10-04 23:45:27,619 [ scc.git] DEBUG create mode 100644 ms/compose.yml 2026-10-04 23:45:27,619 [ scc.git] DEBUG create mode 100644 ms/example/Dockerfile 2026-10-04 23:45:27,619 [ scc.git] DEBUG create mode 100755 ms/test 2026-10-04 23:45:27,808 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:45:27,809 [ scc.git] DEBUG Calling 'git submodule update' 2026-10-04 23:45:27,941 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:45:27,941 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:45:27,955 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-04 23:45:28,077 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-10-04 23:45:28,155 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb10fc4e750> has no local changes 2026-10-04 23:45:28,155 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: openmicroscopy/omero-test-infra Excluded PRs: - PR 75 marimeireles 'Microservices' (user: marimeireles) Updating cda3ec6..c8a0015 Previously merged: - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT' - PR 82 jburel 'Upgrade python' - PR 81 erickmartins 'add ulimits to omero-server container' Merged PRs: - PR 74 joshmoore 'Add 'ms' target for ./docker' Generated by OMERO-plugins-push#100 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/100/)' 2026-10-04 23:45:28,295 [ scc.git] DEBUG [detached HEAD effe34d] merge master -Dorg -Ssuccess-only 2026-10-04 23:45:28,296 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:45:28,296 [ scc.repo] DEBUG ## PRs found: 2026-10-04 23:45:28,588 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 None 2026-10-04 23:45:29,084 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/issues/14 HTTP/1.1" 200 None 2026-10-04 23:45:29,084 [ scc.repo] DEBUG # ... Include label: dependencies 2026-10-04 23:45:29,643 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?page=1 HTTP/1.1" 200 None 2026-10-04 23:45:30,205 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-04 23:45:30,745 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-10-04 23:45:31,239 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?page=1 HTTP/1.1" 200 None 2026-10-04 23:45:31,676 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/statuses/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?per_page=1 HTTP/1.1" 200 2 2026-10-04 23:45:31,676 [ scc.repo] DEBUG - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-10-04 23:45:31,676 [ scc.repo] DEBUG ## Branches found: 2026-10-04 23:45:31,676 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload 2026-10-04 23:45:31,677 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:45:31,677 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:45:31,696 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-10-04 23:45:31,717 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-10-04 23:45:31,717 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-10-04 23:45:31,736 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-10-04 23:45:31,793 [ scc.git] DEBUG Already up to date. 2026-10-04 23:45:31,793 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head' 2026-10-04 23:45:32,203 [ scc.git] DEBUG From https://github.com/ome/omero-upload 2026-10-04 23:45:32,203 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD 2026-10-04 23:45:32,227 [ scc.git] DEBUG ## Unique users: [] 2026-10-04 23:45:32,227 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:45:32,227 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:45:32,241 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1a4dbe9a31854f4f65c509ea929debf3319ba1ea' 2026-10-04 23:45:32,263 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:45:32,278 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 1a4dbe9a31854f4f65c509ea929debf3319ba1ea' 2026-10-04 23:45:32,488 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-04 23:45:32,547 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-10-04 23:45:32,547 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-10-04 23:45:32,734 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:45:32,735 [ scc.git] DEBUG Calling 'git submodule update' 2026-10-04 23:45:32,845 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:45:32,845 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:45:32,863 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-04 23:45:32,968 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-10-04 23:45:33,019 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb10faf26d0> has no local changes 2026-10-04 23:45:33,019 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-upload Already up to date. Merged PRs: - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#100 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/100/)' 2026-10-04 23:45:33,154 [ scc.git] DEBUG [detached HEAD 49c0b8d] merge master -Dorg -Ssuccess-only 2026-10-04 23:45:33,157 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:45:33,157 [ scc.repo] DEBUG ## PRs found: 2026-10-04 23:45:33,418 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 None 2026-10-04 23:45:33,929 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/issues/22 HTTP/1.1" 200 None 2026-10-04 23:45:33,930 [ scc.repo] DEBUG # ... Include label: dependencies 2026-10-04 23:45:34,553 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902?page=1 HTTP/1.1" 200 None 2026-10-04 23:45:35,076 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-04 23:45:35,682 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-10-04 23:45:36,205 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902?page=1 HTTP/1.1" 200 None 2026-10-04 23:45:36,647 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/statuses/2ee819462af52bf2878fadf06d6ebdbafb8f1902?per_page=1 HTTP/1.1" 200 2 2026-10-04 23:45:36,648 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-10-04 23:45:36,648 [ scc.repo] DEBUG ## Branches found: 2026-10-04 23:45:36,648 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope 2026-10-04 23:45:36,649 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:45:36,649 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:45:36,670 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-10-04 23:45:36,691 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-10-04 23:45:36,691 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-10-04 23:45:36,733 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-10-04 23:45:36,904 [ scc.git] DEBUG Updating deab817..160d894 2026-10-04 23:45:37,568 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None 2026-10-04 23:45:37,569 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head' 2026-10-04 23:45:37,991 [ scc.git] DEBUG From https://github.com/ome/omero-virtual-microscope 2026-10-04 23:45:37,992 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD 2026-10-04 23:45:38,018 [ scc.git] DEBUG ## Unique users: [] 2026-10-04 23:45:38,018 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:45:38,018 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:45:38,033 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee819462af52bf2878fadf06d6ebdbafb8f1902' 2026-10-04 23:45:38,053 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:45:38,066 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 2ee819462af52bf2878fadf06d6ebdbafb8f1902' 2026-10-04 23:45:38,231 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-04 23:45:38,291 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-10-04 23:45:38,291 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-10-04 23:45:38,479 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:45:38,480 [ scc.git] DEBUG Calling 'git submodule update' 2026-10-04 23:45:38,600 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:45:38,600 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:45:38,613 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-04 23:45:38,721 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-10-04 23:45:38,767 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb10c066210> has no local changes 2026-10-04 23:45:38,767 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-virtual-microscope Updating deab817..160d894 Previously merged: - PR 20 jburel 'Build' Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#100 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/100/)' 2026-10-04 23:45:38,888 [ scc.git] DEBUG [detached HEAD 59f4e2a] merge master -Dorg -Ssuccess-only 2026-10-04 23:45:38,890 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:45:38,890 [ scc.git] INFO Overriding base-branch from master to main 2026-10-04 23:45:38,890 [ scc.repo] DEBUG ## PRs found: 2026-10-04 23:45:39,254 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None 2026-10-04 23:45:40,228 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None 2026-10-04 23:45:40,713 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21/comments HTTP/1.1" 200 None 2026-10-04 23:45:41,327 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc?page=1 HTTP/1.1" 200 None 2026-10-04 23:45:41,925 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-04 23:45:42,430 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-10-04 23:45:42,893 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc?page=1 HTTP/1.1" 200 None 2026-10-04 23:45:43,351 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/d07067753650282c9e8cdbbeae37897b7ed0d4cc?per_page=1 HTTP/1.1" 200 2 2026-10-04 23:45:43,351 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import' 2026-10-04 23:45:43,850 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None 2026-10-04 23:45:44,355 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None 2026-10-04 23:45:44,837 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None 2026-10-04 23:45:45,375 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8?page=1 HTTP/1.1" 200 None 2026-10-04 23:45:45,850 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-04 23:45:46,309 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8?page=1 HTTP/1.1" 200 None 2026-10-04 23:45:46,766 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2 2026-10-04 23:45:46,767 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' 2026-10-04 23:45:46,767 [ scc.repo] DEBUG ## Branches found: 2026-10-04 23:45:46,767 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr 2026-10-04 23:45:46,768 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:45:46,768 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:45:46,788 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main' 2026-10-04 23:45:46,808 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-10-04 23:45:46,808 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main' 2026-10-04 23:45:46,829 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main' 2026-10-04 23:45:46,980 [ scc.git] DEBUG Updating 8f3c313..4e1e685 2026-10-04 23:45:47,603 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/23 HTTP/1.1" 200 None 2026-10-04 23:45:48,514 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/20 HTTP/1.1" 200 None 2026-10-04 23:45:48,515 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head' 2026-10-04 23:45:49,040 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr 2026-10-04 23:45:49,040 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD 2026-10-04 23:45:49,066 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head' 2026-10-04 23:45:49,803 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr 2026-10-04 23:45:49,803 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD 2026-10-04 23:45:49,829 [ scc.git] DEBUG ## Unique users: [] 2026-10-04 23:45:49,829 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:45:49,829 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:45:49,844 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8' 2026-10-04 23:45:49,880 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:45:49,894 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8' 2026-10-04 23:45:50,089 [ scc.git] DEBUG Auto-merging README.rst 2026-10-04 23:45:50,089 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py 2026-10-04 23:45:50,089 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py 2026-10-04 23:45:50,089 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py 2026-10-04 23:45:50,110 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-10-04 23:45:50,111 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-10-04 23:45:50,145 [ scc.git] DEBUG Calling 'git reset --hard 4e1e685dff22136abfd2626f6fd6eaf985aba368' 2026-10-04 23:45:50,303 [ scc.git] DEBUG HEAD is now at 4e1e685 Merge pull request #23 from lubianat/patch-1 2026-10-04 23:45:50,483 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:45:50,484 [ scc.git] DEBUG Calling 'git merge-base 4e1e685dff22136abfd2626f6fd6eaf985aba368 85cf4c893f393da6763bf4cee2a308832a41a9e8' 2026-10-04 23:45:50,510 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..4e1e685dff22136abfd2626f6fd6eaf985aba368' 2026-10-04 23:45:50,536 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' Conflicting PR. Removed from build [OMERO-plugins-push#100](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/100/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/100/consoleText) for more details. Possible conflicts: - Upstream changes - omero_web_zarr/urls.py --conflicts 2026-10-04 23:45:50,549 [ scc.config] DEBUG Found github.token 2026-10-04 23:45:50,549 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts. 2026-10-04 23:45:50,549 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d07067753650282c9e8cdbbeae37897b7ed0d4cc' 2026-10-04 23:45:50,595 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:45:50,609 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) d07067753650282c9e8cdbbeae37897b7ed0d4cc' 2026-10-04 23:45:50,836 [ scc.git] DEBUG Auto-merging README.rst 2026-10-04 23:45:50,836 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py 2026-10-04 23:45:50,906 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-04 23:45:50,985 [ scc.git] DEBUG README.rst | 3 + 2026-10-04 23:45:50,985 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++ 2026-10-04 23:45:50,985 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 + 2026-10-04 23:45:50,985 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++- 2026-10-04 23:45:50,986 [ scc.git] DEBUG setup.py | 5 +- 2026-10-04 23:45:50,986 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-) 2026-10-04 23:45:50,986 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html 2026-10-04 23:45:51,191 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:45:51,191 [ scc.git] DEBUG Calling 'git submodule update' 2026-10-04 23:45:51,329 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:45:51,329 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:45:51,346 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-04 23:45:51,481 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-10-04 23:45:51,558 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb10eaad590> has no local changes 2026-10-04 23:45:51,558 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-web-zarr Excluded PRs: - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft) Updating 8f3c313..4e1e685 Previously merged: - PR 23 lubianat 'Fix mix of .rst and .md on README' - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints' Merged PRs: - PR 21 will-moore 'Web zarr import' Conflicting PRs (not included): - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' Generated by OMERO-plugins-push#100 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/100/)' 2026-10-04 23:45:51,701 [ scc.git] DEBUG [detached HEAD 73d1637] merge master -Dorg -Ssuccess-only 2026-10-04 23:45:51,702 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:45:51,703 [ scc.repo] DEBUG ## PRs found: 2026-10-04 23:45:52,003 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 None 2026-10-04 23:45:52,509 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/issues/25 HTTP/1.1" 200 None 2026-10-04 23:45:52,509 [ scc.repo] DEBUG # ... Include label: dependencies 2026-10-04 23:45:53,098 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9?page=1 HTTP/1.1" 200 None 2026-10-04 23:45:53,663 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-04 23:45:54,196 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-10-04 23:45:54,685 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9?page=1 HTTP/1.1" 200 None 2026-10-04 23:45:55,161 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/statuses/c73bedb717b9ecce0af666245d3486aa5a2dafe9?per_page=1 HTTP/1.1" 200 2 2026-10-04 23:45:55,162 [ scc.repo] DEBUG - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-10-04 23:45:55,162 [ scc.repo] DEBUG ## Branches found: 2026-10-04 23:45:55,162 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror 2026-10-04 23:45:55,163 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:45:55,163 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:45:55,185 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-10-04 23:45:55,208 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-10-04 23:45:55,208 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-10-04 23:45:55,232 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-10-04 23:45:55,290 [ scc.git] DEBUG Already up to date. 2026-10-04 23:45:55,290 [ scc.git] DEBUG Calling 'git fetch origin pull/25/head' 2026-10-04 23:45:55,717 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-weberror 2026-10-04 23:45:55,717 [ scc.git] DEBUG * branch refs/pull/25/head -> FETCH_HEAD 2026-10-04 23:45:55,747 [ scc.git] DEBUG ## Unique users: [] 2026-10-04 23:45:55,747 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:45:55,747 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:45:55,764 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c73bedb717b9ecce0af666245d3486aa5a2dafe9' 2026-10-04 23:45:55,787 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:45:55,801 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) c73bedb717b9ecce0af666245d3486aa5a2dafe9' 2026-10-04 23:45:55,987 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-04 23:45:56,071 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-10-04 23:45:56,071 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-10-04 23:45:56,251 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:45:56,252 [ scc.git] DEBUG Calling 'git submodule update' 2026-10-04 23:45:56,367 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:45:56,368 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:45:56,381 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-04 23:45:56,491 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-10-04 23:45:56,542 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb10ea44710> has no local changes 2026-10-04 23:45:56,542 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: openmicroscopy/omero-weberror Already up to date. Merged PRs: - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#100 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/100/)' 2026-10-04 23:45:56,665 [ scc.git] DEBUG [detached HEAD 25e7617] merge master -Dorg -Ssuccess-only 2026-10-04 23:45:56,667 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:45:56,667 [ scc.repo] DEBUG ## PRs found: 2026-10-04 23:45:56,948 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 None 2026-10-04 23:45:57,457 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/issues/37 HTTP/1.1" 200 None 2026-10-04 23:45:57,457 [ scc.repo] DEBUG # ... Include label: dependencies 2026-10-04 23:45:58,106 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478?page=1 HTTP/1.1" 200 None 2026-10-04 23:45:58,706 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-04 23:45:59,447 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-10-04 23:45:59,936 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478?page=1 HTTP/1.1" 200 None 2026-10-04 23:46:00,402 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/statuses/8cf5f7e65ae8e945b134e41e77bc13a785aff478?per_page=1 HTTP/1.1" 200 2 2026-10-04 23:46:00,402 [ scc.repo] DEBUG - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-10-04 23:46:00,403 [ scc.repo] DEBUG ## Branches found: 2026-10-04 23:46:00,403 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest 2026-10-04 23:46:00,404 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:46:00,404 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:46:00,423 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-10-04 23:46:00,448 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-10-04 23:46:00,448 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-10-04 23:46:00,470 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-10-04 23:46:00,531 [ scc.git] DEBUG Already up to date. 2026-10-04 23:46:00,532 [ scc.git] DEBUG Calling 'git fetch origin pull/37/head' 2026-10-04 23:46:00,968 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-webtest 2026-10-04 23:46:00,968 [ scc.git] DEBUG * branch refs/pull/37/head -> FETCH_HEAD 2026-10-04 23:46:00,993 [ scc.git] DEBUG ## Unique users: [] 2026-10-04 23:46:00,993 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:46:00,993 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:46:01,006 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8cf5f7e65ae8e945b134e41e77bc13a785aff478' 2026-10-04 23:46:01,039 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:46:01,052 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 37 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8cf5f7e65ae8e945b134e41e77bc13a785aff478' 2026-10-04 23:46:01,259 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-04 23:46:01,325 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-10-04 23:46:01,325 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-10-04 23:46:01,512 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:46:01,513 [ scc.git] DEBUG Calling 'git submodule update' 2026-10-04 23:46:01,632 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:46:01,632 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:46:01,645 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-04 23:46:01,769 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-10-04 23:46:01,837 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb10fc4ee10> has no local changes 2026-10-04 23:46:01,837 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: openmicroscopy/omero-webtest Already up to date. Merged PRs: - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#100 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/100/)' 2026-10-04 23:46:01,972 [ scc.git] DEBUG [detached HEAD 6c7f63b] merge master -Dorg -Ssuccess-only 2026-10-04 23:46:01,974 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:46:01,974 [ scc.repo] DEBUG ## PRs found: 2026-10-04 23:46:02,204 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 2 2026-10-04 23:46:02,204 [ scc.repo] DEBUG ## Branches found: 2026-10-04 23:46:02,204 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway 2026-10-04 23:46:02,206 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:46:02,206 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:46:02,229 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-10-04 23:46:02,252 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-10-04 23:46:02,252 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-10-04 23:46:02,282 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-10-04 23:46:02,346 [ scc.git] DEBUG Already up to date. 2026-10-04 23:46:02,346 [ scc.git] DEBUG ## Unique users: [] 2026-10-04 23:46:02,346 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:46:02,346 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:46:02,365 [ scc.git] DEBUG Calling 'git submodule update' 2026-10-04 23:46:02,492 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:46:02,492 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:46:02,508 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-04 23:46:02,620 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-10-04 23:46:02,721 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb10c08f9d0> has no local changes 2026-10-04 23:46:02,721 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/rOMERO-gateway Already up to date. Generated by OMERO-plugins-push#100 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/100/)' 2026-10-04 23:46:02,868 [ scc.git] DEBUG [detached HEAD 5d185b8] merge master -Dorg -Ssuccess-only 2026-10-04 23:46:02,870 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:46:02,871 [ scc.git] INFO Overriding base-branch from master to develop 2026-10-04 23:46:02,871 [ scc.repo] DEBUG ## PRs found: 2026-10-04 23:46:03,164 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None 2026-10-04 23:46:03,670 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/232 HTTP/1.1" 200 None 2026-10-04 23:46:04,155 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f?page=1 HTTP/1.1" 200 None 2026-10-04 23:46:04,725 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-04 23:46:05,253 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-10-04 23:46:05,807 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f?page=1 HTTP/1.1" 200 None 2026-10-04 23:46:06,258 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/e190baa635f40826befc84321719243092ee849f?per_page=1 HTTP/1.1" 200 2 2026-10-04 23:46:06,259 [ scc.repo] DEBUG - PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`' 2026-10-04 23:46:06,259 [ scc.repo] DEBUG ## Branches found: 2026-10-04 23:46:06,259 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts 2026-10-04 23:46:06,260 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:46:06,260 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:46:06,279 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop' 2026-10-04 23:46:06,297 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-10-04 23:46:06,297 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop' 2026-10-04 23:46:06,402 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop' 2026-10-04 23:46:06,672 [ scc.git] DEBUG Updating 4b4c755..5b4d768 2026-10-04 23:46:07,303 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/231 HTTP/1.1" 200 None 2026-10-04 23:46:08,017 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/229 HTTP/1.1" 200 None 2026-10-04 23:46:08,770 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/223 HTTP/1.1" 200 None 2026-10-04 23:46:09,479 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/230 HTTP/1.1" 200 None 2026-10-04 23:46:10,234 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/228 HTTP/1.1" 200 None 2026-10-04 23:46:11,019 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None 2026-10-04 23:46:11,830 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None 2026-10-04 23:46:11,831 [ scc.git] DEBUG Calling 'git fetch origin pull/232/head' 2026-10-04 23:46:12,361 [ scc.git] DEBUG From https://github.com/ome/scripts 2026-10-04 23:46:12,361 [ scc.git] DEBUG * branch refs/pull/232/head -> FETCH_HEAD 2026-10-04 23:46:12,395 [ scc.git] DEBUG ## Unique users: [] 2026-10-04 23:46:12,395 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:46:12,395 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:46:12,409 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...e190baa635f40826befc84321719243092ee849f' 2026-10-04 23:46:12,442 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:46:12,455 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 232 (Add Auto header detection to `Populate_Metadata.py`) e190baa635f40826befc84321719243092ee849f' 2026-10-04 23:46:12,673 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-04 23:46:12,736 [ scc.git] DEBUG omero/import_scripts/Populate_Metadata.py | 26 ++++++++++++++++++++++++-- 2026-10-04 23:46:12,736 [ scc.git] DEBUG 1 file changed, 24 insertions(+), 2 deletions(-) 2026-10-04 23:46:12,921 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:46:12,922 [ scc.git] DEBUG Calling 'git submodule update' 2026-10-04 23:46:13,052 [ scc.git] DEBUG Get sha1 of %s 2026-10-04 23:46:13,052 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-04 23:46:13,068 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-04 23:46:13,179 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-10-04 23:46:13,243 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb10c08e310> has no local changes 2026-10-04 23:46:13,243 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/scripts Updating 4b4c755..5b4d768 Previously merged: - PR 231 jburel 'Create Release ' - PR 229 Rdornier 'Adding support for custom user label' - PR 223 will-moore 'don't attempt ROI stats on big images' - PR 230 Rdornier 'Import from csv fix' - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows' - PR 227 jburel 'Replace tostring by tobytes' - PR 225 will-moore 'Fix param names and assertion texts in tests' Merged PRs: - PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`' Generated by OMERO-plugins-push#100 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/100/)' 2026-10-04 23:46:13,393 [ scc.git] DEBUG [detached HEAD 4a17c2e] merge master -Dorg -Ssuccess-only 2026-10-04 23:46:13,395 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:46:13,395 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-04 23:46:13,648 [ scc.config] DEBUG Found submodule.figure.url 2026-10-04 23:46:13,836 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:46:13,870 [ scc.config] DEBUG Found submodule.minimal-omero-client.url 2026-10-04 23:46:14,266 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:46:14,299 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch 2026-10-04 23:46:14,309 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url 2026-10-04 23:46:14,697 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:46:14,729 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch 2026-10-04 23:46:14,737 [ scc.config] DEBUG Found submodule.omero-cli-render.url 2026-10-04 23:46:15,154 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:46:15,185 [ scc.config] DEBUG Found submodule.omero-cli-render.branch 2026-10-04 23:46:15,195 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url 2026-10-04 23:46:15,594 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:46:15,637 [ scc.config] DEBUG Found submodule.omero-figure.url 2026-10-04 23:46:16,029 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:46:16,060 [ scc.config] DEBUG Found submodule.omero-figure.branch 2026-10-04 23:46:16,069 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url 2026-10-04 23:46:16,454 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:46:16,490 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch 2026-10-04 23:46:16,499 [ scc.config] DEBUG Found submodule.omero-gallery.url 2026-10-04 23:46:16,883 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:46:16,916 [ scc.config] DEBUG Found submodule.omero-gallery.branch 2026-10-04 23:46:16,925 [ scc.config] DEBUG Found submodule.omero-iviewer.url 2026-10-04 23:46:17,343 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:46:17,376 [ scc.config] DEBUG Found submodule.omero-iviewer.branch 2026-10-04 23:46:17,386 [ scc.config] DEBUG Found submodule.omero-mapr.url 2026-10-04 23:46:17,778 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:46:17,816 [ scc.config] DEBUG Found submodule.omero-mapr.branch 2026-10-04 23:46:17,824 [ scc.config] DEBUG Found submodule.omero-metadata.url 2026-10-04 23:46:18,195 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:46:18,227 [ scc.config] DEBUG Found submodule.omero-metadata.branch 2026-10-04 23:46:18,236 [ scc.config] DEBUG Found submodule.omero-parade.url 2026-10-04 23:46:18,623 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:46:18,657 [ scc.config] DEBUG Found submodule.omero-parade.branch 2026-10-04 23:46:18,666 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url 2026-10-04 23:46:19,294 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:46:19,326 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch 2026-10-04 23:46:19,334 [ scc.config] DEBUG Found submodule.omero-rois.url 2026-10-04 23:46:19,723 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:46:19,764 [ scc.config] DEBUG Found submodule.omero-signup.url 2026-10-04 23:46:20,166 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:46:20,205 [ scc.config] DEBUG Found submodule.omero-test-infra.url 2026-10-04 23:46:20,600 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:46:20,635 [ scc.config] DEBUG Found submodule.omero-test-infra.branch 2026-10-04 23:46:20,642 [ scc.config] DEBUG Found submodule.omero-upload.url 2026-10-04 23:46:21,025 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:46:21,068 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url 2026-10-04 23:46:21,451 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:46:21,490 [ scc.config] DEBUG Found submodule.omero-web-zarr.url 2026-10-04 23:46:21,911 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:46:21,946 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch 2026-10-04 23:46:21,967 [ scc.config] DEBUG Found submodule.omero-weberror.url 2026-10-04 23:46:22,390 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:46:22,446 [ scc.config] DEBUG Found submodule.omero-weberror.branch 2026-10-04 23:46:22,455 [ scc.config] DEBUG Found submodule.omero-webtest.url 2026-10-04 23:46:22,819 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:46:22,853 [ scc.config] DEBUG Found submodule.omero-webtest.branch 2026-10-04 23:46:22,863 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url 2026-10-04 23:46:23,279 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:46:23,312 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch 2026-10-04 23:46:23,321 [ scc.config] DEBUG Found submodule.scripts.url 2026-10-04 23:46:23,725 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-04 23:46:23,757 [ scc.config] DEBUG Found submodule.scripts.branch 2026-10-04 23:46:23,757 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-10-04 23:46:25,930 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb10fc17250> has local changes 2026-10-04 23:46:25,930 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-plugins Already up to date. Merged PRs: - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' Repository: ome/figure Excluded PRs: - PR 12 will-moore 'Browser based export' (stage: draft) - PR 9 will-moore 'Save omezarr collection' (stage: draft) Updating 3935875..e92b4e8 Previously merged: - PR 20 will-moore 'Hide export dropdown unless omero' - PR 19 Rdornier 'Fix rectangle crop' - PR 14 will-moore 'App served by omero env' - PR 17 Rdornier 'Do not crop rotated panel at export' - PR 15 will-moore 'Replace navbar 'OMERO' with 'figure' and OME logo' Merged PRs: - PR 5 will-moore 'Add sample_figures/ngff_images_figure.json' Repository: ome/minimal-omero-client Already up to date. Repository: ome/omero-cli-duplicate Excluded PRs: - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment) Already up to date. Merged PRs: - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-cli-render Excluded PRs: - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft) Updating ce6e13c..68b7303 Previously merged: - PR 74 jburel 'Replace manual changelog by automated GH release step' - PR 75 jburel 'Sort the new channels to ensure settings are set' - PR 71 dominikl 'Escape slash character in image names' - PR 69 dominikl 'Fix help text for impo/export commands' Merged PRs: - PR 59 will-moore 'Apply settings to Plate' Repository: ome/omero-cli-zarr Excluded PRs: - PR 166 will-moore 'Downsample scale option' (stage: draft) - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment) Updating 11d3587..d5f88d8 Previously merged: - PR 193 dominikl 'Only parse import uris if stated' - PR 182 will-moore 'Revert "Remove support for Plate import"' - PR 194 will-moore 'Update uk1s3.embassy links to livingobjects' - PR 197 pwalczysko 'Fix pragma' - PR 196 will-moore 'Storage options only if needed' - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' - PR 192 jburel 'Set Omero pixel size' - PR 186 jburel 'Create release from tag' - PR 187 dominikl 'Fix target-by-name option' - PR 180 will-moore 'Import command' - PR 179 will-moore 'Changelog 0.6.0' - PR 177 jburel 'Replace fromstring by frombuffer' - PR 175 will-moore 'Pin ome-zarr-py <0.12.0' - PR 147 will-moore 'Name option' - PR 173 will-moore 'Add test_export_plate_polygons()' - PR 171 will-moore 'Initial addition of integration tests' - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Conflicting PRs (not included): - PR 174 will-moore 'Skip wells' - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' Repository: ome/omero-figure Updating 9cc36cde..3195c3df Previously merged: - PR 704 jburel 'Revert commit 49ae9c9' - PR 703 will-moore 'Readme remove rc' - PR 700 will-moore 'Fix parentheses in zoom level for loop for export script' - PR 692 will-moore 'colorbar lut background fix' - PR 701 will-moore 'bump nanoid to 3.3.18 with 'npm audit fix'' - PR 698 dependabot[bot] 'Bump dompurify from 3.4.9 to 3.4.13' - PR 697 dependabot[bot] 'Bump postcss from 8.5.15 to 8.5.25' - PR 695 dependabot[bot] 'Bump immutable from 5.1.6 to 5.1.9' - PR 693 dependabot[bot] 'Bump dompurify from 3.4.0 to 3.4.9' - PR 691 dependabot[bot] 'Bump esbuild and vite' - PR 686 will-moore 'Add note about zarr etc requirement for export script with zarr images' - PR 690 dependabot[bot] 'Bump postcss from 8.5.3 to 8.5.15' - PR 681 dependabot[bot] 'Bump dompurify from 3.3.2 to 3.4.0' - PR 688 will-moore 'app handles ?image=1 without needing /new?image=1' - PR 685 will-moore 'Fix static files links for release build' - PR 683 will-moore 'Add touch support for clicking on single panel' - PR 680 will-moore 'Use --pre install for export script in README' - PR 684 will-moore 'Fix PKG_VERSION fix in publish_pypi.yml' - PR 682 will-moore 'Enable pre-release rc workflow with bumpversion and publish to pypi' - PR 679 will-moore 'Remove commit from gist demoUrl to load latest, with livingobjects URLs' - PR 677 dependabot[bot] 'Bump vite from 6.4.1 to 6.4.2' - PR 666 will-moore 'Standalone app' - PR 676 dependabot[bot] 'Bump picomatch' - PR 669 will-moore 'Standalone python script' - PR 662 will-moore 'Export script handles OME-zarr images' - PR 663 will-moore 'Zarr' - PR 674 dependabot[bot] 'Bump immutable from 4.1.0 to 4.3.8' - PR 675 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.2' - PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8' - PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues' - PR 667 Tom-TBT 'Label suggestion interface' - PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID' - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO' - PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0' - PR 664 Nirkan 'Handle many channels ' - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes' - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540' - PR 661 Rdornier 'Align to grid - check if panels are already in the grid' - PR 649 jburel 'Replace manual changelog by automated GH release step' - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout' - PR 637 Rdornier 'Fix scalebar position' - PR 600 Rdornier 'Label on rois' - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles' - PR 651 Rdornier 'More compliant align to grid' - PR 650 jburel 'Bump Python version' - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…' - PR 610 will-moore 'Add docs/contributing.rst' - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1' - PR 646 JensWendt 'fix word wrap of image names' - PR 612 will-moore 'Script version' - PR 630 will-moore 'Fix color and position for ALL new panel insets' - PR 616 Rdornier 'Fix labels around border' - PR 605 Tom-TBT 'Colorbar feature' - PR 638 Rdornier 'Fix arrow opacity' - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4' - PR 635 dependabot[bot] 'Bump esbuild and vite' - PR 623 will-moore 'Fix wrapping of label X button. see issues/622' - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 706 will-moore 'Figure repo migration' Conflicting PRs (not included): - PR 710 dependabot[bot] 'Bump dompurify from 3.4.13 to 3.4.16' Repository: ome/omero-fpbioimage Already up to date. Merged PRs: - PR 18 jburel 'default size z value' - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-gallery Already up to date. Merged PRs: - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - PR 114 dependabot[bot] 'Bump tar and fsevents' - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' Conflicting PRs (not included): - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' Repository: ome/omero-iviewer Excluded PRs: - PR 420 will-moore 'Add release process to README' (exclude comment) - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment) Updating 7a798cee..0a836211 Previously merged: - PR 574 dependabot[bot] 'Bump minimatch from 3.1.2 to 3.1.5' - PR 573 dependabot[bot] 'Bump serialize-javascript and mocha' - PR 572 dependabot[bot] 'Bump brace-expansion from 1.1.13 to 1.1.21' - PR 571 dependabot[bot] 'Bump fast-uri from 3.1.7 to 3.1.8' - PR 570 dependabot[bot] 'Bump engine.io from 6.6.9 to 6.6.11' - PR 568 dependabot[bot] 'Bump webpack-dev-middleware from 8.1.0 to 8.3.0' - PR 566 dependabot[bot] 'Bump js-yaml from 4.1.0 to 4.3.2' - PR 565 dependabot[bot] 'Bump qs and body-parser' - PR 564 dependabot[bot] 'Bump fast-uri from 3.1.5 to 3.1.7' - PR 567 will-moore 'Basic fix of prev/next shapes when shapes sorted' - PR 562 will-moore 'Keyboard select roi' - PR 563 will-moore 'Use POST data for imgRdef save' - PR 559 dependabot[bot] 'Bump js-yaml and mocha' - PR 558 dependabot[bot] 'Bump fast-uri from 3.1.4 to 3.1.5' - PR 557 dependabot[bot] 'Bump socket.io-parser from 4.2.6 to 4.2.7' - PR 541 will-moore 'Only add channel to tile request string if active' - PR 556 dependabot[bot] 'Bump webpack-dev-server from 5.2.6 to 6.0.0' - PR 554 dependabot[bot] 'Bump http-proxy-middleware from 2.0.9 to 2.0.10' - PR 553 dependabot[bot] 'Bump postcss from 8.5.10 to 8.5.25' - PR 552 dependabot[bot] 'Bump tmp from 0.2.6 to 0.2.7' - PR 551 dependabot[bot] 'Bump body-parser from 1.20.5 to 1.20.6' - PR 550 dependabot[bot] 'Bump webpack-dev-server from 5.2.4 to 5.2.6' - PR 549 dependabot[bot] 'Bump shell-quote from 1.8.4 to 1.10.0' - PR 548 dependabot[bot] 'Bump fast-uri from 3.1.2 to 3.1.4' - PR 547 dependabot[bot] 'Bump websocket-driver from 0.7.4 to 0.7.5' - PR 540 dependabot[bot] 'Bump @babel/core from 7.5.4 to 7.29.6' - PR 539 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter' - PR 537 dependabot[bot] 'Bump launch-editor from 2.13.2 to 2.14.1' - PR 535 dependabot[bot] 'Bump tmp and eslint' - PR 527 PollenGeo 'Add grid overlay feature with configurable cell size and labels' - PR 534 will-moore 'Fix settings.md link to master branch. Move iviewer redirect settings' - PR 533 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter' - PR 530 dependabot[bot] 'Bump webpack-dev-server from 4.13.2 to 5.2.4' - PR 528 dependabot[bot] 'Bump fast-uri from 3.1.0 to 3.1.2' - PR 529 will-moore 'Image id and roi id initial params' - PR 526 will-moore 'Add keyboard handling for Left, Right, Up, Down Arrows to pan' - PR 525 dependabot[bot] 'Bump postcss from 8.4.31 to 8.5.10' - PR 524 dependabot[bot] 'Bump protocol-buffers-schema from 3.3.2 to 3.6.1' - PR 523 dependabot[bot] 'Bump follow-redirects from 1.15.6 to 1.16.0' - PR 522 dependabot[bot] 'Bump lodash from 4.17.21 to 4.18.1' - PR 521 dependabot[bot] 'Bump brace-expansion from 1.1.11 to 1.1.13' - PR 520 dependabot[bot] 'Bump node-forge from 1.3.1 to 1.4.0' - PR 519 dependabot[bot] 'Bump picomatch from 2.3.1 to 2.3.2' - PR 518 dependabot[bot] 'Bump ajv from 6.12.6 to 6.14.0' - PR 514 Tom-TBT 'Fix where interpolate_pixels server config is read from' - PR 513 jburel 'Bump Python version' - PR 512 jburel 'Replace manual changelog by automated GH release step' - PR 465 will-moore 'Save as Figure' - PR 517 will-moore 'Fix roi link permissions' - PR 516 dependabot[bot] 'Bump socket.io-parser from 4.2.4 to 4.2.6' - PR 510 joshmoore 'Re-enable omero-test-infra' - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 471 will-moore 'Z projection disabled tooltip' Conflicting PRs (not included): - PR 532 will-moore 'Zarr layers' Repository: ome/omero-mapr Excluded PRs: - PR 79 will-moore 'Right panel title' (exclude comment) - PR 74 will-moore 'mapr extension of webclient' (exclude comment) Already up to date. Merged PRs: - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' - PR 97 JoshuaFortriede 'BUG Fix: use HTML value to replace HTML' - PR 98 JoshuaFortriede 'use namespace with keys' Conflicting PRs (not included): - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-metadata Updating 3cd120c..6a653e4 Previously merged: - PR 95 sbesson 'Remove manual CHANGELOG in favor of automated GitHub releases' - PR 94 sbesson 'Cap pandas to 2.x and clean up unused dependencies' - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 92 dominikl 'add resolve_rois to projectwrapper' Conflicting PRs (not included): - PR 64 will-moore 'Support images_by_name for Screen and Plate' Repository: ome/omero-parade Excluded PRs: - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft) - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment) - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment) - PR 39 chris-allan 'Expand all for Screens' (exclude comment) Already up to date. Merged PRs: - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Repository: ome/omero-prometheus-tools Already up to date. Merged PRs: - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-rois Excluded PRs: - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) Updating bdfeb5e..fc9ff96 Previously merged: - PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml' - PR 35 will-moore 'Add roi to array functions' Repository: ome/omero-signup Already up to date. Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Conflicting PRs (not included): - PR 14 manics 'Add pre-commit (black, flake8)' Repository: openmicroscopy/omero-test-infra Excluded PRs: - PR 75 marimeireles 'Microservices' (user: marimeireles) Updating cda3ec6..c8a0015 Previously merged: - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT' - PR 82 jburel 'Upgrade python' - PR 81 erickmartins 'add ulimits to omero-server container' Merged PRs: - PR 74 joshmoore 'Add 'ms' target for ./docker' Repository: ome/omero-upload Already up to date. Merged PRs: - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-virtual-microscope Updating deab817..160d894 Previously merged: - PR 20 jburel 'Build' Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-web-zarr Excluded PRs: - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft) Updating 8f3c313..4e1e685 Previously merged: - PR 23 lubianat 'Fix mix of .rst and .md on README' - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints' Merged PRs: - PR 21 will-moore 'Web zarr import' Conflicting PRs (not included): - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' Repository: openmicroscopy/omero-weberror Already up to date. Merged PRs: - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: openmicroscopy/omero-webtest Already up to date. Merged PRs: - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/rOMERO-gateway Already up to date. Repository: ome/scripts Updating 4b4c755..5b4d768 Previously merged: - PR 231 jburel 'Create Release ' - PR 229 Rdornier 'Adding support for custom user label' - PR 223 will-moore 'don't attempt ROI stats on big images' - PR 230 Rdornier 'Import from csv fix' - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows' - PR 227 jburel 'Replace tostring by tobytes' - PR 225 will-moore 'Fix param names and assertion texts in tests' Merged PRs: - PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`' Generated by OMERO-plugins-push#100 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/100/)' 2026-10-04 23:46:26,588 [ scc.git] DEBUG [detached HEAD fda7732] merge master -Dorg -Ssuccess-only 2026-10-04 23:46:26,588 [ scc.git] DEBUG 24 files changed, 46 insertions(+), 46 deletions(-) 2026-10-04 23:46:26,589 [ scc.merge] INFO Repository: ome/omero-plugins 2026-10-04 23:46:26,590 [ scc.merge] INFO Already up to date. 2026-10-04 23:46:26,590 [ scc.merge] INFO 2026-10-04 23:46:26,590 [ scc.merge] INFO Merged PRs: 2026-10-04 23:46:26,590 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2026-10-04 23:46:26,590 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2026-10-04 23:46:26,590 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2026-10-04 23:46:26,590 [ scc.merge] INFO 2026-10-04 23:46:26,590 [ scc.merge] INFO Repository: ome/figure 2026-10-04 23:46:26,590 [ scc.merge] INFO Excluded PRs: 2026-10-04 23:46:26,590 [ scc.merge] INFO - PR 12 will-moore 'Browser based export' (stage: draft) 2026-10-04 23:46:26,590 [ scc.merge] INFO - PR 9 will-moore 'Save omezarr collection' (stage: draft) 2026-10-04 23:46:26,590 [ scc.merge] INFO Updating 3935875..e92b4e8 2026-10-04 23:46:26,590 [ scc.merge] INFO Previously merged: 2026-10-04 23:46:26,590 [ scc.merge] INFO - PR 20 will-moore 'Hide export dropdown unless omero' 2026-10-04 23:46:26,590 [ scc.merge] INFO - PR 19 Rdornier 'Fix rectangle crop' 2026-10-04 23:46:26,590 [ scc.merge] INFO - PR 14 will-moore 'App served by omero env' 2026-10-04 23:46:26,590 [ scc.merge] INFO - PR 17 Rdornier 'Do not crop rotated panel at export' 2026-10-04 23:46:26,590 [ scc.merge] INFO - PR 15 will-moore 'Replace navbar 'OMERO' with 'figure' and OME logo' 2026-10-04 23:46:26,590 [ scc.merge] INFO 2026-10-04 23:46:26,590 [ scc.merge] INFO Merged PRs: 2026-10-04 23:46:26,590 [ scc.merge] INFO - PR 5 will-moore 'Add sample_figures/ngff_images_figure.json' 2026-10-04 23:46:26,590 [ scc.merge] INFO 2026-10-04 23:46:26,590 [ scc.merge] INFO Repository: ome/minimal-omero-client 2026-10-04 23:46:26,590 [ scc.merge] INFO Already up to date. 2026-10-04 23:46:26,590 [ scc.merge] INFO 2026-10-04 23:46:26,590 [ scc.merge] INFO 2026-10-04 23:46:26,590 [ scc.merge] INFO Repository: ome/omero-cli-duplicate 2026-10-04 23:46:26,590 [ scc.merge] INFO Excluded PRs: 2026-10-04 23:46:26,590 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment) 2026-10-04 23:46:26,590 [ scc.merge] INFO Already up to date. 2026-10-04 23:46:26,590 [ scc.merge] INFO 2026-10-04 23:46:26,590 [ scc.merge] INFO Merged PRs: 2026-10-04 23:46:26,590 [ scc.merge] INFO - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-10-04 23:46:26,590 [ scc.merge] INFO 2026-10-04 23:46:26,590 [ scc.merge] INFO Repository: ome/omero-cli-render 2026-10-04 23:46:26,590 [ scc.merge] INFO Excluded PRs: 2026-10-04 23:46:26,590 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft) 2026-10-04 23:46:26,590 [ scc.merge] INFO Updating ce6e13c..68b7303 2026-10-04 23:46:26,590 [ scc.merge] INFO Previously merged: 2026-10-04 23:46:26,590 [ scc.merge] INFO - PR 74 jburel 'Replace manual changelog by automated GH release step' 2026-10-04 23:46:26,590 [ scc.merge] INFO - PR 75 jburel 'Sort the new channels to ensure settings are set' 2026-10-04 23:46:26,590 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names' 2026-10-04 23:46:26,590 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands' 2026-10-04 23:46:26,590 [ scc.merge] INFO 2026-10-04 23:46:26,590 [ scc.merge] INFO Merged PRs: 2026-10-04 23:46:26,590 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate' 2026-10-04 23:46:26,590 [ scc.merge] INFO 2026-10-04 23:46:26,590 [ scc.merge] INFO Repository: ome/omero-cli-zarr 2026-10-04 23:46:26,590 [ scc.merge] INFO Excluded PRs: 2026-10-04 23:46:26,590 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft) 2026-10-04 23:46:26,590 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) 2026-10-04 23:46:26,590 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment) 2026-10-04 23:46:26,590 [ scc.merge] INFO Updating 11d3587..d5f88d8 2026-10-04 23:46:26,590 [ scc.merge] INFO Previously merged: 2026-10-04 23:46:26,590 [ scc.merge] INFO - PR 193 dominikl 'Only parse import uris if stated' 2026-10-04 23:46:26,590 [ scc.merge] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"' 2026-10-04 23:46:26,590 [ scc.merge] INFO - PR 194 will-moore 'Update uk1s3.embassy links to livingobjects' 2026-10-04 23:46:26,590 [ scc.merge] INFO - PR 197 pwalczysko 'Fix pragma' 2026-10-04 23:46:26,590 [ scc.merge] INFO - PR 196 will-moore 'Storage options only if needed' 2026-10-04 23:46:26,590 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' 2026-10-04 23:46:26,590 [ scc.merge] INFO - PR 192 jburel 'Set Omero pixel size' 2026-10-04 23:46:26,590 [ scc.merge] INFO - PR 186 jburel 'Create release from tag' 2026-10-04 23:46:26,590 [ scc.merge] INFO - PR 187 dominikl 'Fix target-by-name option' 2026-10-04 23:46:26,590 [ scc.merge] INFO - PR 180 will-moore 'Import command' 2026-10-04 23:46:26,590 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0' 2026-10-04 23:46:26,590 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer' 2026-10-04 23:46:26,590 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 147 will-moore 'Name option' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-10-04 23:46:26,591 [ scc.merge] INFO 2026-10-04 23:46:26,591 [ scc.merge] INFO Conflicting PRs (not included): 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 174 will-moore 'Skip wells' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' 2026-10-04 23:46:26,591 [ scc.merge] INFO 2026-10-04 23:46:26,591 [ scc.merge] INFO Repository: ome/omero-figure 2026-10-04 23:46:26,591 [ scc.merge] INFO Updating 9cc36cde..3195c3df 2026-10-04 23:46:26,591 [ scc.merge] INFO Previously merged: 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 704 jburel 'Revert commit 49ae9c9' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 703 will-moore 'Readme remove rc' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 700 will-moore 'Fix parentheses in zoom level for loop for export script' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 692 will-moore 'colorbar lut background fix' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 701 will-moore 'bump nanoid to 3.3.18 with 'npm audit fix'' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 698 dependabot[bot] 'Bump dompurify from 3.4.9 to 3.4.13' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 697 dependabot[bot] 'Bump postcss from 8.5.15 to 8.5.25' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 695 dependabot[bot] 'Bump immutable from 5.1.6 to 5.1.9' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 693 dependabot[bot] 'Bump dompurify from 3.4.0 to 3.4.9' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 691 dependabot[bot] 'Bump esbuild and vite' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 686 will-moore 'Add note about zarr etc requirement for export script with zarr images' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 690 dependabot[bot] 'Bump postcss from 8.5.3 to 8.5.15' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 681 dependabot[bot] 'Bump dompurify from 3.3.2 to 3.4.0' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 688 will-moore 'app handles ?image=1 without needing /new?image=1' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 685 will-moore 'Fix static files links for release build' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 683 will-moore 'Add touch support for clicking on single panel' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 680 will-moore 'Use --pre install for export script in README' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 684 will-moore 'Fix PKG_VERSION fix in publish_pypi.yml' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 682 will-moore 'Enable pre-release rc workflow with bumpversion and publish to pypi' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 679 will-moore 'Remove commit from gist demoUrl to load latest, with livingobjects URLs' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 677 dependabot[bot] 'Bump vite from 6.4.1 to 6.4.2' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 666 will-moore 'Standalone app' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 676 dependabot[bot] 'Bump picomatch' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 669 will-moore 'Standalone python script' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 662 will-moore 'Export script handles OME-zarr images' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 663 will-moore 'Zarr' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 674 dependabot[bot] 'Bump immutable from 4.1.0 to 4.3.8' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 675 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.2' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 667 Tom-TBT 'Label suggestion interface' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 664 Nirkan 'Handle many channels ' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 661 Rdornier 'Align to grid - check if panels are already in the grid' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 649 jburel 'Replace manual changelog by automated GH release step' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 651 Rdornier 'More compliant align to grid' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 650 jburel 'Bump Python version' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 646 JensWendt 'fix word wrap of image names' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 612 will-moore 'Script version' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622' 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-10-04 23:46:26,591 [ scc.merge] INFO 2026-10-04 23:46:26,591 [ scc.merge] INFO Merged PRs: 2026-10-04 23:46:26,591 [ scc.merge] INFO - PR 706 will-moore 'Figure repo migration' 2026-10-04 23:46:26,592 [ scc.merge] INFO 2026-10-04 23:46:26,592 [ scc.merge] INFO Conflicting PRs (not included): 2026-10-04 23:46:26,592 [ scc.merge] INFO - PR 710 dependabot[bot] 'Bump dompurify from 3.4.13 to 3.4.16' 2026-10-04 23:46:26,592 [ scc.merge] INFO 2026-10-04 23:46:26,592 [ scc.merge] INFO Repository: ome/omero-fpbioimage 2026-10-04 23:46:26,592 [ scc.merge] INFO Already up to date. 2026-10-04 23:46:26,592 [ scc.merge] INFO 2026-10-04 23:46:26,592 [ scc.merge] INFO Merged PRs: 2026-10-04 23:46:26,592 [ scc.merge] INFO - PR 18 jburel 'default size z value' 2026-10-04 23:46:26,592 [ scc.merge] INFO - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-10-04 23:46:26,592 [ scc.merge] INFO 2026-10-04 23:46:26,592 [ scc.merge] INFO Repository: ome/omero-gallery 2026-10-04 23:46:26,592 [ scc.merge] INFO Already up to date. 2026-10-04 23:46:26,592 [ scc.merge] INFO 2026-10-04 23:46:26,592 [ scc.merge] INFO Merged PRs: 2026-10-04 23:46:26,592 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' 2026-10-04 23:46:26,592 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents' 2026-10-04 23:46:26,592 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' 2026-10-04 23:46:26,592 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' 2026-10-04 23:46:26,592 [ scc.merge] INFO 2026-10-04 23:46:26,592 [ scc.merge] INFO Conflicting PRs (not included): 2026-10-04 23:46:26,592 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' 2026-10-04 23:46:26,592 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' 2026-10-04 23:46:26,592 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' 2026-10-04 23:46:26,592 [ scc.merge] INFO 2026-10-04 23:46:26,592 [ scc.merge] INFO Repository: ome/omero-iviewer 2026-10-04 23:46:26,592 [ scc.merge] INFO Excluded PRs: 2026-10-04 23:46:26,592 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment) 2026-10-04 23:46:26,592 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment) 2026-10-04 23:46:26,592 [ scc.merge] INFO Updating 7a798cee..0a836211 2026-10-04 23:46:26,592 [ scc.merge] INFO Previously merged: 2026-10-04 23:46:26,592 [ scc.merge] INFO - PR 574 dependabot[bot] 'Bump minimatch from 3.1.2 to 3.1.5' 2026-10-04 23:46:26,592 [ scc.merge] INFO - PR 573 dependabot[bot] 'Bump serialize-javascript and mocha' 2026-10-04 23:46:26,592 [ scc.merge] INFO - PR 572 dependabot[bot] 'Bump brace-expansion from 1.1.13 to 1.1.21' 2026-10-04 23:46:26,592 [ scc.merge] INFO - PR 571 dependabot[bot] 'Bump fast-uri from 3.1.7 to 3.1.8' 2026-10-04 23:46:26,592 [ scc.merge] INFO - PR 570 dependabot[bot] 'Bump engine.io from 6.6.9 to 6.6.11' 2026-10-04 23:46:26,592 [ scc.merge] INFO - PR 568 dependabot[bot] 'Bump webpack-dev-middleware from 8.1.0 to 8.3.0' 2026-10-04 23:46:26,592 [ scc.merge] INFO - PR 566 dependabot[bot] 'Bump js-yaml from 4.1.0 to 4.3.2' 2026-10-04 23:46:26,592 [ scc.merge] INFO - PR 565 dependabot[bot] 'Bump qs and body-parser' 2026-10-04 23:46:26,592 [ scc.merge] INFO - PR 564 dependabot[bot] 'Bump fast-uri from 3.1.5 to 3.1.7' 2026-10-04 23:46:26,592 [ scc.merge] INFO - PR 567 will-moore 'Basic fix of prev/next shapes when shapes sorted' 2026-10-04 23:46:26,592 [ scc.merge] INFO - PR 562 will-moore 'Keyboard select roi' 2026-10-04 23:46:26,592 [ scc.merge] INFO - PR 563 will-moore 'Use POST data for imgRdef save' 2026-10-04 23:46:26,592 [ scc.merge] INFO - PR 559 dependabot[bot] 'Bump js-yaml and mocha' 2026-10-04 23:46:26,592 [ scc.merge] INFO - PR 558 dependabot[bot] 'Bump fast-uri from 3.1.4 to 3.1.5' 2026-10-04 23:46:26,592 [ scc.merge] INFO - PR 557 dependabot[bot] 'Bump socket.io-parser from 4.2.6 to 4.2.7' 2026-10-04 23:46:26,592 [ scc.merge] INFO - PR 541 will-moore 'Only add channel to tile request string if active' 2026-10-04 23:46:26,592 [ scc.merge] INFO - PR 556 dependabot[bot] 'Bump webpack-dev-server from 5.2.6 to 6.0.0' 2026-10-04 23:46:26,592 [ scc.merge] INFO - PR 554 dependabot[bot] 'Bump http-proxy-middleware from 2.0.9 to 2.0.10' 2026-10-04 23:46:26,593 [ scc.merge] INFO - PR 553 dependabot[bot] 'Bump postcss from 8.5.10 to 8.5.25' 2026-10-04 23:46:26,593 [ scc.merge] INFO - PR 552 dependabot[bot] 'Bump tmp from 0.2.6 to 0.2.7' 2026-10-04 23:46:26,593 [ scc.merge] INFO - PR 551 dependabot[bot] 'Bump body-parser from 1.20.5 to 1.20.6' 2026-10-04 23:46:26,593 [ scc.merge] INFO - PR 550 dependabot[bot] 'Bump webpack-dev-server from 5.2.4 to 5.2.6' 2026-10-04 23:46:26,593 [ scc.merge] INFO - PR 549 dependabot[bot] 'Bump shell-quote from 1.8.4 to 1.10.0' 2026-10-04 23:46:26,593 [ scc.merge] INFO - PR 548 dependabot[bot] 'Bump fast-uri from 3.1.2 to 3.1.4' 2026-10-04 23:46:26,593 [ scc.merge] INFO - PR 547 dependabot[bot] 'Bump websocket-driver from 0.7.4 to 0.7.5' 2026-10-04 23:46:26,593 [ scc.merge] INFO - PR 540 dependabot[bot] 'Bump @babel/core from 7.5.4 to 7.29.6' 2026-10-04 23:46:26,593 [ scc.merge] INFO - PR 539 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter' 2026-10-04 23:46:26,593 [ scc.merge] INFO - PR 537 dependabot[bot] 'Bump launch-editor from 2.13.2 to 2.14.1' 2026-10-04 23:46:26,593 [ scc.merge] INFO - PR 535 dependabot[bot] 'Bump tmp and eslint' 2026-10-04 23:46:26,593 [ scc.merge] INFO - PR 527 PollenGeo 'Add grid overlay feature with configurable cell size and labels' 2026-10-04 23:46:26,593 [ scc.merge] INFO - PR 534 will-moore 'Fix settings.md link to master branch. Move iviewer redirect settings' 2026-10-04 23:46:26,593 [ scc.merge] INFO - PR 533 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter' 2026-10-04 23:46:26,593 [ scc.merge] INFO - PR 530 dependabot[bot] 'Bump webpack-dev-server from 4.13.2 to 5.2.4' 2026-10-04 23:46:26,593 [ scc.merge] INFO - PR 528 dependabot[bot] 'Bump fast-uri from 3.1.0 to 3.1.2' 2026-10-04 23:46:26,593 [ scc.merge] INFO - PR 529 will-moore 'Image id and roi id initial params' 2026-10-04 23:46:26,593 [ scc.merge] INFO - PR 526 will-moore 'Add keyboard handling for Left, Right, Up, Down Arrows to pan' 2026-10-04 23:46:26,593 [ scc.merge] INFO - PR 525 dependabot[bot] 'Bump postcss from 8.4.31 to 8.5.10' 2026-10-04 23:46:26,593 [ scc.merge] INFO - PR 524 dependabot[bot] 'Bump protocol-buffers-schema from 3.3.2 to 3.6.1' 2026-10-04 23:46:26,593 [ scc.merge] INFO - PR 523 dependabot[bot] 'Bump follow-redirects from 1.15.6 to 1.16.0' 2026-10-04 23:46:26,593 [ scc.merge] INFO - PR 522 dependabot[bot] 'Bump lodash from 4.17.21 to 4.18.1' 2026-10-04 23:46:26,593 [ scc.merge] INFO - PR 521 dependabot[bot] 'Bump brace-expansion from 1.1.11 to 1.1.13' 2026-10-04 23:46:26,593 [ scc.merge] INFO - PR 520 dependabot[bot] 'Bump node-forge from 1.3.1 to 1.4.0' 2026-10-04 23:46:26,593 [ scc.merge] INFO - PR 519 dependabot[bot] 'Bump picomatch from 2.3.1 to 2.3.2' 2026-10-04 23:46:26,593 [ scc.merge] INFO - PR 518 dependabot[bot] 'Bump ajv from 6.12.6 to 6.14.0' 2026-10-04 23:46:26,593 [ scc.merge] INFO - PR 514 Tom-TBT 'Fix where interpolate_pixels server config is read from' 2026-10-04 23:46:26,593 [ scc.merge] INFO - PR 513 jburel 'Bump Python version' 2026-10-04 23:46:26,593 [ scc.merge] INFO - PR 512 jburel 'Replace manual changelog by automated GH release step' 2026-10-04 23:46:26,593 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure' 2026-10-04 23:46:26,593 [ scc.merge] INFO - PR 517 will-moore 'Fix roi link permissions' 2026-10-04 23:46:26,593 [ scc.merge] INFO - PR 516 dependabot[bot] 'Bump socket.io-parser from 4.2.4 to 4.2.6' 2026-10-04 23:46:26,593 [ scc.merge] INFO - PR 510 joshmoore 'Re-enable omero-test-infra' 2026-10-04 23:46:26,593 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-10-04 23:46:26,593 [ scc.merge] INFO 2026-10-04 23:46:26,593 [ scc.merge] INFO Merged PRs: 2026-10-04 23:46:26,593 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip' 2026-10-04 23:46:26,593 [ scc.merge] INFO 2026-10-04 23:46:26,593 [ scc.merge] INFO Conflicting PRs (not included): 2026-10-04 23:46:26,593 [ scc.merge] INFO - PR 532 will-moore 'Zarr layers' 2026-10-04 23:46:26,593 [ scc.merge] INFO 2026-10-04 23:46:26,594 [ scc.merge] INFO Repository: ome/omero-mapr 2026-10-04 23:46:26,594 [ scc.merge] INFO Excluded PRs: 2026-10-04 23:46:26,594 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment) 2026-10-04 23:46:26,594 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient' (exclude comment) 2026-10-04 23:46:26,594 [ scc.merge] INFO Already up to date. 2026-10-04 23:46:26,594 [ scc.merge] INFO 2026-10-04 23:46:26,594 [ scc.merge] INFO Merged PRs: 2026-10-04 23:46:26,594 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-10-04 23:46:26,594 [ scc.merge] INFO - PR 97 JoshuaFortriede 'BUG Fix: use HTML value to replace HTML' 2026-10-04 23:46:26,594 [ scc.merge] INFO - PR 98 JoshuaFortriede 'use namespace with keys' 2026-10-04 23:46:26,594 [ scc.merge] INFO 2026-10-04 23:46:26,594 [ scc.merge] INFO Conflicting PRs (not included): 2026-10-04 23:46:26,594 [ scc.merge] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-10-04 23:46:26,594 [ scc.merge] INFO 2026-10-04 23:46:26,594 [ scc.merge] INFO Repository: ome/omero-metadata 2026-10-04 23:46:26,594 [ scc.merge] INFO Updating 3cd120c..6a653e4 2026-10-04 23:46:26,594 [ scc.merge] INFO Previously merged: 2026-10-04 23:46:26,594 [ scc.merge] INFO - PR 95 sbesson 'Remove manual CHANGELOG in favor of automated GitHub releases' 2026-10-04 23:46:26,594 [ scc.merge] INFO - PR 94 sbesson 'Cap pandas to 2.x and clean up unused dependencies' 2026-10-04 23:46:26,594 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-10-04 23:46:26,594 [ scc.merge] INFO 2026-10-04 23:46:26,594 [ scc.merge] INFO Merged PRs: 2026-10-04 23:46:26,594 [ scc.merge] INFO - PR 92 dominikl 'add resolve_rois to projectwrapper' 2026-10-04 23:46:26,594 [ scc.merge] INFO 2026-10-04 23:46:26,594 [ scc.merge] INFO Conflicting PRs (not included): 2026-10-04 23:46:26,594 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate' 2026-10-04 23:46:26,594 [ scc.merge] INFO 2026-10-04 23:46:26,594 [ scc.merge] INFO Repository: ome/omero-parade 2026-10-04 23:46:26,594 [ scc.merge] INFO Excluded PRs: 2026-10-04 23:46:26,594 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft) 2026-10-04 23:46:26,594 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment) 2026-10-04 23:46:26,594 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment) 2026-10-04 23:46:26,594 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment) 2026-10-04 23:46:26,594 [ scc.merge] INFO Already up to date. 2026-10-04 23:46:26,594 [ scc.merge] INFO 2026-10-04 23:46:26,594 [ scc.merge] INFO Merged PRs: 2026-10-04 23:46:26,594 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' 2026-10-04 23:46:26,594 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' 2026-10-04 23:46:26,594 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-10-04 23:46:26,594 [ scc.merge] INFO 2026-10-04 23:46:26,594 [ scc.merge] INFO Repository: ome/omero-prometheus-tools 2026-10-04 23:46:26,594 [ scc.merge] INFO Already up to date. 2026-10-04 23:46:26,594 [ scc.merge] INFO 2026-10-04 23:46:26,594 [ scc.merge] INFO Merged PRs: 2026-10-04 23:46:26,594 [ scc.merge] INFO - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-10-04 23:46:26,594 [ scc.merge] INFO 2026-10-04 23:46:26,594 [ scc.merge] INFO Repository: ome/omero-rois 2026-10-04 23:46:26,594 [ scc.merge] INFO Excluded PRs: 2026-10-04 23:46:26,594 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) 2026-10-04 23:46:26,594 [ scc.merge] INFO Updating bdfeb5e..fc9ff96 2026-10-04 23:46:26,594 [ scc.merge] INFO Previously merged: 2026-10-04 23:46:26,594 [ scc.merge] INFO - PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml' 2026-10-04 23:46:26,594 [ scc.merge] INFO - PR 35 will-moore 'Add roi to array functions' 2026-10-04 23:46:26,594 [ scc.merge] INFO 2026-10-04 23:46:26,594 [ scc.merge] INFO 2026-10-04 23:46:26,594 [ scc.merge] INFO Repository: ome/omero-signup 2026-10-04 23:46:26,594 [ scc.merge] INFO Already up to date. 2026-10-04 23:46:26,594 [ scc.merge] INFO 2026-10-04 23:46:26,594 [ scc.merge] INFO Merged PRs: 2026-10-04 23:46:26,594 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-10-04 23:46:26,594 [ scc.merge] INFO 2026-10-04 23:46:26,594 [ scc.merge] INFO Conflicting PRs (not included): 2026-10-04 23:46:26,594 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)' 2026-10-04 23:46:26,594 [ scc.merge] INFO 2026-10-04 23:46:26,594 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra 2026-10-04 23:46:26,594 [ scc.merge] INFO Excluded PRs: 2026-10-04 23:46:26,594 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles) 2026-10-04 23:46:26,594 [ scc.merge] INFO Updating cda3ec6..c8a0015 2026-10-04 23:46:26,594 [ scc.merge] INFO Previously merged: 2026-10-04 23:46:26,594 [ scc.merge] INFO - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT' 2026-10-04 23:46:26,595 [ scc.merge] INFO - PR 82 jburel 'Upgrade python' 2026-10-04 23:46:26,595 [ scc.merge] INFO - PR 81 erickmartins 'add ulimits to omero-server container' 2026-10-04 23:46:26,595 [ scc.merge] INFO 2026-10-04 23:46:26,595 [ scc.merge] INFO Merged PRs: 2026-10-04 23:46:26,595 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' 2026-10-04 23:46:26,595 [ scc.merge] INFO 2026-10-04 23:46:26,595 [ scc.merge] INFO Repository: ome/omero-upload 2026-10-04 23:46:26,595 [ scc.merge] INFO Already up to date. 2026-10-04 23:46:26,595 [ scc.merge] INFO 2026-10-04 23:46:26,595 [ scc.merge] INFO Merged PRs: 2026-10-04 23:46:26,595 [ scc.merge] INFO - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-10-04 23:46:26,595 [ scc.merge] INFO 2026-10-04 23:46:26,595 [ scc.merge] INFO Repository: ome/omero-virtual-microscope 2026-10-04 23:46:26,595 [ scc.merge] INFO Updating deab817..160d894 2026-10-04 23:46:26,595 [ scc.merge] INFO Previously merged: 2026-10-04 23:46:26,595 [ scc.merge] INFO - PR 20 jburel 'Build' 2026-10-04 23:46:26,595 [ scc.merge] INFO 2026-10-04 23:46:26,595 [ scc.merge] INFO Merged PRs: 2026-10-04 23:46:26,595 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-10-04 23:46:26,595 [ scc.merge] INFO 2026-10-04 23:46:26,595 [ scc.merge] INFO Repository: ome/omero-web-zarr 2026-10-04 23:46:26,595 [ scc.merge] INFO Excluded PRs: 2026-10-04 23:46:26,595 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft) 2026-10-04 23:46:26,595 [ scc.merge] INFO Updating 8f3c313..4e1e685 2026-10-04 23:46:26,595 [ scc.merge] INFO Previously merged: 2026-10-04 23:46:26,595 [ scc.merge] INFO - PR 23 lubianat 'Fix mix of .rst and .md on README' 2026-10-04 23:46:26,595 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints' 2026-10-04 23:46:26,595 [ scc.merge] INFO 2026-10-04 23:46:26,595 [ scc.merge] INFO Merged PRs: 2026-10-04 23:46:26,595 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import' 2026-10-04 23:46:26,595 [ scc.merge] INFO 2026-10-04 23:46:26,595 [ scc.merge] INFO Conflicting PRs (not included): 2026-10-04 23:46:26,595 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' 2026-10-04 23:46:26,595 [ scc.merge] INFO 2026-10-04 23:46:26,595 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror 2026-10-04 23:46:26,595 [ scc.merge] INFO Already up to date. 2026-10-04 23:46:26,595 [ scc.merge] INFO 2026-10-04 23:46:26,595 [ scc.merge] INFO Merged PRs: 2026-10-04 23:46:26,595 [ scc.merge] INFO - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-10-04 23:46:26,595 [ scc.merge] INFO 2026-10-04 23:46:26,595 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest 2026-10-04 23:46:26,595 [ scc.merge] INFO Already up to date. 2026-10-04 23:46:26,595 [ scc.merge] INFO 2026-10-04 23:46:26,595 [ scc.merge] INFO Merged PRs: 2026-10-04 23:46:26,595 [ scc.merge] INFO - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-10-04 23:46:26,595 [ scc.merge] INFO 2026-10-04 23:46:26,595 [ scc.merge] INFO Repository: ome/rOMERO-gateway 2026-10-04 23:46:26,595 [ scc.merge] INFO Already up to date. 2026-10-04 23:46:26,595 [ scc.merge] INFO 2026-10-04 23:46:26,595 [ scc.merge] INFO 2026-10-04 23:46:26,595 [ scc.merge] INFO Repository: ome/scripts 2026-10-04 23:46:26,595 [ scc.merge] INFO Updating 4b4c755..5b4d768 2026-10-04 23:46:26,595 [ scc.merge] INFO Previously merged: 2026-10-04 23:46:26,595 [ scc.merge] INFO - PR 231 jburel 'Create Release ' 2026-10-04 23:46:26,595 [ scc.merge] INFO - PR 229 Rdornier 'Adding support for custom user label' 2026-10-04 23:46:26,595 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images' 2026-10-04 23:46:26,595 [ scc.merge] INFO - PR 230 Rdornier 'Import from csv fix' 2026-10-04 23:46:26,595 [ scc.merge] INFO - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows' 2026-10-04 23:46:26,595 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes' 2026-10-04 23:46:26,595 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests' 2026-10-04 23:46:26,595 [ scc.merge] INFO 2026-10-04 23:46:26,595 [ scc.merge] INFO Merged PRs: 2026-10-04 23:46:26,595 [ scc.merge] INFO - PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`' 2026-10-04 23:46:26,595 [ scc.merge] INFO 2026-10-04 23:46:26,595 [ scc.merge] DEBUG Cleaning remote branches created for merging 2026-10-04 23:46:26,595 [ scc.git] DEBUG Calling 'git remote' 2026-10-04 23:46:26,641 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/figure 2026-10-04 23:46:26,641 [ scc.git] DEBUG Calling 'git remote' 2026-10-04 23:46:26,656 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:46:26,656 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client 2026-10-04 23:46:26,656 [ scc.git] DEBUG Calling 'git remote' 2026-10-04 23:46:26,671 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:46:26,671 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate 2026-10-04 23:46:26,671 [ scc.git] DEBUG Calling 'git remote' 2026-10-04 23:46:26,686 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:46:26,686 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render 2026-10-04 23:46:26,686 [ scc.git] DEBUG Calling 'git remote' 2026-10-04 23:46:26,700 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:46:26,700 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr 2026-10-04 23:46:26,700 [ scc.git] DEBUG Calling 'git remote' 2026-10-04 23:46:26,716 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:46:26,716 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure 2026-10-04 23:46:26,716 [ scc.git] DEBUG Calling 'git remote' 2026-10-04 23:46:26,731 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:46:26,731 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage 2026-10-04 23:46:26,731 [ scc.git] DEBUG Calling 'git remote' 2026-10-04 23:46:26,747 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:46:26,747 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery 2026-10-04 23:46:26,747 [ scc.git] DEBUG Calling 'git remote' 2026-10-04 23:46:26,764 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:46:26,764 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer 2026-10-04 23:46:26,764 [ scc.git] DEBUG Calling 'git remote' 2026-10-04 23:46:26,781 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:46:26,782 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr 2026-10-04 23:46:26,782 [ scc.git] DEBUG Calling 'git remote' 2026-10-04 23:46:26,798 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:46:26,798 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata 2026-10-04 23:46:26,798 [ scc.git] DEBUG Calling 'git remote' 2026-10-04 23:46:26,813 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:46:26,814 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade 2026-10-04 23:46:26,814 [ scc.git] DEBUG Calling 'git remote' 2026-10-04 23:46:26,830 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:46:26,830 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools 2026-10-04 23:46:26,830 [ scc.git] DEBUG Calling 'git remote' 2026-10-04 23:46:26,845 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:46:26,846 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois 2026-10-04 23:46:26,846 [ scc.git] DEBUG Calling 'git remote' 2026-10-04 23:46:26,865 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:46:26,865 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup 2026-10-04 23:46:26,865 [ scc.git] DEBUG Calling 'git remote' 2026-10-04 23:46:26,881 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:46:26,881 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra 2026-10-04 23:46:26,881 [ scc.git] DEBUG Calling 'git remote' 2026-10-04 23:46:26,897 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:46:26,898 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload 2026-10-04 23:46:26,898 [ scc.git] DEBUG Calling 'git remote' 2026-10-04 23:46:26,914 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:46:26,914 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope 2026-10-04 23:46:26,914 [ scc.git] DEBUG Calling 'git remote' 2026-10-04 23:46:26,932 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:46:26,932 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr 2026-10-04 23:46:26,932 [ scc.git] DEBUG Calling 'git remote' 2026-10-04 23:46:26,950 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:46:26,951 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror 2026-10-04 23:46:26,951 [ scc.git] DEBUG Calling 'git remote' 2026-10-04 23:46:26,966 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:46:26,966 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest 2026-10-04 23:46:26,966 [ scc.git] DEBUG Calling 'git remote' 2026-10-04 23:46:26,981 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:46:26,981 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway 2026-10-04 23:46:26,981 [ scc.git] DEBUG Calling 'git remote' 2026-10-04 23:46:26,997 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-04 23:46:26,997 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts 2026-10-04 23:46:26,997 [ scc.git] DEBUG Calling 'git remote' 2026-10-04 23:46:27,012 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push Update component versions python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/figure/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/figure/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer. warnings.warn( WARNING: The wheel package is not available. WARNING: The wheel package is not available. /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer. warnings.warn( WARNING: The wheel package is not available. WARNING: The wheel package is not available. /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0' warnings.warn(tmpl.format(**locals())) /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0' warnings.warn(tmpl.format(**locals())) /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Updating omero-gateway from 5.10.0 to 5.11.1-SNAPSHOT grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Commit all component version changes Entering 'figure' Entering 'minimal-omero-client' Entering 'omero-cli-duplicate' Entering 'omero-cli-render' Entering 'omero-cli-zarr' Entering 'omero-figure' Entering 'omero-fpbioimage' Entering 'omero-gallery' Entering 'omero-iviewer' Entering 'omero-mapr' Entering 'omero-metadata' Entering 'omero-parade' Entering 'omero-prometheus-tools' Entering 'omero-rois' Entering 'omero-signup' Entering 'omero-test-infra' Entering 'omero-upload' Entering 'omero-virtual-microscope' Entering 'omero-web-zarr' Entering 'omero-weberror' Entering 'omero-webtest' Entering 'rOMERO-gateway' Entering 'scripts' Entering 'figure' HEAD detached from 3935875 nothing to commit, working tree clean Entering 'minimal-omero-client' [detached HEAD 9e5da57] Update component versions 1 file changed, 1 insertion(+), 1 deletion(-) Entering 'omero-cli-duplicate' HEAD detached from 4777ef8 nothing to commit, working tree clean Entering 'omero-cli-render' HEAD detached from ce6e13c nothing to commit, working tree clean Entering 'omero-cli-zarr' HEAD detached from 11d3587 Untracked files: (use "git add <file>..." to include in what will be committed) .eggs/ nothing added to commit but untracked files present (use "git add" to track) Entering 'omero-figure' HEAD detached from 9cc36cde nothing to commit, working tree clean Entering 'omero-fpbioimage' HEAD detached from 3b6c05a nothing to commit, working tree clean Entering 'omero-gallery' HEAD detached from 2a621da nothing to commit, working tree clean Entering 'omero-iviewer' HEAD detached from 7a798cee nothing to commit, working tree clean Entering 'omero-mapr' HEAD detached from 0a557da nothing to commit, working tree clean Entering 'omero-metadata' HEAD detached from 3cd120c nothing to commit, working tree clean Entering 'omero-parade' HEAD detached from fb5ae86 nothing to commit, working tree clean Entering 'omero-prometheus-tools' HEAD detached from eb47378 nothing to commit, working tree clean Entering 'omero-rois' HEAD detached from bdfeb5e nothing to commit, working tree clean Entering 'omero-signup' HEAD detached from be76813 nothing to commit, working tree clean Entering 'omero-test-infra' HEAD detached from cda3ec6 nothing to commit, working tree clean Entering 'omero-upload' HEAD detached from 100f6ae nothing to commit, working tree clean Entering 'omero-virtual-microscope' HEAD detached from deab817 nothing to commit, working tree clean Entering 'omero-web-zarr' HEAD detached from 8f3c313 nothing to commit, working tree clean Entering 'omero-weberror' HEAD detached from 70b01ed nothing to commit, working tree clean Entering 'omero-webtest' HEAD detached from 5bfef29 nothing to commit, working tree clean Entering 'rOMERO-gateway' HEAD detached from 7b5d64d nothing to commit, working tree clean Entering 'scripts' HEAD detached from 4b4c755 nothing to commit, working tree clean [detached HEAD ce635b9] Update component versions 1 file changed, 1 insertion(+), 1 deletion(-) Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 2026-10-04 23:47:40,528 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 2026-10-04 23:47:50,571 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 2026-10-04 23:47:53,219 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2026-10-04 23:47:58,313 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2026-10-04 23:49:03,353 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci [Pipeline] archiveArtifacts Archiving artifacts [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS