Console Output
Skipping 273 KB..
Full Log /.github/workflows) 2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2026-11-13 00:39:40,702 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-11-13 00:39:40,749 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-11-13 00:39:40,749 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-11-13 00:39:40,956 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-13 00:39:40,956 [ scc.git] DEBUG Calling 'git submodule update'
2026-11-13 00:39:41,060 [ scc.git] DEBUG Get sha1 of %s
2026-11-13 00:39:41,060 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-13 00:39:41,070 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-11-13 00:39:41,163 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-11-13 00:39:41,217 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f898d61f710> has no local changes
2026-11-13 00:39:41,217 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#124 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/124/)'
2026-11-13 00:39:41,346 [ scc.git] DEBUG [detached HEAD 39028f9] merge master -Dorg -Ssuccess-only
2026-11-13 00:39:41,349 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-13 00:39:41,349 [ scc.git] INFO Overriding base-branch from master to main
2026-11-13 00:39:41,349 [ scc.repo] DEBUG ## PRs found:
2026-11-13 00:39:41,699 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2026-11-13 00:39:42,247 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None
2026-11-13 00:39:42,747 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21/comments HTTP/1.1" 200 None
2026-11-13 00:39:43,364 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc?page=1 HTTP/1.1" 200 None
2026-11-13 00:39:43,856 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-11-13 00:39:44,355 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc?page=1 HTTP/1.1" 200 None
2026-11-13 00:39:44,817 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/d07067753650282c9e8cdbbeae37897b7ed0d4cc?per_page=1 HTTP/1.1" 200 2
2026-11-13 00:39:44,817 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import'
2026-11-13 00:39:45,348 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2026-11-13 00:39:45,899 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2026-11-13 00:39:46,458 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2026-11-13 00:39:47,057 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8?page=1 HTTP/1.1" 200 None
2026-11-13 00:39:47,556 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-11-13 00:39:48,079 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8?page=1 HTTP/1.1" 200 None
2026-11-13 00:39:48,531 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2026-11-13 00:39:48,531 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2026-11-13 00:39:48,531 [ scc.repo] DEBUG ## Branches found:
2026-11-13 00:39:48,531 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-11-13 00:39:48,532 [ scc.git] DEBUG Get sha1 of %s
2026-11-13 00:39:48,532 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-13 00:39:48,548 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2026-11-13 00:39:48,564 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-11-13 00:39:48,564 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2026-11-13 00:39:48,586 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2026-11-13 00:39:48,715 [ scc.git] DEBUG Updating 8f3c313..4e1e685
2026-11-13 00:39:49,159 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/23 HTTP/1.1" 200 16957
2026-11-13 00:39:49,808 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/20 HTTP/1.1" 200 17011
2026-11-13 00:39:49,809 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2026-11-13 00:39:50,333 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2026-11-13 00:39:50,333 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2026-11-13 00:39:50,354 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head'
2026-11-13 00:39:51,086 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2026-11-13 00:39:51,086 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD
2026-11-13 00:39:51,108 [ scc.git] DEBUG ## Unique users: []
2026-11-13 00:39:51,108 [ scc.git] DEBUG Get sha1 of %s
2026-11-13 00:39:51,108 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-13 00:39:51,121 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-11-13 00:39:51,148 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-13 00:39:51,159 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-11-13 00:39:51,356 [ scc.git] DEBUG Auto-merging README.rst
2026-11-13 00:39:51,356 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2026-11-13 00:39:51,356 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2026-11-13 00:39:51,356 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2026-11-13 00:39:51,381 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-11-13 00:39:51,382 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-11-13 00:39:51,421 [ scc.git] DEBUG Calling 'git reset --hard 4e1e685dff22136abfd2626f6fd6eaf985aba368'
2026-11-13 00:39:51,528 [ scc.git] DEBUG HEAD is now at 4e1e685 Merge pull request #23 from lubianat/patch-1
2026-11-13 00:39:51,732 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-13 00:39:51,733 [ scc.git] DEBUG Calling 'git merge-base 4e1e685dff22136abfd2626f6fd6eaf985aba368 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-11-13 00:39:51,755 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..4e1e685dff22136abfd2626f6fd6eaf985aba368'
2026-11-13 00:39:51,772 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#124](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/124/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/124/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2026-11-13 00:39:51,781 [ scc.config] DEBUG Found github.token
2026-11-13 00:39:51,781 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2026-11-13 00:39:51,781 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2026-11-13 00:39:51,818 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-13 00:39:51,836 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2026-11-13 00:39:52,009 [ scc.git] DEBUG Auto-merging README.rst
2026-11-13 00:39:52,009 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2026-11-13 00:39:52,059 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-11-13 00:39:52,120 [ scc.git] DEBUG README.rst | 3 +
2026-11-13 00:39:52,121 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++
2026-11-13 00:39:52,121 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 +
2026-11-13 00:39:52,121 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++-
2026-11-13 00:39:52,121 [ scc.git] DEBUG setup.py | 5 +-
2026-11-13 00:39:52,121 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-)
2026-11-13 00:39:52,121 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html
2026-11-13 00:39:52,318 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-13 00:39:52,319 [ scc.git] DEBUG Calling 'git submodule update'
2026-11-13 00:39:52,431 [ scc.git] DEBUG Get sha1 of %s
2026-11-13 00:39:52,431 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-13 00:39:52,444 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-11-13 00:39:52,539 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-11-13 00:39:52,586 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f898f592550> has no local changes
2026-11-13 00:39:52,586 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#124 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/124/)'
2026-11-13 00:39:52,720 [ scc.git] DEBUG [detached HEAD ab36d1e] merge master -Dorg -Ssuccess-only
2026-11-13 00:39:52,721 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-13 00:39:52,721 [ scc.repo] DEBUG ## PRs found:
2026-11-13 00:39:53,041 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 None
2026-11-13 00:39:53,556 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/issues/25 HTTP/1.1" 200 None
2026-11-13 00:39:53,557 [ scc.repo] DEBUG # ... Include label: dependencies
2026-11-13 00:39:54,184 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9?page=1 HTTP/1.1" 200 None
2026-11-13 00:39:54,695 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-11-13 00:39:55,274 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9?page=1 HTTP/1.1" 200 None
2026-11-13 00:39:55,755 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/statuses/c73bedb717b9ecce0af666245d3486aa5a2dafe9?per_page=1 HTTP/1.1" 200 2
2026-11-13 00:39:55,755 [ scc.repo] DEBUG - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-11-13 00:39:55,755 [ scc.repo] DEBUG ## Branches found:
2026-11-13 00:39:55,755 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-11-13 00:39:55,756 [ scc.git] DEBUG Get sha1 of %s
2026-11-13 00:39:55,756 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-13 00:39:55,777 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-11-13 00:39:55,792 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-11-13 00:39:55,792 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-11-13 00:39:55,811 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-11-13 00:39:55,868 [ scc.git] DEBUG Already up to date.
2026-11-13 00:39:55,869 [ scc.git] DEBUG Calling 'git fetch origin pull/25/head'
2026-11-13 00:39:56,400 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-weberror
2026-11-13 00:39:56,400 [ scc.git] DEBUG * branch refs/pull/25/head -> FETCH_HEAD
2026-11-13 00:39:56,420 [ scc.git] DEBUG ## Unique users: []
2026-11-13 00:39:56,420 [ scc.git] DEBUG Get sha1 of %s
2026-11-13 00:39:56,421 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-13 00:39:56,432 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2026-11-13 00:39:56,450 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-13 00:39:56,461 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2026-11-13 00:39:56,615 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-11-13 00:39:56,667 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-11-13 00:39:56,667 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-11-13 00:39:56,862 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-13 00:39:56,863 [ scc.git] DEBUG Calling 'git submodule update'
2026-11-13 00:39:56,962 [ scc.git] DEBUG Get sha1 of %s
2026-11-13 00:39:56,962 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-13 00:39:56,974 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-11-13 00:39:57,069 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-11-13 00:39:57,110 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f898c429710> has no local changes
2026-11-13 00:39:57,110 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#124 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/124/)'
2026-11-13 00:39:57,242 [ scc.git] DEBUG [detached HEAD c2e84de] merge master -Dorg -Ssuccess-only
2026-11-13 00:39:57,244 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-13 00:39:57,244 [ scc.repo] DEBUG ## PRs found:
2026-11-13 00:39:57,567 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 None
2026-11-13 00:39:58,104 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/issues/37 HTTP/1.1" 200 None
2026-11-13 00:39:58,105 [ scc.repo] DEBUG # ... Include label: dependencies
2026-11-13 00:39:58,784 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478?page=1 HTTP/1.1" 200 None
2026-11-13 00:39:59,313 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-11-13 00:39:59,820 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478?page=1 HTTP/1.1" 200 None
2026-11-13 00:40:00,293 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/statuses/8cf5f7e65ae8e945b134e41e77bc13a785aff478?per_page=1 HTTP/1.1" 200 2
2026-11-13 00:40:00,293 [ scc.repo] DEBUG - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-11-13 00:40:00,293 [ scc.repo] DEBUG ## Branches found:
2026-11-13 00:40:00,293 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-11-13 00:40:00,294 [ scc.git] DEBUG Get sha1 of %s
2026-11-13 00:40:00,294 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-13 00:40:00,310 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-11-13 00:40:00,326 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-11-13 00:40:00,327 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-11-13 00:40:00,344 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-11-13 00:40:00,386 [ scc.git] DEBUG Already up to date.
2026-11-13 00:40:00,386 [ scc.git] DEBUG Calling 'git fetch origin pull/37/head'
2026-11-13 00:40:00,790 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-webtest
2026-11-13 00:40:00,790 [ scc.git] DEBUG * branch refs/pull/37/head -> FETCH_HEAD
2026-11-13 00:40:00,811 [ scc.git] DEBUG ## Unique users: []
2026-11-13 00:40:00,811 [ scc.git] DEBUG Get sha1 of %s
2026-11-13 00:40:00,811 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-13 00:40:00,823 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2026-11-13 00:40:00,841 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-13 00:40:00,853 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 37 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2026-11-13 00:40:01,020 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-11-13 00:40:01,101 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-11-13 00:40:01,101 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-11-13 00:40:01,305 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-13 00:40:01,305 [ scc.git] DEBUG Calling 'git submodule update'
2026-11-13 00:40:01,415 [ scc.git] DEBUG Get sha1 of %s
2026-11-13 00:40:01,415 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-13 00:40:01,428 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-11-13 00:40:01,532 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-11-13 00:40:01,581 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f898c442f10> has no local changes
2026-11-13 00:40:01,581 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#124 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/124/)'
2026-11-13 00:40:01,695 [ scc.git] DEBUG [detached HEAD 490e1aa] merge master -Dorg -Ssuccess-only
2026-11-13 00:40:01,697 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-13 00:40:01,697 [ scc.repo] DEBUG ## PRs found:
2026-11-13 00:40:01,924 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 2
2026-11-13 00:40:01,924 [ scc.repo] DEBUG ## Branches found:
2026-11-13 00:40:01,924 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-11-13 00:40:01,925 [ scc.git] DEBUG Get sha1 of %s
2026-11-13 00:40:01,925 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-13 00:40:01,941 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-11-13 00:40:01,957 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-11-13 00:40:01,957 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-11-13 00:40:01,987 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-11-13 00:40:02,028 [ scc.git] DEBUG Already up to date.
2026-11-13 00:40:02,028 [ scc.git] DEBUG ## Unique users: []
2026-11-13 00:40:02,028 [ scc.git] DEBUG Get sha1 of %s
2026-11-13 00:40:02,028 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-13 00:40:02,042 [ scc.git] DEBUG Calling 'git submodule update'
2026-11-13 00:40:02,150 [ scc.git] DEBUG Get sha1 of %s
2026-11-13 00:40:02,150 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-13 00:40:02,160 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-11-13 00:40:02,254 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-11-13 00:40:02,346 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f898c46b7d0> has no local changes
2026-11-13 00:40:02,346 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Generated by OMERO-plugins-push#124 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/124/)'
2026-11-13 00:40:02,457 [ scc.git] DEBUG [detached HEAD c895ee5] merge master -Dorg -Ssuccess-only
2026-11-13 00:40:02,460 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-13 00:40:02,460 [ scc.git] INFO Overriding base-branch from master to develop
2026-11-13 00:40:02,460 [ scc.repo] DEBUG ## PRs found:
2026-11-13 00:40:02,862 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2026-11-13 00:40:03,370 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/236 HTTP/1.1" 200 None
2026-11-13 00:40:03,906 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/36fd91e019a51df089516f63208bb80f12f39179?page=1 HTTP/1.1" 200 None
2026-11-13 00:40:04,470 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/36fd91e019a51df089516f63208bb80f12f39179/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-11-13 00:40:04,990 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/36fd91e019a51df089516f63208bb80f12f39179/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-11-13 00:40:05,487 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/36fd91e019a51df089516f63208bb80f12f39179?page=1 HTTP/1.1" 200 None
2026-11-13 00:40:05,953 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/36fd91e019a51df089516f63208bb80f12f39179?per_page=1 HTTP/1.1" 200 2
2026-11-13 00:40:05,954 [ scc.repo] DEBUG - PR 236 will-moore 'Rename text column to shape_text to be more explicit'
2026-11-13 00:40:06,472 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/232 HTTP/1.1" 200 None
2026-11-13 00:40:07,001 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f?page=1 HTTP/1.1" 200 None
2026-11-13 00:40:07,527 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-11-13 00:40:08,074 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-11-13 00:40:08,594 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f?page=1 HTTP/1.1" 200 None
2026-11-13 00:40:09,074 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/e190baa635f40826befc84321719243092ee849f?per_page=1 HTTP/1.1" 200 2
2026-11-13 00:40:09,075 [ scc.repo] DEBUG - PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`'
2026-11-13 00:40:09,075 [ scc.repo] DEBUG ## Branches found:
2026-11-13 00:40:09,075 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-11-13 00:40:09,075 [ scc.git] DEBUG Get sha1 of %s
2026-11-13 00:40:09,075 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-13 00:40:09,090 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2026-11-13 00:40:09,116 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-11-13 00:40:09,116 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2026-11-13 00:40:09,281 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2026-11-13 00:40:09,553 [ scc.git] DEBUG Updating 4b4c755..636540e
2026-11-13 00:40:09,936 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/235 HTTP/1.1" 200 16917
2026-11-13 00:40:10,746 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/231 HTTP/1.1" 200 15981
2026-11-13 00:40:11,469 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/229 HTTP/1.1" 200 16955
2026-11-13 00:40:12,034 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/223 HTTP/1.1" 200 16867
2026-11-13 00:40:12,613 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/230 HTTP/1.1" 200 16558
2026-11-13 00:40:13,127 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/228 HTTP/1.1" 200 27438
2026-11-13 00:40:13,697 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 15967
2026-11-13 00:40:14,275 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 16464
2026-11-13 00:40:14,276 [ scc.git] DEBUG Calling 'git fetch origin pull/232/head'
2026-11-13 00:40:14,821 [ scc.git] DEBUG From https://github.com/ome/scripts
2026-11-13 00:40:14,821 [ scc.git] DEBUG * branch refs/pull/232/head -> FETCH_HEAD
2026-11-13 00:40:14,845 [ scc.git] DEBUG Calling 'git fetch origin pull/236/head'
2026-11-13 00:40:15,660 [ scc.git] DEBUG From https://github.com/ome/scripts
2026-11-13 00:40:15,660 [ scc.git] DEBUG * branch refs/pull/236/head -> FETCH_HEAD
2026-11-13 00:40:15,679 [ scc.git] DEBUG ## Unique users: []
2026-11-13 00:40:15,679 [ scc.git] DEBUG Get sha1 of %s
2026-11-13 00:40:15,679 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-13 00:40:15,691 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...e190baa635f40826befc84321719243092ee849f'
2026-11-13 00:40:15,739 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-13 00:40:15,751 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 232 (Add Auto header detection to `Populate_Metadata.py`) e190baa635f40826befc84321719243092ee849f'
2026-11-13 00:40:15,988 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-11-13 00:40:16,049 [ scc.git] DEBUG omero/import_scripts/Populate_Metadata.py | 26 ++++++++++++++++++++++++--
2026-11-13 00:40:16,049 [ scc.git] DEBUG 1 file changed, 24 insertions(+), 2 deletions(-)
2026-11-13 00:40:16,255 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-13 00:40:16,255 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...36fd91e019a51df089516f63208bb80f12f39179'
2026-11-13 00:40:16,314 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-13 00:40:16,326 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 236 (Rename text column to shape_text to be more explicit) 36fd91e019a51df089516f63208bb80f12f39179'
2026-11-13 00:40:16,539 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-11-13 00:40:16,604 [ scc.git] DEBUG omero/export_scripts/Batch_ROI_Export.py | 6 ++----
2026-11-13 00:40:16,604 [ scc.git] DEBUG test/integration/test_export_scripts.py | 2 +-
2026-11-13 00:40:16,604 [ scc.git] DEBUG 2 files changed, 3 insertions(+), 5 deletions(-)
2026-11-13 00:40:16,799 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-13 00:40:16,800 [ scc.git] DEBUG Calling 'git submodule update'
2026-11-13 00:40:16,905 [ scc.git] DEBUG Get sha1 of %s
2026-11-13 00:40:16,905 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-13 00:40:16,932 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-11-13 00:40:17,030 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-11-13 00:40:17,086 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f898c452710> has no local changes
2026-11-13 00:40:17,086 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Updating 4b4c755..636540e
Previously merged:
- PR 235 will-moore 'Batch roi export tags'
- PR 231 jburel 'Create Release '
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`'
- PR 236 will-moore 'Rename text column to shape_text to be more explicit'
Generated by OMERO-plugins-push#124 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/124/)'
2026-11-13 00:40:17,250 [ scc.git] DEBUG [detached HEAD bc40f2b] merge master -Dorg -Ssuccess-only
2026-11-13 00:40:17,251 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-13 00:40:17,251 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-11-13 00:40:17,472 [ scc.config] DEBUG Found submodule.figure.url
2026-11-13 00:40:17,673 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-13 00:40:17,706 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2026-11-13 00:40:18,130 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-13 00:40:18,156 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2026-11-13 00:40:18,162 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2026-11-13 00:40:18,573 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-13 00:40:18,613 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2026-11-13 00:40:18,622 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2026-11-13 00:40:19,067 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-13 00:40:19,095 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2026-11-13 00:40:19,101 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2026-11-13 00:40:19,514 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-13 00:40:19,549 [ scc.config] DEBUG Found submodule.omero-figure.url
2026-11-13 00:40:19,965 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-13 00:40:19,988 [ scc.config] DEBUG Found submodule.omero-figure.branch
2026-11-13 00:40:19,996 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2026-11-13 00:40:20,421 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-13 00:40:20,445 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2026-11-13 00:40:20,452 [ scc.config] DEBUG Found submodule.omero-gallery.url
2026-11-13 00:40:20,885 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-13 00:40:20,910 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2026-11-13 00:40:20,918 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2026-11-13 00:40:21,327 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-13 00:40:21,355 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2026-11-13 00:40:21,363 [ scc.config] DEBUG Found submodule.omero-mapr.url
2026-11-13 00:40:21,752 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-13 00:40:21,781 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2026-11-13 00:40:21,788 [ scc.config] DEBUG Found submodule.omero-metadata.url
2026-11-13 00:40:22,189 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-13 00:40:22,218 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2026-11-13 00:40:22,225 [ scc.config] DEBUG Found submodule.omero-parade.url
2026-11-13 00:40:22,656 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-13 00:40:22,684 [ scc.config] DEBUG Found submodule.omero-parade.branch
2026-11-13 00:40:22,691 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2026-11-13 00:40:23,101 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-13 00:40:23,127 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2026-11-13 00:40:23,134 [ scc.config] DEBUG Found submodule.omero-rois.url
2026-11-13 00:40:23,544 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-13 00:40:23,575 [ scc.config] DEBUG Found submodule.omero-signup.url
2026-11-13 00:40:24,031 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-13 00:40:24,061 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2026-11-13 00:40:24,499 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-13 00:40:24,531 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2026-11-13 00:40:24,538 [ scc.config] DEBUG Found submodule.omero-upload.url
2026-11-13 00:40:24,928 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-13 00:40:24,960 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2026-11-13 00:40:25,359 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-13 00:40:25,391 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2026-11-13 00:40:25,811 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-13 00:40:25,843 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2026-11-13 00:40:25,851 [ scc.config] DEBUG Found submodule.omero-weberror.url
2026-11-13 00:40:26,243 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-13 00:40:26,288 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2026-11-13 00:40:26,296 [ scc.config] DEBUG Found submodule.omero-webtest.url
2026-11-13 00:40:26,685 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-13 00:40:26,713 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2026-11-13 00:40:26,722 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2026-11-13 00:40:27,132 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-13 00:40:27,160 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2026-11-13 00:40:27,167 [ scc.config] DEBUG Found submodule.scripts.url
2026-11-13 00:40:27,574 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-13 00:40:27,598 [ scc.config] DEBUG Found submodule.scripts.branch
2026-11-13 00:40:27,598 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-11-13 00:40:29,383 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f898fde7410> has local changes
2026-11-13 00:40:29,384 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
- PR 435 will-moore 'Add omero-biofilefinder as a submodule'
Repository: ome/figure
Excluded PRs:
- PR 12 will-moore 'Browser based export' (exclude comment)
- PR 9 will-moore 'Save omezarr collection' (stage: draft)
Updating 3935875..48591c0
Previously merged:
- PR 5 will-moore 'Add sample_figures/ngff_images_figure.json'
- PR 24 Tom-TBT 'Label selection timeout & blur fix'
- PR 20 will-moore 'Hide export dropdown unless omero'
- PR 19 Rdornier 'Fix rectangle crop'
- PR 14 will-moore 'App served by omero env'
- PR 17 Rdornier 'Do not crop rotated panel at export'
- PR 15 will-moore 'Replace navbar 'OMERO' with 'figure' and OME logo'
Merged PRs:
- PR 21 tcompa 'Avoid request to `WEBGATEWAYINDEX + "open_with/` if `APP_SERVED_BY_OMERO = false`'
- PR 26 will-moore 'Remove python script'
- PR 30 will-moore 'License to BSD'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Merged PRs:
- PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-cli-render
Excluded PRs:
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Updating ce6e13c..68b7303
Previously merged:
- PR 74 jburel 'Replace manual changelog by automated GH release step'
- PR 75 jburel 'Sort the new channels to ensure settings are set'
- PR 71 dominikl 'Escape slash character in image names'
- PR 69 dominikl 'Fix help text for impo/export commands'
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..d5f88d8
Previously merged:
- PR 193 dominikl 'Only parse import uris if stated'
- PR 182 will-moore 'Revert "Remove support for Plate import"'
- PR 194 will-moore 'Update uk1s3.embassy links to livingobjects'
- PR 197 pwalczysko 'Fix pragma'
- PR 196 will-moore 'Storage options only if needed'
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py'
- PR 192 jburel 'Set Omero pixel size'
- PR 186 jburel 'Create release from tag'
- PR 187 dominikl 'Fix target-by-name option'
- PR 180 will-moore 'Import command'
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 174 will-moore 'Skip wells'
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
Repository: ome/omero-figure
Excluded PRs:
- PR 715 Rdornier 'Fix VSI pyramids rendering' (user: Rdornier)
- PR 712 dependabot[bot] 'Bump vite from 8.0.16 to 8.1.6' (status: failure)
Updating 9cc36cde..3195c3df
Previously merged:
- PR 704 jburel 'Revert commit 49ae9c9'
- PR 703 will-moore 'Readme remove rc'
- PR 700 will-moore 'Fix parentheses in zoom level for loop for export script'
- PR 692 will-moore 'colorbar lut background fix'
- PR 701 will-moore 'bump nanoid to 3.3.18 with 'npm audit fix''
- PR 698 dependabot[bot] 'Bump dompurify from 3.4.9 to 3.4.13'
- PR 697 dependabot[bot] 'Bump postcss from 8.5.15 to 8.5.25'
- PR 695 dependabot[bot] 'Bump immutable from 5.1.6 to 5.1.9'
- PR 693 dependabot[bot] 'Bump dompurify from 3.4.0 to 3.4.9'
- PR 691 dependabot[bot] 'Bump esbuild and vite'
- PR 686 will-moore 'Add note about zarr etc requirement for export script with zarr images'
- PR 690 dependabot[bot] 'Bump postcss from 8.5.3 to 8.5.15'
- PR 681 dependabot[bot] 'Bump dompurify from 3.3.2 to 3.4.0'
- PR 688 will-moore 'app handles ?image=1 without needing /new?image=1'
- PR 685 will-moore 'Fix static files links for release build'
- PR 683 will-moore 'Add touch support for clicking on single panel'
- PR 680 will-moore 'Use --pre install for export script in README'
- PR 684 will-moore 'Fix PKG_VERSION fix in publish_pypi.yml'
- PR 682 will-moore 'Enable pre-release rc workflow with bumpversion and publish to pypi'
- PR 679 will-moore 'Remove commit from gist demoUrl to load latest, with livingobjects URLs'
- PR 677 dependabot[bot] 'Bump vite from 6.4.1 to 6.4.2'
- PR 666 will-moore 'Standalone app'
- PR 676 dependabot[bot] 'Bump picomatch'
- PR 669 will-moore 'Standalone python script'
- PR 662 will-moore 'Export script handles OME-zarr images'
- PR 663 will-moore 'Zarr'
- PR 674 dependabot[bot] 'Bump immutable from 4.1.0 to 4.3.8'
- PR 675 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.2'
- PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8'
- PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues'
- PR 667 Tom-TBT 'Label suggestion interface'
- PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID'
- PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
- PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0'
- PR 664 Nirkan 'Handle many channels '
- PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
- PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540'
- PR 661 Rdornier 'Align to grid - check if panels are already in the grid'
- PR 649 jburel 'Replace manual changelog by automated GH release step'
- PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
- PR 637 Rdornier 'Fix scalebar position'
- PR 600 Rdornier 'Label on rois'
- PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
- PR 651 Rdornier 'More compliant align to grid'
- PR 650 jburel 'Bump Python version'
- PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
- PR 646 JensWendt 'fix word wrap of image names'
- PR 612 will-moore 'Script version'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 616 Rdornier 'Fix labels around border'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 706 will-moore 'Figure repo migration'
- PR 714 Rdornier 'Fix scalebar label'
Conflicting PRs (not included):
- PR 711 dependabot[bot] 'Bump source-map-js from 1.2.1 to 1.2.2'
- PR 713 dependabot[bot] 'Bump dompurify from 3.4.13 to 3.4.17'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
- PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
Updating 7a798cee..106ca787
Previously merged:
- PR 586 dependabot[bot] 'Bump serialize-javascript from 7.1.2 to 7.1.4'
- PR 585 dependabot[bot] 'Bump body-parser'
- PR 584 dependabot[bot] 'Bump qs from 6.16.0 to 6.16.2'
- PR 583 dependabot[bot] 'Bump follow-redirects from 1.16.0 to 1.16.3'
- PR 582 dependabot[bot] 'Bump postcss-selector-parser from 6.0.13 to 6.1.5'
- PR 581 dependabot[bot] 'Bump fast-uri from 3.1.8 to 3.1.9'
- PR 580 dependabot[bot] 'Bump launch-editor from 2.14.1 to 2.14.2'
- PR 578 dependabot[bot] 'Bump compression from 1.8.1 to 1.8.2'
- PR 577 dependabot[bot] 'Bump source-map-js from 1.2.1 to 1.2.2'
- PR 576 dependabot[bot] 'Bump shell-quote from 1.10.0 to 1.12.0'
- PR 575 dependabot[bot] 'Bump proxy-addr from 2.0.7 to 2.0.8'
- PR 497 will-moore 'ROI Tags'
- PR 574 dependabot[bot] 'Bump minimatch from 3.1.2 to 3.1.5'
- PR 573 dependabot[bot] 'Bump serialize-javascript and mocha'
- PR 572 dependabot[bot] 'Bump brace-expansion from 1.1.13 to 1.1.21'
- PR 571 dependabot[bot] 'Bump fast-uri from 3.1.7 to 3.1.8'
- PR 570 dependabot[bot] 'Bump engine.io from 6.6.9 to 6.6.11'
- PR 568 dependabot[bot] 'Bump webpack-dev-middleware from 8.1.0 to 8.3.0'
- PR 566 dependabot[bot] 'Bump js-yaml from 4.1.0 to 4.3.2'
- PR 565 dependabot[bot] 'Bump qs and body-parser'
- PR 564 dependabot[bot] 'Bump fast-uri from 3.1.5 to 3.1.7'
- PR 567 will-moore 'Basic fix of prev/next shapes when shapes sorted'
- PR 562 will-moore 'Keyboard select roi'
- PR 563 will-moore 'Use POST data for imgRdef save'
- PR 559 dependabot[bot] 'Bump js-yaml and mocha'
- PR 558 dependabot[bot] 'Bump fast-uri from 3.1.4 to 3.1.5'
- PR 557 dependabot[bot] 'Bump socket.io-parser from 4.2.6 to 4.2.7'
- PR 541 will-moore 'Only add channel to tile request string if active'
- PR 556 dependabot[bot] 'Bump webpack-dev-server from 5.2.6 to 6.0.0'
- PR 554 dependabot[bot] 'Bump http-proxy-middleware from 2.0.9 to 2.0.10'
- PR 553 dependabot[bot] 'Bump postcss from 8.5.10 to 8.5.25'
- PR 552 dependabot[bot] 'Bump tmp from 0.2.6 to 0.2.7'
- PR 551 dependabot[bot] 'Bump body-parser from 1.20.5 to 1.20.6'
- PR 550 dependabot[bot] 'Bump webpack-dev-server from 5.2.4 to 5.2.6'
- PR 549 dependabot[bot] 'Bump shell-quote from 1.8.4 to 1.10.0'
- PR 548 dependabot[bot] 'Bump fast-uri from 3.1.2 to 3.1.4'
- PR 547 dependabot[bot] 'Bump websocket-driver from 0.7.4 to 0.7.5'
- PR 540 dependabot[bot] 'Bump @babel/core from 7.5.4 to 7.29.6'
- PR 539 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter'
- PR 537 dependabot[bot] 'Bump launch-editor from 2.13.2 to 2.14.1'
- PR 535 dependabot[bot] 'Bump tmp and eslint'
- PR 527 PollenGeo 'Add grid overlay feature with configurable cell size and labels'
- PR 534 will-moore 'Fix settings.md link to master branch. Move iviewer redirect settings'
- PR 533 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter'
- PR 530 dependabot[bot] 'Bump webpack-dev-server from 4.13.2 to 5.2.4'
- PR 528 dependabot[bot] 'Bump fast-uri from 3.1.0 to 3.1.2'
- PR 529 will-moore 'Image id and roi id initial params'
- PR 526 will-moore 'Add keyboard handling for Left, Right, Up, Down Arrows to pan'
- PR 525 dependabot[bot] 'Bump postcss from 8.4.31 to 8.5.10'
- PR 524 dependabot[bot] 'Bump protocol-buffers-schema from 3.3.2 to 3.6.1'
- PR 523 dependabot[bot] 'Bump follow-redirects from 1.15.6 to 1.16.0'
- PR 522 dependabot[bot] 'Bump lodash from 4.17.21 to 4.18.1'
- PR 521 dependabot[bot] 'Bump brace-expansion from 1.1.11 to 1.1.13'
- PR 520 dependabot[bot] 'Bump node-forge from 1.3.1 to 1.4.0'
- PR 519 dependabot[bot] 'Bump picomatch from 2.3.1 to 2.3.2'
- PR 518 dependabot[bot] 'Bump ajv from 6.12.6 to 6.14.0'
- PR 514 Tom-TBT 'Fix where interpolate_pixels server config is read from'
- PR 513 jburel 'Bump Python version'
- PR 512 jburel 'Replace manual changelog by automated GH release step'
- PR 465 will-moore 'Save as Figure'
- PR 517 will-moore 'Fix roi link permissions'
- PR 516 dependabot[bot] 'Bump socket.io-parser from 4.2.4 to 4.2.6'
- PR 510 joshmoore 'Re-enable omero-test-infra'
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 587 will-moore 'Roi columns add remove'
Conflicting PRs (not included):
- PR 532 will-moore 'Zarr layers'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
- PR 74 will-moore 'mapr extension of webclient' (exclude comment)
Already up to date.
Merged PRs:
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
- PR 97 JoshuaFortriede 'BUG Fix: use HTML value to replace HTML'
- PR 98 JoshuaFortriede 'use namespace with keys'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-metadata
Updating 3cd120c..6a653e4
Previously merged:
- PR 95 sbesson 'Remove manual CHANGELOG in favor of automated GitHub releases'
- PR 94 sbesson 'Cap pandas to 2.x and clean up unused dependencies'
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 92 dominikl 'add resolve_rois to projectwrapper'
Conflicting PRs (not included):
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Updating bdfeb5e..fc9ff96
Previously merged:
- PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml'
- PR 35 will-moore 'Add roi to array functions'
Repository: ome/omero-signup
Updating be76813..5a64360
Previously merged:
- PR 24 pwalczysko 'Upgrade framework, pip, certifi, actions, fix typo'
- PR 23 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.14.3 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Merged PRs:
- PR 74 joshmoore 'Add 'ms' target for ./docker'
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/rOMERO-gateway
Already up to date.
Repository: ome/scripts
Updating 4b4c755..636540e
Previously merged:
- PR 235 will-moore 'Batch roi export tags'
- PR 231 jburel 'Create Release '
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`'
- PR 236 will-moore 'Rename text column to shape_text to be more explicit'
Generated by OMERO-plugins-push#124 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/124/)'
2026-11-13 00:40:29,861 [ scc.git] DEBUG [detached HEAD c9725e7] merge master -Dorg -Ssuccess-only
2026-11-13 00:40:29,861 [ scc.git] DEBUG 24 files changed, 46 insertions(+), 46 deletions(-)
2026-11-13 00:40:29,862 [ scc.merge] INFO Repository: ome/omero-plugins
2026-11-13 00:40:29,862 [ scc.merge] INFO Already up to date.
2026-11-13 00:40:29,862 [ scc.merge] INFO
2026-11-13 00:40:29,862 [ scc.merge] INFO Merged PRs:
2026-11-13 00:40:29,862 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2026-11-13 00:40:29,862 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2026-11-13 00:40:29,862 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2026-11-13 00:40:29,862 [ scc.merge] INFO - PR 435 will-moore 'Add omero-biofilefinder as a submodule'
2026-11-13 00:40:29,862 [ scc.merge] INFO
2026-11-13 00:40:29,862 [ scc.merge] INFO Repository: ome/figure
2026-11-13 00:40:29,862 [ scc.merge] INFO Excluded PRs:
2026-11-13 00:40:29,863 [ scc.merge] INFO - PR 12 will-moore 'Browser based export' (exclude comment)
2026-11-13 00:40:29,863 [ scc.merge] INFO - PR 9 will-moore 'Save omezarr collection' (stage: draft)
2026-11-13 00:40:29,863 [ scc.merge] INFO Updating 3935875..48591c0
2026-11-13 00:40:29,863 [ scc.merge] INFO Previously merged:
2026-11-13 00:40:29,863 [ scc.merge] INFO - PR 5 will-moore 'Add sample_figures/ngff_images_figure.json'
2026-11-13 00:40:29,863 [ scc.merge] INFO - PR 24 Tom-TBT 'Label selection timeout & blur fix'
2026-11-13 00:40:29,863 [ scc.merge] INFO - PR 20 will-moore 'Hide export dropdown unless omero'
2026-11-13 00:40:29,863 [ scc.merge] INFO - PR 19 Rdornier 'Fix rectangle crop'
2026-11-13 00:40:29,863 [ scc.merge] INFO - PR 14 will-moore 'App served by omero env'
2026-11-13 00:40:29,863 [ scc.merge] INFO - PR 17 Rdornier 'Do not crop rotated panel at export'
2026-11-13 00:40:29,863 [ scc.merge] INFO - PR 15 will-moore 'Replace navbar 'OMERO' with 'figure' and OME logo'
2026-11-13 00:40:29,863 [ scc.merge] INFO
2026-11-13 00:40:29,863 [ scc.merge] INFO Merged PRs:
2026-11-13 00:40:29,863 [ scc.merge] INFO - PR 21 tcompa 'Avoid request to `WEBGATEWAYINDEX + "open_with/` if `APP_SERVED_BY_OMERO = false`'
2026-11-13 00:40:29,863 [ scc.merge] INFO - PR 26 will-moore 'Remove python script'
2026-11-13 00:40:29,863 [ scc.merge] INFO - PR 30 will-moore 'License to BSD'
2026-11-13 00:40:29,863 [ scc.merge] INFO
2026-11-13 00:40:29,863 [ scc.merge] INFO Repository: ome/minimal-omero-client
2026-11-13 00:40:29,863 [ scc.merge] INFO Already up to date.
2026-11-13 00:40:29,863 [ scc.merge] INFO
2026-11-13 00:40:29,863 [ scc.merge] INFO
2026-11-13 00:40:29,863 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2026-11-13 00:40:29,863 [ scc.merge] INFO Excluded PRs:
2026-11-13 00:40:29,863 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2026-11-13 00:40:29,863 [ scc.merge] INFO Already up to date.
2026-11-13 00:40:29,863 [ scc.merge] INFO
2026-11-13 00:40:29,863 [ scc.merge] INFO Merged PRs:
2026-11-13 00:40:29,863 [ scc.merge] INFO - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-11-13 00:40:29,863 [ scc.merge] INFO
2026-11-13 00:40:29,863 [ scc.merge] INFO Repository: ome/omero-cli-render
2026-11-13 00:40:29,863 [ scc.merge] INFO Excluded PRs:
2026-11-13 00:40:29,863 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2026-11-13 00:40:29,863 [ scc.merge] INFO Updating ce6e13c..68b7303
2026-11-13 00:40:29,863 [ scc.merge] INFO Previously merged:
2026-11-13 00:40:29,863 [ scc.merge] INFO - PR 74 jburel 'Replace manual changelog by automated GH release step'
2026-11-13 00:40:29,863 [ scc.merge] INFO - PR 75 jburel 'Sort the new channels to ensure settings are set'
2026-11-13 00:40:29,863 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2026-11-13 00:40:29,863 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2026-11-13 00:40:29,863 [ scc.merge] INFO
2026-11-13 00:40:29,863 [ scc.merge] INFO Merged PRs:
2026-11-13 00:40:29,863 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2026-11-13 00:40:29,863 [ scc.merge] INFO
2026-11-13 00:40:29,863 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2026-11-13 00:40:29,863 [ scc.merge] INFO Excluded PRs:
2026-11-13 00:40:29,863 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2026-11-13 00:40:29,863 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2026-11-13 00:40:29,863 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2026-11-13 00:40:29,863 [ scc.merge] INFO Updating 11d3587..d5f88d8
2026-11-13 00:40:29,863 [ scc.merge] INFO Previously merged:
2026-11-13 00:40:29,863 [ scc.merge] INFO - PR 193 dominikl 'Only parse import uris if stated'
2026-11-13 00:40:29,863 [ scc.merge] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"'
2026-11-13 00:40:29,863 [ scc.merge] INFO - PR 194 will-moore 'Update uk1s3.embassy links to livingobjects'
2026-11-13 00:40:29,863 [ scc.merge] INFO - PR 197 pwalczysko 'Fix pragma'
2026-11-13 00:40:29,863 [ scc.merge] INFO - PR 196 will-moore 'Storage options only if needed'
2026-11-13 00:40:29,863 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py'
2026-11-13 00:40:29,863 [ scc.merge] INFO - PR 192 jburel 'Set Omero pixel size'
2026-11-13 00:40:29,863 [ scc.merge] INFO - PR 186 jburel 'Create release from tag'
2026-11-13 00:40:29,863 [ scc.merge] INFO - PR 187 dominikl 'Fix target-by-name option'
2026-11-13 00:40:29,863 [ scc.merge] INFO - PR 180 will-moore 'Import command'
2026-11-13 00:40:29,863 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2026-11-13 00:40:29,863 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2026-11-13 00:40:29,863 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2026-11-13 00:40:29,863 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2026-11-13 00:40:29,863 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2026-11-13 00:40:29,863 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2026-11-13 00:40:29,863 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-11-13 00:40:29,863 [ scc.merge] INFO
2026-11-13 00:40:29,863 [ scc.merge] INFO Conflicting PRs (not included):
2026-11-13 00:40:29,863 [ scc.merge] INFO - PR 174 will-moore 'Skip wells'
2026-11-13 00:40:29,863 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2026-11-13 00:40:29,863 [ scc.merge] INFO
2026-11-13 00:40:29,864 [ scc.merge] INFO Repository: ome/omero-figure
2026-11-13 00:40:29,864 [ scc.merge] INFO Excluded PRs:
2026-11-13 00:40:29,864 [ scc.merge] INFO - PR 715 Rdornier 'Fix VSI pyramids rendering' (user: Rdornier)
2026-11-13 00:40:29,864 [ scc.merge] INFO - PR 712 dependabot[bot] 'Bump vite from 8.0.16 to 8.1.6' (status: failure)
2026-11-13 00:40:29,864 [ scc.merge] INFO Updating 9cc36cde..3195c3df
2026-11-13 00:40:29,864 [ scc.merge] INFO Previously merged:
2026-11-13 00:40:29,864 [ scc.merge] INFO - PR 704 jburel 'Revert commit 49ae9c9'
2026-11-13 00:40:29,864 [ scc.merge] INFO - PR 703 will-moore 'Readme remove rc'
2026-11-13 00:40:29,864 [ scc.merge] INFO - PR 700 will-moore 'Fix parentheses in zoom level for loop for export script'
2026-11-13 00:40:29,864 [ scc.merge] INFO - PR 692 will-moore 'colorbar lut background fix'
2026-11-13 00:40:29,864 [ scc.merge] INFO - PR 701 will-moore 'bump nanoid to 3.3.18 with 'npm audit fix''
2026-11-13 00:40:29,864 [ scc.merge] INFO - PR 698 dependabot[bot] 'Bump dompurify from 3.4.9 to 3.4.13'
2026-11-13 00:40:29,864 [ scc.merge] INFO - PR 697 dependabot[bot] 'Bump postcss from 8.5.15 to 8.5.25'
2026-11-13 00:40:29,864 [ scc.merge] INFO - PR 695 dependabot[bot] 'Bump immutable from 5.1.6 to 5.1.9'
2026-11-13 00:40:29,864 [ scc.merge] INFO - PR 693 dependabot[bot] 'Bump dompurify from 3.4.0 to 3.4.9'
2026-11-13 00:40:29,864 [ scc.merge] INFO - PR 691 dependabot[bot] 'Bump esbuild and vite'
2026-11-13 00:40:29,864 [ scc.merge] INFO - PR 686 will-moore 'Add note about zarr etc requirement for export script with zarr images'
2026-11-13 00:40:29,864 [ scc.merge] INFO - PR 690 dependabot[bot] 'Bump postcss from 8.5.3 to 8.5.15'
2026-11-13 00:40:29,864 [ scc.merge] INFO - PR 681 dependabot[bot] 'Bump dompurify from 3.3.2 to 3.4.0'
2026-11-13 00:40:29,864 [ scc.merge] INFO - PR 688 will-moore 'app handles ?image=1 without needing /new?image=1'
2026-11-13 00:40:29,864 [ scc.merge] INFO - PR 685 will-moore 'Fix static files links for release build'
2026-11-13 00:40:29,864 [ scc.merge] INFO - PR 683 will-moore 'Add touch support for clicking on single panel'
2026-11-13 00:40:29,864 [ scc.merge] INFO - PR 680 will-moore 'Use --pre install for export script in README'
2026-11-13 00:40:29,864 [ scc.merge] INFO - PR 684 will-moore 'Fix PKG_VERSION fix in publish_pypi.yml'
2026-11-13 00:40:29,864 [ scc.merge] INFO - PR 682 will-moore 'Enable pre-release rc workflow with bumpversion and publish to pypi'
2026-11-13 00:40:29,864 [ scc.merge] INFO - PR 679 will-moore 'Remove commit from gist demoUrl to load latest, with livingobjects URLs'
2026-11-13 00:40:29,864 [ scc.merge] INFO - PR 677 dependabot[bot] 'Bump vite from 6.4.1 to 6.4.2'
2026-11-13 00:40:29,864 [ scc.merge] INFO - PR 666 will-moore 'Standalone app'
2026-11-13 00:40:29,864 [ scc.merge] INFO - PR 676 dependabot[bot] 'Bump picomatch'
2026-11-13 00:40:29,864 [ scc.merge] INFO - PR 669 will-moore 'Standalone python script'
2026-11-13 00:40:29,864 [ scc.merge] INFO - PR 662 will-moore 'Export script handles OME-zarr images'
2026-11-13 00:40:29,864 [ scc.merge] INFO - PR 663 will-moore 'Zarr'
2026-11-13 00:40:29,864 [ scc.merge] INFO - PR 674 dependabot[bot] 'Bump immutable from 4.1.0 to 4.3.8'
2026-11-13 00:40:29,864 [ scc.merge] INFO - PR 675 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.2'
2026-11-13 00:40:29,864 [ scc.merge] INFO - PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8'
2026-11-13 00:40:29,864 [ scc.merge] INFO - PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues'
2026-11-13 00:40:29,864 [ scc.merge] INFO - PR 667 Tom-TBT 'Label suggestion interface'
2026-11-13 00:40:29,864 [ scc.merge] INFO - PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID'
2026-11-13 00:40:29,864 [ scc.merge] INFO - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
2026-11-13 00:40:29,864 [ scc.merge] INFO - PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0'
2026-11-13 00:40:29,864 [ scc.merge] INFO - PR 664 Nirkan 'Handle many channels '
2026-11-13 00:40:29,864 [ scc.merge] INFO - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
2026-11-13 00:40:29,864 [ scc.merge] INFO - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540'
2026-11-13 00:40:29,864 [ scc.merge] INFO - PR 661 Rdornier 'Align to grid - check if panels are already in the grid'
2026-11-13 00:40:29,864 [ scc.merge] INFO - PR 649 jburel 'Replace manual changelog by automated GH release step'
2026-11-13 00:40:29,864 [ scc.merge] INFO - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
2026-11-13 00:40:29,864 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2026-11-13 00:40:29,864 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2026-11-13 00:40:29,864 [ scc.merge] INFO - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
2026-11-13 00:40:29,864 [ scc.merge] INFO - PR 651 Rdornier 'More compliant align to grid'
2026-11-13 00:40:29,864 [ scc.merge] INFO - PR 650 jburel 'Bump Python version'
2026-11-13 00:40:29,864 [ scc.merge] INFO - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
2026-11-13 00:40:29,864 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2026-11-13 00:40:29,864 [ scc.merge] INFO - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
2026-11-13 00:40:29,864 [ scc.merge] INFO - PR 646 JensWendt 'fix word wrap of image names'
2026-11-13 00:40:29,865 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2026-11-13 00:40:29,865 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2026-11-13 00:40:29,865 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2026-11-13 00:40:29,865 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2026-11-13 00:40:29,865 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2026-11-13 00:40:29,865 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2026-11-13 00:40:29,865 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2026-11-13 00:40:29,865 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2026-11-13 00:40:29,865 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-11-13 00:40:29,865 [ scc.merge] INFO
2026-11-13 00:40:29,865 [ scc.merge] INFO Merged PRs:
2026-11-13 00:40:29,865 [ scc.merge] INFO - PR 706 will-moore 'Figure repo migration'
2026-11-13 00:40:29,865 [ scc.merge] INFO - PR 714 Rdornier 'Fix scalebar label'
2026-11-13 00:40:29,865 [ scc.merge] INFO
2026-11-13 00:40:29,865 [ scc.merge] INFO Conflicting PRs (not included):
2026-11-13 00:40:29,865 [ scc.merge] INFO - PR 711 dependabot[bot] 'Bump source-map-js from 1.2.1 to 1.2.2'
2026-11-13 00:40:29,865 [ scc.merge] INFO - PR 713 dependabot[bot] 'Bump dompurify from 3.4.13 to 3.4.17'
2026-11-13 00:40:29,865 [ scc.merge] INFO
2026-11-13 00:40:29,865 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2026-11-13 00:40:29,865 [ scc.merge] INFO Already up to date.
2026-11-13 00:40:29,865 [ scc.merge] INFO
2026-11-13 00:40:29,865 [ scc.merge] INFO Merged PRs:
2026-11-13 00:40:29,865 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2026-11-13 00:40:29,865 [ scc.merge] INFO - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-11-13 00:40:29,865 [ scc.merge] INFO
2026-11-13 00:40:29,865 [ scc.merge] INFO Repository: ome/omero-gallery
2026-11-13 00:40:29,865 [ scc.merge] INFO Already up to date.
2026-11-13 00:40:29,865 [ scc.merge] INFO
2026-11-13 00:40:29,865 [ scc.merge] INFO Merged PRs:
2026-11-13 00:40:29,865 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2026-11-13 00:40:29,865 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2026-11-13 00:40:29,865 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2026-11-13 00:40:29,865 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2026-11-13 00:40:29,865 [ scc.merge] INFO
2026-11-13 00:40:29,865 [ scc.merge] INFO Conflicting PRs (not included):
2026-11-13 00:40:29,865 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2026-11-13 00:40:29,865 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2026-11-13 00:40:29,865 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2026-11-13 00:40:29,865 [ scc.merge] INFO
2026-11-13 00:40:29,865 [ scc.merge] INFO Repository: ome/omero-iviewer
2026-11-13 00:40:29,865 [ scc.merge] INFO Excluded PRs:
2026-11-13 00:40:29,865 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2026-11-13 00:40:29,865 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2026-11-13 00:40:29,865 [ scc.merge] INFO Updating 7a798cee..106ca787
2026-11-13 00:40:29,865 [ scc.merge] INFO Previously merged:
2026-11-13 00:40:29,865 [ scc.merge] INFO - PR 586 dependabot[bot] 'Bump serialize-javascript from 7.1.2 to 7.1.4'
2026-11-13 00:40:29,865 [ scc.merge] INFO - PR 585 dependabot[bot] 'Bump body-parser'
2026-11-13 00:40:29,865 [ scc.merge] INFO - PR 584 dependabot[bot] 'Bump qs from 6.16.0 to 6.16.2'
2026-11-13 00:40:29,865 [ scc.merge] INFO - PR 583 dependabot[bot] 'Bump follow-redirects from 1.16.0 to 1.16.3'
2026-11-13 00:40:29,865 [ scc.merge] INFO - PR 582 dependabot[bot] 'Bump postcss-selector-parser from 6.0.13 to 6.1.5'
2026-11-13 00:40:29,865 [ scc.merge] INFO - PR 581 dependabot[bot] 'Bump fast-uri from 3.1.8 to 3.1.9'
2026-11-13 00:40:29,865 [ scc.merge] INFO - PR 580 dependabot[bot] 'Bump launch-editor from 2.14.1 to 2.14.2'
2026-11-13 00:40:29,865 [ scc.merge] INFO - PR 578 dependabot[bot] 'Bump compression from 1.8.1 to 1.8.2'
2026-11-13 00:40:29,865 [ scc.merge] INFO - PR 577 dependabot[bot] 'Bump source-map-js from 1.2.1 to 1.2.2'
2026-11-13 00:40:29,865 [ scc.merge] INFO - PR 576 dependabot[bot] 'Bump shell-quote from 1.10.0 to 1.12.0'
2026-11-13 00:40:29,865 [ scc.merge] INFO - PR 575 dependabot[bot] 'Bump proxy-addr from 2.0.7 to 2.0.8'
2026-11-13 00:40:29,865 [ scc.merge] INFO - PR 497 will-moore 'ROI Tags'
2026-11-13 00:40:29,865 [ scc.merge] INFO - PR 574 dependabot[bot] 'Bump minimatch from 3.1.2 to 3.1.5'
2026-11-13 00:40:29,865 [ scc.merge] INFO - PR 573 dependabot[bot] 'Bump serialize-javascript and mocha'
2026-11-13 00:40:29,865 [ scc.merge] INFO - PR 572 dependabot[bot] 'Bump brace-expansion from 1.1.13 to 1.1.21'
2026-11-13 00:40:29,865 [ scc.merge] INFO - PR 571 dependabot[bot] 'Bump fast-uri from 3.1.7 to 3.1.8'
2026-11-13 00:40:29,865 [ scc.merge] INFO - PR 570 dependabot[bot] 'Bump engine.io from 6.6.9 to 6.6.11'
2026-11-13 00:40:29,865 [ scc.merge] INFO - PR 568 dependabot[bot] 'Bump webpack-dev-middleware from 8.1.0 to 8.3.0'
2026-11-13 00:40:29,865 [ scc.merge] INFO - PR 566 dependabot[bot] 'Bump js-yaml from 4.1.0 to 4.3.2'
2026-11-13 00:40:29,865 [ scc.merge] INFO - PR 565 dependabot[bot] 'Bump qs and body-parser'
2026-11-13 00:40:29,865 [ scc.merge] INFO - PR 564 dependabot[bot] 'Bump fast-uri from 3.1.5 to 3.1.7'
2026-11-13 00:40:29,865 [ scc.merge] INFO - PR 567 will-moore 'Basic fix of prev/next shapes when shapes sorted'
2026-11-13 00:40:29,865 [ scc.merge] INFO - PR 562 will-moore 'Keyboard select roi'
2026-11-13 00:40:29,865 [ scc.merge] INFO - PR 563 will-moore 'Use POST data for imgRdef save'
2026-11-13 00:40:29,865 [ scc.merge] INFO - PR 559 dependabot[bot] 'Bump js-yaml and mocha'
2026-11-13 00:40:29,865 [ scc.merge] INFO - PR 558 dependabot[bot] 'Bump fast-uri from 3.1.4 to 3.1.5'
2026-11-13 00:40:29,866 [ scc.merge] INFO - PR 557 dependabot[bot] 'Bump socket.io-parser from 4.2.6 to 4.2.7'
2026-11-13 00:40:29,866 [ scc.merge] INFO - PR 541 will-moore 'Only add channel to tile request string if active'
2026-11-13 00:40:29,866 [ scc.merge] INFO - PR 556 dependabot[bot] 'Bump webpack-dev-server from 5.2.6 to 6.0.0'
2026-11-13 00:40:29,866 [ scc.merge] INFO - PR 554 dependabot[bot] 'Bump http-proxy-middleware from 2.0.9 to 2.0.10'
2026-11-13 00:40:29,866 [ scc.merge] INFO - PR 553 dependabot[bot] 'Bump postcss from 8.5.10 to 8.5.25'
2026-11-13 00:40:29,866 [ scc.merge] INFO - PR 552 dependabot[bot] 'Bump tmp from 0.2.6 to 0.2.7'
2026-11-13 00:40:29,866 [ scc.merge] INFO - PR 551 dependabot[bot] 'Bump body-parser from 1.20.5 to 1.20.6'
2026-11-13 00:40:29,866 [ scc.merge] INFO - PR 550 dependabot[bot] 'Bump webpack-dev-server from 5.2.4 to 5.2.6'
2026-11-13 00:40:29,866 [ scc.merge] INFO - PR 549 dependabot[bot] 'Bump shell-quote from 1.8.4 to 1.10.0'
2026-11-13 00:40:29,866 [ scc.merge] INFO - PR 548 dependabot[bot] 'Bump fast-uri from 3.1.2 to 3.1.4'
2026-11-13 00:40:29,866 [ scc.merge] INFO - PR 547 dependabot[bot] 'Bump websocket-driver from 0.7.4 to 0.7.5'
2026-11-13 00:40:29,866 [ scc.merge] INFO - PR 540 dependabot[bot] 'Bump @babel/core from 7.5.4 to 7.29.6'
2026-11-13 00:40:29,866 [ scc.merge] INFO - PR 539 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter'
2026-11-13 00:40:29,866 [ scc.merge] INFO - PR 537 dependabot[bot] 'Bump launch-editor from 2.13.2 to 2.14.1'
2026-11-13 00:40:29,866 [ scc.merge] INFO - PR 535 dependabot[bot] 'Bump tmp and eslint'
2026-11-13 00:40:29,866 [ scc.merge] INFO - PR 527 PollenGeo 'Add grid overlay feature with configurable cell size and labels'
2026-11-13 00:40:29,866 [ scc.merge] INFO - PR 534 will-moore 'Fix settings.md link to master branch. Move iviewer redirect settings'
2026-11-13 00:40:29,866 [ scc.merge] INFO - PR 533 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter'
2026-11-13 00:40:29,866 [ scc.merge] INFO - PR 530 dependabot[bot] 'Bump webpack-dev-server from 4.13.2 to 5.2.4'
2026-11-13 00:40:29,866 [ scc.merge] INFO - PR 528 dependabot[bot] 'Bump fast-uri from 3.1.0 to 3.1.2'
2026-11-13 00:40:29,866 [ scc.merge] INFO - PR 529 will-moore 'Image id and roi id initial params'
2026-11-13 00:40:29,866 [ scc.merge] INFO - PR 526 will-moore 'Add keyboard handling for Left, Right, Up, Down Arrows to pan'
2026-11-13 00:40:29,866 [ scc.merge] INFO - PR 525 dependabot[bot] 'Bump postcss from 8.4.31 to 8.5.10'
2026-11-13 00:40:29,866 [ scc.merge] INFO - PR 524 dependabot[bot] 'Bump protocol-buffers-schema from 3.3.2 to 3.6.1'
2026-11-13 00:40:29,866 [ scc.merge] INFO - PR 523 dependabot[bot] 'Bump follow-redirects from 1.15.6 to 1.16.0'
2026-11-13 00:40:29,866 [ scc.merge] INFO - PR 522 dependabot[bot] 'Bump lodash from 4.17.21 to 4.18.1'
2026-11-13 00:40:29,866 [ scc.merge] INFO - PR 521 dependabot[bot] 'Bump brace-expansion from 1.1.11 to 1.1.13'
2026-11-13 00:40:29,866 [ scc.merge] INFO - PR 520 dependabot[bot] 'Bump node-forge from 1.3.1 to 1.4.0'
2026-11-13 00:40:29,866 [ scc.merge] INFO - PR 519 dependabot[bot] 'Bump picomatch from 2.3.1 to 2.3.2'
2026-11-13 00:40:29,866 [ scc.merge] INFO - PR 518 dependabot[bot] 'Bump ajv from 6.12.6 to 6.14.0'
2026-11-13 00:40:29,866 [ scc.merge] INFO - PR 514 Tom-TBT 'Fix where interpolate_pixels server config is read from'
2026-11-13 00:40:29,866 [ scc.merge] INFO - PR 513 jburel 'Bump Python version'
2026-11-13 00:40:29,866 [ scc.merge] INFO - PR 512 jburel 'Replace manual changelog by automated GH release step'
2026-11-13 00:40:29,866 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2026-11-13 00:40:29,866 [ scc.merge] INFO - PR 517 will-moore 'Fix roi link permissions'
2026-11-13 00:40:29,866 [ scc.merge] INFO - PR 516 dependabot[bot] 'Bump socket.io-parser from 4.2.4 to 4.2.6'
2026-11-13 00:40:29,866 [ scc.merge] INFO - PR 510 joshmoore 'Re-enable omero-test-infra'
2026-11-13 00:40:29,866 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-11-13 00:40:29,866 [ scc.merge] INFO
2026-11-13 00:40:29,866 [ scc.merge] INFO Merged PRs:
2026-11-13 00:40:29,866 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2026-11-13 00:40:29,866 [ scc.merge] INFO - PR 587 will-moore 'Roi columns add remove'
2026-11-13 00:40:29,866 [ scc.merge] INFO
2026-11-13 00:40:29,866 [ scc.merge] INFO Conflicting PRs (not included):
2026-11-13 00:40:29,866 [ scc.merge] INFO - PR 532 will-moore 'Zarr layers'
2026-11-13 00:40:29,866 [ scc.merge] INFO
2026-11-13 00:40:29,866 [ scc.merge] INFO Repository: ome/omero-mapr
2026-11-13 00:40:29,866 [ scc.merge] INFO Excluded PRs:
2026-11-13 00:40:29,866 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2026-11-13 00:40:29,866 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient' (exclude comment)
2026-11-13 00:40:29,866 [ scc.merge] INFO Already up to date.
2026-11-13 00:40:29,866 [ scc.merge] INFO
2026-11-13 00:40:29,866 [ scc.merge] INFO Merged PRs:
2026-11-13 00:40:29,866 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-11-13 00:40:29,866 [ scc.merge] INFO - PR 97 JoshuaFortriede 'BUG Fix: use HTML value to replace HTML'
2026-11-13 00:40:29,866 [ scc.merge] INFO - PR 98 JoshuaFortriede 'use namespace with keys'
2026-11-13 00:40:29,866 [ scc.merge] INFO
2026-11-13 00:40:29,866 [ scc.merge] INFO Conflicting PRs (not included):
2026-11-13 00:40:29,866 [ scc.merge] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-11-13 00:40:29,866 [ scc.merge] INFO
2026-11-13 00:40:29,866 [ scc.merge] INFO Repository: ome/omero-metadata
2026-11-13 00:40:29,866 [ scc.merge] INFO Updating 3cd120c..6a653e4
2026-11-13 00:40:29,866 [ scc.merge] INFO Previously merged:
2026-11-13 00:40:29,866 [ scc.merge] INFO - PR 95 sbesson 'Remove manual CHANGELOG in favor of automated GitHub releases'
2026-11-13 00:40:29,866 [ scc.merge] INFO - PR 94 sbesson 'Cap pandas to 2.x and clean up unused dependencies'
2026-11-13 00:40:29,866 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-11-13 00:40:29,866 [ scc.merge] INFO
2026-11-13 00:40:29,866 [ scc.merge] INFO Merged PRs:
2026-11-13 00:40:29,866 [ scc.merge] INFO - PR 92 dominikl 'add resolve_rois to projectwrapper'
2026-11-13 00:40:29,866 [ scc.merge] INFO
2026-11-13 00:40:29,867 [ scc.merge] INFO Conflicting PRs (not included):
2026-11-13 00:40:29,867 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2026-11-13 00:40:29,867 [ scc.merge] INFO
2026-11-13 00:40:29,867 [ scc.merge] INFO Repository: ome/omero-parade
2026-11-13 00:40:29,867 [ scc.merge] INFO Excluded PRs:
2026-11-13 00:40:29,867 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2026-11-13 00:40:29,867 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2026-11-13 00:40:29,867 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2026-11-13 00:40:29,867 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2026-11-13 00:40:29,867 [ scc.merge] INFO Already up to date.
2026-11-13 00:40:29,867 [ scc.merge] INFO
2026-11-13 00:40:29,867 [ scc.merge] INFO Merged PRs:
2026-11-13 00:40:29,867 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2026-11-13 00:40:29,867 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2026-11-13 00:40:29,867 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-11-13 00:40:29,867 [ scc.merge] INFO
2026-11-13 00:40:29,867 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2026-11-13 00:40:29,867 [ scc.merge] INFO Already up to date.
2026-11-13 00:40:29,867 [ scc.merge] INFO
2026-11-13 00:40:29,867 [ scc.merge] INFO Merged PRs:
2026-11-13 00:40:29,867 [ scc.merge] INFO - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-11-13 00:40:29,867 [ scc.merge] INFO
2026-11-13 00:40:29,867 [ scc.merge] INFO Repository: ome/omero-rois
2026-11-13 00:40:29,867 [ scc.merge] INFO Excluded PRs:
2026-11-13 00:40:29,867 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2026-11-13 00:40:29,867 [ scc.merge] INFO Updating bdfeb5e..fc9ff96
2026-11-13 00:40:29,867 [ scc.merge] INFO Previously merged:
2026-11-13 00:40:29,867 [ scc.merge] INFO - PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml'
2026-11-13 00:40:29,867 [ scc.merge] INFO - PR 35 will-moore 'Add roi to array functions'
2026-11-13 00:40:29,867 [ scc.merge] INFO
2026-11-13 00:40:29,867 [ scc.merge] INFO
2026-11-13 00:40:29,867 [ scc.merge] INFO Repository: ome/omero-signup
2026-11-13 00:40:29,867 [ scc.merge] INFO Updating be76813..5a64360
2026-11-13 00:40:29,867 [ scc.merge] INFO Previously merged:
2026-11-13 00:40:29,867 [ scc.merge] INFO - PR 24 pwalczysko 'Upgrade framework, pip, certifi, actions, fix typo'
2026-11-13 00:40:29,867 [ scc.merge] INFO - PR 23 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.14.3 in /.github/workflows'
2026-11-13 00:40:29,867 [ scc.merge] INFO
2026-11-13 00:40:29,867 [ scc.merge] INFO Conflicting PRs (not included):
2026-11-13 00:40:29,867 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2026-11-13 00:40:29,867 [ scc.merge] INFO
2026-11-13 00:40:29,867 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2026-11-13 00:40:29,867 [ scc.merge] INFO Excluded PRs:
2026-11-13 00:40:29,867 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2026-11-13 00:40:29,867 [ scc.merge] INFO Updating cda3ec6..c8a0015
2026-11-13 00:40:29,867 [ scc.merge] INFO Previously merged:
2026-11-13 00:40:29,867 [ scc.merge] INFO - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
2026-11-13 00:40:29,867 [ scc.merge] INFO - PR 82 jburel 'Upgrade python'
2026-11-13 00:40:29,867 [ scc.merge] INFO - PR 81 erickmartins 'add ulimits to omero-server container'
2026-11-13 00:40:29,867 [ scc.merge] INFO
2026-11-13 00:40:29,867 [ scc.merge] INFO Merged PRs:
2026-11-13 00:40:29,867 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker'
2026-11-13 00:40:29,867 [ scc.merge] INFO
2026-11-13 00:40:29,867 [ scc.merge] INFO Repository: ome/omero-upload
2026-11-13 00:40:29,867 [ scc.merge] INFO Already up to date.
2026-11-13 00:40:29,867 [ scc.merge] INFO
2026-11-13 00:40:29,867 [ scc.merge] INFO Merged PRs:
2026-11-13 00:40:29,867 [ scc.merge] INFO - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-11-13 00:40:29,867 [ scc.merge] INFO
2026-11-13 00:40:29,867 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2026-11-13 00:40:29,867 [ scc.merge] INFO Updating deab817..160d894
2026-11-13 00:40:29,867 [ scc.merge] INFO Previously merged:
2026-11-13 00:40:29,867 [ scc.merge] INFO - PR 20 jburel 'Build'
2026-11-13 00:40:29,867 [ scc.merge] INFO
2026-11-13 00:40:29,867 [ scc.merge] INFO Merged PRs:
2026-11-13 00:40:29,867 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-11-13 00:40:29,867 [ scc.merge] INFO
2026-11-13 00:40:29,867 [ scc.merge] INFO Repository: ome/omero-web-zarr
2026-11-13 00:40:29,867 [ scc.merge] INFO Excluded PRs:
2026-11-13 00:40:29,867 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2026-11-13 00:40:29,867 [ scc.merge] INFO Updating 8f3c313..4e1e685
2026-11-13 00:40:29,867 [ scc.merge] INFO Previously merged:
2026-11-13 00:40:29,868 [ scc.merge] INFO - PR 23 lubianat 'Fix mix of .rst and .md on README'
2026-11-13 00:40:29,868 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2026-11-13 00:40:29,868 [ scc.merge] INFO
2026-11-13 00:40:29,868 [ scc.merge] INFO Merged PRs:
2026-11-13 00:40:29,868 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import'
2026-11-13 00:40:29,868 [ scc.merge] INFO
2026-11-13 00:40:29,868 [ scc.merge] INFO Conflicting PRs (not included):
2026-11-13 00:40:29,868 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2026-11-13 00:40:29,868 [ scc.merge] INFO
2026-11-13 00:40:29,868 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2026-11-13 00:40:29,868 [ scc.merge] INFO Already up to date.
2026-11-13 00:40:29,868 [ scc.merge] INFO
2026-11-13 00:40:29,868 [ scc.merge] INFO Merged PRs:
2026-11-13 00:40:29,868 [ scc.merge] INFO - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-11-13 00:40:29,868 [ scc.merge] INFO
2026-11-13 00:40:29,868 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2026-11-13 00:40:29,868 [ scc.merge] INFO Already up to date.
2026-11-13 00:40:29,868 [ scc.merge] INFO
2026-11-13 00:40:29,868 [ scc.merge] INFO Merged PRs:
2026-11-13 00:40:29,868 [ scc.merge] INFO - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-11-13 00:40:29,868 [ scc.merge] INFO
2026-11-13 00:40:29,868 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2026-11-13 00:40:29,868 [ scc.merge] INFO Already up to date.
2026-11-13 00:40:29,868 [ scc.merge] INFO
2026-11-13 00:40:29,868 [ scc.merge] INFO
2026-11-13 00:40:29,868 [ scc.merge] INFO Repository: ome/scripts
2026-11-13 00:40:29,868 [ scc.merge] INFO Updating 4b4c755..636540e
2026-11-13 00:40:29,868 [ scc.merge] INFO Previously merged:
2026-11-13 00:40:29,868 [ scc.merge] INFO - PR 235 will-moore 'Batch roi export tags'
2026-11-13 00:40:29,868 [ scc.merge] INFO - PR 231 jburel 'Create Release '
2026-11-13 00:40:29,868 [ scc.merge] INFO - PR 229 Rdornier 'Adding support for custom user label'
2026-11-13 00:40:29,868 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2026-11-13 00:40:29,868 [ scc.merge] INFO - PR 230 Rdornier 'Import from csv fix'
2026-11-13 00:40:29,868 [ scc.merge] INFO - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
2026-11-13 00:40:29,868 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2026-11-13 00:40:29,868 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2026-11-13 00:40:29,868 [ scc.merge] INFO
2026-11-13 00:40:29,868 [ scc.merge] INFO Merged PRs:
2026-11-13 00:40:29,868 [ scc.merge] INFO - PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`'
2026-11-13 00:40:29,868 [ scc.merge] INFO - PR 236 will-moore 'Rename text column to shape_text to be more explicit'
2026-11-13 00:40:29,868 [ scc.merge] INFO
2026-11-13 00:40:29,868 [ scc.merge] DEBUG Cleaning remote branches created for merging
2026-11-13 00:40:29,868 [ scc.git] DEBUG Calling 'git remote'
2026-11-13 00:40:29,930 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/figure
2026-11-13 00:40:29,930 [ scc.git] DEBUG Calling 'git remote'
2026-11-13 00:40:29,943 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-13 00:40:29,943 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2026-11-13 00:40:29,943 [ scc.git] DEBUG Calling 'git remote'
2026-11-13 00:40:29,955 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-13 00:40:29,955 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2026-11-13 00:40:29,955 [ scc.git] DEBUG Calling 'git remote'
2026-11-13 00:40:29,967 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-13 00:40:29,967 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2026-11-13 00:40:29,967 [ scc.git] DEBUG Calling 'git remote'
2026-11-13 00:40:29,981 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-13 00:40:29,981 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2026-11-13 00:40:29,981 [ scc.git] DEBUG Calling 'git remote'
2026-11-13 00:40:29,993 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-13 00:40:29,993 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2026-11-13 00:40:29,993 [ scc.git] DEBUG Calling 'git remote'
2026-11-13 00:40:30,006 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-13 00:40:30,006 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2026-11-13 00:40:30,006 [ scc.git] DEBUG Calling 'git remote'
2026-11-13 00:40:30,018 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-13 00:40:30,018 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2026-11-13 00:40:30,019 [ scc.git] DEBUG Calling 'git remote'
2026-11-13 00:40:30,031 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-13 00:40:30,031 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2026-11-13 00:40:30,031 [ scc.git] DEBUG Calling 'git remote'
2026-11-13 00:40:30,046 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-13 00:40:30,046 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2026-11-13 00:40:30,046 [ scc.git] DEBUG Calling 'git remote'
2026-11-13 00:40:30,061 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-13 00:40:30,061 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2026-11-13 00:40:30,061 [ scc.git] DEBUG Calling 'git remote'
2026-11-13 00:40:30,073 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-13 00:40:30,073 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2026-11-13 00:40:30,073 [ scc.git] DEBUG Calling 'git remote'
2026-11-13 00:40:30,085 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-13 00:40:30,085 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2026-11-13 00:40:30,085 [ scc.git] DEBUG Calling 'git remote'
2026-11-13 00:40:30,097 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-13 00:40:30,097 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2026-11-13 00:40:30,097 [ scc.git] DEBUG Calling 'git remote'
2026-11-13 00:40:30,110 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-13 00:40:30,110 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2026-11-13 00:40:30,110 [ scc.git] DEBUG Calling 'git remote'
2026-11-13 00:40:30,125 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-13 00:40:30,125 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2026-11-13 00:40:30,125 [ scc.git] DEBUG Calling 'git remote'
2026-11-13 00:40:30,143 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-13 00:40:30,143 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2026-11-13 00:40:30,143 [ scc.git] DEBUG Calling 'git remote'
2026-11-13 00:40:30,155 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-13 00:40:30,155 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2026-11-13 00:40:30,155 [ scc.git] DEBUG Calling 'git remote'
2026-11-13 00:40:30,167 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-13 00:40:30,167 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-11-13 00:40:30,167 [ scc.git] DEBUG Calling 'git remote'
2026-11-13 00:40:30,181 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-13 00:40:30,181 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-11-13 00:40:30,181 [ scc.git] DEBUG Calling 'git remote'
2026-11-13 00:40:30,195 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-13 00:40:30,195 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-11-13 00:40:30,195 [ scc.git] DEBUG Calling 'git remote'
2026-11-13 00:40:30,207 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-13 00:40:30,207 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-11-13 00:40:30,207 [ scc.git] DEBUG Calling 'git remote'
2026-11-13 00:40:30,219 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-11-13 00:40:30,219 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-11-13 00:40:30,219 [ scc.git] DEBUG Calling 'git remote'
2026-11-13 00:40:30,234 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/figure/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/figure/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
warnings.warn(msg)
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
(Affected: omero-cli-duplicate).
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
!!
********************************************************************************
Please consider removing the following classifiers in favor of a SPDX license expression:
License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+)
See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
********************************************************************************
!!
self._finalize_license_expression()
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
warnings.warn(msg)
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
(Affected: omero-cli-duplicate).
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
!!
********************************************************************************
Please consider removing the following classifiers in favor of a SPDX license expression:
License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+)
See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
********************************************************************************
!!
self._finalize_license_expression()
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
warnings.warn(msg)
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
(Affected: omero-cli-render).
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
!!
********************************************************************************
Please consider removing the following classifiers in favor of a SPDX license expression:
License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+)
See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
********************************************************************************
!!
self._finalize_license_expression()
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
warnings.warn(msg)
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
(Affected: omero-cli-render).
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
!!
********************************************************************************
Please consider removing the following classifiers in favor of a SPDX license expression:
License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+)
See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
********************************************************************************
!!
self._finalize_license_expression()
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!
********************************************************************************
Requirements should be satisfied by a PEP 517 installer.
If you are using pip, you can try `pip install --use-pep517`.
********************************************************************************
!!
dist.fetch_build_eggs(dist.setup_requires)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
warnings.warn(msg)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
!!
********************************************************************************
Please consider removing the following classifiers in favor of a SPDX license expression:
License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+)
See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
********************************************************************************
!!
self._finalize_license_expression()
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!
********************************************************************************
Requirements should be satisfied by a PEP 517 installer.
If you are using pip, you can try `pip install --use-pep517`.
********************************************************************************
!!
dist.fetch_build_eggs(dist.setup_requires)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
warnings.warn(msg)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
!!
********************************************************************************
Please consider removing the following classifiers in favor of a SPDX license expression:
License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+)
See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
********************************************************************************
!!
self._finalize_license_expression()
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
warnings.warn(msg)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
warnings.warn(msg)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:334: InformationOnly: Normalizing '0.4.2dev0' to '0.4.2.dev0'
self.metadata.version = self._normalize_version(self.metadata.version)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
(Affected: omero-fpbioimage).
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:334: InformationOnly: Normalizing '0.4.2dev0' to '0.4.2.dev0'
self.metadata.version = self._normalize_version(self.metadata.version)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
(Affected: omero-fpbioimage).
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
(Affected: omero-gallery).
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
(Affected: omero-gallery).
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self._enforce_underscore(opt, section)
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
warnings.warn(msg)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite'
warnings.warn(msg)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
(Affected: omero-mapr).
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
!!
********************************************************************************
Please consider removing the following classifiers in favor of a SPDX license expression:
License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+)
See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
********************************************************************************
!!
self._finalize_license_expression()
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
warnings.warn(msg)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite'
warnings.warn(msg)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
(Affected: omero-mapr).
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
!!
********************************************************************************
Please consider removing the following classifiers in favor of a SPDX license expression:
License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+)
See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
********************************************************************************
!!
self._finalize_license_expression()
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
warnings.warn(msg)
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
!!
********************************************************************************
Please consider removing the following classifiers in favor of a SPDX license expression:
License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+)
See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
********************************************************************************
!!
self._finalize_license_expression()
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
warnings.warn(msg)
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
!!
********************************************************************************
Please consider removing the following classifiers in favor of a SPDX license expression:
License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+)
See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
********************************************************************************
!!
self._finalize_license_expression()
/home/omero/workspace/OMERO-plugins-push/omero-rois/setup.py:24: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated.
!!
********************************************************************************
Please remove any references to `setuptools.command.test` in all supported versions of the affected package.
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
********************************************************************************
!!
from setuptools.command.test import test as test_command
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
warnings.warn(msg)
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
!!
********************************************************************************
Please consider removing the following classifiers in favor of a SPDX license expression:
License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+)
See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
********************************************************************************
!!
self._finalize_license_expression()
/home/omero/workspace/OMERO-plugins-push/omero-rois/setup.py:24: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated.
!!
********************************************************************************
Please remove any references to `setuptools.command.test` in all supported versions of the affected package.
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
********************************************************************************
!!
from setuptools.command.test import test as test_command
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
warnings.warn(msg)
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
!!
********************************************************************************
Please consider removing the following classifiers in favor of a SPDX license expression:
License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+)
See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
********************************************************************************
!!
self._finalize_license_expression()
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
(Affected: omero-signup).
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
(Affected: omero-signup).
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self._enforce_underscore(opt, section)
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
warnings.warn(msg)
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
!!
********************************************************************************
Please consider removing the following classifiers in favor of a SPDX license expression:
License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+)
See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
********************************************************************************
!!
self._finalize_license_expression()
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
warnings.warn(msg)
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
!!
********************************************************************************
Please consider removing the following classifiers in favor of a SPDX license expression:
License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+)
See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
********************************************************************************
!!
self._finalize_license_expression()
/home/omero/workspace/OMERO-plugins-push/omero-web-zarr/setup.py:5: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated.
!!
********************************************************************************
Please remove any references to `setuptools.command.test` in all supported versions of the affected package.
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
********************************************************************************
!!
from setuptools.command.test import test as test_command
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
warnings.warn(msg)
/home/omero/workspace/OMERO-plugins-push/omero-web-zarr/setup.py:5: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated.
!!
********************************************************************************
Please remove any references to `setuptools.command.test` in all supported versions of the affected package.
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
********************************************************************************
!!
from setuptools.command.test import test as test_command
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
warnings.warn(msg)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
(Affected: omero-weberror).
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
(Affected: omero-weberror).
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
(Affected: omero-webtest).
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self._enforce_underscore(opt, section)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
(Affected: omero-webtest).
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self._enforce_underscore(opt, section)
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
warnings.warn(msg)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
!!
********************************************************************************
Please consider removing the following classifiers in favor of a SPDX license expression:
License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+)
See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
********************************************************************************
!!
self._finalize_license_expression()
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
warnings.warn(msg)
/home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
!!
********************************************************************************
Please consider removing the following classifiers in favor of a SPDX license expression:
License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+)
See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
********************************************************************************
!!
self._finalize_license_expression()
grep: build.gradle: No such file or directory
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Updating omero-gateway from 5.10.0 to 5.11.1-SNAPSHOT
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Commit all component version changes
Entering 'figure'
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'figure'
HEAD detached from 3935875
nothing to commit, working tree clean
Entering 'minimal-omero-client'
[detached HEAD 593ba3b] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798cee
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD 935e62b] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2026-11-13 00:41:33,772 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2026-11-13 00:41:44,256 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2026-11-13 00:41:47,008 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-11-13 00:41:52,289 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-11-13 00:43:00,646 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
