Started by upstream project "Trigger" build number 124 originally caused by: Started by timer [Pipeline] Start of Pipeline [Pipeline] node Running on testintegration in /home/omero/workspace/OMERO-plugins-push [Pipeline] { [Pipeline] library Loading library recursiveMerge@master Attempting to resolve master from remote references... > git --version # timeout=10 > git --version # 'git version 2.47.3' > git ls-remote -- https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Found match: refs/heads/master revision af267baf738bf563fa6d26d1f37a3717d679c59f The recommended git tool is: NONE No credentials specified > git rev-parse --resolve-git-dir /var/jenkins_home/jobs/OMERO-plugins-push/workspace@libs/e9d96de4efbb3e39a2ce24824e54985c7c2760a6ed46c5415ea0aa1fd1e18d41/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Fetching without tags Fetching upstream changes from https://github.com/ome/jenkins-library-recursivemerge.git > git --version # timeout=10 > git --version # 'git version 2.47.3' > git fetch --no-tags --force --progress -- https://github.com/ome/jenkins-library-recursivemerge.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Checking out Revision af267baf738bf563fa6d26d1f37a3717d679c59f (master) > git config core.sparsecheckout # timeout=10 > git checkout -f af267baf738bf563fa6d26d1f37a3717d679c59f # timeout=10 Commit message: "Merge pull request #19 from will-moore/readme" > git rev-list --no-walk af267baf738bf563fa6d26d1f37a3717d679c59f # timeout=10 [Pipeline] checkout The recommended git tool is: NONE No credentials specified Fetching changes from the remote Git repository > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-plugins-push/.git # timeout=10 > git config remote.origin.url https://github.com/ome/omero-plugins.git # timeout=10 Fetching upstream changes from https://github.com/ome/omero-plugins.git > git --version # timeout=10 > git --version # 'git version 2.52.0' > git fetch --tags --force --progress -- https://github.com/ome/omero-plugins.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Checking out Revision 6c8647e73bf88ae05d5ec656f70844a60f6b6e6c (refs/remotes/origin/master) > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 6c8647e73bf88ae05d5ec656f70844a60f6b6e6c # timeout=10 Commit message: "Merge pull request #434 from will-moore/figure" > git rev-list --no-walk 6c8647e73bf88ae05d5ec656f70844a60f6b6e6c # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -fdx # timeout=10 > git submodule foreach --recursive git reset --hard # timeout=10 > git submodule foreach --recursive git clean -fdx # timeout=10 > git remote # timeout=10 > git submodule init # timeout=10 > git submodule sync # timeout=10 > git config --get remote.origin.url # timeout=10 > git submodule init # timeout=10 > git config -f .gitmodules --get-regexp ^submodule\.(.+)\.url # timeout=10 > git config --get submodule.omero-figure.url # timeout=10 > git config -f .gitmodules --get submodule.omero-figure.path # timeout=10 > git config --get submodule.minimal-omero-client.url # timeout=10 > git config -f .gitmodules --get submodule.minimal-omero-client.path # timeout=10 > git config --get submodule.scripts.url # timeout=10 > git config -f .gitmodules --get submodule.scripts.path # timeout=10 > git config --get submodule.omero-test-infra.url # timeout=10 > git config -f .gitmodules --get submodule.omero-test-infra.path # timeout=10 > git config --get submodule.omero-prometheus-tools.url # timeout=10 > git config -f .gitmodules --get submodule.omero-prometheus-tools.path # timeout=10 > git config --get submodule.omero-parade.url # timeout=10 > git config -f .gitmodules --get submodule.omero-parade.path # timeout=10 > git config --get submodule.omero-mapr.url # timeout=10 > git config -f .gitmodules --get submodule.omero-mapr.path # timeout=10 > git config --get submodule.omero-fpbioimage.url # timeout=10 > git config -f .gitmodules --get submodule.omero-fpbioimage.path # timeout=10 > git config --get submodule.omero-iviewer.url # timeout=10 > git config -f .gitmodules --get submodule.omero-iviewer.path # timeout=10 > git config --get submodule.omero-gallery.url # timeout=10 > git config -f .gitmodules --get submodule.omero-gallery.path # timeout=10 > git config --get submodule.rOMERO-gateway.url # timeout=10 > git config -f .gitmodules --get submodule.rOMERO-gateway.path # timeout=10 > git config --get submodule.omero-weberror.url # timeout=10 > git config -f .gitmodules --get submodule.omero-weberror.path # timeout=10 > git config --get submodule.omero-cli-render.url # timeout=10 > git config -f .gitmodules --get submodule.omero-cli-render.path # timeout=10 > git config --get submodule.omero-cli-duplicate.url # timeout=10 > git config -f .gitmodules --get submodule.omero-cli-duplicate.path # timeout=10 > git config --get submodule.omero-metadata.url # timeout=10 > git config -f .gitmodules --get submodule.omero-metadata.path # timeout=10 > git config --get submodule.omero-webtest.url # timeout=10 > git config -f .gitmodules --get submodule.omero-webtest.path # timeout=10 > git config --get submodule.omero-upload.url # timeout=10 > git config -f .gitmodules --get submodule.omero-upload.path # timeout=10 > git config --get submodule.omero-virtual-microscope.url # timeout=10 > git config -f .gitmodules --get submodule.omero-virtual-microscope.path # timeout=10 > git config --get submodule.omero-rois.url # timeout=10 > git config -f .gitmodules --get submodule.omero-rois.path # timeout=10 > git config --get submodule.omero-signup.url # timeout=10 > git config -f .gitmodules --get submodule.omero-signup.path # timeout=10 > git config --get submodule.omero-web-zarr.url # timeout=10 > git config -f .gitmodules --get submodule.omero-web-zarr.path # timeout=10 > git config --get submodule.omero-cli-zarr.url # timeout=10 > git config -f .gitmodules --get submodule.omero-cli-zarr.path # timeout=10 > git config --get submodule.figure.url # timeout=10 > git config -f .gitmodules --get submodule.figure.path # timeout=10 > git submodule update --init --recursive omero-figure # timeout=10 > git submodule update --init --recursive minimal-omero-client # timeout=10 > git submodule update --init --recursive scripts # timeout=10 > git submodule update --init --recursive omero-test-infra # timeout=10 > git submodule update --init --recursive omero-prometheus-tools # timeout=10 > git submodule update --init --recursive omero-parade # timeout=10 > git submodule update --init --recursive omero-mapr # timeout=10 > git submodule update --init --recursive omero-fpbioimage # timeout=10 > git submodule update --init --recursive omero-iviewer # timeout=10 > git submodule update --init --recursive omero-gallery # timeout=10 > git submodule update --init --recursive rOMERO-gateway # timeout=10 > git submodule update --init --recursive omero-weberror # timeout=10 > git submodule update --init --recursive omero-cli-render # timeout=10 > git submodule update --init --recursive omero-cli-duplicate # timeout=10 > git submodule update --init --recursive omero-metadata # timeout=10 > git submodule update --init --recursive omero-webtest # timeout=10 > git submodule update --init --recursive omero-upload # timeout=10 > git submodule update --init --recursive omero-virtual-microscope # timeout=10 > git submodule update --init --recursive omero-rois # timeout=10 > git submodule update --init --recursive omero-signup # timeout=10 > git submodule update --init --recursive omero-web-zarr # timeout=10 [Pipeline] pwd [Pipeline] copyArtifacts Copied 1 artifact from "OMERO-build-push" build number 105 [Pipeline] sh + pushd build ~/workspace/OMERO-plugins-push/build ~/workspace/OMERO-plugins-push + tar -zxf - + curl -sfL https://github.com/ome/build-infra/archive/master.tar.gz + popd ~/workspace/OMERO-plugins-push + python3.11 -m venv build/venv > git submodule update --init --recursive omero-cli-zarr # timeout=10 > git submodule update --init --recursive figure # timeout=10 + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-plugins-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-plugins-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(venv) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + python3.11 -m pip install -U pip Requirement already satisfied: pip in ./build/venv/lib64/python3.11/site-packages (22.3.1) Collecting pip Using cached pip-26.2.1-py3-none-any.whl (1.8 MB) Installing collected packages: pip Attempting uninstall: pip Found existing installation: pip 22.3.1 Uninstalling pip-22.3.1: Successfully uninstalled pip-22.3.1 Successfully installed pip-26.2.1 + python3.11 -m pip install scc Collecting scc Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB) Collecting PyGithub>=1.54 (from scc) Using cached pygithub-2.10.0-py3-none-any.whl.metadata (3.9 kB) Collecting PyYAML>=5.1 (from scc) Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB) Collecting future (from scc) Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) Collecting ruamel.yaml (from scc) Using cached ruamel_yaml-0.19.1-py3-none-any.whl.metadata (16 kB) Collecting ruamel.yaml.jinja2 (from scc) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB) Collecting six (from scc) Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) Collecting urllib3<2 (from scc) Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB) Collecting yaclifw<0.3,>=0.2.0 (from scc) Using cached yaclifw-0.2.0-py3-none-any.whl Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc) Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl.metadata (10.0 kB) Collecting requests>=2.14.0 (from PyGithub>=1.54->scc) Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB) Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached pyjwt-2.15.1-py3-none-any.whl.metadata (3.5 kB) Collecting typing-extensions>=4.5.0 (from PyGithub>=1.54->scc) Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB) Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cryptography-50.0.2-cp311-abi3-manylinux_2_34_x86_64.whl.metadata (4.4 kB) Collecting cffi>=2.0.0 (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cffi-2.1.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (2.5 kB) Collecting pycparser (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached pycparser-3.11-py3-none-any.whl.metadata (8.2 kB) Collecting charset_normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached charset_normalizer-3.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (46 kB) Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached idna-3.20-py3-none-any.whl.metadata (7.2 kB) Collecting certifi>=2023.5.7 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached certifi-2026.7.22-py3-none-any.whl.metadata (2.5 kB) Using cached scc-0.20.0-py3-none-any.whl (48 kB) Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) Using cached pygithub-2.10.0-py3-none-any.whl (455 kB) Using cached pyjwt-2.15.1-py3-none-any.whl (33 kB) Using cached cryptography-50.0.2-cp311-abi3-manylinux_2_34_x86_64.whl (4.8 MB) Using cached cffi-2.1.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (217 kB) Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl (1.4 MB) Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) Using cached requests-2.34.2-py3-none-any.whl (73 kB) Using cached charset_normalizer-3.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (269 kB) Using cached idna-3.20-py3-none-any.whl (69 kB) Using cached certifi-2026.7.22-py3-none-any.whl (136 kB) Using cached typing_extensions-4.16.0-py3-none-any.whl (45 kB) Using cached future-1.0.0-py3-none-any.whl (491 kB) Using cached pycparser-3.11-py3-none-any.whl (51 kB) Using cached ruamel_yaml-0.19.1-py3-none-any.whl (118 kB) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB) Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) Installing collected packages: urllib3, typing-extensions, six, ruamel.yaml, PyYAML, pyjwt, pycparser, idna, future, charset_normalizer, certifi, yaclifw, ruamel.yaml.jinja2, requests, cffi, pynacl, cryptography, PyGithub, scc Successfully installed PyGithub-2.10.0 PyYAML-6.0.3 certifi-2026.7.22 cffi-2.1.1 charset_normalizer-3.5.2 cryptography-50.0.2 future-1.0.0 idna-3.20 pycparser-3.11 pyjwt-2.15.1 pynacl-1.6.2 requests-2.34.2 ruamel.yaml-0.19.1 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.17.0 typing-extensions-4.16.0 urllib3-1.26.20 yaclifw-0.2.0 [Pipeline] sh + export BASE_REPO=omero-plugins.git + BASE_REPO=omero-plugins.git + export BASE_BRANCH=master + BASE_BRANCH=master + export VERSION_LOG=/home/omero/workspace/OMERO-plugins-push/build/version.tsv + VERSION_LOG=/home/omero/workspace/OMERO-plugins-push/build/version.tsv + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-plugins-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-plugins-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(venv) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + '[' merge_ci '!=' null ']' + export PUSH_BRANCH=merge_ci + PUSH_BRANCH=merge_ci + '[' null '!=' null ']' + export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment' + STATUS=success-only + MERGE_OPTIONS='-vvv --no-ask --reset --comment' + bash build/build-infra-master/recursive-merge Merge base repository (no submodule updates) 2026-10-09 23:37:56,135 [ scc.config] DEBUG Found github.token 2026-10-09 23:37:56,136 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2026-10-09 23:37:56,415 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:37:56,878 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:37:57,322 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2026-10-09 23:37:57,323 [ scc.gh] DEBUG 5000 remaining from 5000 (Reset at 00:10 2026-10-09 23:37:57,323 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-10-09 23:37:57,334 [ scc.git] DEBUG Check current status 2026-10-09 23:37:57,334 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-09 23:37:57,365 [ scc.git] DEBUG 6c8647e Merge pull request #434 from will-moore/figure 2026-10-09 23:37:57,366 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-09 23:37:57,630 [ scc.git] DEBUG 393587512d75ac33d3e750a46847ab074bfb435f figure (heads/master) 2026-10-09 23:37:57,736 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master) 2026-10-09 23:37:57,832 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2026-10-09 23:37:57,905 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c) 2026-10-09 23:37:57,960 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587) 2026-10-09 23:37:58,070 [ scc.git] DEBUG fb316a7ee6ca8aa5bc8dc55dd0acfa88fe3ca228 omero-figure (v7.2.0-1-gfb316a7e) 2026-10-09 23:37:58,149 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2026-10-09 23:37:58,245 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2026-10-09 23:37:58,413 [ scc.git] DEBUG b4102d46958a805cacff0c7ccceb05ccff746309 omero-iviewer (v0.15.0-1-gb4102d46) 2026-10-09 23:37:58,508 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2026-10-09 23:37:58,590 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c) 2026-10-09 23:37:58,690 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2026-10-09 23:37:58,733 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2026-10-09 23:37:58,816 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2026-10-09 23:37:58,894 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2026-10-09 23:37:58,960 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6) 2026-10-09 23:37:59,000 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2026-10-09 23:37:59,081 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2026-10-09 23:37:59,162 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313) 2026-10-09 23:37:59,215 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2026-10-09 23:37:59,270 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2026-10-09 23:37:59,312 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2026-10-09 23:37:59,337 [ scc.git] DEBUG 312afbed633613e1f728a1fe9eaac096e54318e0 scripts (v5.8.3-1-g312afbe) 2026-10-09 23:37:59,346 [ scc.config] DEBUG Found remote.origin.url 2026-10-09 23:37:59,679 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins HTTP/1.1" 200 None 2026-10-09 23:38:00,170 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-10-09 23:38:00,667 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-10-09 23:38:01,122 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-10-09 23:38:01,592 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-10-09 23:38:01,593 [ scc.git] DEBUG Resetting... 2026-10-09 23:38:01,593 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2026-10-09 23:38:01,993 [ scc.git] DEBUG HEAD is now at 6c8647e Merge pull request #434 from will-moore/figure 2026-10-09 23:38:01,995 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2026-10-09 23:38:03,252 [ scc.git] DEBUG Check current status 2026-10-09 23:38:03,252 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-09 23:38:03,272 [ scc.git] DEBUG 6c8647e Merge pull request #434 from will-moore/figure 2026-10-09 23:38:03,273 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-09 23:38:03,499 [ scc.git] DEBUG 393587512d75ac33d3e750a46847ab074bfb435f figure (heads/master) 2026-10-09 23:38:03,581 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master) 2026-10-09 23:38:03,618 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2026-10-09 23:38:03,657 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c) 2026-10-09 23:38:03,698 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587) 2026-10-09 23:38:03,759 [ scc.git] DEBUG fb316a7ee6ca8aa5bc8dc55dd0acfa88fe3ca228 omero-figure (v7.2.0-1-gfb316a7e) 2026-10-09 23:38:03,794 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2026-10-09 23:38:03,826 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2026-10-09 23:38:03,901 [ scc.git] DEBUG b4102d46958a805cacff0c7ccceb05ccff746309 omero-iviewer (v0.15.0-1-gb4102d46) 2026-10-09 23:38:03,941 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2026-10-09 23:38:03,982 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c) 2026-10-09 23:38:04,019 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2026-10-09 23:38:04,052 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2026-10-09 23:38:04,084 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2026-10-09 23:38:04,118 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2026-10-09 23:38:04,153 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6) 2026-10-09 23:38:04,188 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2026-10-09 23:38:04,219 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2026-10-09 23:38:04,253 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313) 2026-10-09 23:38:04,300 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2026-10-09 23:38:04,379 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2026-10-09 23:38:04,440 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2026-10-09 23:38:04,476 [ scc.git] DEBUG 312afbed633613e1f728a1fe9eaac096e54318e0 scripts (v5.8.3-1-g312afbe) 2026-10-09 23:38:04,477 [ scc.merge] INFO Merging Pull Request(s) based on master 2026-10-09 23:38:04,477 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2026-10-09 23:38:04,477 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2026-10-09 23:38:04,477 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2026-10-09 23:38:04,477 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2026-10-09 23:38:04,477 [ scc.repo] DEBUG ## PRs found: 2026-10-09 23:38:04,801 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/pulls HTTP/1.1" 200 None 2026-10-09 23:38:05,328 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/433 HTTP/1.1" 200 None 2026-10-09 23:38:05,328 [ scc.repo] DEBUG # ... Include label: dependencies 2026-10-09 23:38:05,328 [ scc.repo] DEBUG - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2026-10-09 23:38:05,890 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/432 HTTP/1.1" 200 None 2026-10-09 23:38:05,890 [ scc.repo] DEBUG # ... Include label: dependencies 2026-10-09 23:38:05,891 [ scc.repo] DEBUG - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2026-10-09 23:38:06,408 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/429 HTTP/1.1" 200 None 2026-10-09 23:38:06,410 [ scc.repo] DEBUG # ... Include label: dependencies 2026-10-09 23:38:06,410 [ scc.repo] DEBUG - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2026-10-09 23:38:06,410 [ scc.repo] DEBUG ## Branches found: 2026-10-09 23:38:06,410 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:38:06,410 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:38:06,423 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-10-09 23:38:06,440 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-10-09 23:38:06,440 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-10-09 23:38:06,463 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-10-09 23:38:06,518 [ scc.git] DEBUG Already up to date. 2026-10-09 23:38:06,518 [ scc.git] DEBUG Calling 'git fetch origin pull/429/head' 2026-10-09 23:38:06,963 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-10-09 23:38:06,963 [ scc.git] DEBUG * branch refs/pull/429/head -> FETCH_HEAD 2026-10-09 23:38:06,992 [ scc.git] DEBUG Calling 'git fetch origin pull/432/head' 2026-10-09 23:38:07,407 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-10-09 23:38:07,407 [ scc.git] DEBUG * branch refs/pull/432/head -> FETCH_HEAD 2026-10-09 23:38:07,441 [ scc.git] DEBUG Calling 'git fetch origin pull/433/head' 2026-10-09 23:38:07,859 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-10-09 23:38:07,859 [ scc.git] DEBUG * branch refs/pull/433/head -> FETCH_HEAD 2026-10-09 23:38:07,887 [ scc.git] DEBUG ## Unique users: [] 2026-10-09 23:38:07,887 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:38:07,887 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:38:07,897 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2026-10-09 23:38:07,924 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:38:07,933 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 429 (Bump scripts from `312afbe` to `4b4c755`) 3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2026-10-09 23:38:08,814 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-09 23:38:08,905 [ scc.git] DEBUG scripts | 2 +- 2026-10-09 23:38:08,905 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-10-09 23:38:09,107 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:38:09,107 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25bf90a85a7e0945e652f9d78050c8c4860acb51' 2026-10-09 23:38:09,145 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:38:09,156 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 432 (Bump omero-figure from `fb316a7` to `9cc36cd`) 25bf90a85a7e0945e652f9d78050c8c4860acb51' 2026-10-09 23:38:09,965 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-09 23:38:10,033 [ scc.git] DEBUG omero-figure | 2 +- 2026-10-09 23:38:10,033 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-10-09 23:38:10,226 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:38:10,226 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6fd5dc72efc90d7f749b332dba3f903414852d74' 2026-10-09 23:38:10,263 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:38:10,276 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 433 (Bump omero-iviewer from `b4102d4` to `7a798ce`) 6fd5dc72efc90d7f749b332dba3f903414852d74' 2026-10-09 23:38:10,957 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-09 23:38:11,012 [ scc.git] DEBUG omero-iviewer | 2 +- 2026-10-09 23:38:11,012 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-10-09 23:38:11,210 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:38:11,211 [ scc.git] DEBUG Calling 'git submodule update' 2026-10-09 23:38:12,134 [ scc.git] DEBUG Submodule path 'omero-figure': checked out '9cc36cde05bde4def7b62b07c2e9ae5f66712e96' 2026-10-09 23:38:13,205 [ scc.git] DEBUG Submodule path 'omero-iviewer': checked out '7a798ceeb3926d049d73788555fb63269a071052' 2026-10-09 23:38:13,516 [ scc.git] DEBUG Submodule path 'scripts': checked out '4b4c755af4ccf8a5e709548d1f8415fab48a4867' 2026-10-09 23:38:13,518 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:38:13,518 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:38:13,529 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-10-09 23:38:16,644 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f84ad7c3e90> has no local changes 2026-10-09 23:38:16,644 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone Repository: ome/omero-plugins Already up to date. Merged PRs: - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' Generated by OMERO-plugins-push#106 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/106/)' 2026-10-09 23:38:18,177 [ scc.git] DEBUG [detached HEAD ddbdafa] merge master -Dorg -Snone 2026-10-09 23:38:18,179 [ scc.merge] INFO Repository: ome/omero-plugins 2026-10-09 23:38:18,179 [ scc.merge] INFO Already up to date. 2026-10-09 23:38:18,179 [ scc.merge] INFO 2026-10-09 23:38:18,179 [ scc.merge] INFO Merged PRs: 2026-10-09 23:38:18,179 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2026-10-09 23:38:18,179 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2026-10-09 23:38:18,179 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2026-10-09 23:38:18,179 [ scc.merge] INFO 2026-10-09 23:38:18,179 [ scc.merge] DEBUG Cleaning remote branches created for merging 2026-10-09 23:38:18,179 [ scc.git] DEBUG Calling 'git remote' Synchronizing submodule url for 'figure' Synchronizing submodule url for 'minimal-omero-client' Synchronizing submodule url for 'omero-cli-duplicate' Synchronizing submodule url for 'omero-cli-render' Synchronizing submodule url for 'omero-cli-zarr' Synchronizing submodule url for 'omero-figure' Synchronizing submodule url for 'omero-fpbioimage' Synchronizing submodule url for 'omero-gallery' Synchronizing submodule url for 'omero-iviewer' Synchronizing submodule url for 'omero-mapr' Synchronizing submodule url for 'omero-metadata' Synchronizing submodule url for 'omero-parade' Synchronizing submodule url for 'omero-prometheus-tools' Synchronizing submodule url for 'omero-rois' Synchronizing submodule url for 'omero-signup' Synchronizing submodule url for 'omero-test-infra' Synchronizing submodule url for 'omero-upload' Synchronizing submodule url for 'omero-virtual-microscope' Synchronizing submodule url for 'omero-web-zarr' Synchronizing submodule url for 'omero-weberror' Synchronizing submodule url for 'omero-webtest' Synchronizing submodule url for 'rOMERO-gateway' Synchronizing submodule url for 'scripts' Submodule path 'figure': checked out 'e92b4e84a8feb8ad1dd4a68318c8dc0f6c0e0ef1' Submodule path 'omero-cli-render': checked out '68b73035cf2ab21ddd92022b80bda0966547b3c8' Submodule path 'omero-cli-zarr': checked out 'd5f88d80a2b1a3eacda64b591e1cfe6df4f51a82' Submodule path 'omero-figure': checked out '3195c3df4e7bf2507d9c942d5d8c9a8566498147' Submodule path 'omero-iviewer': checked out '0a836211ba48a84aff07486e3d18cfe9c5f52e76' Submodule path 'omero-metadata': checked out '6a653e49e3589ccb463166506896639f6f0a5a2b' Submodule path 'omero-rois': checked out 'fc9ff96901ce7b92e3ba51327ba7ba64fff76959' Submodule path 'omero-test-infra': checked out 'c8a0015b0ce72ee0a49e6968af33de10ea00bc77' Submodule path 'omero-virtual-microscope': checked out '160d894dfb61e69618903425b340c7888f3a934f' Submodule path 'omero-web-zarr': checked out '4e1e685dff22136abfd2626f6fd6eaf985aba368' Submodule path 'scripts': checked out '5b4d76862a7141257c9ff221ff7f009f7ec416c0' Merge all submodules using repository configuration: base-branch: master submodules: scripts: base-branch: develop omero-web-zarr: base-branch: main 2026-10-09 23:38:41,376 [ scc.config] DEBUG Found github.token 2026-10-09 23:38:41,378 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2026-10-09 23:38:41,625 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:38:42,069 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:38:42,492 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2026-10-09 23:38:42,493 [ scc.gh] DEBUG 5000 remaining from 5000 (Reset at 00:10 2026-10-09 23:38:42,493 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-10-09 23:38:42,505 [ scc.git] DEBUG Check current status 2026-10-09 23:38:42,505 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-09 23:38:42,525 [ scc.git] DEBUG ddbdafa merge master -Dorg -Snone 2026-10-09 23:38:42,526 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-09 23:38:42,756 [ scc.git] DEBUG +e92b4e84a8feb8ad1dd4a68318c8dc0f6c0e0ef1 figure (remotes/origin/HEAD) 2026-10-09 23:38:42,842 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master) 2026-10-09 23:38:42,877 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2026-10-09 23:38:42,913 [ scc.git] DEBUG +68b73035cf2ab21ddd92022b80bda0966547b3c8 omero-cli-render (v0.8.1-28-g68b7303) 2026-10-09 23:38:42,959 [ scc.git] DEBUG +d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82 omero-cli-zarr (v0.9.0-1-gd5f88d8) 2026-10-09 23:38:43,024 [ scc.git] DEBUG +3195c3df4e7bf2507d9c942d5d8c9a8566498147 omero-figure (v8.0.1-1-g3195c3df) 2026-10-09 23:38:43,056 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2026-10-09 23:38:43,089 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2026-10-09 23:38:43,164 [ scc.git] DEBUG +0a836211ba48a84aff07486e3d18cfe9c5f52e76 omero-iviewer (v0.19.1-1-g0a836211) 2026-10-09 23:38:43,199 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2026-10-09 23:38:43,252 [ scc.git] DEBUG +6a653e49e3589ccb463166506896639f6f0a5a2b omero-metadata (v0.14.0-2-g6a653e4) 2026-10-09 23:38:43,289 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2026-10-09 23:38:43,321 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2026-10-09 23:38:43,356 [ scc.git] DEBUG +fc9ff96901ce7b92e3ba51327ba7ba64fff76959 omero-rois (v0.4.1-1-gfc9ff96) 2026-10-09 23:38:43,395 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2026-10-09 23:38:43,427 [ scc.git] DEBUG +c8a0015b0ce72ee0a49e6968af33de10ea00bc77 omero-test-infra (v0.6.3-67-gc8a0015) 2026-10-09 23:38:43,460 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2026-10-09 23:38:43,492 [ scc.git] DEBUG +160d894dfb61e69618903425b340c7888f3a934f omero-virtual-microscope (v1.1.1-12-g160d894) 2026-10-09 23:38:43,529 [ scc.git] DEBUG +4e1e685dff22136abfd2626f6fd6eaf985aba368 omero-web-zarr (v0.1.1-13-g4e1e685) 2026-10-09 23:38:43,562 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2026-10-09 23:38:43,591 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2026-10-09 23:38:43,623 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2026-10-09 23:38:43,645 [ scc.git] DEBUG +5b4d76862a7141257c9ff221ff7f009f7ec416c0 scripts (v5.10.0-1-g5b4d768) 2026-10-09 23:38:43,657 [ scc.config] DEBUG Found remote.origin.url 2026-10-09 23:38:43,657 [ scc.git] DEBUG Reading repository configuration from repositories.yml 2026-10-09 23:38:43,660 [ scc.git] DEBUG Repository configuration: base-branch: master submodules: omero-web-zarr: base-branch: main scripts: base-branch: develop 2026-10-09 23:38:44,010 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins HTTP/1.1" 200 None 2026-10-09 23:38:44,508 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-10-09 23:38:44,974 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-10-09 23:38:45,427 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-10-09 23:38:45,904 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-10-09 23:38:45,905 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-09 23:38:46,088 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/figure 2026-10-09 23:38:46,088 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-10-09 23:38:46,100 [ scc.git] DEBUG Check current status 2026-10-09 23:38:46,100 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-09 23:38:46,128 [ scc.git] DEBUG e92b4e8 Merge pull request #20 from will-moore/hide_export_dropdown_unless_omero 2026-10-09 23:38:46,129 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-09 23:38:46,249 [ scc.config] DEBUG Found remote.origin.url 2026-10-09 23:38:46,563 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure HTTP/1.1" 200 None 2026-10-09 23:38:47,059 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-10-09 23:38:47,528 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-10-09 23:38:47,992 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-10-09 23:38:48,454 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-10-09 23:38:48,455 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-09 23:38:48,577 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:38:48,578 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client 2026-10-09 23:38:48,578 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-10-09 23:38:48,589 [ scc.git] DEBUG Check current status 2026-10-09 23:38:48,589 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-09 23:38:48,621 [ scc.git] DEBUG ca8c2ea Merge pull request #67 from jburel/gateway_5_10_0 2026-10-09 23:38:48,622 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-09 23:38:48,742 [ scc.config] DEBUG Found remote.origin.url 2026-10-09 23:38:49,056 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/minimal-omero-client HTTP/1.1" 200 None 2026-10-09 23:38:49,576 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-10-09 23:38:50,058 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-10-09 23:38:50,521 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-10-09 23:38:50,982 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-10-09 23:38:50,984 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-09 23:38:51,091 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:38:51,092 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate 2026-10-09 23:38:51,092 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-10-09 23:38:51,104 [ scc.git] DEBUG Check current status 2026-10-09 23:38:51,104 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-09 23:38:51,124 [ scc.git] DEBUG 4777ef8 Merge pull request #27 from jburel/build 2026-10-09 23:38:51,125 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-09 23:38:51,234 [ scc.config] DEBUG Found remote.origin.url 2026-10-09 23:38:51,536 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate HTTP/1.1" 200 None 2026-10-09 23:38:52,042 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-10-09 23:38:52,505 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-10-09 23:38:52,979 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-10-09 23:38:53,423 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-10-09 23:38:53,424 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-09 23:38:53,535 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:38:53,536 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render 2026-10-09 23:38:53,536 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-10-09 23:38:53,548 [ scc.git] DEBUG Check current status 2026-10-09 23:38:53,548 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-09 23:38:53,567 [ scc.git] DEBUG 68b7303 Merge pull request #74 from jburel/changelog2ghrelease 2026-10-09 23:38:53,567 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-09 23:38:53,689 [ scc.config] DEBUG Found remote.origin.url 2026-10-09 23:38:53,996 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render HTTP/1.1" 200 None 2026-10-09 23:38:54,486 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-10-09 23:38:54,943 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-10-09 23:38:55,417 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-10-09 23:38:55,921 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-10-09 23:38:55,922 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-09 23:38:56,035 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:38:56,036 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr 2026-10-09 23:38:56,036 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-10-09 23:38:56,050 [ scc.git] DEBUG Check current status 2026-10-09 23:38:56,050 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-09 23:38:56,094 [ scc.git] DEBUG d5f88d8 Bump version: 0.9.0 → 0.9.1.dev0 2026-10-09 23:38:56,095 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-09 23:38:56,219 [ scc.config] DEBUG Found remote.origin.url 2026-10-09 23:38:56,524 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr HTTP/1.1" 200 None 2026-10-09 23:38:57,085 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-10-09 23:38:57,546 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-10-09 23:38:58,028 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-10-09 23:38:58,485 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-10-09 23:38:58,487 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-09 23:38:58,597 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:38:58,598 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure 2026-10-09 23:38:58,598 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-10-09 23:38:58,613 [ scc.git] DEBUG Check current status 2026-10-09 23:38:58,613 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-09 23:38:58,649 [ scc.git] DEBUG 3195c3df Bump version: 8.0.1 → 8.0.2.dev0 2026-10-09 23:38:58,652 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-09 23:38:58,775 [ scc.config] DEBUG Found remote.origin.url 2026-10-09 23:38:59,077 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure HTTP/1.1" 200 None 2026-10-09 23:38:59,591 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-10-09 23:39:00,061 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-10-09 23:39:00,542 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-10-09 23:39:01,012 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-10-09 23:39:01,014 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-09 23:39:01,117 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:39:01,117 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage 2026-10-09 23:39:01,117 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-10-09 23:39:01,129 [ scc.git] DEBUG Check current status 2026-10-09 23:39:01,129 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-09 23:39:01,145 [ scc.git] DEBUG 3b6c05a Merge pull request #30 from jburel/build 2026-10-09 23:39:01,146 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-09 23:39:01,276 [ scc.config] DEBUG Found remote.origin.url 2026-10-09 23:39:01,614 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage HTTP/1.1" 200 None 2026-10-09 23:39:02,125 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-10-09 23:39:02,582 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-10-09 23:39:03,054 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-10-09 23:39:03,532 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-10-09 23:39:03,534 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-09 23:39:03,631 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:39:03,631 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery 2026-10-09 23:39:03,631 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-10-09 23:39:03,642 [ scc.git] DEBUG Check current status 2026-10-09 23:39:03,642 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-09 23:39:03,660 [ scc.git] DEBUG 2a621da Merge pull request #112 from jburel/build 2026-10-09 23:39:03,662 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-09 23:39:03,774 [ scc.config] DEBUG Found remote.origin.url 2026-10-09 23:39:04,067 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery HTTP/1.1" 200 None 2026-10-09 23:39:04,576 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-10-09 23:39:05,039 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-10-09 23:39:05,501 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-10-09 23:39:05,947 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-10-09 23:39:05,948 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-09 23:39:06,061 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:39:06,062 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer 2026-10-09 23:39:06,062 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-10-09 23:39:06,076 [ scc.git] DEBUG Check current status 2026-10-09 23:39:06,076 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-09 23:39:06,108 [ scc.git] DEBUG 0a836211 Add dev to version 2026-10-09 23:39:06,111 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-09 23:39:06,254 [ scc.config] DEBUG Found remote.origin.url 2026-10-09 23:39:06,553 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer HTTP/1.1" 200 None 2026-10-09 23:39:07,050 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-10-09 23:39:07,554 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-10-09 23:39:08,004 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-10-09 23:39:08,451 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-10-09 23:39:08,453 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-09 23:39:08,577 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:39:08,579 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr 2026-10-09 23:39:08,579 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-10-09 23:39:08,592 [ scc.git] DEBUG Check current status 2026-10-09 23:39:08,592 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-09 23:39:08,611 [ scc.git] DEBUG 0a557da Bump version: 0.5.3 → 0.5.4.dev0 2026-10-09 23:39:08,612 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-09 23:39:08,726 [ scc.config] DEBUG Found remote.origin.url 2026-10-09 23:39:09,038 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr HTTP/1.1" 200 None 2026-10-09 23:39:09,551 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-10-09 23:39:10,002 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-10-09 23:39:10,449 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-10-09 23:39:10,893 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-10-09 23:39:10,894 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-09 23:39:11,009 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:39:11,010 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata 2026-10-09 23:39:11,010 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-10-09 23:39:11,039 [ scc.git] DEBUG Check current status 2026-10-09 23:39:11,039 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-09 23:39:11,063 [ scc.git] DEBUG 6a653e4 Fix workflow permission indentation 2026-10-09 23:39:11,064 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-09 23:39:11,167 [ scc.config] DEBUG Found remote.origin.url 2026-10-09 23:39:11,472 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata HTTP/1.1" 200 None 2026-10-09 23:39:11,964 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-10-09 23:39:12,438 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-10-09 23:39:12,899 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-10-09 23:39:13,379 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-10-09 23:39:13,380 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-09 23:39:13,518 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:39:13,519 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade 2026-10-09 23:39:13,519 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-10-09 23:39:13,533 [ scc.git] DEBUG Check current status 2026-10-09 23:39:13,533 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-09 23:39:13,556 [ scc.git] DEBUG fb5ae86 Merge pull request #133 from jburel/build 2026-10-09 23:39:13,557 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-09 23:39:13,676 [ scc.config] DEBUG Found remote.origin.url 2026-10-09 23:39:13,989 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade HTTP/1.1" 200 None 2026-10-09 23:39:14,490 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-10-09 23:39:14,929 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-10-09 23:39:15,376 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-10-09 23:39:15,877 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-10-09 23:39:15,878 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-09 23:39:15,987 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:39:15,988 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools 2026-10-09 23:39:15,988 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-10-09 23:39:16,001 [ scc.git] DEBUG Check current status 2026-10-09 23:39:16,001 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-09 23:39:16,021 [ scc.git] DEBUG eb47378 Merge pull request #15 from jburel/build 2026-10-09 23:39:16,022 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-09 23:39:16,159 [ scc.config] DEBUG Found remote.origin.url 2026-10-09 23:39:16,500 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools HTTP/1.1" 200 None 2026-10-09 23:39:16,987 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-10-09 23:39:17,448 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-10-09 23:39:17,916 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-10-09 23:39:18,376 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-10-09 23:39:18,378 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-09 23:39:18,506 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:39:18,507 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois 2026-10-09 23:39:18,507 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-10-09 23:39:18,522 [ scc.git] DEBUG Check current status 2026-10-09 23:39:18,522 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-09 23:39:18,542 [ scc.git] DEBUG fc9ff96 Bump version: 0.4.1 → 0.4.2.dev0 2026-10-09 23:39:18,543 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-09 23:39:18,681 [ scc.config] DEBUG Found remote.origin.url 2026-10-09 23:39:18,975 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois HTTP/1.1" 200 None 2026-10-09 23:39:19,478 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-10-09 23:39:19,951 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-10-09 23:39:20,396 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-10-09 23:39:20,851 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-10-09 23:39:20,852 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-09 23:39:20,987 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:39:20,988 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup 2026-10-09 23:39:20,988 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-10-09 23:39:21,003 [ scc.git] DEBUG Check current status 2026-10-09 23:39:21,004 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-09 23:39:21,025 [ scc.git] DEBUG be76813 Merge pull request #21 from jburel/build 2026-10-09 23:39:21,026 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-09 23:39:21,159 [ scc.config] DEBUG Found remote.origin.url 2026-10-09 23:39:21,472 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup HTTP/1.1" 200 None 2026-10-09 23:39:21,972 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-10-09 23:39:22,440 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-10-09 23:39:22,883 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-10-09 23:39:23,326 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-10-09 23:39:23,328 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-09 23:39:23,446 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:39:23,447 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra 2026-10-09 23:39:23,447 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-10-09 23:39:23,461 [ scc.git] DEBUG Check current status 2026-10-09 23:39:23,461 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-09 23:39:23,481 [ scc.git] DEBUG c8a0015 Merge pull request #84 from joshmoore/fix-port-readme 2026-10-09 23:39:23,482 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-09 23:39:23,609 [ scc.config] DEBUG Found remote.origin.url 2026-10-09 23:39:23,803 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-test-infra HTTP/1.1" 301 198 Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 2026-10-09 23:39:23,805 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 2026-10-09 23:39:24,175 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/111908919 HTTP/1.1" 200 None 2026-10-09 23:39:24,672 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-10-09 23:39:25,160 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-10-09 23:39:25,628 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-10-09 23:39:26,087 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-10-09 23:39:26,089 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-09 23:39:26,202 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:39:26,203 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload 2026-10-09 23:39:26,203 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-10-09 23:39:26,214 [ scc.git] DEBUG Check current status 2026-10-09 23:39:26,214 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-09 23:39:26,234 [ scc.git] DEBUG 100f6ae Merge pull request #13 from jburel/build 2026-10-09 23:39:26,235 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-09 23:39:26,353 [ scc.config] DEBUG Found remote.origin.url 2026-10-09 23:39:26,659 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload HTTP/1.1" 200 None 2026-10-09 23:39:27,152 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-10-09 23:39:27,618 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-10-09 23:39:28,067 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-10-09 23:39:28,530 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-10-09 23:39:28,531 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-09 23:39:28,646 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:39:28,646 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope 2026-10-09 23:39:28,647 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-10-09 23:39:28,660 [ scc.git] DEBUG Check current status 2026-10-09 23:39:28,660 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-09 23:39:28,680 [ scc.git] DEBUG 160d894 Fix display of code 2026-10-09 23:39:28,682 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-09 23:39:28,798 [ scc.config] DEBUG Found remote.origin.url 2026-10-09 23:39:29,098 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope HTTP/1.1" 200 None 2026-10-09 23:39:29,586 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-10-09 23:39:30,042 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-10-09 23:39:30,504 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-10-09 23:39:30,946 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-10-09 23:39:30,947 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-09 23:39:31,056 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:39:31,056 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr 2026-10-09 23:39:31,057 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-10-09 23:39:31,070 [ scc.git] DEBUG Check current status 2026-10-09 23:39:31,070 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-09 23:39:31,088 [ scc.git] DEBUG 4e1e685 Merge pull request #23 from lubianat/patch-1 2026-10-09 23:39:31,089 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-09 23:39:31,201 [ scc.config] DEBUG Found remote.origin.url 2026-10-09 23:39:31,201 [ scc.git] DEBUG Repository configuration: base-branch: main 2026-10-09 23:39:31,527 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr HTTP/1.1" 200 None 2026-10-09 23:39:32,023 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-10-09 23:39:32,471 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-10-09 23:39:32,931 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-10-09 23:39:33,422 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-10-09 23:39:33,423 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-09 23:39:33,527 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:39:33,528 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror 2026-10-09 23:39:33,528 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-10-09 23:39:33,543 [ scc.git] DEBUG Check current status 2026-10-09 23:39:33,543 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-09 23:39:33,563 [ scc.git] DEBUG 70b01ed Merge pull request #24 from jburel/build 2026-10-09 23:39:33,564 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-09 23:39:33,694 [ scc.config] DEBUG Found remote.origin.url 2026-10-09 23:39:33,901 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-weberror HTTP/1.1" 301 197 Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 2026-10-09 23:39:33,902 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 2026-10-09 23:39:34,202 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/38373425 HTTP/1.1" 200 None 2026-10-09 23:39:34,690 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-10-09 23:39:35,148 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-10-09 23:39:35,608 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-10-09 23:39:36,053 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-10-09 23:39:36,054 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-09 23:39:36,179 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:39:36,180 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest 2026-10-09 23:39:36,180 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-10-09 23:39:36,194 [ scc.git] DEBUG Check current status 2026-10-09 23:39:36,194 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-09 23:39:36,215 [ scc.git] DEBUG 5bfef29 Merge pull request #36 from jburel/build 2026-10-09 23:39:36,217 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-09 23:39:36,347 [ scc.config] DEBUG Found remote.origin.url 2026-10-09 23:39:36,784 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-webtest HTTP/1.1" 301 197 Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 2026-10-09 23:39:36,785 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 2026-10-09 23:39:37,106 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/25970383 HTTP/1.1" 200 None 2026-10-09 23:39:37,594 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-10-09 23:39:38,073 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-10-09 23:39:38,522 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-10-09 23:39:38,964 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-10-09 23:39:38,965 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-09 23:39:39,086 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:39:39,086 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway 2026-10-09 23:39:39,087 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-10-09 23:39:39,106 [ scc.git] DEBUG Check current status 2026-10-09 23:39:39,106 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-09 23:39:39,128 [ scc.git] DEBUG 7b5d64d Merge pull request #106 from dominikl/add_examples_2 2026-10-09 23:39:39,129 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-09 23:39:39,260 [ scc.config] DEBUG Found remote.origin.url 2026-10-09 23:39:39,609 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway HTTP/1.1" 200 None 2026-10-09 23:39:40,091 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-10-09 23:39:40,550 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-10-09 23:39:41,023 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-10-09 23:39:41,501 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-10-09 23:39:41,503 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-09 23:39:41,623 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:39:41,624 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts 2026-10-09 23:39:41,624 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-10-09 23:39:41,640 [ scc.git] DEBUG Check current status 2026-10-09 23:39:41,640 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-09 23:39:41,659 [ scc.git] DEBUG 5b4d768 Bump version: 5.10.0 → 5.10.1.dev0 2026-10-09 23:39:41,660 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-09 23:39:41,782 [ scc.config] DEBUG Found remote.origin.url 2026-10-09 23:39:41,782 [ scc.git] DEBUG Repository configuration: base-branch: develop 2026-10-09 23:39:41,991 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/scripts HTTP/1.1" 301 196 Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2026-10-09 23:39:41,992 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2026-10-09 23:39:42,280 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/4865545 HTTP/1.1" 200 None 2026-10-09 23:39:42,813 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-10-09 23:39:43,265 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-10-09 23:39:43,718 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-10-09 23:39:44,169 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-10-09 23:39:44,171 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-09 23:39:44,285 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:39:44,285 [ scc.git] DEBUG Resetting... 2026-10-09 23:39:44,285 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2026-10-09 23:39:44,634 [ scc.git] DEBUG HEAD is now at ddbdafa merge master -Dorg -Snone 2026-10-09 23:39:44,635 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2026-10-09 23:39:45,170 [ scc.git] DEBUG Submodule path 'figure': checked out '393587512d75ac33d3e750a46847ab074bfb435f' 2026-10-09 23:39:45,488 [ scc.git] DEBUG Submodule path 'omero-cli-render': checked out 'ce6e13cfea3157cab0d00fde40f6cc8158946264' 2026-10-09 23:39:45,977 [ scc.git] DEBUG Submodule path 'omero-cli-zarr': checked out '11d35873542022d9638ede115d0dfab4652f8e62' 2026-10-09 23:39:47,371 [ scc.git] DEBUG Submodule path 'omero-figure': checked out '9cc36cde05bde4def7b62b07c2e9ae5f66712e96' 2026-10-09 23:39:48,480 [ scc.git] DEBUG Submodule path 'omero-iviewer': checked out '7a798ceeb3926d049d73788555fb63269a071052' 2026-10-09 23:39:48,790 [ scc.git] DEBUG Submodule path 'omero-metadata': checked out '3cd120cf6f10f71421a4db91fa87baba865c7997' 2026-10-09 23:39:49,119 [ scc.git] DEBUG Submodule path 'omero-rois': checked out 'bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9' 2026-10-09 23:39:49,351 [ scc.git] DEBUG Submodule path 'omero-test-infra': checked out 'cda3ec65052d6933052c8683d080677c6c33dc73' 2026-10-09 23:39:49,645 [ scc.git] DEBUG Submodule path 'omero-virtual-microscope': checked out 'deab81790f403bef598915b89b5300258b44a743' 2026-10-09 23:39:49,925 [ scc.git] DEBUG Submodule path 'omero-web-zarr': checked out '8f3c31388de8a7c44f18a6f0e20ea41d35fae041' 2026-10-09 23:39:50,562 [ scc.git] DEBUG Submodule path 'scripts': checked out '4b4c755af4ccf8a5e709548d1f8415fab48a4867' 2026-10-09 23:39:50,589 [ scc.git] DEBUG Check current status 2026-10-09 23:39:50,589 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-10-09 23:39:50,612 [ scc.git] DEBUG ddbdafa merge master -Dorg -Snone 2026-10-09 23:39:50,613 [ scc.git] DEBUG Calling 'git submodule status' 2026-10-09 23:39:50,907 [ scc.git] DEBUG 393587512d75ac33d3e750a46847ab074bfb435f figure (heads/master) 2026-10-09 23:39:51,063 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master) 2026-10-09 23:39:51,151 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2026-10-09 23:39:51,221 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c) 2026-10-09 23:39:51,271 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587) 2026-10-09 23:39:51,344 [ scc.git] DEBUG 9cc36cde05bde4def7b62b07c2e9ae5f66712e96 omero-figure (v7.2.1-3-g9cc36cde) 2026-10-09 23:39:51,385 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2026-10-09 23:39:51,422 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2026-10-09 23:39:51,510 [ scc.git] DEBUG 7a798ceeb3926d049d73788555fb63269a071052 omero-iviewer (v0.16.0-14-g7a798cee) 2026-10-09 23:39:51,549 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2026-10-09 23:39:51,595 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c) 2026-10-09 23:39:51,639 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2026-10-09 23:39:51,679 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2026-10-09 23:39:51,721 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2026-10-09 23:39:51,761 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2026-10-09 23:39:51,802 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6) 2026-10-09 23:39:51,838 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2026-10-09 23:39:51,876 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2026-10-09 23:39:51,913 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313) 2026-10-09 23:39:51,953 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2026-10-09 23:39:51,990 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2026-10-09 23:39:52,029 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2026-10-09 23:39:52,051 [ scc.git] DEBUG 4b4c755af4ccf8a5e709548d1f8415fab48a4867 scripts (v5.9.0-1-g4b4c755) 2026-10-09 23:39:52,052 [ scc.merge] INFO Merging Pull Request(s) based on master 2026-10-09 23:39:52,052 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2026-10-09 23:39:52,052 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2026-10-09 23:39:52,053 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2026-10-09 23:39:52,053 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2026-10-09 23:39:52,053 [ scc.merge] INFO Excluding Pull Request(s) without successful status 2026-10-09 23:39:52,053 [ scc.repo] DEBUG ## PRs found: 2026-10-09 23:39:52,376 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/pulls HTTP/1.1" 200 None 2026-10-09 23:39:52,888 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/433 HTTP/1.1" 200 None 2026-10-09 23:39:52,889 [ scc.repo] DEBUG # ... Include label: dependencies 2026-10-09 23:39:53,600 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74?page=1 HTTP/1.1" 200 None 2026-10-09 23:39:54,149 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-09 23:39:54,647 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74?page=1 HTTP/1.1" 200 None 2026-10-09 23:39:55,120 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/6fd5dc72efc90d7f749b332dba3f903414852d74?per_page=1 HTTP/1.1" 200 2 2026-10-09 23:39:55,121 [ scc.repo] DEBUG - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2026-10-09 23:39:55,640 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/432 HTTP/1.1" 200 None 2026-10-09 23:39:55,640 [ scc.repo] DEBUG # ... Include label: dependencies 2026-10-09 23:39:56,248 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51?page=1 HTTP/1.1" 200 None 2026-10-09 23:39:56,917 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-09 23:39:57,417 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51?page=1 HTTP/1.1" 200 None 2026-10-09 23:39:57,877 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/25bf90a85a7e0945e652f9d78050c8c4860acb51?per_page=1 HTTP/1.1" 200 2 2026-10-09 23:39:57,877 [ scc.repo] DEBUG - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2026-10-09 23:39:58,401 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/429 HTTP/1.1" 200 None 2026-10-09 23:39:58,402 [ scc.repo] DEBUG # ... Include label: dependencies 2026-10-09 23:39:59,013 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2?page=1 HTTP/1.1" 200 None 2026-10-09 23:39:59,503 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-09 23:40:00,058 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2?page=1 HTTP/1.1" 200 None 2026-10-09 23:40:00,520 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/3062fb487d55aef3602ecee795b63ccb73d1f8e2?per_page=1 HTTP/1.1" 200 2 2026-10-09 23:40:00,521 [ scc.repo] DEBUG - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2026-10-09 23:40:00,521 [ scc.repo] DEBUG ## Branches found: 2026-10-09 23:40:00,521 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:40:00,521 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:40:00,532 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-10-09 23:40:00,547 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-10-09 23:40:00,547 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-10-09 23:40:00,571 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-10-09 23:40:00,628 [ scc.git] DEBUG Already up to date. 2026-10-09 23:40:00,628 [ scc.git] DEBUG Calling 'git fetch origin pull/429/head' 2026-10-09 23:40:01,162 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-10-09 23:40:01,163 [ scc.git] DEBUG * branch refs/pull/429/head -> FETCH_HEAD 2026-10-09 23:40:01,199 [ scc.git] DEBUG Calling 'git fetch origin pull/432/head' 2026-10-09 23:40:01,667 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-10-09 23:40:01,668 [ scc.git] DEBUG * branch refs/pull/432/head -> FETCH_HEAD 2026-10-09 23:40:01,697 [ scc.git] DEBUG Calling 'git fetch origin pull/433/head' 2026-10-09 23:40:02,270 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-10-09 23:40:02,270 [ scc.git] DEBUG * branch refs/pull/433/head -> FETCH_HEAD 2026-10-09 23:40:02,298 [ scc.git] DEBUG ## Unique users: [] 2026-10-09 23:40:02,298 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:40:02,298 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:40:02,309 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2026-10-09 23:40:02,337 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:40:02,347 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 429 (Bump scripts from `312afbe` to `4b4c755`) 3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2026-10-09 23:40:02,399 [ scc.git] DEBUG Already up to date. 2026-10-09 23:40:02,591 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:40:02,591 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25bf90a85a7e0945e652f9d78050c8c4860acb51' 2026-10-09 23:40:02,625 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:40:02,639 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 432 (Bump omero-figure from `fb316a7` to `9cc36cd`) 25bf90a85a7e0945e652f9d78050c8c4860acb51' 2026-10-09 23:40:02,700 [ scc.git] DEBUG Already up to date. 2026-10-09 23:40:03,030 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:40:03,030 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6fd5dc72efc90d7f749b332dba3f903414852d74' 2026-10-09 23:40:03,062 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:40:03,072 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 433 (Bump omero-iviewer from `b4102d4` to `7a798ce`) 6fd5dc72efc90d7f749b332dba3f903414852d74' 2026-10-09 23:40:03,132 [ scc.git] DEBUG Already up to date. 2026-10-09 23:40:03,475 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:40:03,476 [ scc.git] DEBUG Calling 'git submodule update' 2026-10-09 23:40:04,273 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:40:04,273 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:40:04,282 [ scc.repo] DEBUG ## PRs found: 2026-10-09 23:40:04,659 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/pulls HTTP/1.1" 200 None 2026-10-09 23:40:05,174 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/21 HTTP/1.1" 200 None 2026-10-09 23:40:05,711 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/21/comments HTTP/1.1" 200 None 2026-10-09 23:40:05,712 [ scc.repo] DEBUG # ... Include label: include 2026-10-09 23:40:06,296 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/2ee7ef68e92851305e84f793e1301b6a97fc7200?page=1 HTTP/1.1" 200 None 2026-10-09 23:40:06,845 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/2ee7ef68e92851305e84f793e1301b6a97fc7200/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-09 23:40:07,330 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/2ee7ef68e92851305e84f793e1301b6a97fc7200?page=1 HTTP/1.1" 200 None 2026-10-09 23:40:07,790 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/statuses/2ee7ef68e92851305e84f793e1301b6a97fc7200?per_page=1 HTTP/1.1" 200 None 2026-10-09 23:40:08,268 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/2ee7ef68e92851305e84f793e1301b6a97fc7200?page=1 HTTP/1.1" 200 None 2026-10-09 23:40:08,808 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/2ee7ef68e92851305e84f793e1301b6a97fc7200/status HTTP/1.1" 200 None 2026-10-09 23:40:08,809 [ scc.repo] DEBUG - PR 21 tcompa 'Avoid request to `WEBGATEWAYINDEX + "open_with/` if `APP_SERVED_BY_OMERO = false`' 2026-10-09 23:40:09,323 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/12 HTTP/1.1" 200 None 2026-10-09 23:40:09,842 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/12/comments HTTP/1.1" 200 None 2026-10-09 23:40:10,462 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/7f38d9606d8fabb03308615a3108dabe4ddff54f?page=1 HTTP/1.1" 200 None 2026-10-09 23:40:10,953 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/7f38d9606d8fabb03308615a3108dabe4ddff54f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-09 23:40:11,438 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/7f38d9606d8fabb03308615a3108dabe4ddff54f?page=1 HTTP/1.1" 200 None 2026-10-09 23:40:11,923 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/statuses/7f38d9606d8fabb03308615a3108dabe4ddff54f?per_page=1 HTTP/1.1" 200 None 2026-10-09 23:40:12,399 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/7f38d9606d8fabb03308615a3108dabe4ddff54f?page=1 HTTP/1.1" 200 None 2026-10-09 23:40:12,911 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/7f38d9606d8fabb03308615a3108dabe4ddff54f/status HTTP/1.1" 200 None 2026-10-09 23:40:12,912 [ scc.repo] DEBUG - PR 12 will-moore 'Browser based export' 2026-10-09 23:40:13,443 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/9 HTTP/1.1" 200 None 2026-10-09 23:40:13,970 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/9/comments HTTP/1.1" 200 None 2026-10-09 23:40:14,471 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/5 HTTP/1.1" 200 None 2026-10-09 23:40:14,997 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/5/comments HTTP/1.1" 200 None 2026-10-09 23:40:15,578 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/fbc156c89d5749c985216f2fddcbfb9eb34a4d5a?page=1 HTTP/1.1" 200 None 2026-10-09 23:40:16,104 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/fbc156c89d5749c985216f2fddcbfb9eb34a4d5a/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-09 23:40:16,597 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/fbc156c89d5749c985216f2fddcbfb9eb34a4d5a?page=1 HTTP/1.1" 200 None 2026-10-09 23:40:17,076 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/statuses/fbc156c89d5749c985216f2fddcbfb9eb34a4d5a?per_page=1 HTTP/1.1" 200 None 2026-10-09 23:40:17,585 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/fbc156c89d5749c985216f2fddcbfb9eb34a4d5a?page=1 HTTP/1.1" 200 None 2026-10-09 23:40:18,136 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/fbc156c89d5749c985216f2fddcbfb9eb34a4d5a/status HTTP/1.1" 200 None 2026-10-09 23:40:18,137 [ scc.repo] DEBUG - PR 5 will-moore 'Add sample_figures/ngff_images_figure.json' 2026-10-09 23:40:18,137 [ scc.repo] DEBUG ## Branches found: 2026-10-09 23:40:18,137 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/figure 2026-10-09 23:40:18,138 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:40:18,138 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:40:18,157 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-10-09 23:40:18,177 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-10-09 23:40:18,177 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-10-09 23:40:18,250 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-10-09 23:40:18,846 [ scc.git] DEBUG Updating 3935875..e92b4e8 2026-10-09 23:40:19,506 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/pulls/20 HTTP/1.1" 200 None 2026-10-09 23:40:20,361 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/pulls/19 HTTP/1.1" 200 None 2026-10-09 23:40:21,168 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/pulls/14 HTTP/1.1" 200 None 2026-10-09 23:40:22,047 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/pulls/17 HTTP/1.1" 200 None 2026-10-09 23:40:22,840 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/pulls/15 HTTP/1.1" 200 None 2026-10-09 23:40:22,841 [ scc.git] DEBUG Calling 'git fetch origin pull/5/head' 2026-10-09 23:40:23,636 [ scc.git] DEBUG From https://github.com/ome/figure 2026-10-09 23:40:23,636 [ scc.git] DEBUG * branch refs/pull/5/head -> FETCH_HEAD 2026-10-09 23:40:23,658 [ scc.git] DEBUG Calling 'git fetch origin pull/12/head' 2026-10-09 23:40:24,117 [ scc.git] DEBUG From https://github.com/ome/figure 2026-10-09 23:40:24,117 [ scc.git] DEBUG * branch refs/pull/12/head -> FETCH_HEAD 2026-10-09 23:40:24,140 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head' 2026-10-09 23:40:24,598 [ scc.git] DEBUG From https://github.com/ome/figure 2026-10-09 23:40:24,598 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD 2026-10-09 23:40:24,626 [ scc.git] DEBUG ## Unique users: [] 2026-10-09 23:40:24,626 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:40:24,626 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:40:24,641 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...fbc156c89d5749c985216f2fddcbfb9eb34a4d5a' 2026-10-09 23:40:24,722 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:40:24,736 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 5 (Add sample_figures/ngff_images_figure.json) fbc156c89d5749c985216f2fddcbfb9eb34a4d5a' 2026-10-09 23:40:25,127 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-09 23:40:25,195 [ scc.git] DEBUG sample_figures/IDR_JAX_images.json | 4304 ++++++++++++++++++++++++++++++++ 2026-10-09 23:40:25,196 [ scc.git] DEBUG sample_figures/ngff_images_figure.json | 2086 ++++++++++++++++ 2026-10-09 23:40:25,196 [ scc.git] DEBUG src/js/models/zarr_utils.js | 11 +- 2026-10-09 23:40:25,196 [ scc.git] DEBUG src/js/views/open_local_file_modal.js | 4 +- 2026-10-09 23:40:25,196 [ scc.git] DEBUG 4 files changed, 6400 insertions(+), 5 deletions(-) 2026-10-09 23:40:25,196 [ scc.git] DEBUG create mode 100644 sample_figures/IDR_JAX_images.json 2026-10-09 23:40:25,196 [ scc.git] DEBUG create mode 100644 sample_figures/ngff_images_figure.json 2026-10-09 23:40:25,386 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:40:25,386 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...7f38d9606d8fabb03308615a3108dabe4ddff54f' 2026-10-09 23:40:25,454 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:40:25,465 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 12 (Browser based export) 7f38d9606d8fabb03308615a3108dabe4ddff54f' 2026-10-09 23:40:25,808 [ scc.git] DEBUG Auto-merging src/js/models/zarr_utils.js 2026-10-09 23:40:25,869 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-09 23:40:25,960 [ scc.git] DEBUG ome_figure/export_script.py | 1861 ++++++++++++++++++++++++++++++++++++++++ 2026-10-09 23:40:25,960 [ scc.git] DEBUG package-lock.json | 263 +++++- 2026-10-09 23:40:25,960 [ scc.git] DEBUG package.json | 3 +- 2026-10-09 23:40:25,960 [ scc.git] DEBUG src/css/figure.css | 9 + 2026-10-09 23:40:25,960 [ scc.git] DEBUG src/index.html | 11 + 2026-10-09 23:40:25,960 [ scc.git] DEBUG src/js/export/figure_to_pdf.js | 1164 +++++++++++++++++++++++++ 2026-10-09 23:40:25,960 [ scc.git] DEBUG src/js/models/figure_model.js | 44 +- 2026-10-09 23:40:25,960 [ scc.git] DEBUG src/js/models/panel_model.js | 137 ++- 2026-10-09 23:40:25,960 [ scc.git] DEBUG src/js/models/zarr_utils.js | 10 +- 2026-10-09 23:40:25,960 [ scc.git] DEBUG src/js/views/figure_view.js | 178 ++-- 2026-10-09 23:40:25,960 [ scc.git] DEBUG src/js/views/panel_view.js | 20 +- 2026-10-09 23:40:25,960 [ scc.git] DEBUG 11 files changed, 3582 insertions(+), 118 deletions(-) 2026-10-09 23:40:25,960 [ scc.git] DEBUG create mode 100644 ome_figure/export_script.py 2026-10-09 23:40:25,960 [ scc.git] DEBUG create mode 100644 src/js/export/figure_to_pdf.js 2026-10-09 23:40:26,171 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:40:26,172 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee7ef68e92851305e84f793e1301b6a97fc7200' 2026-10-09 23:40:26,237 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:40:26,248 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Avoid request to `WEBGATEWAYINDEX + "open_with/` if `APP_SERVED_BY_OMERO = false`) 2ee7ef68e92851305e84f793e1301b6a97fc7200' 2026-10-09 23:40:26,523 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-09 23:40:26,596 [ scc.git] DEBUG src/js/views/util.js | 24 +++++++++++++----------- 2026-10-09 23:40:26,596 [ scc.git] DEBUG 1 file changed, 13 insertions(+), 11 deletions(-) 2026-10-09 23:40:26,773 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:40:26,773 [ scc.git] DEBUG Calling 'git submodule update' 2026-10-09 23:40:26,886 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:40:26,886 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:40:26,899 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-09 23:40:27,011 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-10-09 23:40:27,105 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f4f07d47810> has no local changes 2026-10-09 23:40:27,105 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/figure Excluded PRs: - PR 9 will-moore 'Save omezarr collection' (stage: draft) Updating 3935875..e92b4e8 Previously merged: - PR 20 will-moore 'Hide export dropdown unless omero' - PR 19 Rdornier 'Fix rectangle crop' - PR 14 will-moore 'App served by omero env' - PR 17 Rdornier 'Do not crop rotated panel at export' - PR 15 will-moore 'Replace navbar 'OMERO' with 'figure' and OME logo' Merged PRs: - PR 5 will-moore 'Add sample_figures/ngff_images_figure.json' - PR 12 will-moore 'Browser based export' - PR 21 tcompa 'Avoid request to `WEBGATEWAYINDEX + "open_with/` if `APP_SERVED_BY_OMERO = false`' Generated by OMERO-plugins-push#106 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/106/)' 2026-10-09 23:40:27,288 [ scc.git] DEBUG [detached HEAD 0a3eee6] merge master -Dorg -Ssuccess-only 2026-10-09 23:40:27,291 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:40:27,291 [ scc.repo] DEBUG ## PRs found: 2026-10-09 23:40:27,523 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/minimal-omero-client/pulls HTTP/1.1" 200 2 2026-10-09 23:40:27,523 [ scc.repo] DEBUG ## Branches found: 2026-10-09 23:40:27,523 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client 2026-10-09 23:40:27,523 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:40:27,524 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:40:27,538 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-10-09 23:40:27,555 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-10-09 23:40:27,556 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-10-09 23:40:27,574 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-10-09 23:40:27,630 [ scc.git] DEBUG Already up to date. 2026-10-09 23:40:27,630 [ scc.git] DEBUG ## Unique users: [] 2026-10-09 23:40:27,630 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:40:27,630 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:40:27,646 [ scc.git] DEBUG Calling 'git submodule update' 2026-10-09 23:40:27,759 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:40:27,759 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:40:27,770 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-09 23:40:27,878 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-10-09 23:40:27,937 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f4f078f9050> has no local changes 2026-10-09 23:40:27,937 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/minimal-omero-client Already up to date. Generated by OMERO-plugins-push#106 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/106/)' 2026-10-09 23:40:28,044 [ scc.git] DEBUG [detached HEAD c5b43fb] merge master -Dorg -Ssuccess-only 2026-10-09 23:40:28,046 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:40:28,046 [ scc.repo] DEBUG ## PRs found: 2026-10-09 23:40:28,451 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/pulls HTTP/1.1" 200 None 2026-10-09 23:40:28,968 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/29 HTTP/1.1" 200 None 2026-10-09 23:40:28,969 [ scc.repo] DEBUG # ... Include label: dependencies 2026-10-09 23:40:29,611 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4?page=1 HTTP/1.1" 200 None 2026-10-09 23:40:30,202 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-09 23:40:30,788 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-10-09 23:40:31,312 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4?page=1 HTTP/1.1" 200 None 2026-10-09 23:40:31,774 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/statuses/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4?per_page=1 HTTP/1.1" 200 2 2026-10-09 23:40:31,774 [ scc.repo] DEBUG - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-10-09 23:40:32,452 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/18 HTTP/1.1" 200 None 2026-10-09 23:40:32,983 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/18/comments HTTP/1.1" 200 None 2026-10-09 23:40:32,984 [ scc.repo] DEBUG ## Branches found: 2026-10-09 23:40:32,984 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate 2026-10-09 23:40:32,984 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:40:32,984 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:40:33,000 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-10-09 23:40:33,015 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-10-09 23:40:33,015 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-10-09 23:40:33,036 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-10-09 23:40:33,087 [ scc.git] DEBUG Already up to date. 2026-10-09 23:40:33,087 [ scc.git] DEBUG Calling 'git fetch origin pull/29/head' 2026-10-09 23:40:33,508 [ scc.git] DEBUG From https://github.com/ome/omero-cli-duplicate 2026-10-09 23:40:33,508 [ scc.git] DEBUG * branch refs/pull/29/head -> FETCH_HEAD 2026-10-09 23:40:33,533 [ scc.git] DEBUG ## Unique users: [] 2026-10-09 23:40:33,533 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:40:33,533 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:40:33,548 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4' 2026-10-09 23:40:33,570 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:40:33,584 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 29 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4' 2026-10-09 23:40:33,772 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-09 23:40:33,844 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-10-09 23:40:33,844 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-10-09 23:40:34,064 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:40:34,064 [ scc.git] DEBUG Calling 'git submodule update' 2026-10-09 23:40:34,195 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:40:34,195 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:40:34,210 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-09 23:40:34,342 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-10-09 23:40:34,406 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f4f07988810> has no local changes 2026-10-09 23:40:34,406 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-cli-duplicate Excluded PRs: - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment) Already up to date. Merged PRs: - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#106 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/106/)' 2026-10-09 23:40:34,554 [ scc.git] DEBUG [detached HEAD 01a1a10] merge master -Dorg -Ssuccess-only 2026-10-09 23:40:34,556 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:40:34,556 [ scc.repo] DEBUG ## PRs found: 2026-10-09 23:40:34,909 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls HTTP/1.1" 200 None 2026-10-09 23:40:35,405 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/59 HTTP/1.1" 200 None 2026-10-09 23:40:35,899 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/59/comments HTTP/1.1" 200 None 2026-10-09 23:40:36,800 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99?page=1 HTTP/1.1" 200 None 2026-10-09 23:40:37,507 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-09 23:40:38,017 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-10-09 23:40:38,563 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99?page=1 HTTP/1.1" 200 None 2026-10-09 23:40:39,024 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/statuses/38c5fff61b004cd2efee36b3f5c034d2b8f01c99?per_page=1 HTTP/1.1" 200 2 2026-10-09 23:40:39,024 [ scc.repo] DEBUG - PR 59 will-moore 'Apply settings to Plate' 2026-10-09 23:40:39,542 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/52 HTTP/1.1" 200 None 2026-10-09 23:40:40,042 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/52/comments HTTP/1.1" 200 None 2026-10-09 23:40:40,043 [ scc.repo] DEBUG ## Branches found: 2026-10-09 23:40:40,043 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render 2026-10-09 23:40:40,043 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:40:40,044 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:40:40,061 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-10-09 23:40:40,079 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-10-09 23:40:40,079 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-10-09 23:40:40,104 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-10-09 23:40:40,277 [ scc.git] DEBUG Updating ce6e13c..68b7303 2026-10-09 23:40:40,888 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/74 HTTP/1.1" 200 None 2026-10-09 23:40:41,738 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/75 HTTP/1.1" 200 None 2026-10-09 23:40:42,572 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/71 HTTP/1.1" 200 None 2026-10-09 23:40:43,417 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/69 HTTP/1.1" 200 None 2026-10-09 23:40:43,418 [ scc.git] DEBUG Calling 'git fetch origin pull/59/head' 2026-10-09 23:40:44,226 [ scc.git] DEBUG From https://github.com/ome/omero-cli-render 2026-10-09 23:40:44,226 [ scc.git] DEBUG * branch refs/pull/59/head -> FETCH_HEAD 2026-10-09 23:40:44,256 [ scc.git] DEBUG ## Unique users: [] 2026-10-09 23:40:44,256 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:40:44,256 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:40:44,270 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38c5fff61b004cd2efee36b3f5c034d2b8f01c99' 2026-10-09 23:40:44,322 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:40:44,336 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 59 (Apply settings to Plate) 38c5fff61b004cd2efee36b3f5c034d2b8f01c99' 2026-10-09 23:40:44,507 [ scc.git] DEBUG Auto-merging src/omero_cli_render.py 2026-10-09 23:40:44,573 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-09 23:40:44,632 [ scc.git] DEBUG src/omero_cli_render.py | 170 ++++++++++++++++++++++++++++-------------------- 2026-10-09 23:40:44,632 [ scc.git] DEBUG 1 file changed, 101 insertions(+), 69 deletions(-) 2026-10-09 23:40:44,834 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:40:44,834 [ scc.git] DEBUG Calling 'git submodule update' 2026-10-09 23:40:44,969 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:40:44,969 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:40:44,985 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-09 23:40:45,102 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-10-09 23:40:45,174 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f4f078b3290> has no local changes 2026-10-09 23:40:45,174 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-cli-render Excluded PRs: - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft) Updating ce6e13c..68b7303 Previously merged: - PR 74 jburel 'Replace manual changelog by automated GH release step' - PR 75 jburel 'Sort the new channels to ensure settings are set' - PR 71 dominikl 'Escape slash character in image names' - PR 69 dominikl 'Fix help text for impo/export commands' Merged PRs: - PR 59 will-moore 'Apply settings to Plate' Generated by OMERO-plugins-push#106 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/106/)' 2026-10-09 23:40:45,329 [ scc.git] DEBUG [detached HEAD d7c661b] merge master -Dorg -Ssuccess-only 2026-10-09 23:40:45,331 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:40:45,331 [ scc.repo] DEBUG ## PRs found: 2026-10-09 23:40:45,662 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls HTTP/1.1" 200 None 2026-10-09 23:40:46,160 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/178 HTTP/1.1" 200 None 2026-10-09 23:40:46,656 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/178/comments HTTP/1.1" 200 None 2026-10-09 23:40:47,263 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae?page=1 HTTP/1.1" 200 None 2026-10-09 23:40:47,837 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-09 23:40:48,350 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-10-09 23:40:48,862 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae?page=1 HTTP/1.1" 200 None 2026-10-09 23:40:49,345 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/f99a6a6869bf6259376adaea157f24955c9aa3ae?per_page=1 HTTP/1.1" 200 None 2026-10-09 23:40:49,821 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae?page=1 HTTP/1.1" 200 None 2026-10-09 23:40:50,325 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae/status HTTP/1.1" 200 None 2026-10-09 23:40:50,326 [ scc.repo] DEBUG - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' 2026-10-09 23:40:50,835 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/174 HTTP/1.1" 200 None 2026-10-09 23:40:51,358 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/174/comments HTTP/1.1" 200 None 2026-10-09 23:40:51,931 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c?page=1 HTTP/1.1" 200 None 2026-10-09 23:40:52,463 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-09 23:40:53,107 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-10-09 23:40:53,601 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c?page=1 HTTP/1.1" 200 None 2026-10-09 23:40:54,067 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/e795ce506487fad5c1184c909aaa1dab9a30401c?per_page=1 HTTP/1.1" 200 None 2026-10-09 23:40:54,548 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c?page=1 HTTP/1.1" 200 None 2026-10-09 23:40:55,042 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c/status HTTP/1.1" 200 None 2026-10-09 23:40:55,043 [ scc.repo] DEBUG - PR 174 will-moore 'Skip wells' 2026-10-09 23:40:55,548 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/166 HTTP/1.1" 200 None 2026-10-09 23:40:56,050 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/162 HTTP/1.1" 200 None 2026-10-09 23:40:56,566 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/123 HTTP/1.1" 200 None 2026-10-09 23:40:57,105 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/123/comments HTTP/1.1" 200 None 2026-10-09 23:40:57,643 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/256245946/issues/123/comments?page=2 HTTP/1.1" 200 None 2026-10-09 23:40:57,644 [ scc.repo] DEBUG ## Branches found: 2026-10-09 23:40:57,644 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr 2026-10-09 23:40:57,645 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:40:57,645 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:40:57,663 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-10-09 23:40:57,682 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-10-09 23:40:57,682 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-10-09 23:40:58,035 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-10-09 23:40:58,537 [ scc.git] DEBUG Updating 11d3587..d5f88d8 2026-10-09 23:40:59,172 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/193 HTTP/1.1" 200 None 2026-10-09 23:40:59,978 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/182 HTTP/1.1" 200 None 2026-10-09 23:41:00,762 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/194 HTTP/1.1" 200 None 2026-10-09 23:41:01,570 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/197 HTTP/1.1" 200 None 2026-10-09 23:41:02,351 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/196 HTTP/1.1" 200 None 2026-10-09 23:41:03,260 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/172 HTTP/1.1" 200 None 2026-10-09 23:41:04,003 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/192 HTTP/1.1" 200 None 2026-10-09 23:41:04,807 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/186 HTTP/1.1" 200 None 2026-10-09 23:41:05,613 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/187 HTTP/1.1" 200 None 2026-10-09 23:41:06,511 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/180 HTTP/1.1" 200 None 2026-10-09 23:41:07,350 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/179 HTTP/1.1" 200 None 2026-10-09 23:41:08,243 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/177 HTTP/1.1" 200 None 2026-10-09 23:41:09,067 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/175 HTTP/1.1" 200 None 2026-10-09 23:41:10,038 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/147 HTTP/1.1" 200 None 2026-10-09 23:41:11,030 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/173 HTTP/1.1" 200 None 2026-10-09 23:41:11,896 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/171 HTTP/1.1" 200 None 2026-10-09 23:41:12,683 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/168 HTTP/1.1" 200 None 2026-10-09 23:41:12,684 [ scc.git] DEBUG Calling 'git fetch origin pull/174/head' 2026-10-09 23:41:13,714 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr 2026-10-09 23:41:13,714 [ scc.git] DEBUG * branch refs/pull/174/head -> FETCH_HEAD 2026-10-09 23:41:13,745 [ scc.git] DEBUG Calling 'git fetch origin pull/178/head' 2026-10-09 23:41:14,354 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr 2026-10-09 23:41:14,354 [ scc.git] DEBUG * branch refs/pull/178/head -> FETCH_HEAD 2026-10-09 23:41:14,379 [ scc.git] DEBUG ## Unique users: [] 2026-10-09 23:41:14,380 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:41:14,380 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:41:14,397 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...e795ce506487fad5c1184c909aaa1dab9a30401c' 2026-10-09 23:41:14,494 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:41:14,508 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 174 (Skip wells) e795ce506487fad5c1184c909aaa1dab9a30401c' 2026-10-09 23:41:14,989 [ scc.git] DEBUG Auto-merging README.rst 2026-10-09 23:41:14,989 [ scc.git] DEBUG Auto-merging src/omero_zarr/cli.py 2026-10-09 23:41:14,989 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/cli.py 2026-10-09 23:41:14,989 [ scc.git] DEBUG Auto-merging src/omero_zarr/masks.py 2026-10-09 23:41:14,989 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/masks.py 2026-10-09 23:41:14,989 [ scc.git] DEBUG Auto-merging src/omero_zarr/raw_pixels.py 2026-10-09 23:41:14,989 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/raw_pixels.py 2026-10-09 23:41:14,989 [ scc.git] DEBUG Auto-merging src/omero_zarr/util.py 2026-10-09 23:41:14,989 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/util.py 2026-10-09 23:41:14,989 [ scc.git] DEBUG Auto-merging test/integration/clitest/test_export.py 2026-10-09 23:41:14,989 [ scc.git] DEBUG CONFLICT (content): Merge conflict in test/integration/clitest/test_export.py 2026-10-09 23:41:15,014 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-10-09 23:41:15,015 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-10-09 23:41:15,059 [ scc.git] DEBUG Calling 'git reset --hard d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82' 2026-10-09 23:41:15,282 [ scc.git] DEBUG HEAD is now at d5f88d8 Bump version: 0.9.0 → 0.9.1.dev0 2026-10-09 23:41:15,488 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:41:15,489 [ scc.git] DEBUG Calling 'git merge-base d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82 e795ce506487fad5c1184c909aaa1dab9a30401c' 2026-10-09 23:41:15,572 [ scc.git] DEBUG Calling 'git diff --name-only 37ea7000309b4f8b87c5122c138fb59b17ecf86b..d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82' 2026-10-09 23:41:15,608 [ scc.git] INFO - PR 174 will-moore 'Skip wells' Conflicting PR. Removed from build [OMERO-plugins-push#106](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/106/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/106/consoleText) for more details. Possible conflicts: - Upstream changes - test/integration/clitest/test_export.py - src/omero_zarr/cli.py - src/omero_zarr/raw_pixels.py - src/omero_zarr/util.py - src/omero_zarr/masks.py --conflicts 2026-10-09 23:41:15,632 [ scc.config] DEBUG Found github.token 2026-10-09 23:41:15,632 [ scc.git] DEBUG Not adding comment to issue #174, already --conflicts. 2026-10-09 23:41:15,632 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...f99a6a6869bf6259376adaea157f24955c9aa3ae' 2026-10-09 23:41:15,725 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:41:15,743 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 178 (Fix export of masks with multi-theC as multi-channel labels) f99a6a6869bf6259376adaea157f24955c9aa3ae' 2026-10-09 23:41:16,115 [ scc.git] DEBUG Auto-merging src/omero_zarr/masks.py 2026-10-09 23:41:16,115 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/masks.py 2026-10-09 23:41:16,115 [ scc.git] DEBUG Auto-merging test/integration/clitest/test_export.py 2026-10-09 23:41:16,115 [ scc.git] DEBUG CONFLICT (content): Merge conflict in test/integration/clitest/test_export.py 2026-10-09 23:41:16,138 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-10-09 23:41:16,140 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-10-09 23:41:16,178 [ scc.git] DEBUG Calling 'git reset --hard d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82' 2026-10-09 23:41:16,353 [ scc.git] DEBUG HEAD is now at d5f88d8 Bump version: 0.9.0 → 0.9.1.dev0 2026-10-09 23:41:16,540 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:41:16,541 [ scc.git] DEBUG Calling 'git merge-base d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82 f99a6a6869bf6259376adaea157f24955c9aa3ae' 2026-10-09 23:41:16,619 [ scc.git] DEBUG Calling 'git diff --name-only 9530c10ba9823fcba6b39139987bf4bcd4a60179..d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82' 2026-10-09 23:41:16,659 [ scc.git] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' Conflicting PR. Removed from build [OMERO-plugins-push#106](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/106/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/106/consoleText) for more details. Possible conflicts: - PR #174 will-moore 'Skip wells' - src/omero_zarr/masks.py - test/integration/clitest/test_export.py - Upstream changes - src/omero_zarr/masks.py - test/integration/clitest/test_export.py --conflicts 2026-10-09 23:41:16,672 [ scc.config] DEBUG Found github.token 2026-10-09 23:41:16,673 [ scc.git] DEBUG Not adding comment to issue #178, already --conflicts. 2026-10-09 23:41:16,673 [ scc.git] DEBUG Calling 'git submodule update' 2026-10-09 23:41:16,808 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:41:16,808 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:41:16,825 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-09 23:41:16,952 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-10-09 23:41:17,025 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f4f079a7b50> has no local changes 2026-10-09 23:41:17,025 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-cli-zarr Excluded PRs: - PR 166 will-moore 'Downsample scale option' (stage: draft) - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment) Updating 11d3587..d5f88d8 Previously merged: - PR 193 dominikl 'Only parse import uris if stated' - PR 182 will-moore 'Revert "Remove support for Plate import"' - PR 194 will-moore 'Update uk1s3.embassy links to livingobjects' - PR 197 pwalczysko 'Fix pragma' - PR 196 will-moore 'Storage options only if needed' - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' - PR 192 jburel 'Set Omero pixel size' - PR 186 jburel 'Create release from tag' - PR 187 dominikl 'Fix target-by-name option' - PR 180 will-moore 'Import command' - PR 179 will-moore 'Changelog 0.6.0' - PR 177 jburel 'Replace fromstring by frombuffer' - PR 175 will-moore 'Pin ome-zarr-py <0.12.0' - PR 147 will-moore 'Name option' - PR 173 will-moore 'Add test_export_plate_polygons()' - PR 171 will-moore 'Initial addition of integration tests' - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Conflicting PRs (not included): - PR 174 will-moore 'Skip wells' - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' Generated by OMERO-plugins-push#106 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/106/)' 2026-10-09 23:41:17,169 [ scc.git] DEBUG [detached HEAD dc82483] merge master -Dorg -Ssuccess-only 2026-10-09 23:41:17,170 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:41:17,170 [ scc.repo] DEBUG ## PRs found: 2026-10-09 23:41:17,556 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls HTTP/1.1" 200 None 2026-10-09 23:41:18,101 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/710 HTTP/1.1" 200 None 2026-10-09 23:41:18,599 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/710/comments HTTP/1.1" 200 None 2026-10-09 23:41:18,600 [ scc.repo] DEBUG # ... Include label: dependencies 2026-10-09 23:41:19,358 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/9ffbb2959a93d788f12be0c4452f030315926ab2?page=1 HTTP/1.1" 200 None 2026-10-09 23:41:19,892 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/9ffbb2959a93d788f12be0c4452f030315926ab2/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-09 23:41:20,720 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/9ffbb2959a93d788f12be0c4452f030315926ab2/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-10-09 23:41:21,235 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/9ffbb2959a93d788f12be0c4452f030315926ab2?page=1 HTTP/1.1" 200 None 2026-10-09 23:41:21,688 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/9ffbb2959a93d788f12be0c4452f030315926ab2?per_page=1 HTTP/1.1" 200 2 2026-10-09 23:41:21,688 [ scc.repo] DEBUG - PR 710 dependabot[bot] 'Bump dompurify from 3.4.13 to 3.4.16' 2026-10-09 23:41:22,224 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/706 HTTP/1.1" 200 None 2026-10-09 23:41:22,728 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/706/comments HTTP/1.1" 200 None 2026-10-09 23:41:23,286 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/3c5df2d3e050fd57bf52c3b9b1b16cb91d1e4d64?page=1 HTTP/1.1" 200 None 2026-10-09 23:41:23,808 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/3c5df2d3e050fd57bf52c3b9b1b16cb91d1e4d64/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-09 23:41:24,287 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/3c5df2d3e050fd57bf52c3b9b1b16cb91d1e4d64/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-10-09 23:41:24,770 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/3c5df2d3e050fd57bf52c3b9b1b16cb91d1e4d64?page=1 HTTP/1.1" 200 None 2026-10-09 23:41:25,242 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/3c5df2d3e050fd57bf52c3b9b1b16cb91d1e4d64?per_page=1 HTTP/1.1" 200 2 2026-10-09 23:41:25,243 [ scc.repo] DEBUG - PR 706 will-moore 'Figure repo migration' 2026-10-09 23:41:25,243 [ scc.repo] DEBUG ## Branches found: 2026-10-09 23:41:25,243 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure 2026-10-09 23:41:25,244 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:41:25,244 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:41:25,266 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-10-09 23:41:25,307 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-10-09 23:41:25,308 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-10-09 23:41:26,558 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-10-09 23:41:28,053 [ scc.git] ERROR stderr (git merge --ff-only origin/master): Updating files: 100% (82/82) Updating files: 100% (82/82), done. 2026-10-09 23:41:28,053 [ scc.git] DEBUG Updating 9cc36cde..3195c3df 2026-10-09 23:41:28,579 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/704 HTTP/1.1" 200 None 2026-10-09 23:41:29,506 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/703 HTTP/1.1" 200 None 2026-10-09 23:41:30,331 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/700 HTTP/1.1" 200 None 2026-10-09 23:41:31,164 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/692 HTTP/1.1" 200 None 2026-10-09 23:41:31,974 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/701 HTTP/1.1" 200 None 2026-10-09 23:41:32,706 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/698 HTTP/1.1" 200 None 2026-10-09 23:41:33,458 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/697 HTTP/1.1" 200 None 2026-10-09 23:41:34,211 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/695 HTTP/1.1" 200 None 2026-10-09 23:41:35,079 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/693 HTTP/1.1" 200 None 2026-10-09 23:41:35,826 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/691 HTTP/1.1" 200 None 2026-10-09 23:41:36,613 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/686 HTTP/1.1" 200 None 2026-10-09 23:41:37,442 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/690 HTTP/1.1" 200 None 2026-10-09 23:41:38,306 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/681 HTTP/1.1" 200 None 2026-10-09 23:41:39,087 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/688 HTTP/1.1" 200 None 2026-10-09 23:41:39,937 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/685 HTTP/1.1" 200 None 2026-10-09 23:41:40,682 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/683 HTTP/1.1" 200 None 2026-10-09 23:41:41,480 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/680 HTTP/1.1" 200 None 2026-10-09 23:41:42,248 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/684 HTTP/1.1" 200 None 2026-10-09 23:41:43,106 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/682 HTTP/1.1" 200 None 2026-10-09 23:41:43,962 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/679 HTTP/1.1" 200 None 2026-10-09 23:41:44,763 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/677 HTTP/1.1" 200 None 2026-10-09 23:41:45,600 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/666 HTTP/1.1" 200 None 2026-10-09 23:41:46,414 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/676 HTTP/1.1" 200 None 2026-10-09 23:41:47,199 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/669 HTTP/1.1" 200 None 2026-10-09 23:41:48,135 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/662 HTTP/1.1" 200 None 2026-10-09 23:41:49,006 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/663 HTTP/1.1" 200 None 2026-10-09 23:41:49,871 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/674 HTTP/1.1" 200 None 2026-10-09 23:41:50,603 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/675 HTTP/1.1" 200 None 2026-10-09 23:41:51,448 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/671 HTTP/1.1" 200 None 2026-10-09 23:41:52,444 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/672 HTTP/1.1" 200 None 2026-10-09 23:41:53,422 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/667 HTTP/1.1" 200 None 2026-10-09 23:41:54,232 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/665 HTTP/1.1" 200 None 2026-10-09 23:41:55,059 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/656 HTTP/1.1" 200 None 2026-10-09 23:41:55,938 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/670 HTTP/1.1" 200 None 2026-10-09 23:41:56,850 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/664 HTTP/1.1" 200 None 2026-10-09 23:41:57,813 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/654 HTTP/1.1" 200 None 2026-10-09 23:41:58,698 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/648 HTTP/1.1" 200 None 2026-10-09 23:41:59,473 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/661 HTTP/1.1" 200 None 2026-10-09 23:42:00,309 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/649 HTTP/1.1" 200 None 2026-10-09 23:42:01,139 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/657 HTTP/1.1" 200 None 2026-10-09 23:42:02,038 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/637 HTTP/1.1" 200 None 2026-10-09 23:42:03,152 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/600 HTTP/1.1" 200 None 2026-10-09 23:42:04,087 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/653 HTTP/1.1" 200 None 2026-10-09 23:42:04,921 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/651 HTTP/1.1" 200 None 2026-10-09 23:42:05,729 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/650 HTTP/1.1" 200 None 2026-10-09 23:42:06,524 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/647 HTTP/1.1" 200 None 2026-10-09 23:42:07,320 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/610 HTTP/1.1" 200 None 2026-10-09 23:42:08,088 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/644 HTTP/1.1" 200 None 2026-10-09 23:42:08,921 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/646 HTTP/1.1" 200 None 2026-10-09 23:42:10,148 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/612 HTTP/1.1" 200 None 2026-10-09 23:42:10,981 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/630 HTTP/1.1" 200 None 2026-10-09 23:42:11,783 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/616 HTTP/1.1" 200 None 2026-10-09 23:42:12,697 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/605 HTTP/1.1" 200 None 2026-10-09 23:42:13,563 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/638 HTTP/1.1" 200 None 2026-10-09 23:42:14,312 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/633 HTTP/1.1" 200 None 2026-10-09 23:42:15,061 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/635 HTTP/1.1" 200 None 2026-10-09 23:42:15,867 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/623 HTTP/1.1" 200 None 2026-10-09 23:42:16,673 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/631 HTTP/1.1" 200 None 2026-10-09 23:42:16,777 [ scc.git] DEBUG Calling 'git fetch origin pull/706/head' 2026-10-09 23:42:17,371 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2026-10-09 23:42:17,371 [ scc.git] DEBUG * branch refs/pull/706/head -> FETCH_HEAD 2026-10-09 23:42:17,397 [ scc.git] DEBUG Calling 'git fetch origin pull/710/head' 2026-10-09 23:42:17,863 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2026-10-09 23:42:17,863 [ scc.git] DEBUG * branch refs/pull/710/head -> FETCH_HEAD 2026-10-09 23:42:17,892 [ scc.git] DEBUG ## Unique users: [] 2026-10-09 23:42:17,892 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:42:17,892 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:42:17,910 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3c5df2d3e050fd57bf52c3b9b1b16cb91d1e4d64' 2026-10-09 23:42:18,080 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:42:18,093 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 706 (Figure repo migration) 3c5df2d3e050fd57bf52c3b9b1b16cb91d1e4d64' 2026-10-09 23:42:18,839 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-09 23:42:18,950 [ scc.git] DEBUG .bumpversion.cfg | 4 +- 2026-10-09 23:42:18,950 [ scc.git] DEBUG .github/workflows/omero_plugin.yml | 2 + 2026-10-09 23:42:18,950 [ scc.git] DEBUG .github/workflows/pages.yml | 28 - 2026-10-09 23:42:18,950 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 + 2026-10-09 23:42:18,950 [ scc.git] DEBUG .gitignore | 7 +- 2026-10-09 23:42:18,950 [ scc.git] DEBUG .gitmodules | 3 + 2026-10-09 23:42:18,950 [ scc.git] DEBUG .omeroci/app-srv | 4 +- 2026-10-09 23:42:18,950 [ scc.git] DEBUG README.rst | 76 +- 2026-10-09 23:42:18,950 [ scc.git] DEBUG deploy_build.sh | 21 +- 2026-10-09 23:42:18,950 [ scc.git] DEBUG deploy_ghpages.sh | 1 + 2026-10-09 23:42:18,950 [ scc.git] DEBUG figure | 1 + 2026-10-09 23:42:18,950 [ scc.git] DEBUG omero_figure/scripts/__init__.py | 0 2026-10-09 23:42:18,950 [ scc.git] DEBUG omero_figure/scripts/omero/__init__.py | 0 2026-10-09 23:42:18,950 [ scc.git] DEBUG .../scripts/omero/figure_scripts/Figure_To_Pdf.py | 3562 -------------------- 2026-10-09 23:42:18,950 [ scc.git] DEBUG .../scripts/omero/figure_scripts/__init__.py | 0 2026-10-09 23:42:18,950 [ scc.git] DEBUG .../scripts/omero/figure_scripts/pilfonts/B24.pbm | Bin 8441 -> 0 bytes 2026-10-09 23:42:18,950 [ scc.git] DEBUG .../scripts/omero/figure_scripts/pilfonts/B24.pil | Bin 5143 -> 0 bytes 2026-10-09 23:42:18,950 [ scc.git] DEBUG .../omero/figure_scripts/pilfonts/FreeSans.ttf | Bin 568896 -> 0 bytes 2026-10-09 23:42:18,950 [ scc.git] DEBUG .../omero/figure_scripts/pilfonts/FreeSansBold.ttf | Bin 359272 -> 0 bytes 2026-10-09 23:42:18,950 [ scc.git] DEBUG .../pilfonts/FreeSansBoldOblique.ttf | Bin 301188 -> 0 bytes 2026-10-09 23:42:18,951 [ scc.git] DEBUG .../figure_scripts/pilfonts/FreeSansOblique.ttf | Bin 441432 -> 0 bytes 2026-10-09 23:42:18,951 [ scc.git] DEBUG omero_figure/views.py | 52 +- 2026-10-09 23:42:18,951 [ scc.git] DEBUG package-lock.json | 1499 -------- 2026-10-09 23:42:18,951 [ scc.git] DEBUG package.json | 51 - 2026-10-09 23:42:18,951 [ scc.git] DEBUG setup.py | 8 + 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/css/figure.css | 1551 --------- 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/html/dialogs/scriptManagerDialog.html | 86 - 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/images/arrow-icon-16.png | Bin 2878 -> 0 bytes 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/images/button-down-grey.png | Bin 3274 -> 0 bytes 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/images/button-down.png | Bin 1879 -> 0 bytes 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/images/button-flat.png | Bin 2827 -> 0 bytes 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/images/button-up.png | Bin 2111 -> 0 bytes 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/images/crop20.png | Bin 3022 -> 0 bytes 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/images/cursor-icon-16.png | Bin 245 -> 0 bytes 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/images/ellipse-icon-16.png | Bin 3020 -> 0 bytes 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/images/gradient.png | Bin 3405 -> 0 bytes 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/images/hue.png | Bin 2837 -> 0 bytes 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/images/line-icon-16.png | Bin 2865 -> 0 bytes 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/images/luts_10.png | Bin 18556 -> 0 bytes 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/images/markdown_dark32x20.png | Bin 3116 -> 0 bytes 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/images/markdown_light32x20.png | Bin 3089 -> 0 bytes 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/images/point-icon-24.png | Bin 2477 -> 0 bytes 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/images/polygon-icon-16.png | Bin 2880 -> 0 bytes 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/images/polyline-icon-16.png | Bin 2874 -> 0 bytes 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/images/projection20.png | Bin 3585 -> 0 bytes 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/images/square-outline-icon-16.png | Bin 96 -> 0 bytes 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/images/text-icon-24.png | Bin 2477 -> 0 bytes 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/index.html | 1986 ----------- 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/js/main.js | 189 -- 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/js/models/figure_model.js | 1398 -------- 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/js/models/panel_model.js | 1577 --------- 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/js/models/roi_model.js | 149 - 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/js/models/undo.js | 282 -- 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/js/models/zarr_utils.js | 483 --- 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/js/shapeEditorTest.js | 454 --- 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/js/shape_editor/ellipse.js | 604 ---- 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/js/shape_editor/line.js | 612 ---- 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/js/shape_editor/point.js | 527 --- 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/js/shape_editor/polygon.js | 462 --- 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/js/shape_editor/rect.js | 618 ---- 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/js/shape_editor/shape_manager.js | 992 ------ 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/js/shape_editor/text.js | 564 ---- 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/js/views/backbone.mousetrap.js | 69 - 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/js/views/channel_slider_view.js | 450 --- 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/js/views/chgrp_modal_view.js | 143 - 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/js/views/colorbar_form_view.js | 124 - 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/js/views/colorpicker.js | 143 - 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/js/views/crop_modal_view.js | 660 ---- 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/js/views/figure_view.js | 1125 ------- 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/js/views/files.js | 374 -- 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/js/views/info_panel_view.js | 293 -- 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/js/views/label_suggestions.js | 753 ----- 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/js/views/labels_from_maps_modal.js | 197 -- 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/js/views/legend_view.js | 174 - 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/js/views/lutpicker.js | 181 - 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/js/views/modal_views.js | 536 --- 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/js/views/open_local_file_modal.js | 77 - 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/js/views/panel_view.js | 501 --- 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/js/views/raphael-rect.js | 291 -- 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/js/views/right_panel_view.js | 1572 --------- 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/js/views/roi_loader_view.js | 250 -- 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/js/views/roi_modal_view.js | 645 ---- 2026-10-09 23:42:18,951 [ scc.git] DEBUG src/js/views/scalebar_form_view.js | 230 -- 2026-10-09 23:42:18,952 [ scc.git] DEBUG src/js/views/svg_model_view.js | 441 --- 2026-10-09 23:42:18,952 [ scc.git] DEBUG src/js/views/util.csrf.js | 83 - 2026-10-09 23:42:18,952 [ scc.git] DEBUG src/js/views/util.js | 397 --- 2026-10-09 23:42:18,952 [ scc.git] DEBUG src/js/views/zt_sliders_view.js | 332 -- 2026-10-09 23:42:18,952 [ scc.git] DEBUG src/scss/styles.scss | 2 - 2026-10-09 23:42:18,952 [ scc.git] DEBUG src/shapeEditorTest.html | 198 -- 2026-10-09 23:42:18,952 [ scc.git] DEBUG src/templates/channel_slider.template.html | 90 - 2026-10-09 23:42:18,952 [ scc.git] DEBUG src/templates/checkbox_template.html | 4 - 2026-10-09 23:42:18,952 [ scc.git] DEBUG src/templates/colorbar.template.html | 42 - 2026-10-09 23:42:18,952 [ scc.git] DEBUG src/templates/colorbar_form.template.html | 137 - 2026-10-09 23:42:18,952 [ scc.git] DEBUG src/templates/figure_panel.template.html | 6 - 2026-10-09 23:42:18,952 [ scc.git] DEBUG src/templates/files/figure_file_item.template.html | 32 - 2026-10-09 23:42:18,952 [ scc.git] DEBUG src/templates/image_display_options.template.html | 34 - 2026-10-09 23:42:18,952 [ scc.git] DEBUG src/templates/info_panel.template.html | 54 - 2026-10-09 23:42:18,952 [ scc.git] DEBUG src/templates/labels/label.template.html | 8 - 2026-10-09 23:42:18,952 [ scc.git] DEBUG .../labels/label_right_vertical.template.html | 8 - 2026-10-09 23:42:18,952 [ scc.git] DEBUG src/templates/labels/label_table.template.html | 11 - 2026-10-09 23:42:18,952 [ scc.git] DEBUG src/templates/labels/label_vertical.template.html | 8 - 2026-10-09 23:42:18,952 [ scc.git] DEBUG src/templates/labels_form.template.html | 13 - 2026-10-09 23:42:18,952 [ scc.git] DEBUG src/templates/labels_form_inner.template.html | 128 - 2026-10-09 23:42:18,952 [ scc.git] DEBUG src/templates/lut_picker.template.html | 21 - 2026-10-09 23:42:18,952 [ scc.git] DEBUG .../modal_dialogs/crop_modal_roi.template.html | 30 - 2026-10-09 23:42:18,952 [ scc.git] DEBUG 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2026-10-09 23:42:18,952 [ scc.git] DEBUG src/templates/viewport.template.html | 5 - 2026-10-09 23:42:18,952 [ scc.git] DEBUG src/templates/viewport_inner.template.html | 12 - 2026-10-09 23:42:18,952 [ scc.git] DEBUG src/templates/xywh_panel.template.html | 60 - 2026-10-09 23:42:18,952 [ scc.git] DEBUG src/templates/zoom_crop.template.html | 28 - 2026-10-09 23:42:18,952 [ scc.git] DEBUG src/test.html | 25 - 2026-10-09 23:42:18,952 [ scc.git] DEBUG vite.config.js | 32 - 2026-10-09 23:42:18,952 [ scc.git] DEBUG 122 files changed, 115 insertions(+), 29753 deletions(-) 2026-10-09 23:42:18,952 [ scc.git] DEBUG delete mode 100644 .github/workflows/pages.yml 2026-10-09 23:42:18,952 [ scc.git] DEBUG create mode 100644 .gitmodules 2026-10-09 23:42:18,952 [ scc.git] DEBUG create mode 160000 figure 2026-10-09 23:42:18,952 [ scc.git] DEBUG delete mode 100644 omero_figure/scripts/__init__.py 2026-10-09 23:42:18,952 [ scc.git] DEBUG delete mode 100644 omero_figure/scripts/omero/__init__.py 2026-10-09 23:42:18,952 [ scc.git] DEBUG delete mode 100644 omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 2026-10-09 23:42:18,952 [ scc.git] DEBUG delete mode 100644 omero_figure/scripts/omero/figure_scripts/__init__.py 2026-10-09 23:42:18,952 [ scc.git] DEBUG delete mode 100644 omero_figure/scripts/omero/figure_scripts/pilfonts/B24.pbm 2026-10-09 23:42:18,952 [ scc.git] DEBUG delete mode 100644 omero_figure/scripts/omero/figure_scripts/pilfonts/B24.pil 2026-10-09 23:42:18,952 [ scc.git] DEBUG delete mode 100644 omero_figure/scripts/omero/figure_scripts/pilfonts/FreeSans.ttf 2026-10-09 23:42:18,952 [ scc.git] DEBUG delete mode 100755 omero_figure/scripts/omero/figure_scripts/pilfonts/FreeSansBold.ttf 2026-10-09 23:42:18,952 [ scc.git] DEBUG delete mode 100755 omero_figure/scripts/omero/figure_scripts/pilfonts/FreeSansBoldOblique.ttf 2026-10-09 23:42:18,952 [ scc.git] DEBUG delete mode 100755 omero_figure/scripts/omero/figure_scripts/pilfonts/FreeSansOblique.ttf 2026-10-09 23:42:18,952 [ scc.git] DEBUG delete mode 100644 package-lock.json 2026-10-09 23:42:18,952 [ scc.git] DEBUG delete mode 100644 package.json 2026-10-09 23:42:18,952 [ scc.git] DEBUG delete mode 100644 src/css/figure.css 2026-10-09 23:42:18,952 [ scc.git] DEBUG delete mode 100644 src/html/dialogs/scriptManagerDialog.html 2026-10-09 23:42:18,952 [ scc.git] DEBUG delete mode 100644 src/images/arrow-icon-16.png 2026-10-09 23:42:18,952 [ scc.git] DEBUG delete mode 100644 src/images/button-down-grey.png 2026-10-09 23:42:18,952 [ scc.git] DEBUG delete mode 100644 src/images/button-down.png 2026-10-09 23:42:18,952 [ scc.git] DEBUG delete mode 100644 src/images/button-flat.png 2026-10-09 23:42:18,952 [ scc.git] DEBUG delete mode 100644 src/images/button-up.png 2026-10-09 23:42:18,952 [ scc.git] DEBUG delete mode 100644 src/images/crop20.png 2026-10-09 23:42:18,952 [ scc.git] DEBUG delete mode 100644 src/images/cursor-icon-16.png 2026-10-09 23:42:18,952 [ scc.git] DEBUG delete mode 100644 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[ scc.git] DEBUG delete mode 100644 src/js/shape_editor/point.js 2026-10-09 23:42:18,953 [ scc.git] DEBUG delete mode 100644 src/js/shape_editor/polygon.js 2026-10-09 23:42:18,953 [ scc.git] DEBUG delete mode 100644 src/js/shape_editor/rect.js 2026-10-09 23:42:18,953 [ scc.git] DEBUG delete mode 100644 src/js/shape_editor/shape_manager.js 2026-10-09 23:42:18,953 [ scc.git] DEBUG delete mode 100644 src/js/shape_editor/text.js 2026-10-09 23:42:18,953 [ scc.git] DEBUG delete mode 100644 src/js/views/backbone.mousetrap.js 2026-10-09 23:42:18,953 [ scc.git] DEBUG delete mode 100644 src/js/views/channel_slider_view.js 2026-10-09 23:42:18,953 [ scc.git] DEBUG delete mode 100644 src/js/views/chgrp_modal_view.js 2026-10-09 23:42:18,953 [ scc.git] DEBUG delete mode 100644 src/js/views/colorbar_form_view.js 2026-10-09 23:42:18,953 [ scc.git] DEBUG delete mode 100644 src/js/views/colorpicker.js 2026-10-09 23:42:18,953 [ scc.git] DEBUG delete mode 100644 src/js/views/crop_modal_view.js 2026-10-09 23:42:18,953 [ scc.git] DEBUG delete mode 100644 src/js/views/figure_view.js 2026-10-09 23:42:18,953 [ scc.git] DEBUG delete mode 100644 src/js/views/files.js 2026-10-09 23:42:18,953 [ scc.git] DEBUG delete mode 100644 src/js/views/info_panel_view.js 2026-10-09 23:42:18,953 [ scc.git] DEBUG delete mode 100644 src/js/views/label_suggestions.js 2026-10-09 23:42:18,953 [ scc.git] DEBUG delete mode 100644 src/js/views/labels_from_maps_modal.js 2026-10-09 23:42:18,953 [ scc.git] DEBUG delete mode 100644 src/js/views/legend_view.js 2026-10-09 23:42:18,953 [ scc.git] DEBUG delete mode 100644 src/js/views/lutpicker.js 2026-10-09 23:42:18,953 [ scc.git] DEBUG delete mode 100644 src/js/views/modal_views.js 2026-10-09 23:42:18,953 [ scc.git] DEBUG delete mode 100644 src/js/views/open_local_file_modal.js 2026-10-09 23:42:18,953 [ scc.git] DEBUG delete mode 100644 src/js/views/panel_view.js 2026-10-09 23:42:18,953 [ scc.git] DEBUG delete mode 100644 src/js/views/raphael-rect.js 2026-10-09 23:42:18,953 [ scc.git] DEBUG delete mode 100644 src/js/views/right_panel_view.js 2026-10-09 23:42:18,953 [ scc.git] DEBUG delete mode 100644 src/js/views/roi_loader_view.js 2026-10-09 23:42:18,953 [ scc.git] DEBUG delete mode 100644 src/js/views/roi_modal_view.js 2026-10-09 23:42:18,953 [ scc.git] DEBUG delete mode 100644 src/js/views/scalebar_form_view.js 2026-10-09 23:42:18,953 [ scc.git] DEBUG delete mode 100644 src/js/views/svg_model_view.js 2026-10-09 23:42:18,953 [ scc.git] DEBUG delete mode 100644 src/js/views/util.csrf.js 2026-10-09 23:42:18,953 [ scc.git] DEBUG delete mode 100644 src/js/views/util.js 2026-10-09 23:42:18,953 [ scc.git] DEBUG delete mode 100644 src/js/views/zt_sliders_view.js 2026-10-09 23:42:18,953 [ scc.git] DEBUG delete mode 100644 src/scss/styles.scss 2026-10-09 23:42:18,953 [ scc.git] DEBUG delete mode 100644 src/shapeEditorTest.html 2026-10-09 23:42:18,953 [ scc.git] DEBUG delete mode 100644 src/templates/channel_slider.template.html 2026-10-09 23:42:18,953 [ scc.git] DEBUG delete mode 100644 src/templates/checkbox_template.html 2026-10-09 23:42:18,953 [ scc.git] DEBUG delete mode 100644 src/templates/colorbar.template.html 2026-10-09 23:42:18,987 [ scc.git] DEBUG delete mode 100644 src/templates/colorbar_form.template.html 2026-10-09 23:42:18,987 [ scc.git] DEBUG delete mode 100644 src/templates/figure_panel.template.html 2026-10-09 23:42:18,987 [ scc.git] DEBUG delete mode 100644 src/templates/files/figure_file_item.template.html 2026-10-09 23:42:18,987 [ scc.git] DEBUG delete mode 100644 src/templates/image_display_options.template.html 2026-10-09 23:42:18,987 [ scc.git] DEBUG delete mode 100644 src/templates/info_panel.template.html 2026-10-09 23:42:18,987 [ scc.git] DEBUG delete mode 100644 src/templates/labels/label.template.html 2026-10-09 23:42:18,987 [ scc.git] DEBUG delete mode 100644 src/templates/labels/label_right_vertical.template.html 2026-10-09 23:42:18,987 [ scc.git] DEBUG delete mode 100644 src/templates/labels/label_table.template.html 2026-10-09 23:42:18,987 [ scc.git] DEBUG delete mode 100644 src/templates/labels/label_vertical.template.html 2026-10-09 23:42:18,987 [ scc.git] DEBUG delete mode 100644 src/templates/labels_form.template.html 2026-10-09 23:42:18,987 [ scc.git] DEBUG delete mode 100644 src/templates/labels_form_inner.template.html 2026-10-09 23:42:18,987 [ scc.git] DEBUG delete mode 100644 src/templates/lut_picker.template.html 2026-10-09 23:42:18,988 [ scc.git] DEBUG delete mode 100644 src/templates/modal_dialogs/crop_modal_roi.template.html 2026-10-09 23:42:18,988 [ scc.git] DEBUG delete mode 100644 src/templates/modal_dialogs/paper_setup_modal.template.html 2026-10-09 23:42:18,988 [ scc.git] DEBUG delete mode 100644 src/templates/modal_dialogs/preview_id_change.template.html 2026-10-09 23:42:18,988 [ scc.git] DEBUG delete mode 100644 src/templates/modal_dialogs/roi_modal_roi.template.html 2026-10-09 23:42:18,988 [ scc.git] DEBUG delete mode 100644 src/templates/modal_dialogs/roi_modal_shape.template.html 2026-10-09 23:42:18,988 [ scc.git] DEBUG delete mode 100644 src/templates/modal_dialogs/roi_zt_buttons.template.html 2026-10-09 23:42:18,988 [ scc.git] DEBUG delete mode 100644 src/templates/rois_form.template.html 2026-10-09 23:42:18,988 [ scc.git] DEBUG delete mode 100644 src/templates/scalebar_form.template.html 2026-10-09 23:42:18,988 [ scc.git] DEBUG delete mode 100644 src/templates/scalebar_panel.template.html 2026-10-09 23:42:18,988 [ scc.git] DEBUG delete mode 100644 src/templates/shapes/shape_item_template.html 2026-10-09 23:42:18,988 [ scc.git] DEBUG delete mode 100644 src/templates/shapes/shape_sidebar.template.html 2026-10-09 23:42:18,988 [ scc.git] DEBUG delete mode 100644 src/templates/shapes/shape_toolbar.template.html 2026-10-09 23:42:18,988 [ scc.git] DEBUG delete mode 100644 src/templates/viewport.template.html 2026-10-09 23:42:18,988 [ scc.git] DEBUG delete mode 100644 src/templates/viewport_inner.template.html 2026-10-09 23:42:18,988 [ scc.git] DEBUG delete mode 100644 src/templates/xywh_panel.template.html 2026-10-09 23:42:18,988 [ scc.git] DEBUG delete mode 100644 src/templates/zoom_crop.template.html 2026-10-09 23:42:18,988 [ scc.git] DEBUG delete mode 100644 src/test.html 2026-10-09 23:42:18,988 [ scc.git] DEBUG delete mode 100755 vite.config.js 2026-10-09 23:42:19,197 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:42:19,197 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...9ffbb2959a93d788f12be0c4452f030315926ab2' 2026-10-09 23:42:19,266 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:42:19,282 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 710 (Bump dompurify from 3.4.13 to 3.4.16) 9ffbb2959a93d788f12be0c4452f030315926ab2' 2026-10-09 23:42:19,491 [ scc.git] DEBUG CONFLICT (modify/delete): package-lock.json deleted in HEAD and modified in 9ffbb2959a93d788f12be0c4452f030315926ab2. Version 9ffbb2959a93d788f12be0c4452f030315926ab2 of package-lock.json left in tree. 2026-10-09 23:42:19,492 [ scc.git] DEBUG CONFLICT (modify/delete): package.json deleted in HEAD and modified in 9ffbb2959a93d788f12be0c4452f030315926ab2. Version 9ffbb2959a93d788f12be0c4452f030315926ab2 of package.json left in tree. 2026-10-09 23:42:19,518 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-10-09 23:42:19,523 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-10-09 23:42:19,560 [ scc.git] DEBUG Calling 'git reset --hard a98edd3fb7ab498920c378ea887c89e6d813f007' 2026-10-09 23:42:19,685 [ scc.git] DEBUG HEAD is now at a98edd3f merge master -Dorg -Ssuccess-only: PR 706 (Figure repo migration) 2026-10-09 23:42:19,875 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:42:19,876 [ scc.git] DEBUG Calling 'git merge-base 3195c3df4e7bf2507d9c942d5d8c9a8566498147 9ffbb2959a93d788f12be0c4452f030315926ab2' 2026-10-09 23:42:19,909 [ scc.git] DEBUG Calling 'git diff --name-only 3195c3df4e7bf2507d9c942d5d8c9a8566498147..3195c3df4e7bf2507d9c942d5d8c9a8566498147' 2026-10-09 23:42:19,937 [ scc.git] INFO - PR 710 dependabot[bot] 'Bump dompurify from 3.4.13 to 3.4.16' Conflicting PR. Removed from build [OMERO-plugins-push#106](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/106/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/106/consoleText) for more details. Possible conflicts: - PR #706 will-moore 'Figure repo migration' - package-lock.json - package.json --conflicts 2026-10-09 23:42:19,948 [ scc.config] DEBUG Found github.token 2026-10-09 23:42:19,948 [ scc.git] DEBUG Not adding comment to issue #710, already --conflicts. 2026-10-09 23:42:19,948 [ scc.git] DEBUG Calling 'git submodule update' 2026-10-09 23:42:20,055 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:42:20,055 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:42:20,067 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-09 23:42:20,175 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-10-09 23:42:20,255 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f4f08b779d0> has no local changes 2026-10-09 23:42:20,255 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-figure Updating 9cc36cde..3195c3df Previously merged: - PR 704 jburel 'Revert commit 49ae9c9' - PR 703 will-moore 'Readme remove rc' - PR 700 will-moore 'Fix parentheses in zoom level for loop for export script' - PR 692 will-moore 'colorbar lut background fix' - PR 701 will-moore 'bump nanoid to 3.3.18 with 'npm audit fix'' - PR 698 dependabot[bot] 'Bump dompurify from 3.4.9 to 3.4.13' - PR 697 dependabot[bot] 'Bump postcss from 8.5.15 to 8.5.25' - PR 695 dependabot[bot] 'Bump immutable from 5.1.6 to 5.1.9' - PR 693 dependabot[bot] 'Bump dompurify from 3.4.0 to 3.4.9' - PR 691 dependabot[bot] 'Bump esbuild and vite' - PR 686 will-moore 'Add note about zarr etc requirement for export script with zarr images' - PR 690 dependabot[bot] 'Bump postcss from 8.5.3 to 8.5.15' - PR 681 dependabot[bot] 'Bump dompurify from 3.3.2 to 3.4.0' - PR 688 will-moore 'app handles ?image=1 without needing /new?image=1' - PR 685 will-moore 'Fix static files links for release build' - PR 683 will-moore 'Add touch support for clicking on single panel' - PR 680 will-moore 'Use --pre install for export script in README' - PR 684 will-moore 'Fix PKG_VERSION fix in publish_pypi.yml' - PR 682 will-moore 'Enable pre-release rc workflow with bumpversion and publish to pypi' - PR 679 will-moore 'Remove commit from gist demoUrl to load latest, with livingobjects URLs' - PR 677 dependabot[bot] 'Bump vite from 6.4.1 to 6.4.2' - PR 666 will-moore 'Standalone app' - PR 676 dependabot[bot] 'Bump picomatch' - PR 669 will-moore 'Standalone python script' - PR 662 will-moore 'Export script handles OME-zarr images' - PR 663 will-moore 'Zarr' - PR 674 dependabot[bot] 'Bump immutable from 4.1.0 to 4.3.8' - PR 675 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.2' - PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8' - PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues' - PR 667 Tom-TBT 'Label suggestion interface' - PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID' - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO' - PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0' - PR 664 Nirkan 'Handle many channels ' - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes' - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540' - PR 661 Rdornier 'Align to grid - check if panels are already in the grid' - PR 649 jburel 'Replace manual changelog by automated GH release step' - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout' - PR 637 Rdornier 'Fix scalebar position' - PR 600 Rdornier 'Label on rois' - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles' - PR 651 Rdornier 'More compliant align to grid' - PR 650 jburel 'Bump Python version' - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…' - PR 610 will-moore 'Add docs/contributing.rst' - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1' - PR 646 JensWendt 'fix word wrap of image names' - PR 612 will-moore 'Script version' - PR 630 will-moore 'Fix color and position for ALL new panel insets' - PR 616 Rdornier 'Fix labels around border' - PR 605 Tom-TBT 'Colorbar feature' - PR 638 Rdornier 'Fix arrow opacity' - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4' - PR 635 dependabot[bot] 'Bump esbuild and vite' - PR 623 will-moore 'Fix wrapping of label X button. see issues/622' - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 706 will-moore 'Figure repo migration' Conflicting PRs (not included): - PR 710 dependabot[bot] 'Bump dompurify from 3.4.13 to 3.4.16' Generated by OMERO-plugins-push#106 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/106/)' 2026-10-09 23:42:20,430 [ scc.git] DEBUG [detached HEAD 1b61bc13] merge master -Dorg -Ssuccess-only 2026-10-09 23:42:20,435 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:42:20,435 [ scc.repo] DEBUG ## PRs found: 2026-10-09 23:42:20,791 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/pulls HTTP/1.1" 200 None 2026-10-09 23:42:21,328 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/31 HTTP/1.1" 200 None 2026-10-09 23:42:21,329 [ scc.repo] DEBUG # ... Include label: dependencies 2026-10-09 23:42:21,993 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c?page=1 HTTP/1.1" 200 None 2026-10-09 23:42:22,560 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-09 23:42:23,113 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-10-09 23:42:23,610 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c?page=1 HTTP/1.1" 200 None 2026-10-09 23:42:24,057 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/statuses/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c?per_page=1 HTTP/1.1" 200 2 2026-10-09 23:42:24,057 [ scc.repo] DEBUG - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-10-09 23:42:24,553 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/18 HTTP/1.1" 200 None 2026-10-09 23:42:25,058 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/18/comments HTTP/1.1" 200 None 2026-10-09 23:42:25,575 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337?page=1 HTTP/1.1" 200 None 2026-10-09 23:42:26,059 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-09 23:42:26,554 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337?page=1 HTTP/1.1" 200 None 2026-10-09 23:42:27,016 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/statuses/45aed4d15501fa5a524a8b500af8d426f0f6b337?per_page=1 HTTP/1.1" 200 2 2026-10-09 23:42:27,017 [ scc.repo] DEBUG - PR 18 jburel 'default size z value' 2026-10-09 23:42:27,017 [ scc.repo] DEBUG ## Branches found: 2026-10-09 23:42:27,017 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage 2026-10-09 23:42:27,018 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:42:27,018 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:42:27,040 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-10-09 23:42:27,061 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-10-09 23:42:27,061 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-10-09 23:42:27,084 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-10-09 23:42:27,148 [ scc.git] DEBUG Already up to date. 2026-10-09 23:42:27,148 [ scc.git] DEBUG Calling 'git fetch origin pull/18/head' 2026-10-09 23:42:27,675 [ scc.git] DEBUG From https://github.com/ome/omero-fpbioimage 2026-10-09 23:42:27,675 [ scc.git] DEBUG * branch refs/pull/18/head -> FETCH_HEAD 2026-10-09 23:42:27,701 [ scc.git] DEBUG Calling 'git fetch origin pull/31/head' 2026-10-09 23:42:28,109 [ scc.git] DEBUG From https://github.com/ome/omero-fpbioimage 2026-10-09 23:42:28,109 [ scc.git] DEBUG * branch refs/pull/31/head -> FETCH_HEAD 2026-10-09 23:42:28,134 [ scc.git] DEBUG ## Unique users: [] 2026-10-09 23:42:28,134 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:42:28,134 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:42:28,149 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45aed4d15501fa5a524a8b500af8d426f0f6b337' 2026-10-09 23:42:28,182 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:42:28,197 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 18 (default size z value) 45aed4d15501fa5a524a8b500af8d426f0f6b337' 2026-10-09 23:42:28,423 [ scc.git] DEBUG Auto-merging omero_fpbioimage/views.py 2026-10-09 23:42:28,510 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-09 23:42:28,599 [ scc.git] DEBUG omero_fpbioimage/views.py | 2 ++ 2026-10-09 23:42:28,599 [ scc.git] DEBUG 1 file changed, 2 insertions(+) 2026-10-09 23:42:28,787 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:42:28,788 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c' 2026-10-09 23:42:28,821 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:42:28,836 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 31 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c' 2026-10-09 23:42:29,029 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-09 23:42:29,100 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-10-09 23:42:29,101 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-10-09 23:42:29,297 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:42:29,297 [ scc.git] DEBUG Calling 'git submodule update' 2026-10-09 23:42:29,428 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:42:29,429 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:42:29,461 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-09 23:42:29,583 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-10-09 23:42:29,636 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f4f06764b10> has no local changes 2026-10-09 23:42:29,636 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-fpbioimage Already up to date. Merged PRs: - PR 18 jburel 'default size z value' - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#106 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/106/)' 2026-10-09 23:42:29,789 [ scc.git] DEBUG [detached HEAD 18e232e] merge master -Dorg -Ssuccess-only 2026-10-09 23:42:29,791 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:42:29,791 [ scc.repo] DEBUG ## PRs found: 2026-10-09 23:42:30,118 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/pulls HTTP/1.1" 200 None 2026-10-09 23:42:30,643 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/119 HTTP/1.1" 200 None 2026-10-09 23:42:31,158 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/119/comments HTTP/1.1" 200 None 2026-10-09 23:42:31,675 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/9042541/issues/119/comments?page=2 HTTP/1.1" 200 None 2026-10-09 23:42:31,676 [ scc.repo] DEBUG # ... Include label: dependencies 2026-10-09 23:42:32,349 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062?page=1 HTTP/1.1" 200 None 2026-10-09 23:42:32,854 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-09 23:42:33,342 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062?page=1 HTTP/1.1" 200 None 2026-10-09 23:42:33,812 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/00257fc993a12b3f78a45db039e7bf2c8a406062?per_page=1 HTTP/1.1" 200 2 2026-10-09 23:42:33,812 [ scc.repo] DEBUG - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' 2026-10-09 23:42:34,323 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/118 HTTP/1.1" 200 None 2026-10-09 23:42:34,909 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/118/comments HTTP/1.1" 200 None 2026-10-09 23:42:35,422 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/9042541/issues/118/comments?page=2 HTTP/1.1" 200 None 2026-10-09 23:42:35,423 [ scc.repo] DEBUG # ... Include label: dependencies 2026-10-09 23:42:36,093 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d?page=1 HTTP/1.1" 200 None 2026-10-09 23:42:36,663 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-09 23:42:37,145 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d?page=1 HTTP/1.1" 200 None 2026-10-09 23:42:37,598 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/2bf34ddacb511c52e473a104fe2a1c00204bae1d?per_page=1 HTTP/1.1" 200 2 2026-10-09 23:42:37,599 [ scc.repo] DEBUG - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' 2026-10-09 23:42:38,105 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/117 HTTP/1.1" 200 None 2026-10-09 23:42:38,105 [ scc.repo] DEBUG # ... Include label: dependencies 2026-10-09 23:42:38,754 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c?page=1 HTTP/1.1" 200 None 2026-10-09 23:42:39,262 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-09 23:42:39,763 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c?page=1 HTTP/1.1" 200 None 2026-10-09 23:42:40,235 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/155d7ddab4f04c4a91bffc5736ba0741003c566c?per_page=1 HTTP/1.1" 200 2 2026-10-09 23:42:40,235 [ scc.repo] DEBUG - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' 2026-10-09 23:42:40,769 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/116 HTTP/1.1" 200 None 2026-10-09 23:42:40,770 [ scc.repo] DEBUG # ... Include label: dependencies 2026-10-09 23:42:41,356 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d?page=1 HTTP/1.1" 200 None 2026-10-09 23:42:41,883 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-09 23:42:42,399 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d?page=1 HTTP/1.1" 200 None 2026-10-09 23:42:42,848 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d?per_page=1 HTTP/1.1" 200 2 2026-10-09 23:42:42,849 [ scc.repo] DEBUG - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' 2026-10-09 23:42:43,359 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/115 HTTP/1.1" 200 None 2026-10-09 23:42:43,873 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/115/comments HTTP/1.1" 200 None 2026-10-09 23:42:43,874 [ scc.repo] DEBUG # ... Include label: dependencies 2026-10-09 23:42:44,512 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5?page=1 HTTP/1.1" 200 None 2026-10-09 23:42:45,065 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-09 23:42:45,563 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5?page=1 HTTP/1.1" 200 None 2026-10-09 23:42:46,012 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/25020d66a7df4ec3cad5967706bb7d13b1493bb5?per_page=1 HTTP/1.1" 200 2 2026-10-09 23:42:46,013 [ scc.repo] DEBUG - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' 2026-10-09 23:42:46,530 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/114 HTTP/1.1" 200 None 2026-10-09 23:42:46,531 [ scc.repo] DEBUG # ... Include label: dependencies 2026-10-09 23:42:47,111 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b?page=1 HTTP/1.1" 200 None 2026-10-09 23:42:47,597 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-09 23:42:48,082 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b?page=1 HTTP/1.1" 200 None 2026-10-09 23:42:48,531 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/cf75d259b2882000d6be73bc1c11c99c27aa439b?per_page=1 HTTP/1.1" 200 2 2026-10-09 23:42:48,531 [ scc.repo] DEBUG - PR 114 dependabot[bot] 'Bump tar and fsevents' 2026-10-09 23:42:49,074 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/113 HTTP/1.1" 200 None 2026-10-09 23:42:49,075 [ scc.repo] DEBUG # ... Include label: dependencies 2026-10-09 23:42:49,763 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e?page=1 HTTP/1.1" 200 None 2026-10-09 23:42:50,409 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-09 23:42:50,919 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e?page=1 HTTP/1.1" 200 None 2026-10-09 23:42:51,395 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/6a657d7a4e0bbfaa3464e851023f29c63db15d4e?per_page=1 HTTP/1.1" 200 2 2026-10-09 23:42:51,395 [ scc.repo] DEBUG - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' 2026-10-09 23:42:51,395 [ scc.repo] DEBUG ## Branches found: 2026-10-09 23:42:51,395 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery 2026-10-09 23:42:51,397 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:42:51,397 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:42:51,416 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-10-09 23:42:51,434 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-10-09 23:42:51,435 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-10-09 23:42:51,456 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-10-09 23:42:51,511 [ scc.git] DEBUG Already up to date. 2026-10-09 23:42:51,511 [ scc.git] DEBUG Calling 'git fetch origin pull/113/head' 2026-10-09 23:42:51,986 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-10-09 23:42:51,986 [ scc.git] DEBUG * branch refs/pull/113/head -> FETCH_HEAD 2026-10-09 23:42:52,010 [ scc.git] DEBUG Calling 'git fetch origin pull/114/head' 2026-10-09 23:42:52,440 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-10-09 23:42:52,440 [ scc.git] DEBUG * branch refs/pull/114/head -> FETCH_HEAD 2026-10-09 23:42:52,465 [ scc.git] DEBUG Calling 'git fetch origin pull/115/head' 2026-10-09 23:42:52,879 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-10-09 23:42:52,879 [ scc.git] DEBUG * branch refs/pull/115/head -> FETCH_HEAD 2026-10-09 23:42:52,905 [ scc.git] DEBUG Calling 'git fetch origin pull/116/head' 2026-10-09 23:42:53,315 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-10-09 23:42:53,315 [ scc.git] DEBUG * branch refs/pull/116/head -> FETCH_HEAD 2026-10-09 23:42:53,339 [ scc.git] DEBUG Calling 'git fetch origin pull/117/head' 2026-10-09 23:42:53,749 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-10-09 23:42:53,749 [ scc.git] DEBUG * branch refs/pull/117/head -> FETCH_HEAD 2026-10-09 23:42:53,774 [ scc.git] DEBUG Calling 'git fetch origin pull/118/head' 2026-10-09 23:42:54,177 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-10-09 23:42:54,177 [ scc.git] DEBUG * branch refs/pull/118/head -> FETCH_HEAD 2026-10-09 23:42:54,201 [ scc.git] DEBUG Calling 'git fetch origin pull/119/head' 2026-10-09 23:42:54,610 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-10-09 23:42:54,610 [ scc.git] DEBUG * branch refs/pull/119/head -> FETCH_HEAD 2026-10-09 23:42:54,635 [ scc.git] DEBUG ## Unique users: [] 2026-10-09 23:42:54,635 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:42:54,635 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:42:54,649 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6a657d7a4e0bbfaa3464e851023f29c63db15d4e' 2026-10-09 23:42:54,670 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:42:54,682 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 113 (Bump elliptic from 6.5.4 to 6.6.1) 6a657d7a4e0bbfaa3464e851023f29c63db15d4e' 2026-10-09 23:42:54,894 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-09 23:42:54,977 [ scc.git] DEBUG package-lock.json | 12 ++++++------ 2026-10-09 23:42:54,977 [ scc.git] DEBUG 1 file changed, 6 insertions(+), 6 deletions(-) 2026-10-09 23:42:55,170 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:42:55,171 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...cf75d259b2882000d6be73bc1c11c99c27aa439b' 2026-10-09 23:42:55,204 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:42:55,218 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 114 (Bump tar and fsevents) cf75d259b2882000d6be73bc1c11c99c27aa439b' 2026-10-09 23:42:55,375 [ scc.git] DEBUG Auto-merging package-lock.json 2026-10-09 23:42:55,446 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-09 23:42:55,503 [ scc.git] DEBUG package-lock.json | 625 +++--------------------------------------------------- 2026-10-09 23:42:55,503 [ scc.git] DEBUG 1 file changed, 29 insertions(+), 596 deletions(-) 2026-10-09 23:42:55,703 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:42:55,704 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25020d66a7df4ec3cad5967706bb7d13b1493bb5' 2026-10-09 23:42:55,737 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:42:55,753 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 115 (Bump micromatch, webpack-cli and webpack) 25020d66a7df4ec3cad5967706bb7d13b1493bb5' 2026-10-09 23:42:55,954 [ scc.git] DEBUG Auto-merging package-lock.json 2026-10-09 23:42:55,955 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2026-10-09 23:42:55,975 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-10-09 23:42:55,976 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-10-09 23:42:56,005 [ scc.git] DEBUG Calling 'git reset --hard 0b5162ae6af156f23461606eccf8e6decb426383' 2026-10-09 23:42:56,157 [ scc.git] DEBUG HEAD is now at 0b5162a merge master -Dorg -Ssuccess-only: PR 114 (Bump tar and fsevents) 2026-10-09 23:42:56,336 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:42:56,337 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 25020d66a7df4ec3cad5967706bb7d13b1493bb5' 2026-10-09 23:42:56,358 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd' 2026-10-09 23:42:56,376 [ scc.git] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' Conflicting PR. Removed from build [OMERO-plugins-push#106](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/106/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/106/consoleText) for more details. Possible conflicts: - PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - package-lock.json - PR #114 dependabot[bot] 'Bump tar and fsevents' - package-lock.json --conflicts 2026-10-09 23:42:56,389 [ scc.config] DEBUG Found github.token 2026-10-09 23:42:56,389 [ scc.git] DEBUG Not adding comment to issue #115, already --conflicts. 2026-10-09 23:42:56,389 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d' 2026-10-09 23:42:56,410 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:42:56,423 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 116 (Bump browserify-sign from 4.0.4 to 4.2.3) 42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d' 2026-10-09 23:42:56,604 [ scc.git] DEBUG Auto-merging package-lock.json 2026-10-09 23:42:56,681 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-09 23:42:56,757 [ scc.git] DEBUG package-lock.json | 119 +++++++++++++++++++++++++++++++++++++++++++++++++----- 2026-10-09 23:42:56,757 [ scc.git] DEBUG 1 file changed, 108 insertions(+), 11 deletions(-) 2026-10-09 23:42:56,941 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:42:56,942 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...155d7ddab4f04c4a91bffc5736ba0741003c566c' 2026-10-09 23:42:56,988 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:42:57,008 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6) 155d7ddab4f04c4a91bffc5736ba0741003c566c' 2026-10-09 23:42:57,161 [ scc.git] DEBUG Auto-merging package-lock.json 2026-10-09 23:42:57,227 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-09 23:42:57,292 [ scc.git] DEBUG package-lock.json | 6 +++--- 2026-10-09 23:42:57,293 [ scc.git] DEBUG 1 file changed, 3 insertions(+), 3 deletions(-) 2026-10-09 23:42:57,474 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:42:57,475 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2bf34ddacb511c52e473a104fe2a1c00204bae1d' 2026-10-09 23:42:57,520 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:42:57,533 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 118 (Bump braces, webpack-cli and webpack) 2bf34ddacb511c52e473a104fe2a1c00204bae1d' 2026-10-09 23:42:57,694 [ scc.git] DEBUG Auto-merging package-lock.json 2026-10-09 23:42:57,694 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2026-10-09 23:42:57,723 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-10-09 23:42:57,724 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-10-09 23:42:57,756 [ scc.git] DEBUG Calling 'git reset --hard d64e95cddf7f0895226a903baaf5fbeff24cc5a5' 2026-10-09 23:42:57,921 [ scc.git] DEBUG HEAD is now at d64e95c merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6) 2026-10-09 23:42:58,105 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:42:58,106 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 2bf34ddacb511c52e473a104fe2a1c00204bae1d' 2026-10-09 23:42:58,128 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd' 2026-10-09 23:42:58,144 [ scc.git] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' Conflicting PR. Removed from build [OMERO-plugins-push#106](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/106/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/106/consoleText) for more details. Possible conflicts: - PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - package-lock.json - PR #114 dependabot[bot] 'Bump tar and fsevents' - package-lock.json - PR #115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - package-lock.json - PR #116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - package-lock.json - PR #117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' - package-lock.json --conflicts 2026-10-09 23:42:58,155 [ scc.config] DEBUG Found github.token 2026-10-09 23:42:58,155 [ scc.git] DEBUG Not adding comment to issue #118, already --conflicts. 2026-10-09 23:42:58,155 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...00257fc993a12b3f78a45db039e7bf2c8a406062' 2026-10-09 23:42:58,182 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:42:58,197 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 119 (Bump serialize-javascript and webpack) 00257fc993a12b3f78a45db039e7bf2c8a406062' 2026-10-09 23:42:58,373 [ scc.git] DEBUG Auto-merging package-lock.json 2026-10-09 23:42:58,374 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2026-10-09 23:42:58,401 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-10-09 23:42:58,403 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-10-09 23:42:58,443 [ scc.git] DEBUG Calling 'git reset --hard d64e95cddf7f0895226a903baaf5fbeff24cc5a5' 2026-10-09 23:42:58,585 [ scc.git] DEBUG HEAD is now at d64e95c merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6) 2026-10-09 23:42:58,758 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:42:58,759 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 00257fc993a12b3f78a45db039e7bf2c8a406062' 2026-10-09 23:42:58,780 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd' 2026-10-09 23:42:58,795 [ scc.git] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' Conflicting PR. Removed from build [OMERO-plugins-push#106](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/106/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/106/consoleText) for more details. Possible conflicts: - PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - package-lock.json - PR #114 dependabot[bot] 'Bump tar and fsevents' - package-lock.json - PR #115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - package-lock.json - PR #116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - package-lock.json - PR #117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' - package-lock.json - PR #118 dependabot[bot] 'Bump braces, webpack-cli and webpack' - package-lock.json --conflicts 2026-10-09 23:42:58,806 [ scc.config] DEBUG Found github.token 2026-10-09 23:42:58,806 [ scc.git] DEBUG Not adding comment to issue #119, already --conflicts. 2026-10-09 23:42:58,806 [ scc.git] DEBUG Calling 'git submodule update' 2026-10-09 23:42:58,916 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:42:58,917 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:42:58,929 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-09 23:42:59,039 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-10-09 23:42:59,104 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f4f06726cd0> has no local changes 2026-10-09 23:42:59,104 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-gallery Already up to date. Merged PRs: - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - PR 114 dependabot[bot] 'Bump tar and fsevents' - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' Conflicting PRs (not included): - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' Generated by OMERO-plugins-push#106 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/106/)' 2026-10-09 23:42:59,267 [ scc.git] DEBUG [detached HEAD b310cad] merge master -Dorg -Ssuccess-only 2026-10-09 23:42:59,269 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:42:59,269 [ scc.repo] DEBUG ## PRs found: 2026-10-09 23:42:59,634 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls HTTP/1.1" 200 None 2026-10-09 23:43:00,156 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/532 HTTP/1.1" 200 None 2026-10-09 23:43:00,655 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/532/comments HTTP/1.1" 200 None 2026-10-09 23:43:01,245 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/fb88f3a09446141b1d1bc276c87ea6a832ff1b3a?page=1 HTTP/1.1" 200 None 2026-10-09 23:43:01,854 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/fb88f3a09446141b1d1bc276c87ea6a832ff1b3a/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-09 23:43:02,364 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/fb88f3a09446141b1d1bc276c87ea6a832ff1b3a/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-10-09 23:43:02,839 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/fb88f3a09446141b1d1bc276c87ea6a832ff1b3a?page=1 HTTP/1.1" 200 None 2026-10-09 23:43:03,307 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/fb88f3a09446141b1d1bc276c87ea6a832ff1b3a?per_page=1 HTTP/1.1" 200 2 2026-10-09 23:43:03,307 [ scc.repo] DEBUG - PR 532 will-moore 'Zarr layers' 2026-10-09 23:43:04,069 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/497 HTTP/1.1" 200 None 2026-10-09 23:43:04,568 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/497/comments HTTP/1.1" 200 None 2026-10-09 23:43:05,205 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/d801e9c2623a1698a86b11f6c15e3e434417b726?page=1 HTTP/1.1" 200 None 2026-10-09 23:43:05,727 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/d801e9c2623a1698a86b11f6c15e3e434417b726/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-09 23:43:06,297 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/d801e9c2623a1698a86b11f6c15e3e434417b726/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-10-09 23:43:06,787 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/d801e9c2623a1698a86b11f6c15e3e434417b726?page=1 HTTP/1.1" 200 None 2026-10-09 23:43:07,245 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/d801e9c2623a1698a86b11f6c15e3e434417b726?per_page=1 HTTP/1.1" 200 2 2026-10-09 23:43:07,246 [ scc.repo] DEBUG - PR 497 will-moore 'ROI Tags' 2026-10-09 23:43:07,733 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/471 HTTP/1.1" 200 None 2026-10-09 23:43:08,241 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/471/comments HTTP/1.1" 200 None 2026-10-09 23:43:08,819 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9?page=1 HTTP/1.1" 200 None 2026-10-09 23:43:09,355 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-09 23:43:09,848 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9?page=1 HTTP/1.1" 200 None 2026-10-09 23:43:10,304 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/448d042a58da05a522531356cc58c1e35b5744d9?per_page=1 HTTP/1.1" 200 2 2026-10-09 23:43:10,305 [ scc.repo] DEBUG - PR 471 will-moore 'Z projection disabled tooltip' 2026-10-09 23:43:10,305 [ scc.repo] DEBUG ## Branches found: 2026-10-09 23:43:10,305 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer 2026-10-09 23:43:10,306 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:43:10,306 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:43:10,325 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-10-09 23:43:10,352 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-10-09 23:43:10,352 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-10-09 23:43:11,859 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-10-09 23:43:12,935 [ scc.git] DEBUG Updating 7a798cee..0a836211 2026-10-09 23:43:13,605 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/574 HTTP/1.1" 200 None 2026-10-09 23:43:14,587 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/573 HTTP/1.1" 200 None 2026-10-09 23:43:15,383 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/572 HTTP/1.1" 200 None 2026-10-09 23:43:16,211 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/571 HTTP/1.1" 200 None 2026-10-09 23:43:17,001 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/570 HTTP/1.1" 200 None 2026-10-09 23:43:17,792 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/568 HTTP/1.1" 200 None 2026-10-09 23:43:18,692 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/566 HTTP/1.1" 200 None 2026-10-09 23:43:19,501 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/565 HTTP/1.1" 200 None 2026-10-09 23:43:20,236 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/564 HTTP/1.1" 200 None 2026-10-09 23:43:21,058 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/567 HTTP/1.1" 200 None 2026-10-09 23:43:21,867 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/562 HTTP/1.1" 200 None 2026-10-09 23:43:22,658 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/563 HTTP/1.1" 200 None 2026-10-09 23:43:23,443 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/559 HTTP/1.1" 200 None 2026-10-09 23:43:24,294 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/558 HTTP/1.1" 200 None 2026-10-09 23:43:25,151 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/557 HTTP/1.1" 200 None 2026-10-09 23:43:26,107 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/541 HTTP/1.1" 200 None 2026-10-09 23:43:26,906 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/556 HTTP/1.1" 200 None 2026-10-09 23:43:27,760 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/554 HTTP/1.1" 200 None 2026-10-09 23:43:28,529 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/553 HTTP/1.1" 200 None 2026-10-09 23:43:29,288 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/552 HTTP/1.1" 200 None 2026-10-09 23:43:30,048 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/551 HTTP/1.1" 200 None 2026-10-09 23:43:30,936 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/550 HTTP/1.1" 200 None 2026-10-09 23:43:31,704 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/549 HTTP/1.1" 200 None 2026-10-09 23:43:32,440 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/548 HTTP/1.1" 200 None 2026-10-09 23:43:33,167 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/547 HTTP/1.1" 200 None 2026-10-09 23:43:33,933 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/540 HTTP/1.1" 200 None 2026-10-09 23:43:34,667 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/539 HTTP/1.1" 200 None 2026-10-09 23:43:35,473 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/537 HTTP/1.1" 200 None 2026-10-09 23:43:36,221 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/535 HTTP/1.1" 200 None 2026-10-09 23:43:37,114 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/527 HTTP/1.1" 200 None 2026-10-09 23:43:37,951 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/534 HTTP/1.1" 200 None 2026-10-09 23:43:38,873 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/533 HTTP/1.1" 200 None 2026-10-09 23:43:39,636 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/530 HTTP/1.1" 200 None 2026-10-09 23:43:40,504 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/528 HTTP/1.1" 200 None 2026-10-09 23:43:41,452 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/529 HTTP/1.1" 200 None 2026-10-09 23:43:42,398 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/526 HTTP/1.1" 200 None 2026-10-09 23:43:43,306 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/525 HTTP/1.1" 200 None 2026-10-09 23:43:44,081 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/524 HTTP/1.1" 200 None 2026-10-09 23:43:44,815 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/523 HTTP/1.1" 200 None 2026-10-09 23:43:45,559 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/522 HTTP/1.1" 200 None 2026-10-09 23:43:46,284 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/521 HTTP/1.1" 200 None 2026-10-09 23:43:47,038 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/520 HTTP/1.1" 200 None 2026-10-09 23:43:47,850 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/519 HTTP/1.1" 200 None 2026-10-09 23:43:48,618 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/518 HTTP/1.1" 200 None 2026-10-09 23:43:49,423 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/514 HTTP/1.1" 200 None 2026-10-09 23:43:50,256 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/513 HTTP/1.1" 200 None 2026-10-09 23:43:51,092 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/512 HTTP/1.1" 200 None 2026-10-09 23:43:51,966 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/465 HTTP/1.1" 200 None 2026-10-09 23:43:52,722 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/517 HTTP/1.1" 200 None 2026-10-09 23:43:53,615 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/516 HTTP/1.1" 200 None 2026-10-09 23:43:54,485 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/510 HTTP/1.1" 200 None 2026-10-09 23:43:55,430 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/506 HTTP/1.1" 200 None 2026-10-09 23:43:55,431 [ scc.git] DEBUG Calling 'git fetch origin pull/471/head' 2026-10-09 23:43:56,184 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-10-09 23:43:56,184 [ scc.git] DEBUG * branch refs/pull/471/head -> FETCH_HEAD 2026-10-09 23:43:56,217 [ scc.git] DEBUG Calling 'git fetch origin pull/497/head' 2026-10-09 23:43:57,801 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-10-09 23:43:57,801 [ scc.git] DEBUG * branch refs/pull/497/head -> FETCH_HEAD 2026-10-09 23:43:57,842 [ scc.git] DEBUG Calling 'git fetch origin pull/532/head' 2026-10-09 23:43:58,494 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-10-09 23:43:58,494 [ scc.git] DEBUG * branch refs/pull/532/head -> FETCH_HEAD 2026-10-09 23:43:58,527 [ scc.git] DEBUG ## Unique users: [] 2026-10-09 23:43:58,527 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:43:58,527 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:43:58,540 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...448d042a58da05a522531356cc58c1e35b5744d9' 2026-10-09 23:43:58,653 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:43:58,668 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 471 (Z projection disabled tooltip) 448d042a58da05a522531356cc58c1e35b5744d9' 2026-10-09 23:43:58,997 [ scc.git] DEBUG Auto-merging src/controls/dimension-slider.js 2026-10-09 23:43:59,056 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-09 23:43:59,120 [ scc.git] DEBUG src/controls/dimension-slider.html | 2 +- 2026-10-09 23:43:59,120 [ scc.git] DEBUG src/controls/dimension-slider.js | 20 ++++++++++++++++++++ 2026-10-09 23:43:59,120 [ scc.git] DEBUG 2 files changed, 21 insertions(+), 1 deletion(-) 2026-10-09 23:43:59,312 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:43:59,313 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d801e9c2623a1698a86b11f6c15e3e434417b726' 2026-10-09 23:43:59,423 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:43:59,435 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 497 (ROI Tags) d801e9c2623a1698a86b11f6c15e3e434417b726' 2026-10-09 23:43:59,854 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-09 23:43:59,957 [ scc.git] DEBUG css/app.css | 42 +++- 2026-10-09 23:43:59,958 [ scc.git] DEBUG css/images/tag_icon.png | Bin 0 -> 1414 bytes 2026-10-09 23:43:59,958 [ scc.git] DEBUG css/images/tagset_icon.png | Bin 0 -> 3299 bytes 2026-10-09 23:43:59,958 [ scc.git] DEBUG plugin/omero_iviewer/urls.py | 2 + 2026-10-09 23:43:59,958 [ scc.git] DEBUG plugin/omero_iviewer/views.py | 107 +++++++++ 2026-10-09 23:43:59,958 [ scc.git] DEBUG src/events/events.js | 4 + 2026-10-09 23:43:59,958 [ scc.git] DEBUG src/model/image_info.js | 8 + 2026-10-09 23:43:59,958 [ scc.git] DEBUG src/regions/regions-list.html | 28 ++- 2026-10-09 23:43:59,958 [ scc.git] DEBUG src/regions/regions-list.js | 162 +++++++++++++- 2026-10-09 23:43:59,958 [ scc.git] DEBUG src/regions/regions-tags.html | 142 ++++++++++++ 2026-10-09 23:43:59,958 [ scc.git] DEBUG src/regions/regions-tags.js | 490 ++++++++++++++++++++++++++++++++++++++++++ 2026-10-09 23:43:59,958 [ scc.git] DEBUG src/regions/regions.html | 2 + 2026-10-09 23:43:59,958 [ scc.git] DEBUG 12 files changed, 979 insertions(+), 8 deletions(-) 2026-10-09 23:43:59,958 [ scc.git] DEBUG create mode 100644 css/images/tag_icon.png 2026-10-09 23:43:59,958 [ scc.git] DEBUG create mode 100644 css/images/tagset_icon.png 2026-10-09 23:43:59,958 [ scc.git] DEBUG create mode 100644 src/regions/regions-tags.html 2026-10-09 23:43:59,958 [ scc.git] DEBUG create mode 100644 src/regions/regions-tags.js 2026-10-09 23:44:00,138 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:44:00,138 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...fb88f3a09446141b1d1bc276c87ea6a832ff1b3a' 2026-10-09 23:44:00,250 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:44:00,264 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 532 (Zarr layers) fb88f3a09446141b1d1bc276c87ea6a832ff1b3a' 2026-10-09 23:44:01,027 [ scc.git] DEBUG Auto-merging css/app.css 2026-10-09 23:44:01,027 [ scc.git] DEBUG CONFLICT (content): Merge conflict in css/app.css 2026-10-09 23:44:01,027 [ scc.git] DEBUG Auto-merging package-lock.json 2026-10-09 23:44:01,027 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2026-10-09 23:44:01,027 [ scc.git] DEBUG Auto-merging package.json 2026-10-09 23:44:01,027 [ scc.git] DEBUG Auto-merging src/app/context.js 2026-10-09 23:44:01,027 [ scc.git] DEBUG Auto-merging src/events/events.js 2026-10-09 23:44:01,027 [ scc.git] DEBUG Auto-merging src/model/image_config.js 2026-10-09 23:44:01,027 [ scc.git] DEBUG Auto-merging src/viewers/viewer/Viewer.js 2026-10-09 23:44:01,027 [ scc.git] DEBUG Auto-merging src/viewers/viewer/source/Image.js 2026-10-09 23:44:01,027 [ scc.git] DEBUG Auto-merging webpack.dev.config.js 2026-10-09 23:44:01,055 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-10-09 23:44:01,059 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-10-09 23:44:01,127 [ scc.git] DEBUG Calling 'git reset --hard f76283f9e29305b2b24fb529fee68cb5aac8cbf7' 2026-10-09 23:44:01,577 [ scc.git] DEBUG HEAD is now at f76283f9 merge master -Dorg -Ssuccess-only: PR 497 (ROI Tags) 2026-10-09 23:44:01,800 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:44:01,801 [ scc.git] DEBUG Calling 'git merge-base 0a836211ba48a84aff07486e3d18cfe9c5f52e76 fb88f3a09446141b1d1bc276c87ea6a832ff1b3a' 2026-10-09 23:44:01,900 [ scc.git] DEBUG Calling 'git diff --name-only 0b7eaf71f7e3f5c7289fab4bf857094bdadce1e4..0a836211ba48a84aff07486e3d18cfe9c5f52e76' 2026-10-09 23:44:01,936 [ scc.git] INFO - PR 532 will-moore 'Zarr layers' Conflicting PR. Removed from build [OMERO-plugins-push#106](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/106/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/106/consoleText) for more details. Possible conflicts: - PR #497 will-moore 'ROI Tags' - css/app.css - Upstream changes - package-lock.json - css/app.css --conflicts 2026-10-09 23:44:01,947 [ scc.config] DEBUG Found github.token 2026-10-09 23:44:01,947 [ scc.git] DEBUG Not adding comment to issue #532, already --conflicts. 2026-10-09 23:44:01,947 [ scc.git] DEBUG Calling 'git submodule update' 2026-10-09 23:44:02,087 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:44:02,087 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:44:02,102 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-09 23:44:02,230 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-10-09 23:44:02,412 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f4f0677dd50> has no local changes 2026-10-09 23:44:02,412 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-iviewer Excluded PRs: - PR 420 will-moore 'Add release process to README' (exclude comment) - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment) Updating 7a798cee..0a836211 Previously merged: - PR 574 dependabot[bot] 'Bump minimatch from 3.1.2 to 3.1.5' - PR 573 dependabot[bot] 'Bump serialize-javascript and mocha' - PR 572 dependabot[bot] 'Bump brace-expansion from 1.1.13 to 1.1.21' - PR 571 dependabot[bot] 'Bump fast-uri from 3.1.7 to 3.1.8' - PR 570 dependabot[bot] 'Bump engine.io from 6.6.9 to 6.6.11' - PR 568 dependabot[bot] 'Bump webpack-dev-middleware from 8.1.0 to 8.3.0' - PR 566 dependabot[bot] 'Bump js-yaml from 4.1.0 to 4.3.2' - PR 565 dependabot[bot] 'Bump qs and body-parser' - PR 564 dependabot[bot] 'Bump fast-uri from 3.1.5 to 3.1.7' - PR 567 will-moore 'Basic fix of prev/next shapes when shapes sorted' - PR 562 will-moore 'Keyboard select roi' - PR 563 will-moore 'Use POST data for imgRdef save' - PR 559 dependabot[bot] 'Bump js-yaml and mocha' - PR 558 dependabot[bot] 'Bump fast-uri from 3.1.4 to 3.1.5' - PR 557 dependabot[bot] 'Bump socket.io-parser from 4.2.6 to 4.2.7' - PR 541 will-moore 'Only add channel to tile request string if active' - PR 556 dependabot[bot] 'Bump webpack-dev-server from 5.2.6 to 6.0.0' - PR 554 dependabot[bot] 'Bump http-proxy-middleware from 2.0.9 to 2.0.10' - PR 553 dependabot[bot] 'Bump postcss from 8.5.10 to 8.5.25' - PR 552 dependabot[bot] 'Bump tmp from 0.2.6 to 0.2.7' - PR 551 dependabot[bot] 'Bump body-parser from 1.20.5 to 1.20.6' - PR 550 dependabot[bot] 'Bump webpack-dev-server from 5.2.4 to 5.2.6' - PR 549 dependabot[bot] 'Bump shell-quote from 1.8.4 to 1.10.0' - PR 548 dependabot[bot] 'Bump fast-uri from 3.1.2 to 3.1.4' - PR 547 dependabot[bot] 'Bump websocket-driver from 0.7.4 to 0.7.5' - PR 540 dependabot[bot] 'Bump @babel/core from 7.5.4 to 7.29.6' - PR 539 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter' - PR 537 dependabot[bot] 'Bump launch-editor from 2.13.2 to 2.14.1' - PR 535 dependabot[bot] 'Bump tmp and eslint' - PR 527 PollenGeo 'Add grid overlay feature with configurable cell size and labels' - PR 534 will-moore 'Fix settings.md link to master branch. Move iviewer redirect settings' - PR 533 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter' - PR 530 dependabot[bot] 'Bump webpack-dev-server from 4.13.2 to 5.2.4' - PR 528 dependabot[bot] 'Bump fast-uri from 3.1.0 to 3.1.2' - PR 529 will-moore 'Image id and roi id initial params' - PR 526 will-moore 'Add keyboard handling for Left, Right, Up, Down Arrows to pan' - PR 525 dependabot[bot] 'Bump postcss from 8.4.31 to 8.5.10' - PR 524 dependabot[bot] 'Bump protocol-buffers-schema from 3.3.2 to 3.6.1' - PR 523 dependabot[bot] 'Bump follow-redirects from 1.15.6 to 1.16.0' - PR 522 dependabot[bot] 'Bump lodash from 4.17.21 to 4.18.1' - PR 521 dependabot[bot] 'Bump brace-expansion from 1.1.11 to 1.1.13' - PR 520 dependabot[bot] 'Bump node-forge from 1.3.1 to 1.4.0' - PR 519 dependabot[bot] 'Bump picomatch from 2.3.1 to 2.3.2' - PR 518 dependabot[bot] 'Bump ajv from 6.12.6 to 6.14.0' - PR 514 Tom-TBT 'Fix where interpolate_pixels server config is read from' - PR 513 jburel 'Bump Python version' - PR 512 jburel 'Replace manual changelog by automated GH release step' - PR 465 will-moore 'Save as Figure' - PR 517 will-moore 'Fix roi link permissions' - PR 516 dependabot[bot] 'Bump socket.io-parser from 4.2.4 to 4.2.6' - PR 510 joshmoore 'Re-enable omero-test-infra' - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 471 will-moore 'Z projection disabled tooltip' - PR 497 will-moore 'ROI Tags' Conflicting PRs (not included): - PR 532 will-moore 'Zarr layers' Generated by OMERO-plugins-push#106 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/106/)' 2026-10-09 23:44:02,590 [ scc.git] DEBUG [detached HEAD 28d18d76] merge master -Dorg -Ssuccess-only 2026-10-09 23:44:02,593 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:44:02,593 [ scc.repo] DEBUG ## PRs found: 2026-10-09 23:44:02,980 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/pulls HTTP/1.1" 200 None 2026-10-09 23:44:03,509 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/98 HTTP/1.1" 200 None 2026-10-09 23:44:04,018 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/98/comments HTTP/1.1" 200 None 2026-10-09 23:44:04,019 [ scc.repo] DEBUG # ... Include label: include 2026-10-09 23:44:04,577 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1fa070ad0afa0f3944fa2513d38db6da1f5bc783?page=1 HTTP/1.1" 200 None 2026-10-09 23:44:05,078 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1fa070ad0afa0f3944fa2513d38db6da1f5bc783/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-09 23:44:05,576 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1fa070ad0afa0f3944fa2513d38db6da1f5bc783?page=1 HTTP/1.1" 200 None 2026-10-09 23:44:06,077 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1fa070ad0afa0f3944fa2513d38db6da1f5bc783?per_page=1 HTTP/1.1" 200 2 2026-10-09 23:44:06,077 [ scc.repo] DEBUG - PR 98 JoshuaFortriede 'use namespace with keys' 2026-10-09 23:44:06,593 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/97 HTTP/1.1" 200 None 2026-10-09 23:44:07,098 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/97/comments HTTP/1.1" 200 None 2026-10-09 23:44:07,099 [ scc.repo] DEBUG # ... Include label: include 2026-10-09 23:44:07,695 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/3854f1cfa0cbe79675dad16ad34fce109524eb28?page=1 HTTP/1.1" 200 None 2026-10-09 23:44:08,191 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/3854f1cfa0cbe79675dad16ad34fce109524eb28/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-09 23:44:08,676 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/3854f1cfa0cbe79675dad16ad34fce109524eb28?page=1 HTTP/1.1" 200 None 2026-10-09 23:44:09,150 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/3854f1cfa0cbe79675dad16ad34fce109524eb28?per_page=1 HTTP/1.1" 200 2 2026-10-09 23:44:09,150 [ scc.repo] DEBUG - PR 97 JoshuaFortriede 'BUG Fix: use HTML value to replace HTML' 2026-10-09 23:44:09,675 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95 HTTP/1.1" 200 None 2026-10-09 23:44:10,181 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95/comments HTTP/1.1" 200 None 2026-10-09 23:44:10,182 [ scc.repo] DEBUG # ... Include label: dependencies 2026-10-09 23:44:10,834 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99?page=1 HTTP/1.1" 200 None 2026-10-09 23:44:11,447 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-09 23:44:12,029 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-10-09 23:44:12,740 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99?page=1 HTTP/1.1" 200 None 2026-10-09 23:44:13,188 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/38cc352a088eaedfaa2dd8874c4f200f98f41a99?per_page=1 HTTP/1.1" 200 2 2026-10-09 23:44:13,188 [ scc.repo] DEBUG - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-10-09 23:44:13,701 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/94 HTTP/1.1" 200 None 2026-10-09 23:44:14,253 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d?page=1 HTTP/1.1" 200 None 2026-10-09 23:44:14,756 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-09 23:44:15,226 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d?page=1 HTTP/1.1" 200 None 2026-10-09 23:44:15,701 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1896cfebc876f939f8d83bd1cf56b8584ff2921d?per_page=1 HTTP/1.1" 200 2 2026-10-09 23:44:15,702 [ scc.repo] DEBUG - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-10-09 23:44:16,225 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None 2026-10-09 23:44:16,754 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None 2026-10-09 23:44:16,756 [ scc.repo] DEBUG ## Branches found: 2026-10-09 23:44:16,756 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr 2026-10-09 23:44:16,757 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:44:16,757 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:44:16,774 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-10-09 23:44:16,794 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-10-09 23:44:16,794 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-10-09 23:44:16,816 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-10-09 23:44:16,870 [ scc.git] DEBUG Already up to date. 2026-10-09 23:44:16,870 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head' 2026-10-09 23:44:17,336 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2026-10-09 23:44:17,336 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD 2026-10-09 23:44:17,364 [ scc.git] DEBUG Calling 'git fetch origin pull/95/head' 2026-10-09 23:44:17,756 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2026-10-09 23:44:17,757 [ scc.git] DEBUG * branch refs/pull/95/head -> FETCH_HEAD 2026-10-09 23:44:17,788 [ scc.git] DEBUG Calling 'git fetch origin pull/97/head' 2026-10-09 23:44:18,381 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2026-10-09 23:44:18,381 [ scc.git] DEBUG * branch refs/pull/97/head -> FETCH_HEAD 2026-10-09 23:44:18,407 [ scc.git] DEBUG Calling 'git fetch origin pull/98/head' 2026-10-09 23:44:18,911 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2026-10-09 23:44:18,911 [ scc.git] DEBUG * branch refs/pull/98/head -> FETCH_HEAD 2026-10-09 23:44:18,939 [ scc.git] DEBUG ## Unique users: [] 2026-10-09 23:44:18,939 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:44:18,939 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:44:18,953 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d' 2026-10-09 23:44:18,979 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:44:18,992 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d' 2026-10-09 23:44:19,181 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-09 23:44:19,242 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-10-09 23:44:19,242 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-10-09 23:44:19,426 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:44:19,426 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38cc352a088eaedfaa2dd8874c4f200f98f41a99' 2026-10-09 23:44:19,473 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:44:19,488 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 95 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 38cc352a088eaedfaa2dd8874c4f200f98f41a99' 2026-10-09 23:44:19,678 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml 2026-10-09 23:44:19,678 [ scc.git] DEBUG CONFLICT (content): Merge conflict in .github/workflows/publish_pypi.yml 2026-10-09 23:44:19,706 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-10-09 23:44:19,707 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-10-09 23:44:19,738 [ scc.git] DEBUG Calling 'git reset --hard 5a5ebd88c85fad6b3aa33ced92d9dd4fffb4f3aa' 2026-10-09 23:44:19,928 [ scc.git] DEBUG HEAD is now at 5a5ebd8 merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 2026-10-09 23:44:20,120 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:44:20,120 [ scc.git] DEBUG Calling 'git merge-base 0a557da89145e65db313c1721a26cb43e490dd8a 38cc352a088eaedfaa2dd8874c4f200f98f41a99' 2026-10-09 23:44:20,147 [ scc.git] DEBUG Calling 'git diff --name-only 0a557da89145e65db313c1721a26cb43e490dd8a..0a557da89145e65db313c1721a26cb43e490dd8a' 2026-10-09 23:44:20,172 [ scc.git] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Conflicting PR. Removed from build [OMERO-plugins-push#106](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/106/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/106/consoleText) for more details. Possible conflicts: - PR #94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' - .github/workflows/publish_pypi.yml --conflicts 2026-10-09 23:44:20,184 [ scc.config] DEBUG Found github.token 2026-10-09 23:44:20,185 [ scc.git] DEBUG Not adding comment to issue #95, already --conflicts. 2026-10-09 23:44:20,185 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3854f1cfa0cbe79675dad16ad34fce109524eb28' 2026-10-09 23:44:20,229 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:44:20,248 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 97 (BUG Fix: use HTML value to replace HTML) 3854f1cfa0cbe79675dad16ad34fce109524eb28' 2026-10-09 23:44:20,446 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-09 23:44:20,516 [ scc.git] DEBUG .../templates/webclient/data/includes/right_plugin.general.js.html | 4 +++- 2026-10-09 23:44:20,516 [ scc.git] DEBUG 1 file changed, 3 insertions(+), 1 deletion(-) 2026-10-09 23:44:20,703 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:44:20,704 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1fa070ad0afa0f3944fa2513d38db6da1f5bc783' 2026-10-09 23:44:20,756 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:44:20,776 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 98 (use namespace with keys) 1fa070ad0afa0f3944fa2513d38db6da1f5bc783' 2026-10-09 23:44:20,995 [ scc.git] DEBUG Auto-merging omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html 2026-10-09 23:44:21,063 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-09 23:44:21,140 [ scc.git] DEBUG .../webclient/data/includes/right_plugin.general.js.html | 11 ++++++++--- 2026-10-09 23:44:21,140 [ scc.git] DEBUG 1 file changed, 8 insertions(+), 3 deletions(-) 2026-10-09 23:44:21,332 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:44:21,333 [ scc.git] DEBUG Calling 'git submodule update' 2026-10-09 23:44:21,461 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:44:21,461 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:44:21,474 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-09 23:44:21,601 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-10-09 23:44:21,678 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f4f0674cd90> has no local changes 2026-10-09 23:44:21,678 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-mapr Excluded PRs: - PR 79 will-moore 'Right panel title' (exclude comment) - PR 74 will-moore 'mapr extension of webclient' (exclude comment) Already up to date. Merged PRs: - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' - PR 97 JoshuaFortriede 'BUG Fix: use HTML value to replace HTML' - PR 98 JoshuaFortriede 'use namespace with keys' Conflicting PRs (not included): - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#106 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/106/)' 2026-10-09 23:44:21,844 [ scc.git] DEBUG [detached HEAD 4e75660] merge master -Dorg -Ssuccess-only 2026-10-09 23:44:21,846 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:44:21,846 [ scc.repo] DEBUG ## PRs found: 2026-10-09 23:44:22,214 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None 2026-10-09 23:44:22,727 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/92 HTTP/1.1" 200 None 2026-10-09 23:44:23,230 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/92/comments HTTP/1.1" 200 None 2026-10-09 23:44:23,853 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f?page=1 HTTP/1.1" 200 None 2026-10-09 23:44:24,396 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-09 23:44:24,880 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f?page=1 HTTP/1.1" 200 None 2026-10-09 23:44:25,344 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/64d33da6022f537d572d4f69a5cec86377b6e78f?per_page=1 HTTP/1.1" 200 2 2026-10-09 23:44:25,345 [ scc.repo] DEBUG - PR 92 dominikl 'add resolve_rois to projectwrapper' 2026-10-09 23:44:25,858 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None 2026-10-09 23:44:26,360 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None 2026-10-09 23:44:26,938 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7?page=1 HTTP/1.1" 200 None 2026-10-09 23:44:27,446 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-09 23:44:27,925 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7?page=1 HTTP/1.1" 200 None 2026-10-09 23:44:28,382 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2 2026-10-09 23:44:28,382 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate' 2026-10-09 23:44:28,382 [ scc.repo] DEBUG ## Branches found: 2026-10-09 23:44:28,382 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata 2026-10-09 23:44:28,383 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:44:28,383 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:44:28,406 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-10-09 23:44:28,426 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-10-09 23:44:28,426 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-10-09 23:44:28,541 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-10-09 23:44:28,861 [ scc.git] DEBUG Updating 3cd120c..6a653e4 2026-10-09 23:44:29,525 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/95 HTTP/1.1" 200 None 2026-10-09 23:44:30,353 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/94 HTTP/1.1" 200 None 2026-10-09 23:44:31,108 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None 2026-10-09 23:44:31,109 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head' 2026-10-09 23:44:31,916 [ scc.git] DEBUG From https://github.com/ome/omero-metadata 2026-10-09 23:44:31,916 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD 2026-10-09 23:44:31,947 [ scc.git] DEBUG Calling 'git fetch origin pull/92/head' 2026-10-09 23:44:32,408 [ scc.git] DEBUG From https://github.com/ome/omero-metadata 2026-10-09 23:44:32,408 [ scc.git] DEBUG * branch refs/pull/92/head -> FETCH_HEAD 2026-10-09 23:44:32,437 [ scc.git] DEBUG ## Unique users: [] 2026-10-09 23:44:32,437 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:44:32,437 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:44:32,452 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7' 2026-10-09 23:44:32,525 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:44:32,541 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7' 2026-10-09 23:44:32,789 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py 2026-10-09 23:44:32,790 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py 2026-10-09 23:44:32,790 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py 2026-10-09 23:44:32,810 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-10-09 23:44:32,812 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-10-09 23:44:32,844 [ scc.git] DEBUG Calling 'git reset --hard 6a653e49e3589ccb463166506896639f6f0a5a2b' 2026-10-09 23:44:32,987 [ scc.git] DEBUG HEAD is now at 6a653e4 Fix workflow permission indentation 2026-10-09 23:44:33,187 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:44:33,187 [ scc.git] DEBUG Calling 'git merge-base 6a653e49e3589ccb463166506896639f6f0a5a2b 78e55539b68e351ed5ef202854718b49a37729a7' 2026-10-09 23:44:33,245 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..6a653e49e3589ccb463166506896639f6f0a5a2b' 2026-10-09 23:44:33,278 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate' Conflicting PR. Removed from build [OMERO-plugins-push#106](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/106/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/106/consoleText) for more details. Possible conflicts: - Upstream changes - src/omero_metadata/populate.py --conflicts 2026-10-09 23:44:33,292 [ scc.config] DEBUG Found github.token 2026-10-09 23:44:33,292 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts. 2026-10-09 23:44:33,292 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...64d33da6022f537d572d4f69a5cec86377b6e78f' 2026-10-09 23:44:33,370 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:44:33,384 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 92 (add resolve_rois to projectwrapper) 64d33da6022f537d572d4f69a5cec86377b6e78f' 2026-10-09 23:44:33,610 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-09 23:44:33,685 [ scc.git] DEBUG src/omero_metadata/populate.py | 55 +++++++++++++++++++++++++++++++++++++++++- 2026-10-09 23:44:33,685 [ scc.git] DEBUG 1 file changed, 54 insertions(+), 1 deletion(-) 2026-10-09 23:44:33,877 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:44:33,878 [ scc.git] DEBUG Calling 'git submodule update' 2026-10-09 23:44:33,997 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:44:33,997 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:44:34,018 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-09 23:44:34,141 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-10-09 23:44:34,206 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f4f0676ce50> has no local changes 2026-10-09 23:44:34,206 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-metadata Updating 3cd120c..6a653e4 Previously merged: - PR 95 sbesson 'Remove manual CHANGELOG in favor of automated GitHub releases' - PR 94 sbesson 'Cap pandas to 2.x and clean up unused dependencies' - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 92 dominikl 'add resolve_rois to projectwrapper' Conflicting PRs (not included): - PR 64 will-moore 'Support images_by_name for Screen and Plate' Generated by OMERO-plugins-push#106 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/106/)' 2026-10-09 23:44:34,387 [ scc.git] DEBUG [detached HEAD 8a66b84] merge master -Dorg -Ssuccess-only 2026-10-09 23:44:34,389 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:44:34,389 [ scc.repo] DEBUG ## PRs found: 2026-10-09 23:44:34,767 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None 2026-10-09 23:44:35,265 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None 2026-10-09 23:44:35,891 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0?page=1 HTTP/1.1" 200 None 2026-10-09 23:44:36,429 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-09 23:44:36,903 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0?page=1 HTTP/1.1" 200 None 2026-10-09 23:44:37,368 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2 2026-10-09 23:44:37,368 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-10-09 23:44:37,898 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None 2026-10-09 23:44:37,899 [ scc.repo] DEBUG # ... Include label: dependencies 2026-10-09 23:44:38,529 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80?page=1 HTTP/1.1" 200 None 2026-10-09 23:44:39,030 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-09 23:44:39,540 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80?page=1 HTTP/1.1" 200 None 2026-10-09 23:44:39,997 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2 2026-10-09 23:44:39,998 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' 2026-10-09 23:44:40,528 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None 2026-10-09 23:44:40,529 [ scc.repo] DEBUG # ... Include label: dependencies 2026-10-09 23:44:41,162 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0?page=1 HTTP/1.1" 200 None 2026-10-09 23:44:41,651 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-09 23:44:42,161 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0?page=1 HTTP/1.1" 200 None 2026-10-09 23:44:42,636 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2 2026-10-09 23:44:42,636 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' 2026-10-09 23:44:43,151 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None 2026-10-09 23:44:43,696 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None 2026-10-09 23:44:44,172 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None 2026-10-09 23:44:44,670 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None 2026-10-09 23:44:45,185 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None 2026-10-09 23:44:45,717 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None 2026-10-09 23:44:46,231 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None 2026-10-09 23:44:46,233 [ scc.repo] DEBUG ## Branches found: 2026-10-09 23:44:46,233 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade 2026-10-09 23:44:46,234 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:44:46,234 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:44:46,253 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-10-09 23:44:46,269 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-10-09 23:44:46,269 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-10-09 23:44:46,286 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-10-09 23:44:46,335 [ scc.git] DEBUG Already up to date. 2026-10-09 23:44:46,335 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head' 2026-10-09 23:44:46,779 [ scc.git] DEBUG From https://github.com/ome/omero-parade 2026-10-09 23:44:46,779 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD 2026-10-09 23:44:46,807 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head' 2026-10-09 23:44:47,208 [ scc.git] DEBUG From https://github.com/ome/omero-parade 2026-10-09 23:44:47,208 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD 2026-10-09 23:44:47,233 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head' 2026-10-09 23:44:47,667 [ scc.git] DEBUG From https://github.com/ome/omero-parade 2026-10-09 23:44:47,667 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD 2026-10-09 23:44:47,696 [ scc.git] DEBUG ## Unique users: [] 2026-10-09 23:44:47,696 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:44:47,696 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:44:47,711 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0' 2026-10-09 23:44:47,746 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:44:47,761 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0' 2026-10-09 23:44:48,004 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-09 23:44:48,076 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++---------------------------- 2026-10-09 23:44:48,076 [ scc.git] DEBUG package.json | 2 +- 2026-10-09 23:44:48,077 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-) 2026-10-09 23:44:48,266 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:44:48,267 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80' 2026-10-09 23:44:48,297 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:44:48,312 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80' 2026-10-09 23:44:48,498 [ scc.git] DEBUG Auto-merging package-lock.json 2026-10-09 23:44:48,498 [ scc.git] DEBUG Auto-merging package.json 2026-10-09 23:44:48,575 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-09 23:44:48,648 [ scc.git] DEBUG package-lock.json | 18 ++++++++++-------- 2026-10-09 23:44:48,649 [ scc.git] DEBUG package.json | 2 +- 2026-10-09 23:44:48,649 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-) 2026-10-09 23:44:48,832 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:44:48,833 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0' 2026-10-09 23:44:48,865 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:44:48,877 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0' 2026-10-09 23:44:49,039 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-09 23:44:49,091 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-10-09 23:44:49,091 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-10-09 23:44:49,270 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:44:49,271 [ scc.git] DEBUG Calling 'git submodule update' 2026-10-09 23:44:49,391 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:44:49,391 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:44:49,403 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-09 23:44:49,506 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-10-09 23:44:49,572 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f4f0677d8d0> has no local changes 2026-10-09 23:44:49,572 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-parade Excluded PRs: - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft) - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment) - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment) - PR 39 chris-allan 'Expand all for Screens' (exclude comment) Already up to date. Merged PRs: - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Generated by OMERO-plugins-push#106 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/106/)' 2026-10-09 23:44:49,681 [ scc.git] DEBUG [detached HEAD b1366ab] merge master -Dorg -Ssuccess-only 2026-10-09 23:44:49,682 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:44:49,682 [ scc.repo] DEBUG ## PRs found: 2026-10-09 23:44:49,990 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None 2026-10-09 23:44:50,750 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/16 HTTP/1.1" 200 None 2026-10-09 23:44:50,751 [ scc.repo] DEBUG # ... Include label: dependencies 2026-10-09 23:44:51,386 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e?page=1 HTTP/1.1" 200 None 2026-10-09 23:44:52,112 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-09 23:44:52,638 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-10-09 23:44:53,197 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e?page=1 HTTP/1.1" 200 None 2026-10-09 23:44:53,654 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/5381b9f25e1666d81d236039a1317276291e9b2e?per_page=1 HTTP/1.1" 200 2 2026-10-09 23:44:53,654 [ scc.repo] DEBUG - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-10-09 23:44:53,654 [ scc.repo] DEBUG ## Branches found: 2026-10-09 23:44:53,654 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools 2026-10-09 23:44:53,655 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:44:53,656 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:44:53,673 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-10-09 23:44:53,692 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-10-09 23:44:53,692 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-10-09 23:44:53,712 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-10-09 23:44:53,774 [ scc.git] DEBUG Already up to date. 2026-10-09 23:44:53,774 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head' 2026-10-09 23:44:54,191 [ scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools 2026-10-09 23:44:54,191 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD 2026-10-09 23:44:54,214 [ scc.git] DEBUG ## Unique users: [] 2026-10-09 23:44:54,215 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:44:54,215 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:44:54,227 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5381b9f25e1666d81d236039a1317276291e9b2e' 2026-10-09 23:44:54,257 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:44:54,274 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 5381b9f25e1666d81d236039a1317276291e9b2e' 2026-10-09 23:44:54,465 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-09 23:44:54,524 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-10-09 23:44:54,524 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-10-09 23:44:54,725 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:44:54,726 [ scc.git] DEBUG Calling 'git submodule update' 2026-10-09 23:44:54,841 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:44:54,841 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:44:54,854 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-09 23:44:54,963 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-10-09 23:44:55,006 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f4f0788f390> has no local changes 2026-10-09 23:44:55,007 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-prometheus-tools Already up to date. Merged PRs: - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#106 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/106/)' 2026-10-09 23:44:55,166 [ scc.git] DEBUG [detached HEAD f56d53f] merge master -Dorg -Ssuccess-only 2026-10-09 23:44:55,168 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:44:55,169 [ scc.repo] DEBUG ## PRs found: 2026-10-09 23:44:55,466 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None 2026-10-09 23:44:55,988 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None 2026-10-09 23:44:55,989 [ scc.repo] DEBUG ## Branches found: 2026-10-09 23:44:55,989 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois 2026-10-09 23:44:55,990 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:44:55,990 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:44:56,010 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-10-09 23:44:56,029 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-10-09 23:44:56,029 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-10-09 23:44:56,103 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-10-09 23:44:56,329 [ scc.git] DEBUG Updating bdfeb5e..fc9ff96 2026-10-09 23:44:56,969 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls/36 HTTP/1.1" 200 None 2026-10-09 23:44:57,918 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls/35 HTTP/1.1" 200 None 2026-10-09 23:44:57,919 [ scc.git] DEBUG ## Unique users: [] 2026-10-09 23:44:57,919 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:44:57,919 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:44:57,941 [ scc.git] DEBUG Calling 'git submodule update' 2026-10-09 23:44:58,067 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:44:58,067 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:44:58,079 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-09 23:44:58,189 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-10-09 23:44:58,245 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f4f079882d0> has no local changes 2026-10-09 23:44:58,246 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-rois Excluded PRs: - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) Updating bdfeb5e..fc9ff96 Previously merged: - PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml' - PR 35 will-moore 'Add roi to array functions' Generated by OMERO-plugins-push#106 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/106/)' 2026-10-09 23:44:58,376 [ scc.git] DEBUG [detached HEAD 8463500] merge master -Dorg -Ssuccess-only 2026-10-09 23:44:58,378 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:44:58,378 [ scc.repo] DEBUG ## PRs found: 2026-10-09 23:44:58,746 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None 2026-10-09 23:44:59,282 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/22 HTTP/1.1" 200 None 2026-10-09 23:44:59,283 [ scc.repo] DEBUG # ... Include label: dependencies 2026-10-09 23:44:59,949 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa?page=1 HTTP/1.1" 200 None 2026-10-09 23:45:00,558 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-09 23:45:01,131 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-10-09 23:45:01,675 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa?page=1 HTTP/1.1" 200 None 2026-10-09 23:45:02,168 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/8b27e47a330555e99e9594f0c4b546946f4f98aa?per_page=1 HTTP/1.1" 200 2 2026-10-09 23:45:02,169 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-10-09 23:45:02,714 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None 2026-10-09 23:45:03,198 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None 2026-10-09 23:45:03,810 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?page=1 HTTP/1.1" 200 None 2026-10-09 23:45:04,301 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-09 23:45:04,778 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?page=1 HTTP/1.1" 200 None 2026-10-09 23:45:05,232 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2 2026-10-09 23:45:05,232 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)' 2026-10-09 23:45:05,232 [ scc.repo] DEBUG ## Branches found: 2026-10-09 23:45:05,232 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup 2026-10-09 23:45:05,234 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:45:05,234 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:45:05,255 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-10-09 23:45:05,276 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-10-09 23:45:05,276 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-10-09 23:45:05,301 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-10-09 23:45:05,366 [ scc.git] DEBUG Already up to date. 2026-10-09 23:45:05,367 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head' 2026-10-09 23:45:05,926 [ scc.git] DEBUG From https://github.com/ome/omero-signup 2026-10-09 23:45:05,926 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD 2026-10-09 23:45:05,948 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head' 2026-10-09 23:45:06,366 [ scc.git] DEBUG From https://github.com/ome/omero-signup 2026-10-09 23:45:06,366 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD 2026-10-09 23:45:06,389 [ scc.git] DEBUG ## Unique users: [] 2026-10-09 23:45:06,389 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:45:06,389 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:45:06,401 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d' 2026-10-09 23:45:06,430 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:45:06,446 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d' 2026-10-09 23:45:06,788 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py 2026-10-09 23:45:06,788 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py 2026-10-09 23:45:06,788 [ scc.git] DEBUG Auto-merging omero_signup/urls.py 2026-10-09 23:45:06,789 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py 2026-10-09 23:45:06,789 [ scc.git] DEBUG Auto-merging omero_signup/views.py 2026-10-09 23:45:06,789 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py 2026-10-09 23:45:06,789 [ scc.git] DEBUG Auto-merging setup.py 2026-10-09 23:45:06,789 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py 2026-10-09 23:45:06,819 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-10-09 23:45:06,821 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-10-09 23:45:06,860 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e' 2026-10-09 23:45:07,079 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build 2026-10-09 23:45:07,263 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:45:07,264 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d' 2026-10-09 23:45:07,293 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e' 2026-10-09 23:45:07,328 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)' Conflicting PR. Removed from build [OMERO-plugins-push#106](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/106/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/106/consoleText) for more details. Possible conflicts: - Upstream changes - omero_signup/signup_settings.py - omero_signup/views.py - omero_signup/urls.py - setup.py --conflicts 2026-10-09 23:45:07,342 [ scc.config] DEBUG Found github.token 2026-10-09 23:45:07,342 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts. 2026-10-09 23:45:07,343 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8b27e47a330555e99e9594f0c4b546946f4f98aa' 2026-10-09 23:45:07,366 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:45:07,389 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8b27e47a330555e99e9594f0c4b546946f4f98aa' 2026-10-09 23:45:07,580 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-09 23:45:07,643 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-10-09 23:45:07,643 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-10-09 23:45:07,820 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:45:07,821 [ scc.git] DEBUG Calling 'git submodule update' 2026-10-09 23:45:07,954 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:45:07,954 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:45:07,966 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-09 23:45:08,077 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-10-09 23:45:08,127 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f4f067cc950> has no local changes 2026-10-09 23:45:08,127 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-signup Already up to date. Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Conflicting PRs (not included): - PR 14 manics 'Add pre-commit (black, flake8)' Generated by OMERO-plugins-push#106 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/106/)' 2026-10-09 23:45:08,281 [ scc.git] DEBUG [detached HEAD f7ff931] merge master -Dorg -Ssuccess-only 2026-10-09 23:45:08,283 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:45:08,283 [ scc.repo] DEBUG ## PRs found: 2026-10-09 23:45:08,672 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None 2026-10-09 23:45:09,175 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None 2026-10-09 23:45:09,676 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None 2026-10-09 23:45:10,158 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74/comments HTTP/1.1" 200 None 2026-10-09 23:45:10,808 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623?page=1 HTTP/1.1" 200 None 2026-10-09 23:45:11,332 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-09 23:45:11,810 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623?page=1 HTTP/1.1" 200 None 2026-10-09 23:45:12,283 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/c18c080227e97899382d3464baa7c7885a621623?per_page=1 HTTP/1.1" 200 2 2026-10-09 23:45:12,284 [ scc.repo] DEBUG - PR 74 joshmoore 'Add 'ms' target for ./docker' 2026-10-09 23:45:12,284 [ scc.repo] DEBUG ## Branches found: 2026-10-09 23:45:12,284 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra 2026-10-09 23:45:12,285 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:45:12,285 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:45:12,303 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-10-09 23:45:12,332 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-10-09 23:45:12,332 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-10-09 23:45:12,371 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-10-09 23:45:12,552 [ scc.git] DEBUG Updating cda3ec6..c8a0015 2026-10-09 23:45:13,103 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/84 HTTP/1.1" 200 None 2026-10-09 23:45:14,003 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/82 HTTP/1.1" 200 None 2026-10-09 23:45:14,855 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/81 HTTP/1.1" 200 None 2026-10-09 23:45:14,954 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head' 2026-10-09 23:45:15,535 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra 2026-10-09 23:45:15,536 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD 2026-10-09 23:45:15,564 [ scc.git] DEBUG ## Unique users: [] 2026-10-09 23:45:15,564 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:45:15,564 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:45:15,578 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c18c080227e97899382d3464baa7c7885a621623' 2026-10-09 23:45:15,613 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:45:15,630 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (Add 'ms' target for ./docker) c18c080227e97899382d3464baa7c7885a621623' 2026-10-09 23:45:15,831 [ scc.git] DEBUG Auto-merging .github/workflows/main.yml 2026-10-09 23:45:15,897 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-09 23:45:15,979 [ scc.git] DEBUG .github/workflows/main.yml | 8 ++++++++ 2026-10-09 23:45:15,979 [ scc.git] DEBUG docker | 22 ++++++++++++++++++++++ 2026-10-09 23:45:15,979 [ scc.git] DEBUG ms/compose.yml | 11 +++++++++++ 2026-10-09 23:45:15,979 [ scc.git] DEBUG ms/example/Dockerfile | 13 +++++++++++++ 2026-10-09 23:45:15,979 [ scc.git] DEBUG ms/test | 2 ++ 2026-10-09 23:45:15,979 [ scc.git] DEBUG 5 files changed, 56 insertions(+) 2026-10-09 23:45:15,979 [ scc.git] DEBUG create mode 100644 ms/compose.yml 2026-10-09 23:45:15,979 [ scc.git] DEBUG create mode 100644 ms/example/Dockerfile 2026-10-09 23:45:15,979 [ scc.git] DEBUG create mode 100755 ms/test 2026-10-09 23:45:16,189 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:45:16,190 [ scc.git] DEBUG Calling 'git submodule update' 2026-10-09 23:45:16,319 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:45:16,319 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:45:16,331 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-09 23:45:16,454 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-10-09 23:45:16,526 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f4f079937d0> has no local changes 2026-10-09 23:45:16,526 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: openmicroscopy/omero-test-infra Excluded PRs: - PR 75 marimeireles 'Microservices' (user: marimeireles) Updating cda3ec6..c8a0015 Previously merged: - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT' - PR 82 jburel 'Upgrade python' - PR 81 erickmartins 'add ulimits to omero-server container' Merged PRs: - PR 74 joshmoore 'Add 'ms' target for ./docker' Generated by OMERO-plugins-push#106 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/106/)' 2026-10-09 23:45:16,667 [ scc.git] DEBUG [detached HEAD a1bce80] merge master -Dorg -Ssuccess-only 2026-10-09 23:45:16,669 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:45:16,669 [ scc.repo] DEBUG ## PRs found: 2026-10-09 23:45:16,989 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 None 2026-10-09 23:45:17,522 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/issues/14 HTTP/1.1" 200 None 2026-10-09 23:45:17,523 [ scc.repo] DEBUG # ... Include label: dependencies 2026-10-09 23:45:18,193 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?page=1 HTTP/1.1" 200 None 2026-10-09 23:45:18,793 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-09 23:45:19,370 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-10-09 23:45:19,885 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?page=1 HTTP/1.1" 200 None 2026-10-09 23:45:20,361 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/statuses/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?per_page=1 HTTP/1.1" 200 2 2026-10-09 23:45:20,362 [ scc.repo] DEBUG - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-10-09 23:45:20,362 [ scc.repo] DEBUG ## Branches found: 2026-10-09 23:45:20,362 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload 2026-10-09 23:45:20,363 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:45:20,363 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:45:20,389 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-10-09 23:45:20,407 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-10-09 23:45:20,407 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-10-09 23:45:20,427 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-10-09 23:45:20,486 [ scc.git] DEBUG Already up to date. 2026-10-09 23:45:20,486 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head' 2026-10-09 23:45:20,970 [ scc.git] DEBUG From https://github.com/ome/omero-upload 2026-10-09 23:45:20,970 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD 2026-10-09 23:45:20,998 [ scc.git] DEBUG ## Unique users: [] 2026-10-09 23:45:20,999 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:45:20,999 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:45:21,020 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1a4dbe9a31854f4f65c509ea929debf3319ba1ea' 2026-10-09 23:45:21,047 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:45:21,063 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 1a4dbe9a31854f4f65c509ea929debf3319ba1ea' 2026-10-09 23:45:21,321 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-09 23:45:21,389 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-10-09 23:45:21,389 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-10-09 23:45:21,565 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:45:21,566 [ scc.git] DEBUG Calling 'git submodule update' 2026-10-09 23:45:21,705 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:45:21,706 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:45:21,721 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-09 23:45:21,849 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-10-09 23:45:21,911 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f4f067de010> has no local changes 2026-10-09 23:45:21,911 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-upload Already up to date. Merged PRs: - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#106 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/106/)' 2026-10-09 23:45:22,069 [ scc.git] DEBUG [detached HEAD 6a78aa3] merge master -Dorg -Ssuccess-only 2026-10-09 23:45:22,072 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:45:22,072 [ scc.repo] DEBUG ## PRs found: 2026-10-09 23:45:22,397 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 None 2026-10-09 23:45:22,927 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/issues/22 HTTP/1.1" 200 None 2026-10-09 23:45:22,928 [ scc.repo] DEBUG # ... Include label: dependencies 2026-10-09 23:45:23,582 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902?page=1 HTTP/1.1" 200 None 2026-10-09 23:45:24,120 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-09 23:45:24,623 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-10-09 23:45:25,119 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902?page=1 HTTP/1.1" 200 None 2026-10-09 23:45:25,593 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/statuses/2ee819462af52bf2878fadf06d6ebdbafb8f1902?per_page=1 HTTP/1.1" 200 2 2026-10-09 23:45:25,594 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-10-09 23:45:25,594 [ scc.repo] DEBUG ## Branches found: 2026-10-09 23:45:25,594 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope 2026-10-09 23:45:25,595 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:45:25,595 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:45:25,617 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-10-09 23:45:25,636 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-10-09 23:45:25,636 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-10-09 23:45:25,686 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-10-09 23:45:25,882 [ scc.git] DEBUG Updating deab817..160d894 2026-10-09 23:45:26,545 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None 2026-10-09 23:45:26,651 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head' 2026-10-09 23:45:27,116 [ scc.git] DEBUG From https://github.com/ome/omero-virtual-microscope 2026-10-09 23:45:27,116 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD 2026-10-09 23:45:27,145 [ scc.git] DEBUG ## Unique users: [] 2026-10-09 23:45:27,145 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:45:27,145 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:45:27,161 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee819462af52bf2878fadf06d6ebdbafb8f1902' 2026-10-09 23:45:27,182 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:45:27,195 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 2ee819462af52bf2878fadf06d6ebdbafb8f1902' 2026-10-09 23:45:27,393 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-09 23:45:27,453 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-10-09 23:45:27,453 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-10-09 23:45:27,636 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:45:27,637 [ scc.git] DEBUG Calling 'git submodule update' 2026-10-09 23:45:27,759 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:45:27,759 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:45:27,772 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-09 23:45:27,881 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-10-09 23:45:27,935 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f4f067feed0> has no local changes 2026-10-09 23:45:27,935 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-virtual-microscope Updating deab817..160d894 Previously merged: - PR 20 jburel 'Build' Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#106 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/106/)' 2026-10-09 23:45:28,111 [ scc.git] DEBUG [detached HEAD 9d9a0a9] merge master -Dorg -Ssuccess-only 2026-10-09 23:45:28,113 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:45:28,113 [ scc.git] INFO Overriding base-branch from master to main 2026-10-09 23:45:28,113 [ scc.repo] DEBUG ## PRs found: 2026-10-09 23:45:28,439 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None 2026-10-09 23:45:28,966 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None 2026-10-09 23:45:29,460 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21/comments HTTP/1.1" 200 None 2026-10-09 23:45:30,084 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc?page=1 HTTP/1.1" 200 None 2026-10-09 23:45:30,659 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-09 23:45:31,201 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-10-09 23:45:31,730 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc?page=1 HTTP/1.1" 200 None 2026-10-09 23:45:32,198 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/d07067753650282c9e8cdbbeae37897b7ed0d4cc?per_page=1 HTTP/1.1" 200 2 2026-10-09 23:45:32,199 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import' 2026-10-09 23:45:32,684 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None 2026-10-09 23:45:33,195 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None 2026-10-09 23:45:33,703 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None 2026-10-09 23:45:34,240 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8?page=1 HTTP/1.1" 200 None 2026-10-09 23:45:34,705 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-09 23:45:35,198 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8?page=1 HTTP/1.1" 200 None 2026-10-09 23:45:35,692 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2 2026-10-09 23:45:35,693 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' 2026-10-09 23:45:35,693 [ scc.repo] DEBUG ## Branches found: 2026-10-09 23:45:35,693 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr 2026-10-09 23:45:35,694 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:45:35,694 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:45:35,716 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main' 2026-10-09 23:45:35,739 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-10-09 23:45:35,739 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main' 2026-10-09 23:45:35,766 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main' 2026-10-09 23:45:35,928 [ scc.git] DEBUG Updating 8f3c313..4e1e685 2026-10-09 23:45:36,680 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/23 HTTP/1.1" 200 None 2026-10-09 23:45:37,525 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/20 HTTP/1.1" 200 None 2026-10-09 23:45:37,526 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head' 2026-10-09 23:45:38,158 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr 2026-10-09 23:45:38,158 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD 2026-10-09 23:45:38,186 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head' 2026-10-09 23:45:38,915 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr 2026-10-09 23:45:38,916 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD 2026-10-09 23:45:38,948 [ scc.git] DEBUG ## Unique users: [] 2026-10-09 23:45:38,948 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:45:38,948 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:45:38,964 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8' 2026-10-09 23:45:39,009 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:45:39,023 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8' 2026-10-09 23:45:39,224 [ scc.git] DEBUG Auto-merging README.rst 2026-10-09 23:45:39,224 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py 2026-10-09 23:45:39,224 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py 2026-10-09 23:45:39,224 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py 2026-10-09 23:45:39,249 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-10-09 23:45:39,250 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-10-09 23:45:39,285 [ scc.git] DEBUG Calling 'git reset --hard 4e1e685dff22136abfd2626f6fd6eaf985aba368' 2026-10-09 23:45:39,437 [ scc.git] DEBUG HEAD is now at 4e1e685 Merge pull request #23 from lubianat/patch-1 2026-10-09 23:45:39,625 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:45:39,626 [ scc.git] DEBUG Calling 'git merge-base 4e1e685dff22136abfd2626f6fd6eaf985aba368 85cf4c893f393da6763bf4cee2a308832a41a9e8' 2026-10-09 23:45:39,674 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..4e1e685dff22136abfd2626f6fd6eaf985aba368' 2026-10-09 23:45:39,700 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' Conflicting PR. Removed from build [OMERO-plugins-push#106](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/106/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/106/consoleText) for more details. Possible conflicts: - Upstream changes - omero_web_zarr/urls.py --conflicts 2026-10-09 23:45:39,714 [ scc.config] DEBUG Found github.token 2026-10-09 23:45:39,714 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts. 2026-10-09 23:45:39,714 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d07067753650282c9e8cdbbeae37897b7ed0d4cc' 2026-10-09 23:45:39,764 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:45:39,778 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) d07067753650282c9e8cdbbeae37897b7ed0d4cc' 2026-10-09 23:45:40,010 [ scc.git] DEBUG Auto-merging README.rst 2026-10-09 23:45:40,010 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py 2026-10-09 23:45:40,121 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-09 23:45:40,249 [ scc.git] DEBUG README.rst | 3 + 2026-10-09 23:45:40,249 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++ 2026-10-09 23:45:40,249 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 + 2026-10-09 23:45:40,249 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++- 2026-10-09 23:45:40,249 [ scc.git] DEBUG setup.py | 5 +- 2026-10-09 23:45:40,249 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-) 2026-10-09 23:45:40,249 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html 2026-10-09 23:45:40,427 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:45:40,427 [ scc.git] DEBUG Calling 'git submodule update' 2026-10-09 23:45:40,594 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:45:40,594 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:45:40,628 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-09 23:45:40,774 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-10-09 23:45:40,846 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f4f0675b310> has no local changes 2026-10-09 23:45:40,847 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-web-zarr Excluded PRs: - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft) Updating 8f3c313..4e1e685 Previously merged: - PR 23 lubianat 'Fix mix of .rst and .md on README' - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints' Merged PRs: - PR 21 will-moore 'Web zarr import' Conflicting PRs (not included): - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' Generated by OMERO-plugins-push#106 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/106/)' 2026-10-09 23:45:41,012 [ scc.git] DEBUG [detached HEAD ebcc915] merge master -Dorg -Ssuccess-only 2026-10-09 23:45:41,015 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:45:41,015 [ scc.repo] DEBUG ## PRs found: 2026-10-09 23:45:41,317 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 None 2026-10-09 23:45:41,830 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/issues/25 HTTP/1.1" 200 None 2026-10-09 23:45:41,831 [ scc.repo] DEBUG # ... Include label: dependencies 2026-10-09 23:45:42,470 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9?page=1 HTTP/1.1" 200 None 2026-10-09 23:45:43,084 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-09 23:45:43,673 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-10-09 23:45:44,167 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9?page=1 HTTP/1.1" 200 None 2026-10-09 23:45:44,634 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/statuses/c73bedb717b9ecce0af666245d3486aa5a2dafe9?per_page=1 HTTP/1.1" 200 2 2026-10-09 23:45:44,634 [ scc.repo] DEBUG - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-10-09 23:45:44,634 [ scc.repo] DEBUG ## Branches found: 2026-10-09 23:45:44,634 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror 2026-10-09 23:45:44,635 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:45:44,635 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:45:44,655 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-10-09 23:45:44,678 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-10-09 23:45:44,678 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-10-09 23:45:44,706 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-10-09 23:45:44,773 [ scc.git] DEBUG Already up to date. 2026-10-09 23:45:44,773 [ scc.git] DEBUG Calling 'git fetch origin pull/25/head' 2026-10-09 23:45:45,201 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-weberror 2026-10-09 23:45:45,201 [ scc.git] DEBUG * branch refs/pull/25/head -> FETCH_HEAD 2026-10-09 23:45:45,228 [ scc.git] DEBUG ## Unique users: [] 2026-10-09 23:45:45,228 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:45:45,228 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:45:45,244 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c73bedb717b9ecce0af666245d3486aa5a2dafe9' 2026-10-09 23:45:45,269 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:45:45,283 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) c73bedb717b9ecce0af666245d3486aa5a2dafe9' 2026-10-09 23:45:45,474 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-09 23:45:45,541 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-10-09 23:45:45,542 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-10-09 23:45:45,728 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:45:45,729 [ scc.git] DEBUG Calling 'git submodule update' 2026-10-09 23:45:45,871 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:45:45,871 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:45:45,888 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-09 23:45:46,007 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-10-09 23:45:46,100 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f4f067a3150> has no local changes 2026-10-09 23:45:46,100 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: openmicroscopy/omero-weberror Already up to date. Merged PRs: - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#106 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/106/)' 2026-10-09 23:45:46,261 [ scc.git] DEBUG [detached HEAD 40386b1] merge master -Dorg -Ssuccess-only 2026-10-09 23:45:46,263 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:45:46,263 [ scc.repo] DEBUG ## PRs found: 2026-10-09 23:45:46,569 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 None 2026-10-09 23:45:47,101 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/issues/37 HTTP/1.1" 200 None 2026-10-09 23:45:47,102 [ scc.repo] DEBUG # ... Include label: dependencies 2026-10-09 23:45:47,727 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478?page=1 HTTP/1.1" 200 None 2026-10-09 23:45:48,375 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-09 23:45:48,934 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-10-09 23:45:49,463 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478?page=1 HTTP/1.1" 200 None 2026-10-09 23:45:49,925 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/statuses/8cf5f7e65ae8e945b134e41e77bc13a785aff478?per_page=1 HTTP/1.1" 200 2 2026-10-09 23:45:49,926 [ scc.repo] DEBUG - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-10-09 23:45:49,926 [ scc.repo] DEBUG ## Branches found: 2026-10-09 23:45:49,926 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest 2026-10-09 23:45:49,927 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:45:49,927 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:45:49,946 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-10-09 23:45:49,968 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-10-09 23:45:49,968 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-10-09 23:45:49,995 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-10-09 23:45:50,060 [ scc.git] DEBUG Already up to date. 2026-10-09 23:45:50,061 [ scc.git] DEBUG Calling 'git fetch origin pull/37/head' 2026-10-09 23:45:50,484 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-webtest 2026-10-09 23:45:50,484 [ scc.git] DEBUG * branch refs/pull/37/head -> FETCH_HEAD 2026-10-09 23:45:50,507 [ scc.git] DEBUG ## Unique users: [] 2026-10-09 23:45:50,507 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:45:50,507 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:45:50,525 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8cf5f7e65ae8e945b134e41e77bc13a785aff478' 2026-10-09 23:45:50,548 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:45:50,560 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 37 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8cf5f7e65ae8e945b134e41e77bc13a785aff478' 2026-10-09 23:45:50,788 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-09 23:45:50,864 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-10-09 23:45:50,864 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-10-09 23:45:51,069 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:45:51,069 [ scc.git] DEBUG Calling 'git submodule update' 2026-10-09 23:45:51,194 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:45:51,194 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:45:51,208 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-09 23:45:51,322 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-10-09 23:45:51,392 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f4f045b8410> has no local changes 2026-10-09 23:45:51,392 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: openmicroscopy/omero-webtest Already up to date. Merged PRs: - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#106 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/106/)' 2026-10-09 23:45:51,575 [ scc.git] DEBUG [detached HEAD ada03bf] merge master -Dorg -Ssuccess-only 2026-10-09 23:45:51,578 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:45:51,578 [ scc.repo] DEBUG ## PRs found: 2026-10-09 23:45:51,839 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 2 2026-10-09 23:45:51,840 [ scc.repo] DEBUG ## Branches found: 2026-10-09 23:45:51,840 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway 2026-10-09 23:45:51,841 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:45:51,841 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:45:51,862 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-10-09 23:45:51,883 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-10-09 23:45:51,883 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-10-09 23:45:51,907 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-10-09 23:45:51,962 [ scc.git] DEBUG Already up to date. 2026-10-09 23:45:51,962 [ scc.git] DEBUG ## Unique users: [] 2026-10-09 23:45:51,962 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:45:51,962 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:45:51,977 [ scc.git] DEBUG Calling 'git submodule update' 2026-10-09 23:45:52,105 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:45:52,105 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:45:52,119 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-09 23:45:52,234 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-10-09 23:45:52,345 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f4f067b0e10> has no local changes 2026-10-09 23:45:52,345 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/rOMERO-gateway Already up to date. Generated by OMERO-plugins-push#106 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/106/)' 2026-10-09 23:45:52,497 [ scc.git] DEBUG [detached HEAD 5b5d5c7] merge master -Dorg -Ssuccess-only 2026-10-09 23:45:52,499 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:45:52,499 [ scc.git] INFO Overriding base-branch from master to develop 2026-10-09 23:45:52,499 [ scc.repo] DEBUG ## PRs found: 2026-10-09 23:45:52,829 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None 2026-10-09 23:45:53,330 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/235 HTTP/1.1" 200 None 2026-10-09 23:45:53,808 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/235/comments HTTP/1.1" 200 None 2026-10-09 23:45:54,296 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/9f03fdbd8237f5cdbffeac0a45869ee4bd570327?page=1 HTTP/1.1" 200 None 2026-10-09 23:45:54,886 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/9f03fdbd8237f5cdbffeac0a45869ee4bd570327/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-09 23:45:55,441 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/9f03fdbd8237f5cdbffeac0a45869ee4bd570327/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-10-09 23:45:55,910 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/9f03fdbd8237f5cdbffeac0a45869ee4bd570327?page=1 HTTP/1.1" 200 None 2026-10-09 23:45:56,373 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/9f03fdbd8237f5cdbffeac0a45869ee4bd570327?per_page=1 HTTP/1.1" 200 2 2026-10-09 23:45:56,374 [ scc.repo] DEBUG - PR 235 will-moore 'Batch roi export tags' 2026-10-09 23:45:56,883 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/232 HTTP/1.1" 200 None 2026-10-09 23:45:57,380 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f?page=1 HTTP/1.1" 200 None 2026-10-09 23:45:57,913 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-10-09 23:45:58,392 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-10-09 23:45:58,881 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f?page=1 HTTP/1.1" 200 None 2026-10-09 23:45:59,353 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/e190baa635f40826befc84321719243092ee849f?per_page=1 HTTP/1.1" 200 2 2026-10-09 23:45:59,353 [ scc.repo] DEBUG - PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`' 2026-10-09 23:45:59,353 [ scc.repo] DEBUG ## Branches found: 2026-10-09 23:45:59,353 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts 2026-10-09 23:45:59,354 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:45:59,354 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:45:59,375 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop' 2026-10-09 23:45:59,396 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-10-09 23:45:59,396 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop' 2026-10-09 23:45:59,632 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop' 2026-10-09 23:45:59,947 [ scc.git] DEBUG Updating 4b4c755..5b4d768 2026-10-09 23:46:00,492 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/231 HTTP/1.1" 200 None 2026-10-09 23:46:01,264 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/229 HTTP/1.1" 200 None 2026-10-09 23:46:01,978 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/223 HTTP/1.1" 200 None 2026-10-09 23:46:02,781 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/230 HTTP/1.1" 200 None 2026-10-09 23:46:03,532 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/228 HTTP/1.1" 200 None 2026-10-09 23:46:04,329 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None 2026-10-09 23:46:05,135 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None 2026-10-09 23:46:05,136 [ scc.git] DEBUG Calling 'git fetch origin pull/232/head' 2026-10-09 23:46:05,641 [ scc.git] DEBUG From https://github.com/ome/scripts 2026-10-09 23:46:05,641 [ scc.git] DEBUG * branch refs/pull/232/head -> FETCH_HEAD 2026-10-09 23:46:05,676 [ scc.git] DEBUG Calling 'git fetch origin pull/235/head' 2026-10-09 23:46:06,929 [ scc.git] DEBUG From https://github.com/ome/scripts 2026-10-09 23:46:06,929 [ scc.git] DEBUG * branch refs/pull/235/head -> FETCH_HEAD 2026-10-09 23:46:06,952 [ scc.git] DEBUG ## Unique users: [] 2026-10-09 23:46:06,952 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:46:06,952 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:46:06,967 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...e190baa635f40826befc84321719243092ee849f' 2026-10-09 23:46:07,007 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:46:07,022 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 232 (Add Auto header detection to `Populate_Metadata.py`) e190baa635f40826befc84321719243092ee849f' 2026-10-09 23:46:07,278 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-09 23:46:07,355 [ scc.git] DEBUG omero/import_scripts/Populate_Metadata.py | 26 ++++++++++++++++++++++++-- 2026-10-09 23:46:07,355 [ scc.git] DEBUG 1 file changed, 24 insertions(+), 2 deletions(-) 2026-10-09 23:46:07,557 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:46:07,557 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...9f03fdbd8237f5cdbffeac0a45869ee4bd570327' 2026-10-09 23:46:07,619 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:46:07,635 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 235 (Batch roi export tags) 9f03fdbd8237f5cdbffeac0a45869ee4bd570327' 2026-10-09 23:46:07,928 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-10-09 23:46:08,038 [ scc.git] DEBUG omero/export_scripts/Batch_ROI_Export.py | 48 +++++++++++++++++++++----------- 2026-10-09 23:46:08,038 [ scc.git] DEBUG test/integration/test_export_scripts.py | 11 ++++++-- 2026-10-09 23:46:08,038 [ scc.git] DEBUG 2 files changed, 40 insertions(+), 19 deletions(-) 2026-10-09 23:46:08,215 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:46:08,216 [ scc.git] DEBUG Calling 'git submodule update' 2026-10-09 23:46:08,363 [ scc.git] DEBUG Get sha1 of %s 2026-10-09 23:46:08,363 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-10-09 23:46:08,382 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-09 23:46:08,504 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-10-09 23:46:08,594 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f4f07868050> has no local changes 2026-10-09 23:46:08,595 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/scripts Updating 4b4c755..5b4d768 Previously merged: - PR 231 jburel 'Create Release ' - PR 229 Rdornier 'Adding support for custom user label' - PR 223 will-moore 'don't attempt ROI stats on big images' - PR 230 Rdornier 'Import from csv fix' - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows' - PR 227 jburel 'Replace tostring by tobytes' - PR 225 will-moore 'Fix param names and assertion texts in tests' Merged PRs: - PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`' - PR 235 will-moore 'Batch roi export tags' Generated by OMERO-plugins-push#106 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/106/)' 2026-10-09 23:46:08,760 [ scc.git] DEBUG [detached HEAD 4ed2002] merge master -Dorg -Ssuccess-only 2026-10-09 23:46:08,763 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:46:08,763 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-10-09 23:46:09,033 [ scc.config] DEBUG Found submodule.figure.url 2026-10-09 23:46:09,223 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:46:09,263 [ scc.config] DEBUG Found submodule.minimal-omero-client.url 2026-10-09 23:46:09,665 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:46:09,732 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch 2026-10-09 23:46:09,740 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url 2026-10-09 23:46:10,102 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:46:10,128 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch 2026-10-09 23:46:10,141 [ scc.config] DEBUG Found submodule.omero-cli-render.url 2026-10-09 23:46:10,544 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:46:10,580 [ scc.config] DEBUG Found submodule.omero-cli-render.branch 2026-10-09 23:46:10,587 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url 2026-10-09 23:46:10,979 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:46:11,047 [ scc.config] DEBUG Found submodule.omero-figure.url 2026-10-09 23:46:11,402 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:46:11,434 [ scc.config] DEBUG Found submodule.omero-figure.branch 2026-10-09 23:46:11,442 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url 2026-10-09 23:46:11,828 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:46:11,858 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch 2026-10-09 23:46:11,866 [ scc.config] DEBUG Found submodule.omero-gallery.url 2026-10-09 23:46:12,252 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:46:12,288 [ scc.config] DEBUG Found submodule.omero-gallery.branch 2026-10-09 23:46:12,298 [ scc.config] DEBUG Found submodule.omero-iviewer.url 2026-10-09 23:46:12,702 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:46:12,734 [ scc.config] DEBUG Found submodule.omero-iviewer.branch 2026-10-09 23:46:12,742 [ scc.config] DEBUG Found submodule.omero-mapr.url 2026-10-09 23:46:13,139 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:46:13,172 [ scc.config] DEBUG Found submodule.omero-mapr.branch 2026-10-09 23:46:13,180 [ scc.config] DEBUG Found submodule.omero-metadata.url 2026-10-09 23:46:13,576 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:46:13,608 [ scc.config] DEBUG Found submodule.omero-metadata.branch 2026-10-09 23:46:13,616 [ scc.config] DEBUG Found submodule.omero-parade.url 2026-10-09 23:46:14,001 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:46:14,035 [ scc.config] DEBUG Found submodule.omero-parade.branch 2026-10-09 23:46:14,044 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url 2026-10-09 23:46:14,428 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:46:14,461 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch 2026-10-09 23:46:14,470 [ scc.config] DEBUG Found submodule.omero-rois.url 2026-10-09 23:46:14,866 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:46:14,906 [ scc.config] DEBUG Found submodule.omero-signup.url 2026-10-09 23:46:15,305 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:46:15,340 [ scc.config] DEBUG Found submodule.omero-test-infra.url 2026-10-09 23:46:15,745 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:46:15,779 [ scc.config] DEBUG Found submodule.omero-test-infra.branch 2026-10-09 23:46:15,788 [ scc.config] DEBUG Found submodule.omero-upload.url 2026-10-09 23:46:16,181 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:46:16,218 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url 2026-10-09 23:46:16,615 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:46:16,653 [ scc.config] DEBUG Found submodule.omero-web-zarr.url 2026-10-09 23:46:17,048 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:46:17,086 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch 2026-10-09 23:46:17,096 [ scc.config] DEBUG Found submodule.omero-weberror.url 2026-10-09 23:46:17,484 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:46:17,515 [ scc.config] DEBUG Found submodule.omero-weberror.branch 2026-10-09 23:46:17,525 [ scc.config] DEBUG Found submodule.omero-webtest.url 2026-10-09 23:46:17,927 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:46:17,961 [ scc.config] DEBUG Found submodule.omero-webtest.branch 2026-10-09 23:46:17,970 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url 2026-10-09 23:46:18,370 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:46:18,402 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch 2026-10-09 23:46:18,410 [ scc.config] DEBUG Found submodule.scripts.url 2026-10-09 23:46:18,808 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-10-09 23:46:18,841 [ scc.config] DEBUG Found submodule.scripts.branch 2026-10-09 23:46:18,841 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-10-09 23:46:21,621 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f4f09906e10> has local changes 2026-10-09 23:46:21,621 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-plugins Already up to date. Merged PRs: - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' Repository: ome/figure Excluded PRs: - PR 9 will-moore 'Save omezarr collection' (stage: draft) Updating 3935875..e92b4e8 Previously merged: - PR 20 will-moore 'Hide export dropdown unless omero' - PR 19 Rdornier 'Fix rectangle crop' - PR 14 will-moore 'App served by omero env' - PR 17 Rdornier 'Do not crop rotated panel at export' - PR 15 will-moore 'Replace navbar 'OMERO' with 'figure' and OME logo' Merged PRs: - PR 5 will-moore 'Add sample_figures/ngff_images_figure.json' - PR 12 will-moore 'Browser based export' - PR 21 tcompa 'Avoid request to `WEBGATEWAYINDEX + "open_with/` if `APP_SERVED_BY_OMERO = false`' Repository: ome/minimal-omero-client Already up to date. Repository: ome/omero-cli-duplicate Excluded PRs: - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment) Already up to date. Merged PRs: - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-cli-render Excluded PRs: - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft) Updating ce6e13c..68b7303 Previously merged: - PR 74 jburel 'Replace manual changelog by automated GH release step' - PR 75 jburel 'Sort the new channels to ensure settings are set' - PR 71 dominikl 'Escape slash character in image names' - PR 69 dominikl 'Fix help text for impo/export commands' Merged PRs: - PR 59 will-moore 'Apply settings to Plate' Repository: ome/omero-cli-zarr Excluded PRs: - PR 166 will-moore 'Downsample scale option' (stage: draft) - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment) Updating 11d3587..d5f88d8 Previously merged: - PR 193 dominikl 'Only parse import uris if stated' - PR 182 will-moore 'Revert "Remove support for Plate import"' - PR 194 will-moore 'Update uk1s3.embassy links to livingobjects' - PR 197 pwalczysko 'Fix pragma' - PR 196 will-moore 'Storage options only if needed' - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' - PR 192 jburel 'Set Omero pixel size' - PR 186 jburel 'Create release from tag' - PR 187 dominikl 'Fix target-by-name option' - PR 180 will-moore 'Import command' - PR 179 will-moore 'Changelog 0.6.0' - PR 177 jburel 'Replace fromstring by frombuffer' - PR 175 will-moore 'Pin ome-zarr-py <0.12.0' - PR 147 will-moore 'Name option' - PR 173 will-moore 'Add test_export_plate_polygons()' - PR 171 will-moore 'Initial addition of integration tests' - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Conflicting PRs (not included): - PR 174 will-moore 'Skip wells' - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' Repository: ome/omero-figure Updating 9cc36cde..3195c3df Previously merged: - PR 704 jburel 'Revert commit 49ae9c9' - PR 703 will-moore 'Readme remove rc' - PR 700 will-moore 'Fix parentheses in zoom level for loop for export script' - PR 692 will-moore 'colorbar lut background fix' - PR 701 will-moore 'bump nanoid to 3.3.18 with 'npm audit fix'' - PR 698 dependabot[bot] 'Bump dompurify from 3.4.9 to 3.4.13' - PR 697 dependabot[bot] 'Bump postcss from 8.5.15 to 8.5.25' - PR 695 dependabot[bot] 'Bump immutable from 5.1.6 to 5.1.9' - PR 693 dependabot[bot] 'Bump dompurify from 3.4.0 to 3.4.9' - PR 691 dependabot[bot] 'Bump esbuild and vite' - PR 686 will-moore 'Add note about zarr etc requirement for export script with zarr images' - PR 690 dependabot[bot] 'Bump postcss from 8.5.3 to 8.5.15' - PR 681 dependabot[bot] 'Bump dompurify from 3.3.2 to 3.4.0' - PR 688 will-moore 'app handles ?image=1 without needing /new?image=1' - PR 685 will-moore 'Fix static files links for release build' - PR 683 will-moore 'Add touch support for clicking on single panel' - PR 680 will-moore 'Use --pre install for export script in README' - PR 684 will-moore 'Fix PKG_VERSION fix in publish_pypi.yml' - PR 682 will-moore 'Enable pre-release rc workflow with bumpversion and publish to pypi' - PR 679 will-moore 'Remove commit from gist demoUrl to load latest, with livingobjects URLs' - PR 677 dependabot[bot] 'Bump vite from 6.4.1 to 6.4.2' - PR 666 will-moore 'Standalone app' - PR 676 dependabot[bot] 'Bump picomatch' - PR 669 will-moore 'Standalone python script' - PR 662 will-moore 'Export script handles OME-zarr images' - PR 663 will-moore 'Zarr' - PR 674 dependabot[bot] 'Bump immutable from 4.1.0 to 4.3.8' - PR 675 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.2' - PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8' - PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues' - PR 667 Tom-TBT 'Label suggestion interface' - PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID' - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO' - PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0' - PR 664 Nirkan 'Handle many channels ' - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes' - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540' - PR 661 Rdornier 'Align to grid - check if panels are already in the grid' - PR 649 jburel 'Replace manual changelog by automated GH release step' - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout' - PR 637 Rdornier 'Fix scalebar position' - PR 600 Rdornier 'Label on rois' - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles' - PR 651 Rdornier 'More compliant align to grid' - PR 650 jburel 'Bump Python version' - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…' - PR 610 will-moore 'Add docs/contributing.rst' - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1' - PR 646 JensWendt 'fix word wrap of image names' - PR 612 will-moore 'Script version' - PR 630 will-moore 'Fix color and position for ALL new panel insets' - PR 616 Rdornier 'Fix labels around border' - PR 605 Tom-TBT 'Colorbar feature' - PR 638 Rdornier 'Fix arrow opacity' - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4' - PR 635 dependabot[bot] 'Bump esbuild and vite' - PR 623 will-moore 'Fix wrapping of label X button. see issues/622' - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 706 will-moore 'Figure repo migration' Conflicting PRs (not included): - PR 710 dependabot[bot] 'Bump dompurify from 3.4.13 to 3.4.16' Repository: ome/omero-fpbioimage Already up to date. Merged PRs: - PR 18 jburel 'default size z value' - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-gallery Already up to date. Merged PRs: - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - PR 114 dependabot[bot] 'Bump tar and fsevents' - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' Conflicting PRs (not included): - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' Repository: ome/omero-iviewer Excluded PRs: - PR 420 will-moore 'Add release process to README' (exclude comment) - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment) Updating 7a798cee..0a836211 Previously merged: - PR 574 dependabot[bot] 'Bump minimatch from 3.1.2 to 3.1.5' - PR 573 dependabot[bot] 'Bump serialize-javascript and mocha' - PR 572 dependabot[bot] 'Bump brace-expansion from 1.1.13 to 1.1.21' - PR 571 dependabot[bot] 'Bump fast-uri from 3.1.7 to 3.1.8' - PR 570 dependabot[bot] 'Bump engine.io from 6.6.9 to 6.6.11' - PR 568 dependabot[bot] 'Bump webpack-dev-middleware from 8.1.0 to 8.3.0' - PR 566 dependabot[bot] 'Bump js-yaml from 4.1.0 to 4.3.2' - PR 565 dependabot[bot] 'Bump qs and body-parser' - PR 564 dependabot[bot] 'Bump fast-uri from 3.1.5 to 3.1.7' - PR 567 will-moore 'Basic fix of prev/next shapes when shapes sorted' - PR 562 will-moore 'Keyboard select roi' - PR 563 will-moore 'Use POST data for imgRdef save' - PR 559 dependabot[bot] 'Bump js-yaml and mocha' - PR 558 dependabot[bot] 'Bump fast-uri from 3.1.4 to 3.1.5' - PR 557 dependabot[bot] 'Bump socket.io-parser from 4.2.6 to 4.2.7' - PR 541 will-moore 'Only add channel to tile request string if active' - PR 556 dependabot[bot] 'Bump webpack-dev-server from 5.2.6 to 6.0.0' - PR 554 dependabot[bot] 'Bump http-proxy-middleware from 2.0.9 to 2.0.10' - PR 553 dependabot[bot] 'Bump postcss from 8.5.10 to 8.5.25' - PR 552 dependabot[bot] 'Bump tmp from 0.2.6 to 0.2.7' - PR 551 dependabot[bot] 'Bump body-parser from 1.20.5 to 1.20.6' - PR 550 dependabot[bot] 'Bump webpack-dev-server from 5.2.4 to 5.2.6' - PR 549 dependabot[bot] 'Bump shell-quote from 1.8.4 to 1.10.0' - PR 548 dependabot[bot] 'Bump fast-uri from 3.1.2 to 3.1.4' - PR 547 dependabot[bot] 'Bump websocket-driver from 0.7.4 to 0.7.5' - PR 540 dependabot[bot] 'Bump @babel/core from 7.5.4 to 7.29.6' - PR 539 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter' - PR 537 dependabot[bot] 'Bump launch-editor from 2.13.2 to 2.14.1' - PR 535 dependabot[bot] 'Bump tmp and eslint' - PR 527 PollenGeo 'Add grid overlay feature with configurable cell size and labels' - PR 534 will-moore 'Fix settings.md link to master branch. Move iviewer redirect settings' - PR 533 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter' - PR 530 dependabot[bot] 'Bump webpack-dev-server from 4.13.2 to 5.2.4' - PR 528 dependabot[bot] 'Bump fast-uri from 3.1.0 to 3.1.2' - PR 529 will-moore 'Image id and roi id initial params' - PR 526 will-moore 'Add keyboard handling for Left, Right, Up, Down Arrows to pan' - PR 525 dependabot[bot] 'Bump postcss from 8.4.31 to 8.5.10' - PR 524 dependabot[bot] 'Bump protocol-buffers-schema from 3.3.2 to 3.6.1' - PR 523 dependabot[bot] 'Bump follow-redirects from 1.15.6 to 1.16.0' - PR 522 dependabot[bot] 'Bump lodash from 4.17.21 to 4.18.1' - PR 521 dependabot[bot] 'Bump brace-expansion from 1.1.11 to 1.1.13' - PR 520 dependabot[bot] 'Bump node-forge from 1.3.1 to 1.4.0' - PR 519 dependabot[bot] 'Bump picomatch from 2.3.1 to 2.3.2' - PR 518 dependabot[bot] 'Bump ajv from 6.12.6 to 6.14.0' - PR 514 Tom-TBT 'Fix where interpolate_pixels server config is read from' - PR 513 jburel 'Bump Python version' - PR 512 jburel 'Replace manual changelog by automated GH release step' - PR 465 will-moore 'Save as Figure' - PR 517 will-moore 'Fix roi link permissions' - PR 516 dependabot[bot] 'Bump socket.io-parser from 4.2.4 to 4.2.6' - PR 510 joshmoore 'Re-enable omero-test-infra' - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 471 will-moore 'Z projection disabled tooltip' - PR 497 will-moore 'ROI Tags' Conflicting PRs (not included): - PR 532 will-moore 'Zarr layers' Repository: ome/omero-mapr Excluded PRs: - PR 79 will-moore 'Right panel title' (exclude comment) - PR 74 will-moore 'mapr extension of webclient' (exclude comment) Already up to date. Merged PRs: - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' - PR 97 JoshuaFortriede 'BUG Fix: use HTML value to replace HTML' - PR 98 JoshuaFortriede 'use namespace with keys' Conflicting PRs (not included): - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-metadata Updating 3cd120c..6a653e4 Previously merged: - PR 95 sbesson 'Remove manual CHANGELOG in favor of automated GitHub releases' - PR 94 sbesson 'Cap pandas to 2.x and clean up unused dependencies' - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 92 dominikl 'add resolve_rois to projectwrapper' Conflicting PRs (not included): - PR 64 will-moore 'Support images_by_name for Screen and Plate' Repository: ome/omero-parade Excluded PRs: - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft) - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment) - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment) - PR 39 chris-allan 'Expand all for Screens' (exclude comment) Already up to date. Merged PRs: - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Repository: ome/omero-prometheus-tools Already up to date. Merged PRs: - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-rois Excluded PRs: - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) Updating bdfeb5e..fc9ff96 Previously merged: - PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml' - PR 35 will-moore 'Add roi to array functions' Repository: ome/omero-signup Already up to date. Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Conflicting PRs (not included): - PR 14 manics 'Add pre-commit (black, flake8)' Repository: openmicroscopy/omero-test-infra Excluded PRs: - PR 75 marimeireles 'Microservices' (user: marimeireles) Updating cda3ec6..c8a0015 Previously merged: - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT' - PR 82 jburel 'Upgrade python' - PR 81 erickmartins 'add ulimits to omero-server container' Merged PRs: - PR 74 joshmoore 'Add 'ms' target for ./docker' Repository: ome/omero-upload Already up to date. Merged PRs: - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-virtual-microscope Updating deab817..160d894 Previously merged: - PR 20 jburel 'Build' Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-web-zarr Excluded PRs: - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft) Updating 8f3c313..4e1e685 Previously merged: - PR 23 lubianat 'Fix mix of .rst and .md on README' - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints' Merged PRs: - PR 21 will-moore 'Web zarr import' Conflicting PRs (not included): - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' Repository: openmicroscopy/omero-weberror Already up to date. Merged PRs: - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: openmicroscopy/omero-webtest Already up to date. Merged PRs: - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/rOMERO-gateway Already up to date. Repository: ome/scripts Updating 4b4c755..5b4d768 Previously merged: - PR 231 jburel 'Create Release ' - PR 229 Rdornier 'Adding support for custom user label' - PR 223 will-moore 'don't attempt ROI stats on big images' - PR 230 Rdornier 'Import from csv fix' - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows' - PR 227 jburel 'Replace tostring by tobytes' - PR 225 will-moore 'Fix param names and assertion texts in tests' Merged PRs: - PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`' - PR 235 will-moore 'Batch roi export tags' Generated by OMERO-plugins-push#106 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/106/)' 2026-10-09 23:46:22,221 [ scc.git] DEBUG [detached HEAD 4eed62b] merge master -Dorg -Ssuccess-only 2026-10-09 23:46:22,221 [ scc.git] DEBUG 24 files changed, 46 insertions(+), 46 deletions(-) 2026-10-09 23:46:22,223 [ scc.merge] INFO Repository: ome/omero-plugins 2026-10-09 23:46:22,223 [ scc.merge] INFO Already up to date. 2026-10-09 23:46:22,223 [ scc.merge] INFO 2026-10-09 23:46:22,223 [ scc.merge] INFO Merged PRs: 2026-10-09 23:46:22,223 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2026-10-09 23:46:22,223 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2026-10-09 23:46:22,223 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2026-10-09 23:46:22,223 [ scc.merge] INFO 2026-10-09 23:46:22,223 [ scc.merge] INFO Repository: ome/figure 2026-10-09 23:46:22,223 [ scc.merge] INFO Excluded PRs: 2026-10-09 23:46:22,223 [ scc.merge] INFO - PR 9 will-moore 'Save omezarr collection' (stage: draft) 2026-10-09 23:46:22,223 [ scc.merge] INFO Updating 3935875..e92b4e8 2026-10-09 23:46:22,223 [ scc.merge] INFO Previously merged: 2026-10-09 23:46:22,223 [ scc.merge] INFO - PR 20 will-moore 'Hide export dropdown unless omero' 2026-10-09 23:46:22,223 [ scc.merge] INFO - PR 19 Rdornier 'Fix rectangle crop' 2026-10-09 23:46:22,223 [ scc.merge] INFO - PR 14 will-moore 'App served by omero env' 2026-10-09 23:46:22,223 [ scc.merge] INFO - PR 17 Rdornier 'Do not crop rotated panel at export' 2026-10-09 23:46:22,223 [ scc.merge] INFO - PR 15 will-moore 'Replace navbar 'OMERO' with 'figure' and OME logo' 2026-10-09 23:46:22,223 [ scc.merge] INFO 2026-10-09 23:46:22,223 [ scc.merge] INFO Merged PRs: 2026-10-09 23:46:22,223 [ scc.merge] INFO - PR 5 will-moore 'Add sample_figures/ngff_images_figure.json' 2026-10-09 23:46:22,223 [ scc.merge] INFO - PR 12 will-moore 'Browser based export' 2026-10-09 23:46:22,223 [ scc.merge] INFO - PR 21 tcompa 'Avoid request to `WEBGATEWAYINDEX + "open_with/` if `APP_SERVED_BY_OMERO = false`' 2026-10-09 23:46:22,223 [ scc.merge] INFO 2026-10-09 23:46:22,223 [ scc.merge] INFO Repository: ome/minimal-omero-client 2026-10-09 23:46:22,223 [ scc.merge] INFO Already up to date. 2026-10-09 23:46:22,223 [ scc.merge] INFO 2026-10-09 23:46:22,223 [ scc.merge] INFO 2026-10-09 23:46:22,223 [ scc.merge] INFO Repository: ome/omero-cli-duplicate 2026-10-09 23:46:22,223 [ scc.merge] INFO Excluded PRs: 2026-10-09 23:46:22,223 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment) 2026-10-09 23:46:22,223 [ scc.merge] INFO Already up to date. 2026-10-09 23:46:22,223 [ scc.merge] INFO 2026-10-09 23:46:22,223 [ scc.merge] INFO Merged PRs: 2026-10-09 23:46:22,223 [ scc.merge] INFO - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-10-09 23:46:22,223 [ scc.merge] INFO 2026-10-09 23:46:22,223 [ scc.merge] INFO Repository: ome/omero-cli-render 2026-10-09 23:46:22,224 [ scc.merge] INFO Excluded PRs: 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft) 2026-10-09 23:46:22,224 [ scc.merge] INFO Updating ce6e13c..68b7303 2026-10-09 23:46:22,224 [ scc.merge] INFO Previously merged: 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 74 jburel 'Replace manual changelog by automated GH release step' 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 75 jburel 'Sort the new channels to ensure settings are set' 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names' 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands' 2026-10-09 23:46:22,224 [ scc.merge] INFO 2026-10-09 23:46:22,224 [ scc.merge] INFO Merged PRs: 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate' 2026-10-09 23:46:22,224 [ scc.merge] INFO 2026-10-09 23:46:22,224 [ scc.merge] INFO Repository: ome/omero-cli-zarr 2026-10-09 23:46:22,224 [ scc.merge] INFO Excluded PRs: 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft) 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment) 2026-10-09 23:46:22,224 [ scc.merge] INFO Updating 11d3587..d5f88d8 2026-10-09 23:46:22,224 [ scc.merge] INFO Previously merged: 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 193 dominikl 'Only parse import uris if stated' 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"' 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 194 will-moore 'Update uk1s3.embassy links to livingobjects' 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 197 pwalczysko 'Fix pragma' 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 196 will-moore 'Storage options only if needed' 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 192 jburel 'Set Omero pixel size' 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 186 jburel 'Create release from tag' 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 187 dominikl 'Fix target-by-name option' 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 180 will-moore 'Import command' 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0' 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer' 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0' 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 147 will-moore 'Name option' 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()' 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests' 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-10-09 23:46:22,224 [ scc.merge] INFO 2026-10-09 23:46:22,224 [ scc.merge] INFO Conflicting PRs (not included): 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 174 will-moore 'Skip wells' 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' 2026-10-09 23:46:22,224 [ scc.merge] INFO 2026-10-09 23:46:22,224 [ scc.merge] INFO Repository: ome/omero-figure 2026-10-09 23:46:22,224 [ scc.merge] INFO Updating 9cc36cde..3195c3df 2026-10-09 23:46:22,224 [ scc.merge] INFO Previously merged: 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 704 jburel 'Revert commit 49ae9c9' 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 703 will-moore 'Readme remove rc' 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 700 will-moore 'Fix parentheses in zoom level for loop for export script' 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 692 will-moore 'colorbar lut background fix' 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 701 will-moore 'bump nanoid to 3.3.18 with 'npm audit fix'' 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 698 dependabot[bot] 'Bump dompurify from 3.4.9 to 3.4.13' 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 697 dependabot[bot] 'Bump postcss from 8.5.15 to 8.5.25' 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 695 dependabot[bot] 'Bump immutable from 5.1.6 to 5.1.9' 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 693 dependabot[bot] 'Bump dompurify from 3.4.0 to 3.4.9' 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 691 dependabot[bot] 'Bump esbuild and vite' 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 686 will-moore 'Add note about zarr etc requirement for export script with zarr images' 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 690 dependabot[bot] 'Bump postcss from 8.5.3 to 8.5.15' 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 681 dependabot[bot] 'Bump dompurify from 3.3.2 to 3.4.0' 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 688 will-moore 'app handles ?image=1 without needing /new?image=1' 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 685 will-moore 'Fix static files links for release build' 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 683 will-moore 'Add touch support for clicking on single panel' 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 680 will-moore 'Use --pre install for export script in README' 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 684 will-moore 'Fix PKG_VERSION fix in publish_pypi.yml' 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 682 will-moore 'Enable pre-release rc workflow with bumpversion and publish to pypi' 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 679 will-moore 'Remove commit from gist demoUrl to load latest, with livingobjects URLs' 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 677 dependabot[bot] 'Bump vite from 6.4.1 to 6.4.2' 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 666 will-moore 'Standalone app' 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 676 dependabot[bot] 'Bump picomatch' 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 669 will-moore 'Standalone python script' 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 662 will-moore 'Export script handles OME-zarr images' 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 663 will-moore 'Zarr' 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 674 dependabot[bot] 'Bump immutable from 4.1.0 to 4.3.8' 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 675 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.2' 2026-10-09 23:46:22,224 [ scc.merge] INFO - PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8' 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues' 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 667 Tom-TBT 'Label suggestion interface' 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID' 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO' 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0' 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 664 Nirkan 'Handle many channels ' 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes' 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540' 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 661 Rdornier 'Align to grid - check if panels are already in the grid' 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 649 jburel 'Replace manual changelog by automated GH release step' 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout' 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position' 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois' 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles' 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 651 Rdornier 'More compliant align to grid' 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 650 jburel 'Bump Python version' 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…' 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst' 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1' 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 646 JensWendt 'fix word wrap of image names' 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 612 will-moore 'Script version' 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets' 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border' 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature' 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity' 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4' 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite' 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622' 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-10-09 23:46:22,225 [ scc.merge] INFO 2026-10-09 23:46:22,225 [ scc.merge] INFO Merged PRs: 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 706 will-moore 'Figure repo migration' 2026-10-09 23:46:22,225 [ scc.merge] INFO 2026-10-09 23:46:22,225 [ scc.merge] INFO Conflicting PRs (not included): 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 710 dependabot[bot] 'Bump dompurify from 3.4.13 to 3.4.16' 2026-10-09 23:46:22,225 [ scc.merge] INFO 2026-10-09 23:46:22,225 [ scc.merge] INFO Repository: ome/omero-fpbioimage 2026-10-09 23:46:22,225 [ scc.merge] INFO Already up to date. 2026-10-09 23:46:22,225 [ scc.merge] INFO 2026-10-09 23:46:22,225 [ scc.merge] INFO Merged PRs: 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 18 jburel 'default size z value' 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-10-09 23:46:22,225 [ scc.merge] INFO 2026-10-09 23:46:22,225 [ scc.merge] INFO Repository: ome/omero-gallery 2026-10-09 23:46:22,225 [ scc.merge] INFO Already up to date. 2026-10-09 23:46:22,225 [ scc.merge] INFO 2026-10-09 23:46:22,225 [ scc.merge] INFO Merged PRs: 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents' 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' 2026-10-09 23:46:22,225 [ scc.merge] INFO 2026-10-09 23:46:22,225 [ scc.merge] INFO Conflicting PRs (not included): 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' 2026-10-09 23:46:22,225 [ scc.merge] INFO 2026-10-09 23:46:22,225 [ scc.merge] INFO Repository: ome/omero-iviewer 2026-10-09 23:46:22,225 [ scc.merge] INFO Excluded PRs: 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment) 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment) 2026-10-09 23:46:22,225 [ scc.merge] INFO Updating 7a798cee..0a836211 2026-10-09 23:46:22,225 [ scc.merge] INFO Previously merged: 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 574 dependabot[bot] 'Bump minimatch from 3.1.2 to 3.1.5' 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 573 dependabot[bot] 'Bump serialize-javascript and mocha' 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 572 dependabot[bot] 'Bump brace-expansion from 1.1.13 to 1.1.21' 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 571 dependabot[bot] 'Bump fast-uri from 3.1.7 to 3.1.8' 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 570 dependabot[bot] 'Bump engine.io from 6.6.9 to 6.6.11' 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 568 dependabot[bot] 'Bump webpack-dev-middleware from 8.1.0 to 8.3.0' 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 566 dependabot[bot] 'Bump js-yaml from 4.1.0 to 4.3.2' 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 565 dependabot[bot] 'Bump qs and body-parser' 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 564 dependabot[bot] 'Bump fast-uri from 3.1.5 to 3.1.7' 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 567 will-moore 'Basic fix of prev/next shapes when shapes sorted' 2026-10-09 23:46:22,225 [ scc.merge] INFO - PR 562 will-moore 'Keyboard select roi' 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 563 will-moore 'Use POST data for imgRdef save' 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 559 dependabot[bot] 'Bump js-yaml and mocha' 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 558 dependabot[bot] 'Bump fast-uri from 3.1.4 to 3.1.5' 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 557 dependabot[bot] 'Bump socket.io-parser from 4.2.6 to 4.2.7' 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 541 will-moore 'Only add channel to tile request string if active' 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 556 dependabot[bot] 'Bump webpack-dev-server from 5.2.6 to 6.0.0' 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 554 dependabot[bot] 'Bump http-proxy-middleware from 2.0.9 to 2.0.10' 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 553 dependabot[bot] 'Bump postcss from 8.5.10 to 8.5.25' 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 552 dependabot[bot] 'Bump tmp from 0.2.6 to 0.2.7' 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 551 dependabot[bot] 'Bump body-parser from 1.20.5 to 1.20.6' 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 550 dependabot[bot] 'Bump webpack-dev-server from 5.2.4 to 5.2.6' 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 549 dependabot[bot] 'Bump shell-quote from 1.8.4 to 1.10.0' 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 548 dependabot[bot] 'Bump fast-uri from 3.1.2 to 3.1.4' 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 547 dependabot[bot] 'Bump websocket-driver from 0.7.4 to 0.7.5' 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 540 dependabot[bot] 'Bump @babel/core from 7.5.4 to 7.29.6' 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 539 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter' 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 537 dependabot[bot] 'Bump launch-editor from 2.13.2 to 2.14.1' 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 535 dependabot[bot] 'Bump tmp and eslint' 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 527 PollenGeo 'Add grid overlay feature with configurable cell size and labels' 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 534 will-moore 'Fix settings.md link to master branch. Move iviewer redirect settings' 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 533 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter' 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 530 dependabot[bot] 'Bump webpack-dev-server from 4.13.2 to 5.2.4' 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 528 dependabot[bot] 'Bump fast-uri from 3.1.0 to 3.1.2' 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 529 will-moore 'Image id and roi id initial params' 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 526 will-moore 'Add keyboard handling for Left, Right, Up, Down Arrows to pan' 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 525 dependabot[bot] 'Bump postcss from 8.4.31 to 8.5.10' 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 524 dependabot[bot] 'Bump protocol-buffers-schema from 3.3.2 to 3.6.1' 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 523 dependabot[bot] 'Bump follow-redirects from 1.15.6 to 1.16.0' 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 522 dependabot[bot] 'Bump lodash from 4.17.21 to 4.18.1' 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 521 dependabot[bot] 'Bump brace-expansion from 1.1.11 to 1.1.13' 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 520 dependabot[bot] 'Bump node-forge from 1.3.1 to 1.4.0' 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 519 dependabot[bot] 'Bump picomatch from 2.3.1 to 2.3.2' 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 518 dependabot[bot] 'Bump ajv from 6.12.6 to 6.14.0' 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 514 Tom-TBT 'Fix where interpolate_pixels server config is read from' 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 513 jburel 'Bump Python version' 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 512 jburel 'Replace manual changelog by automated GH release step' 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure' 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 517 will-moore 'Fix roi link permissions' 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 516 dependabot[bot] 'Bump socket.io-parser from 4.2.4 to 4.2.6' 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 510 joshmoore 'Re-enable omero-test-infra' 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-10-09 23:46:22,226 [ scc.merge] INFO 2026-10-09 23:46:22,226 [ scc.merge] INFO Merged PRs: 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip' 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 497 will-moore 'ROI Tags' 2026-10-09 23:46:22,226 [ scc.merge] INFO 2026-10-09 23:46:22,226 [ scc.merge] INFO Conflicting PRs (not included): 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 532 will-moore 'Zarr layers' 2026-10-09 23:46:22,226 [ scc.merge] INFO 2026-10-09 23:46:22,226 [ scc.merge] INFO Repository: ome/omero-mapr 2026-10-09 23:46:22,226 [ scc.merge] INFO Excluded PRs: 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment) 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient' (exclude comment) 2026-10-09 23:46:22,226 [ scc.merge] INFO Already up to date. 2026-10-09 23:46:22,226 [ scc.merge] INFO 2026-10-09 23:46:22,226 [ scc.merge] INFO Merged PRs: 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 97 JoshuaFortriede 'BUG Fix: use HTML value to replace HTML' 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 98 JoshuaFortriede 'use namespace with keys' 2026-10-09 23:46:22,226 [ scc.merge] INFO 2026-10-09 23:46:22,226 [ scc.merge] INFO Conflicting PRs (not included): 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-10-09 23:46:22,226 [ scc.merge] INFO 2026-10-09 23:46:22,226 [ scc.merge] INFO Repository: ome/omero-metadata 2026-10-09 23:46:22,226 [ scc.merge] INFO Updating 3cd120c..6a653e4 2026-10-09 23:46:22,226 [ scc.merge] INFO Previously merged: 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 95 sbesson 'Remove manual CHANGELOG in favor of automated GitHub releases' 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 94 sbesson 'Cap pandas to 2.x and clean up unused dependencies' 2026-10-09 23:46:22,226 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-10-09 23:46:22,226 [ scc.merge] INFO 2026-10-09 23:46:22,226 [ scc.merge] INFO Merged PRs: 2026-10-09 23:46:22,227 [ scc.merge] INFO - PR 92 dominikl 'add resolve_rois to projectwrapper' 2026-10-09 23:46:22,227 [ scc.merge] INFO 2026-10-09 23:46:22,227 [ scc.merge] INFO Conflicting PRs (not included): 2026-10-09 23:46:22,227 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate' 2026-10-09 23:46:22,227 [ scc.merge] INFO 2026-10-09 23:46:22,227 [ scc.merge] INFO Repository: ome/omero-parade 2026-10-09 23:46:22,227 [ scc.merge] INFO Excluded PRs: 2026-10-09 23:46:22,227 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft) 2026-10-09 23:46:22,227 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment) 2026-10-09 23:46:22,227 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment) 2026-10-09 23:46:22,227 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment) 2026-10-09 23:46:22,227 [ scc.merge] INFO Already up to date. 2026-10-09 23:46:22,227 [ scc.merge] INFO 2026-10-09 23:46:22,227 [ scc.merge] INFO Merged PRs: 2026-10-09 23:46:22,227 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' 2026-10-09 23:46:22,227 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' 2026-10-09 23:46:22,227 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-10-09 23:46:22,227 [ scc.merge] INFO 2026-10-09 23:46:22,227 [ scc.merge] INFO Repository: ome/omero-prometheus-tools 2026-10-09 23:46:22,227 [ scc.merge] INFO Already up to date. 2026-10-09 23:46:22,227 [ scc.merge] INFO 2026-10-09 23:46:22,227 [ scc.merge] INFO Merged PRs: 2026-10-09 23:46:22,227 [ scc.merge] INFO - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-10-09 23:46:22,227 [ scc.merge] INFO 2026-10-09 23:46:22,227 [ scc.merge] INFO Repository: ome/omero-rois 2026-10-09 23:46:22,227 [ scc.merge] INFO Excluded PRs: 2026-10-09 23:46:22,227 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) 2026-10-09 23:46:22,227 [ scc.merge] INFO Updating bdfeb5e..fc9ff96 2026-10-09 23:46:22,227 [ scc.merge] INFO Previously merged: 2026-10-09 23:46:22,227 [ scc.merge] INFO - PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml' 2026-10-09 23:46:22,227 [ scc.merge] INFO - PR 35 will-moore 'Add roi to array functions' 2026-10-09 23:46:22,227 [ scc.merge] INFO 2026-10-09 23:46:22,227 [ scc.merge] INFO 2026-10-09 23:46:22,227 [ scc.merge] INFO Repository: ome/omero-signup 2026-10-09 23:46:22,227 [ scc.merge] INFO Already up to date. 2026-10-09 23:46:22,227 [ scc.merge] INFO 2026-10-09 23:46:22,227 [ scc.merge] INFO Merged PRs: 2026-10-09 23:46:22,227 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-10-09 23:46:22,227 [ scc.merge] INFO 2026-10-09 23:46:22,227 [ scc.merge] INFO Conflicting PRs (not included): 2026-10-09 23:46:22,227 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)' 2026-10-09 23:46:22,227 [ scc.merge] INFO 2026-10-09 23:46:22,227 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra 2026-10-09 23:46:22,227 [ scc.merge] INFO Excluded PRs: 2026-10-09 23:46:22,227 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles) 2026-10-09 23:46:22,227 [ scc.merge] INFO Updating cda3ec6..c8a0015 2026-10-09 23:46:22,227 [ scc.merge] INFO Previously merged: 2026-10-09 23:46:22,227 [ scc.merge] INFO - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT' 2026-10-09 23:46:22,227 [ scc.merge] INFO - PR 82 jburel 'Upgrade python' 2026-10-09 23:46:22,227 [ scc.merge] INFO - PR 81 erickmartins 'add ulimits to omero-server container' 2026-10-09 23:46:22,227 [ scc.merge] INFO 2026-10-09 23:46:22,227 [ scc.merge] INFO Merged PRs: 2026-10-09 23:46:22,227 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' 2026-10-09 23:46:22,227 [ scc.merge] INFO 2026-10-09 23:46:22,227 [ scc.merge] INFO Repository: ome/omero-upload 2026-10-09 23:46:22,227 [ scc.merge] INFO Already up to date. 2026-10-09 23:46:22,227 [ scc.merge] INFO 2026-10-09 23:46:22,227 [ scc.merge] INFO Merged PRs: 2026-10-09 23:46:22,227 [ scc.merge] INFO - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-10-09 23:46:22,227 [ scc.merge] INFO 2026-10-09 23:46:22,227 [ scc.merge] INFO Repository: ome/omero-virtual-microscope 2026-10-09 23:46:22,227 [ scc.merge] INFO Updating deab817..160d894 2026-10-09 23:46:22,227 [ scc.merge] INFO Previously merged: 2026-10-09 23:46:22,227 [ scc.merge] INFO - PR 20 jburel 'Build' 2026-10-09 23:46:22,227 [ scc.merge] INFO 2026-10-09 23:46:22,227 [ scc.merge] INFO Merged PRs: 2026-10-09 23:46:22,227 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-10-09 23:46:22,227 [ scc.merge] INFO 2026-10-09 23:46:22,227 [ scc.merge] INFO Repository: ome/omero-web-zarr 2026-10-09 23:46:22,227 [ scc.merge] INFO Excluded PRs: 2026-10-09 23:46:22,227 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft) 2026-10-09 23:46:22,227 [ scc.merge] INFO Updating 8f3c313..4e1e685 2026-10-09 23:46:22,227 [ scc.merge] INFO Previously merged: 2026-10-09 23:46:22,227 [ scc.merge] INFO - PR 23 lubianat 'Fix mix of .rst and .md on README' 2026-10-09 23:46:22,227 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints' 2026-10-09 23:46:22,227 [ scc.merge] INFO 2026-10-09 23:46:22,227 [ scc.merge] INFO Merged PRs: 2026-10-09 23:46:22,228 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import' 2026-10-09 23:46:22,228 [ scc.merge] INFO 2026-10-09 23:46:22,228 [ scc.merge] INFO Conflicting PRs (not included): 2026-10-09 23:46:22,228 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' 2026-10-09 23:46:22,228 [ scc.merge] INFO 2026-10-09 23:46:22,228 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror 2026-10-09 23:46:22,228 [ scc.merge] INFO Already up to date. 2026-10-09 23:46:22,228 [ scc.merge] INFO 2026-10-09 23:46:22,228 [ scc.merge] INFO Merged PRs: 2026-10-09 23:46:22,228 [ scc.merge] INFO - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-10-09 23:46:22,228 [ scc.merge] INFO 2026-10-09 23:46:22,228 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest 2026-10-09 23:46:22,228 [ scc.merge] INFO Already up to date. 2026-10-09 23:46:22,228 [ scc.merge] INFO 2026-10-09 23:46:22,228 [ scc.merge] INFO Merged PRs: 2026-10-09 23:46:22,228 [ scc.merge] INFO - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-10-09 23:46:22,228 [ scc.merge] INFO 2026-10-09 23:46:22,228 [ scc.merge] INFO Repository: ome/rOMERO-gateway 2026-10-09 23:46:22,228 [ scc.merge] INFO Already up to date. 2026-10-09 23:46:22,228 [ scc.merge] INFO 2026-10-09 23:46:22,228 [ scc.merge] INFO 2026-10-09 23:46:22,228 [ scc.merge] INFO Repository: ome/scripts 2026-10-09 23:46:22,228 [ scc.merge] INFO Updating 4b4c755..5b4d768 2026-10-09 23:46:22,228 [ scc.merge] INFO Previously merged: 2026-10-09 23:46:22,228 [ scc.merge] INFO - PR 231 jburel 'Create Release ' 2026-10-09 23:46:22,228 [ scc.merge] INFO - PR 229 Rdornier 'Adding support for custom user label' 2026-10-09 23:46:22,228 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images' 2026-10-09 23:46:22,228 [ scc.merge] INFO - PR 230 Rdornier 'Import from csv fix' 2026-10-09 23:46:22,228 [ scc.merge] INFO - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows' 2026-10-09 23:46:22,228 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes' 2026-10-09 23:46:22,228 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests' 2026-10-09 23:46:22,228 [ scc.merge] INFO 2026-10-09 23:46:22,228 [ scc.merge] INFO Merged PRs: 2026-10-09 23:46:22,228 [ scc.merge] INFO - PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`' 2026-10-09 23:46:22,228 [ scc.merge] INFO - PR 235 will-moore 'Batch roi export tags' 2026-10-09 23:46:22,228 [ scc.merge] INFO 2026-10-09 23:46:22,228 [ scc.merge] DEBUG Cleaning remote branches created for merging 2026-10-09 23:46:22,228 [ scc.git] DEBUG Calling 'git remote' 2026-10-09 23:46:22,243 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/figure 2026-10-09 23:46:22,243 [ scc.git] DEBUG Calling 'git remote' 2026-10-09 23:46:22,276 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:46:22,276 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client 2026-10-09 23:46:22,276 [ scc.git] DEBUG Calling 'git remote' 2026-10-09 23:46:22,290 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:46:22,290 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate 2026-10-09 23:46:22,290 [ scc.git] DEBUG Calling 'git remote' 2026-10-09 23:46:22,303 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:46:22,303 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render 2026-10-09 23:46:22,304 [ scc.git] DEBUG Calling 'git remote' 2026-10-09 23:46:22,318 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:46:22,318 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr 2026-10-09 23:46:22,318 [ scc.git] DEBUG Calling 'git remote' 2026-10-09 23:46:22,332 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:46:22,332 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure 2026-10-09 23:46:22,333 [ scc.git] DEBUG Calling 'git remote' 2026-10-09 23:46:22,350 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:46:22,350 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage 2026-10-09 23:46:22,350 [ scc.git] DEBUG Calling 'git remote' 2026-10-09 23:46:22,367 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:46:22,367 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery 2026-10-09 23:46:22,367 [ scc.git] DEBUG Calling 'git remote' 2026-10-09 23:46:22,381 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:46:22,381 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer 2026-10-09 23:46:22,381 [ scc.git] DEBUG Calling 'git remote' 2026-10-09 23:46:22,404 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:46:22,404 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr 2026-10-09 23:46:22,404 [ scc.git] DEBUG Calling 'git remote' 2026-10-09 23:46:22,459 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:46:22,460 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata 2026-10-09 23:46:22,460 [ scc.git] DEBUG Calling 'git remote' 2026-10-09 23:46:22,503 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:46:22,503 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade 2026-10-09 23:46:22,503 [ scc.git] DEBUG Calling 'git remote' 2026-10-09 23:46:22,566 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:46:22,566 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools 2026-10-09 23:46:22,566 [ scc.git] DEBUG Calling 'git remote' 2026-10-09 23:46:22,595 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:46:22,595 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois 2026-10-09 23:46:22,595 [ scc.git] DEBUG Calling 'git remote' 2026-10-09 23:46:22,624 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:46:22,625 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup 2026-10-09 23:46:22,625 [ scc.git] DEBUG Calling 'git remote' 2026-10-09 23:46:22,666 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:46:22,666 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra 2026-10-09 23:46:22,666 [ scc.git] DEBUG Calling 'git remote' 2026-10-09 23:46:22,689 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:46:22,690 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload 2026-10-09 23:46:22,690 [ scc.git] DEBUG Calling 'git remote' 2026-10-09 23:46:22,714 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:46:22,714 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope 2026-10-09 23:46:22,714 [ scc.git] DEBUG Calling 'git remote' 2026-10-09 23:46:22,740 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:46:22,740 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr 2026-10-09 23:46:22,740 [ scc.git] DEBUG Calling 'git remote' 2026-10-09 23:46:22,778 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:46:22,778 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror 2026-10-09 23:46:22,778 [ scc.git] DEBUG Calling 'git remote' 2026-10-09 23:46:22,803 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:46:22,803 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest 2026-10-09 23:46:22,803 [ scc.git] DEBUG Calling 'git remote' 2026-10-09 23:46:22,837 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:46:22,837 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway 2026-10-09 23:46:22,837 [ scc.git] DEBUG Calling 'git remote' 2026-10-09 23:46:22,861 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-10-09 23:46:22,861 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts 2026-10-09 23:46:22,861 [ scc.git] DEBUG Calling 'git remote' 2026-10-09 23:46:22,896 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push Update component versions python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/figure/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/figure/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer. warnings.warn( WARNING: The wheel package is not available. WARNING: The wheel package is not available. /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer. warnings.warn( WARNING: The wheel package is not available. WARNING: The wheel package is not available. /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0' warnings.warn(tmpl.format(**locals())) /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0' warnings.warn(tmpl.format(**locals())) /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Updating omero-gateway from 5.10.0 to 5.11.1-SNAPSHOT grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Commit all component version changes Entering 'figure' Entering 'minimal-omero-client' Entering 'omero-cli-duplicate' Entering 'omero-cli-render' Entering 'omero-cli-zarr' Entering 'omero-figure' Entering 'omero-fpbioimage' Entering 'omero-gallery' Entering 'omero-iviewer' Entering 'omero-mapr' Entering 'omero-metadata' Entering 'omero-parade' Entering 'omero-prometheus-tools' Entering 'omero-rois' Entering 'omero-signup' Entering 'omero-test-infra' Entering 'omero-upload' Entering 'omero-virtual-microscope' Entering 'omero-web-zarr' Entering 'omero-weberror' Entering 'omero-webtest' Entering 'rOMERO-gateway' Entering 'scripts' Entering 'figure' HEAD detached from 3935875 nothing to commit, working tree clean Entering 'minimal-omero-client' [detached HEAD 80eb30e] Update component versions 1 file changed, 1 insertion(+), 1 deletion(-) Entering 'omero-cli-duplicate' HEAD detached from 4777ef8 nothing to commit, working tree clean Entering 'omero-cli-render' HEAD detached from ce6e13c nothing to commit, working tree clean Entering 'omero-cli-zarr' HEAD detached from 11d3587 Untracked files: (use "git add <file>..." to include in what will be committed) .eggs/ nothing added to commit but untracked files present (use "git add" to track) Entering 'omero-figure' HEAD detached from 9cc36cde nothing to commit, working tree clean Entering 'omero-fpbioimage' HEAD detached from 3b6c05a nothing to commit, working tree clean Entering 'omero-gallery' HEAD detached from 2a621da nothing to commit, working tree clean Entering 'omero-iviewer' HEAD detached from 7a798cee nothing to commit, working tree clean Entering 'omero-mapr' HEAD detached from 0a557da nothing to commit, working tree clean Entering 'omero-metadata' HEAD detached from 3cd120c nothing to commit, working tree clean Entering 'omero-parade' HEAD detached from fb5ae86 nothing to commit, working tree clean Entering 'omero-prometheus-tools' HEAD detached from eb47378 nothing to commit, working tree clean Entering 'omero-rois' HEAD detached from bdfeb5e nothing to commit, working tree clean Entering 'omero-signup' HEAD detached from be76813 nothing to commit, working tree clean Entering 'omero-test-infra' HEAD detached from cda3ec6 nothing to commit, working tree clean Entering 'omero-upload' HEAD detached from 100f6ae nothing to commit, working tree clean Entering 'omero-virtual-microscope' HEAD detached from deab817 nothing to commit, working tree clean Entering 'omero-web-zarr' HEAD detached from 8f3c313 nothing to commit, working tree clean Entering 'omero-weberror' HEAD detached from 70b01ed nothing to commit, working tree clean Entering 'omero-webtest' HEAD detached from 5bfef29 nothing to commit, working tree clean Entering 'rOMERO-gateway' HEAD detached from 7b5d64d nothing to commit, working tree clean Entering 'scripts' HEAD detached from 4b4c755 nothing to commit, working tree clean [detached HEAD 06f8173] Update component versions 1 file changed, 1 insertion(+), 1 deletion(-) Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 2026-10-09 23:47:36,843 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 2026-10-09 23:47:47,208 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 2026-10-09 23:47:49,934 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2026-10-09 23:47:55,096 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2026-10-09 23:48:58,285 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci [Pipeline] archiveArtifacts Archiving artifacts [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS