Started by upstream project "Trigger" build number 150 originally caused by: Started by timer [Pipeline] Start of Pipeline [Pipeline] node Running on testintegration in /home/omero/workspace/OMERO-plugins-push [Pipeline] { [Pipeline] library Loading library recursiveMerge@pip-fix Attempting to resolve pip-fix from remote references... > git --version # timeout=10 > git --version # 'git version 2.47.3' > git ls-remote -- https://github.com/pwalczysko/jenkins-library-recursivemerge.git # timeout=10 Found match: refs/heads/pip-fix revision 7f97700354c96f09f8fc85e1e5b29d5f1bc56eef Selected Git installation does not exist. Using Default The recommended git tool is: NONE No credentials specified > git rev-parse --resolve-git-dir /var/jenkins_home/jobs/OMERO-plugins-push/workspace@libs/c2fa22709d21f4bfd9941790ca08af5c59149c9caf5c1a8a7319c933eafe9bde/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/pwalczysko/jenkins-library-recursivemerge.git # timeout=10 Fetching without tags Fetching upstream changes from https://github.com/pwalczysko/jenkins-library-recursivemerge.git > git --version # timeout=10 > git --version # 'git version 2.47.3' > git fetch --no-tags --force --progress -- https://github.com/pwalczysko/jenkins-library-recursivemerge.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Checking out Revision 7f97700354c96f09f8fc85e1e5b29d5f1bc56eef (pip-fix) > git config core.sparsecheckout # timeout=10 > git checkout -f 7f97700354c96f09f8fc85e1e5b29d5f1bc56eef # timeout=10 Commit message: "Fix pip-install" > git rev-list --no-walk 7f97700354c96f09f8fc85e1e5b29d5f1bc56eef # timeout=10 [Pipeline] checkout The recommended git tool is: NONE No credentials specified Fetching changes from the remote Git repository > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-plugins-push/.git # timeout=10 > git config remote.origin.url https://github.com/ome/omero-plugins.git # timeout=10 Fetching upstream changes from https://github.com/ome/omero-plugins.git > git --version # timeout=10 > git --version # 'git version 2.52.0' > git fetch --tags --force --progress -- https://github.com/ome/omero-plugins.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Checking out Revision 6c8647e73bf88ae05d5ec656f70844a60f6b6e6c (refs/remotes/origin/master) > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 6c8647e73bf88ae05d5ec656f70844a60f6b6e6c # timeout=10 Commit message: "Merge pull request #434 from will-moore/figure" > git rev-list --no-walk 6c8647e73bf88ae05d5ec656f70844a60f6b6e6c # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -fdx # timeout=10 > git submodule foreach --recursive git reset --hard # timeout=10 > git submodule foreach --recursive git clean -fdx # timeout=10 > git remote # timeout=10 > git submodule init # timeout=10 > git submodule sync # timeout=10 > git config --get remote.origin.url # timeout=10 > git submodule init # timeout=10 > git config -f .gitmodules --get-regexp ^submodule\.(.+)\.url # timeout=10 > git config --get submodule.omero-figure.url # timeout=10 > git config -f .gitmodules --get submodule.omero-figure.path # timeout=10 > git config --get submodule.minimal-omero-client.url # timeout=10 > git config -f .gitmodules --get submodule.minimal-omero-client.path # timeout=10 > git config --get submodule.scripts.url # timeout=10 > git config -f .gitmodules --get submodule.scripts.path # timeout=10 > git config --get submodule.omero-test-infra.url # timeout=10 > git config -f .gitmodules --get submodule.omero-test-infra.path # timeout=10 > git config --get submodule.omero-prometheus-tools.url # timeout=10 > git config -f .gitmodules --get submodule.omero-prometheus-tools.path # timeout=10 > git config --get submodule.omero-parade.url # timeout=10 > git config -f .gitmodules --get submodule.omero-parade.path # timeout=10 > git config --get submodule.omero-mapr.url # timeout=10 > git config -f .gitmodules --get submodule.omero-mapr.path # timeout=10 > git config --get submodule.omero-fpbioimage.url # timeout=10 > git config -f .gitmodules --get submodule.omero-fpbioimage.path # timeout=10 > git config --get submodule.omero-iviewer.url # timeout=10 > git config -f .gitmodules --get submodule.omero-iviewer.path # timeout=10 > git config --get submodule.omero-gallery.url # timeout=10 > git config -f .gitmodules --get submodule.omero-gallery.path # timeout=10 > git config --get submodule.rOMERO-gateway.url # timeout=10 > git config -f .gitmodules --get submodule.rOMERO-gateway.path # timeout=10 > git config --get submodule.omero-weberror.url # timeout=10 > git config -f .gitmodules --get submodule.omero-weberror.path # timeout=10 > git config --get submodule.omero-cli-render.url # timeout=10 > git config -f .gitmodules --get submodule.omero-cli-render.path # timeout=10 > git config --get submodule.omero-cli-duplicate.url # timeout=10 > git config -f .gitmodules --get submodule.omero-cli-duplicate.path # timeout=10 > git config --get submodule.omero-metadata.url # timeout=10 > git config -f .gitmodules --get submodule.omero-metadata.path # timeout=10 > git config --get submodule.omero-webtest.url # timeout=10 > git config -f .gitmodules --get submodule.omero-webtest.path # timeout=10 > git config --get submodule.omero-upload.url # timeout=10 > git config -f .gitmodules --get submodule.omero-upload.path # timeout=10 > git config --get submodule.omero-virtual-microscope.url # timeout=10 > git config -f .gitmodules --get submodule.omero-virtual-microscope.path # timeout=10 > git config --get submodule.omero-rois.url # timeout=10 > git config -f .gitmodules --get submodule.omero-rois.path # timeout=10 > git config --get submodule.omero-signup.url # timeout=10 > git config -f .gitmodules --get submodule.omero-signup.path # timeout=10 > git config --get submodule.omero-web-zarr.url # timeout=10 > git config -f .gitmodules --get submodule.omero-web-zarr.path # timeout=10 > git config --get submodule.omero-cli-zarr.url # timeout=10 > git config -f .gitmodules --get submodule.omero-cli-zarr.path # timeout=10 > git config --get submodule.figure.url # timeout=10 > git config -f .gitmodules --get submodule.figure.path # timeout=10 > git submodule update --init --recursive omero-figure # timeout=10 > git submodule update --init --recursive minimal-omero-client # timeout=10 > git submodule update --init --recursive scripts # timeout=10 > git submodule update --init --recursive omero-test-infra # timeout=10 > git submodule update --init --recursive omero-prometheus-tools # timeout=10 > git submodule update --init --recursive omero-parade # timeout=10 > git submodule update --init --recursive omero-mapr # timeout=10 > git submodule update --init --recursive omero-fpbioimage # timeout=10 > git submodule update --init --recursive omero-iviewer # timeout=10 > git submodule update --init --recursive omero-gallery # timeout=10 > git submodule update --init --recursive rOMERO-gateway # timeout=10 > git submodule update --init --recursive omero-weberror # timeout=10 > git submodule update --init --recursive omero-cli-render # timeout=10 > git submodule update --init --recursive omero-cli-duplicate # timeout=10 > git submodule update --init --recursive omero-metadata # timeout=10 > git submodule update --init --recursive omero-webtest # timeout=10 > git submodule update --init --recursive omero-upload # timeout=10 > git submodule update --init --recursive omero-virtual-microscope # timeout=10 > git submodule update --init --recursive omero-rois # timeout=10 > git submodule update --init --recursive omero-signup # timeout=10 [Pipeline] pwd [Pipeline] copyArtifacts Copied 1 artifact from "OMERO-build-push" build number 127 [Pipeline] sh + pushd build ~/workspace/OMERO-plugins-push/build ~/workspace/OMERO-plugins-push + tar -zxf - + curl -sfL https://github.com/ome/build-infra/archive/master.tar.gz > git submodule update --init --recursive omero-web-zarr # timeout=10 > git submodule update --init --recursive omero-cli-zarr # timeout=10 > git submodule update --init --recursive figure # timeout=10 + popd ~/workspace/OMERO-plugins-push + python3.11 -m venv build/venv + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-plugins-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-plugins-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(venv) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + python -m pip install 'pip @ https://files.pythonhosted.org/packages/3f/06/3e4420302363fbb71be3c7f35ce042f54bfca330e3e66b3a2e3c4cca579f/pip-26.2.2-py3-none-any.whl#sha256=fd7f4dfa8190e014013b9f08f3e973f4e4c26ffd179a204895533a7254813a70' Collecting pip@ https://files.pythonhosted.org/packages/3f/06/3e4420302363fbb71be3c7f35ce042f54bfca330e3e66b3a2e3c4cca579f/pip-26.2.2-py3-none-any.whl#sha256=fd7f4dfa8190e014013b9f08f3e973f4e4c26ffd179a204895533a7254813a70 Using cached pip-26.2.2-py3-none-any.whl (1.8 MB) Installing collected packages: pip Attempting uninstall: pip Found existing installation: pip 24.0 Uninstalling pip-24.0: Successfully uninstalled pip-24.0 Successfully installed pip-26.2.2 [notice] A new release of pip is available: 26.2.2 -> 26.3 [notice] To update, run: pip install --upgrade pip + python -m pip install --upgrade certifi Collecting certifi Using cached certifi-2026.10.23-py3-none-any.whl.metadata (2.5 kB) Using cached certifi-2026.10.23-py3-none-any.whl (135 kB) Installing collected packages: certifi Successfully installed certifi-2026.10.23 [notice] A new release of pip is available: 26.2.2 -> 26.3 [notice] To update, run: pip install --upgrade pip + python3.11 -m pip install scc Collecting scc Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB) Collecting PyGithub>=1.54 (from scc) Using cached pygithub-2.10.0-py3-none-any.whl.metadata (3.9 kB) Collecting PyYAML>=5.1 (from scc) Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB) Collecting future (from scc) Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) Collecting ruamel.yaml (from scc) Using cached ruamel_yaml-0.19.1-py3-none-any.whl.metadata (16 kB) Collecting ruamel.yaml.jinja2 (from scc) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB) Collecting six (from scc) Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) Collecting urllib3<2 (from scc) Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB) Collecting yaclifw<0.3,>=0.2.0 (from scc) Using cached yaclifw-0.2.0-py3-none-any.whl Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc) Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl.metadata (10.0 kB) Collecting requests>=2.14.0 (from PyGithub>=1.54->scc) Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB) Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached pyjwt-2.15.1-py3-none-any.whl.metadata (3.5 kB) Collecting typing-extensions>=4.5.0 (from PyGithub>=1.54->scc) Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB) Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cryptography-50.0.2-cp311-abi3-manylinux_2_34_x86_64.whl.metadata (4.4 kB) Collecting cffi>=2.0.0 (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cffi-2.1.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (2.5 kB) Collecting pycparser (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached pycparser-3.12-py3-none-any.whl.metadata (9.7 kB) Collecting charset_normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached charset_normalizer-3.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (46 kB) Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached idna-3.20-py3-none-any.whl.metadata (7.2 kB) Requirement already satisfied: certifi>=2023.5.7 in ./build/venv/lib/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2026.10.23) Using cached scc-0.20.0-py3-none-any.whl (48 kB) Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) Using cached pygithub-2.10.0-py3-none-any.whl (455 kB) Using cached pyjwt-2.15.1-py3-none-any.whl (33 kB) Using cached cryptography-50.0.2-cp311-abi3-manylinux_2_34_x86_64.whl (4.8 MB) Using cached cffi-2.1.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (217 kB) Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl (1.4 MB) Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) Using cached requests-2.34.2-py3-none-any.whl (73 kB) Using cached charset_normalizer-3.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (269 kB) Using cached idna-3.20-py3-none-any.whl (69 kB) Using cached typing_extensions-4.16.0-py3-none-any.whl (45 kB) Using cached future-1.0.0-py3-none-any.whl (491 kB) Using cached pycparser-3.12-py3-none-any.whl (62 kB) Using cached ruamel_yaml-0.19.1-py3-none-any.whl (118 kB) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB) Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) Installing collected packages: urllib3, typing-extensions, six, ruamel.yaml, PyYAML, pyjwt, pycparser, idna, future, charset_normalizer, yaclifw, ruamel.yaml.jinja2, requests, cffi, pynacl, cryptography, PyGithub, scc Successfully installed PyGithub-2.10.0 PyYAML-6.0.3 cffi-2.1.1 charset_normalizer-3.5.2 cryptography-50.0.2 future-1.0.0 idna-3.20 pycparser-3.12 pyjwt-2.15.1 pynacl-1.6.2 requests-2.34.2 ruamel.yaml-0.19.1 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.17.0 typing-extensions-4.16.0 urllib3-1.26.20 yaclifw-0.2.0 [notice] A new release of pip is available: 26.2.2 -> 26.3 [notice] To update, run: pip install --upgrade pip [Pipeline] sh + export BASE_REPO=omero-plugins.git + BASE_REPO=omero-plugins.git + export BASE_BRANCH=master + BASE_BRANCH=master + export VERSION_LOG=/home/omero/workspace/OMERO-plugins-push/build/version.tsv + VERSION_LOG=/home/omero/workspace/OMERO-plugins-push/build/version.tsv + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-plugins-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-plugins-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(venv) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + '[' merge_ci '!=' null ']' + export PUSH_BRANCH=merge_ci + PUSH_BRANCH=merge_ci + '[' null '!=' null ']' + export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment' + STATUS=success-only + MERGE_OPTIONS='-vvv --no-ask --reset --comment' + bash build/build-infra-master/recursive-merge Merge base repository (no submodule updates) 2026-11-15 00:16:59,470 [ scc.config] DEBUG Found github.token 2026-11-15 00:16:59,472 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2026-11-15 00:16:59,714 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:17:00,167 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:17:00,612 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2026-11-15 00:17:00,613 [ scc.gh] DEBUG 4807 remaining from 5000 (Reset at 01:11 2026-11-15 00:17:00,614 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-11-15 00:17:00,623 [ scc.git] DEBUG Check current status 2026-11-15 00:17:00,624 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-15 00:17:00,645 [ scc.git] DEBUG 6c8647e Merge pull request #434 from will-moore/figure 2026-11-15 00:17:00,646 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-15 00:17:00,871 [ scc.git] DEBUG 393587512d75ac33d3e750a46847ab074bfb435f figure (heads/master) 2026-11-15 00:17:00,957 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master) 2026-11-15 00:17:01,023 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2026-11-15 00:17:01,068 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c) 2026-11-15 00:17:01,120 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587) 2026-11-15 00:17:01,220 [ scc.git] DEBUG fb316a7ee6ca8aa5bc8dc55dd0acfa88fe3ca228 omero-figure (v7.2.0-1-gfb316a7e) 2026-11-15 00:17:01,269 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2026-11-15 00:17:01,324 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2026-11-15 00:17:01,486 [ scc.git] DEBUG b4102d46958a805cacff0c7ccceb05ccff746309 omero-iviewer (v0.15.0-1-gb4102d46) 2026-11-15 00:17:01,538 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2026-11-15 00:17:01,591 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c) 2026-11-15 00:17:01,666 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2026-11-15 00:17:01,701 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2026-11-15 00:17:01,736 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2026-11-15 00:17:01,785 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2026-11-15 00:17:01,820 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6) 2026-11-15 00:17:01,865 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2026-11-15 00:17:01,929 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2026-11-15 00:17:02,002 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313) 2026-11-15 00:17:02,077 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2026-11-15 00:17:02,122 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2026-11-15 00:17:02,156 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2026-11-15 00:17:02,196 [ scc.git] DEBUG 312afbed633613e1f728a1fe9eaac096e54318e0 scripts (v5.8.3-1-g312afbe) 2026-11-15 00:17:02,206 [ scc.config] DEBUG Found remote.origin.url 2026-11-15 00:17:02,560 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins HTTP/1.1" 200 None 2026-11-15 00:17:03,101 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-11-15 00:17:03,555 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-11-15 00:17:04,008 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-11-15 00:17:04,480 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-11-15 00:17:04,481 [ scc.git] DEBUG Resetting... 2026-11-15 00:17:04,481 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2026-11-15 00:17:04,760 [ scc.git] DEBUG HEAD is now at 6c8647e Merge pull request #434 from will-moore/figure 2026-11-15 00:17:04,761 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2026-11-15 00:17:05,847 [ scc.git] DEBUG Check current status 2026-11-15 00:17:05,847 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-15 00:17:05,865 [ scc.git] DEBUG 6c8647e Merge pull request #434 from will-moore/figure 2026-11-15 00:17:05,867 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-15 00:17:06,090 [ scc.git] DEBUG 393587512d75ac33d3e750a46847ab074bfb435f figure (heads/master) 2026-11-15 00:17:06,174 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master) 2026-11-15 00:17:06,209 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2026-11-15 00:17:06,244 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c) 2026-11-15 00:17:06,286 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587) 2026-11-15 00:17:06,342 [ scc.git] DEBUG fb316a7ee6ca8aa5bc8dc55dd0acfa88fe3ca228 omero-figure (v7.2.0-1-gfb316a7e) 2026-11-15 00:17:06,373 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2026-11-15 00:17:06,406 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2026-11-15 00:17:06,495 [ scc.git] DEBUG b4102d46958a805cacff0c7ccceb05ccff746309 omero-iviewer (v0.15.0-1-gb4102d46) 2026-11-15 00:17:06,531 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2026-11-15 00:17:06,571 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c) 2026-11-15 00:17:06,604 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2026-11-15 00:17:06,638 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2026-11-15 00:17:06,675 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2026-11-15 00:17:06,713 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2026-11-15 00:17:06,749 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6) 2026-11-15 00:17:06,781 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2026-11-15 00:17:06,814 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2026-11-15 00:17:06,852 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313) 2026-11-15 00:17:06,888 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2026-11-15 00:17:06,926 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2026-11-15 00:17:06,965 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2026-11-15 00:17:06,992 [ scc.git] DEBUG 312afbed633613e1f728a1fe9eaac096e54318e0 scripts (v5.8.3-1-g312afbe) 2026-11-15 00:17:06,993 [ scc.merge] INFO Merging Pull Request(s) based on master 2026-11-15 00:17:06,993 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2026-11-15 00:17:06,993 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2026-11-15 00:17:06,993 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2026-11-15 00:17:06,993 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2026-11-15 00:17:06,993 [ scc.repo] DEBUG ## PRs found: 2026-11-15 00:17:07,371 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/pulls HTTP/1.1" 200 None 2026-11-15 00:17:07,928 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/435 HTTP/1.1" 200 None 2026-11-15 00:17:07,929 [ scc.repo] DEBUG - PR 435 will-moore 'Add omero-biofilefinder as a submodule' 2026-11-15 00:17:08,462 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/433 HTTP/1.1" 200 None 2026-11-15 00:17:08,463 [ scc.repo] DEBUG # ... Include label: dependencies 2026-11-15 00:17:08,463 [ scc.repo] DEBUG - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2026-11-15 00:17:08,973 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/432 HTTP/1.1" 200 None 2026-11-15 00:17:08,974 [ scc.repo] DEBUG # ... Include label: dependencies 2026-11-15 00:17:08,974 [ scc.repo] DEBUG - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2026-11-15 00:17:09,498 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/429 HTTP/1.1" 200 None 2026-11-15 00:17:09,498 [ scc.repo] DEBUG # ... Include label: dependencies 2026-11-15 00:17:09,499 [ scc.repo] DEBUG - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2026-11-15 00:17:09,499 [ scc.repo] DEBUG ## Branches found: 2026-11-15 00:17:09,499 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:17:09,499 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:17:09,518 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-11-15 00:17:09,535 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-11-15 00:17:09,535 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-11-15 00:17:09,559 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-11-15 00:17:09,601 [ scc.git] DEBUG Already up to date. 2026-11-15 00:17:09,601 [ scc.git] DEBUG Calling 'git fetch origin pull/429/head' 2026-11-15 00:17:10,027 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-11-15 00:17:10,028 [ scc.git] DEBUG * branch refs/pull/429/head -> FETCH_HEAD 2026-11-15 00:17:10,059 [ scc.git] DEBUG Calling 'git fetch origin pull/432/head' 2026-11-15 00:17:10,493 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-11-15 00:17:10,494 [ scc.git] DEBUG * branch refs/pull/432/head -> FETCH_HEAD 2026-11-15 00:17:10,522 [ scc.git] DEBUG Calling 'git fetch origin pull/433/head' 2026-11-15 00:17:10,933 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-11-15 00:17:10,933 [ scc.git] DEBUG * branch refs/pull/433/head -> FETCH_HEAD 2026-11-15 00:17:10,960 [ scc.git] DEBUG Calling 'git fetch origin pull/435/head' 2026-11-15 00:17:11,452 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-11-15 00:17:11,452 [ scc.git] DEBUG * branch refs/pull/435/head -> FETCH_HEAD 2026-11-15 00:17:11,493 [ scc.git] DEBUG ## Unique users: [] 2026-11-15 00:17:11,494 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:17:11,494 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:17:11,504 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2026-11-15 00:17:11,532 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:17:11,542 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 429 (Bump scripts from `312afbe` to `4b4c755`) 3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2026-11-15 00:17:12,262 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-15 00:17:12,317 [ scc.git] DEBUG scripts | 2 +- 2026-11-15 00:17:12,317 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-11-15 00:17:12,520 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:17:12,520 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25bf90a85a7e0945e652f9d78050c8c4860acb51' 2026-11-15 00:17:12,553 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:17:12,563 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 432 (Bump omero-figure from `fb316a7` to `9cc36cd`) 25bf90a85a7e0945e652f9d78050c8c4860acb51' 2026-11-15 00:17:13,164 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-15 00:17:13,213 [ scc.git] DEBUG omero-figure | 2 +- 2026-11-15 00:17:13,213 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-11-15 00:17:13,402 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:17:13,403 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6fd5dc72efc90d7f749b332dba3f903414852d74' 2026-11-15 00:17:13,430 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:17:13,440 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 433 (Bump omero-iviewer from `b4102d4` to `7a798ce`) 6fd5dc72efc90d7f749b332dba3f903414852d74' 2026-11-15 00:17:14,076 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-15 00:17:14,132 [ scc.git] DEBUG omero-iviewer | 2 +- 2026-11-15 00:17:14,132 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-11-15 00:17:14,327 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:17:14,327 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d7acd12290d8278e426d4200ae8e4648ff9b95b3' 2026-11-15 00:17:14,360 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:17:14,371 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 435 (Add omero-biofilefinder as a submodule) d7acd12290d8278e426d4200ae8e4648ff9b95b3' 2026-11-15 00:17:15,047 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-15 00:17:15,103 [ scc.git] DEBUG .gitmodules | 3 +++ 2026-11-15 00:17:15,103 [ scc.git] DEBUG omero-biofilefinder | 1 + 2026-11-15 00:17:15,103 [ scc.git] DEBUG 2 files changed, 4 insertions(+) 2026-11-15 00:17:15,103 [ scc.git] DEBUG create mode 160000 omero-biofilefinder 2026-11-15 00:17:15,342 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:17:15,343 [ scc.git] DEBUG Calling 'git submodule update' 2026-11-15 00:17:16,235 [ scc.git] DEBUG Submodule path 'omero-figure': checked out '9cc36cde05bde4def7b62b07c2e9ae5f66712e96' 2026-11-15 00:17:17,317 [ scc.git] DEBUG Submodule path 'omero-iviewer': checked out '7a798ceeb3926d049d73788555fb63269a071052' 2026-11-15 00:17:17,627 [ scc.git] DEBUG Submodule path 'scripts': checked out '4b4c755af4ccf8a5e709548d1f8415fab48a4867' 2026-11-15 00:17:17,628 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:17:17,628 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:17:17,639 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-11-15 00:17:20,229 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f8b65ae2c10> has no local changes 2026-11-15 00:17:20,229 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone Repository: ome/omero-plugins Already up to date. Merged PRs: - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' - PR 435 will-moore 'Add omero-biofilefinder as a submodule' Generated by OMERO-plugins-push#127 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/127/)' 2026-11-15 00:17:21,412 [ scc.git] DEBUG [detached HEAD 0dace59] merge master -Dorg -Snone 2026-11-15 00:17:21,414 [ scc.merge] INFO Repository: ome/omero-plugins 2026-11-15 00:17:21,414 [ scc.merge] INFO Already up to date. 2026-11-15 00:17:21,414 [ scc.merge] INFO 2026-11-15 00:17:21,414 [ scc.merge] INFO Merged PRs: 2026-11-15 00:17:21,414 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2026-11-15 00:17:21,414 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2026-11-15 00:17:21,414 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2026-11-15 00:17:21,414 [ scc.merge] INFO - PR 435 will-moore 'Add omero-biofilefinder as a submodule' 2026-11-15 00:17:21,414 [ scc.merge] INFO 2026-11-15 00:17:21,414 [ scc.merge] DEBUG Cleaning remote branches created for merging 2026-11-15 00:17:21,414 [ scc.git] DEBUG Calling 'git remote' Synchronizing submodule url for 'figure' Synchronizing submodule url for 'minimal-omero-client' Synchronizing submodule url for 'omero-cli-duplicate' Synchronizing submodule url for 'omero-cli-render' Synchronizing submodule url for 'omero-cli-zarr' Synchronizing submodule url for 'omero-figure' Synchronizing submodule url for 'omero-fpbioimage' Synchronizing submodule url for 'omero-gallery' Synchronizing submodule url for 'omero-iviewer' Synchronizing submodule url for 'omero-mapr' Synchronizing submodule url for 'omero-metadata' Synchronizing submodule url for 'omero-parade' Synchronizing submodule url for 'omero-prometheus-tools' Synchronizing submodule url for 'omero-rois' Synchronizing submodule url for 'omero-signup' Synchronizing submodule url for 'omero-test-infra' Synchronizing submodule url for 'omero-upload' Synchronizing submodule url for 'omero-virtual-microscope' Synchronizing submodule url for 'omero-web-zarr' Synchronizing submodule url for 'omero-weberror' Synchronizing submodule url for 'omero-webtest' Synchronizing submodule url for 'rOMERO-gateway' Synchronizing submodule url for 'scripts' Submodule path 'figure': checked out '41fd98fa440d3ce7d520d806e5aa844e5895ff56' Submodule path 'omero-cli-render': checked out '68b73035cf2ab21ddd92022b80bda0966547b3c8' Submodule path 'omero-cli-zarr': checked out 'd5f88d80a2b1a3eacda64b591e1cfe6df4f51a82' Submodule path 'omero-figure': checked out '3195c3df4e7bf2507d9c942d5d8c9a8566498147' Submodule path 'omero-iviewer': checked out '106ca78705971983e6312360c46c4b41f4bf39d7' Submodule path 'omero-metadata': checked out '6a653e49e3589ccb463166506896639f6f0a5a2b' Submodule path 'omero-rois': checked out 'fc9ff96901ce7b92e3ba51327ba7ba64fff76959' Submodule path 'omero-signup': checked out '5a643604069047aa316f490d1a0b5adba78b079e' Submodule path 'omero-test-infra': checked out 'c8a0015b0ce72ee0a49e6968af33de10ea00bc77' Submodule path 'omero-virtual-microscope': checked out '160d894dfb61e69618903425b340c7888f3a934f' Submodule path 'omero-web-zarr': checked out '4e1e685dff22136abfd2626f6fd6eaf985aba368' Submodule path 'scripts': checked out '636540edd446910373ee2f91100356497e205722' Merge all submodules using repository configuration: base-branch: master submodules: scripts: base-branch: develop omero-web-zarr: base-branch: main 2026-11-15 00:17:42,946 [ scc.config] DEBUG Found github.token 2026-11-15 00:17:42,948 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2026-11-15 00:17:43,199 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:17:43,661 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:17:44,116 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2026-11-15 00:17:44,117 [ scc.gh] DEBUG 4791 remaining from 5000 (Reset at 01:11 2026-11-15 00:17:44,118 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-11-15 00:17:44,127 [ scc.git] DEBUG Check current status 2026-11-15 00:17:44,127 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-15 00:17:44,146 [ scc.git] DEBUG 0dace59 merge master -Dorg -Snone 2026-11-15 00:17:44,146 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-15 00:17:44,371 [ scc.git] DEBUG +41fd98fa440d3ce7d520d806e5aa844e5895ff56 figure (remotes/origin/HEAD) 2026-11-15 00:17:44,461 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master) 2026-11-15 00:17:44,461 [ scc.git] DEBUG -a686ad88b3f5e2a1f94b1e1eb765138a8dfdf555 omero-biofilefinder 2026-11-15 00:17:44,497 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2026-11-15 00:17:44,533 [ scc.git] DEBUG +68b73035cf2ab21ddd92022b80bda0966547b3c8 omero-cli-render (v0.8.1-28-g68b7303) 2026-11-15 00:17:44,583 [ scc.git] DEBUG +d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82 omero-cli-zarr (v0.9.0-1-gd5f88d8) 2026-11-15 00:17:44,658 [ scc.git] DEBUG +3195c3df4e7bf2507d9c942d5d8c9a8566498147 omero-figure (v8.0.1-1-g3195c3df) 2026-11-15 00:17:44,694 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2026-11-15 00:17:44,728 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2026-11-15 00:17:44,818 [ scc.git] DEBUG +106ca78705971983e6312360c46c4b41f4bf39d7 omero-iviewer (v0.20.0-1-g106ca787) 2026-11-15 00:17:44,857 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2026-11-15 00:17:44,903 [ scc.git] DEBUG +6a653e49e3589ccb463166506896639f6f0a5a2b omero-metadata (v0.14.0-2-g6a653e4) 2026-11-15 00:17:44,937 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2026-11-15 00:17:44,971 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2026-11-15 00:17:45,011 [ scc.git] DEBUG +fc9ff96901ce7b92e3ba51327ba7ba64fff76959 omero-rois (v0.4.1-1-gfc9ff96) 2026-11-15 00:17:45,056 [ scc.git] DEBUG +5a643604069047aa316f490d1a0b5adba78b079e omero-signup (v0.3.3-12-g5a64360) 2026-11-15 00:17:45,090 [ scc.git] DEBUG +c8a0015b0ce72ee0a49e6968af33de10ea00bc77 omero-test-infra (v0.6.3-67-gc8a0015) 2026-11-15 00:17:45,126 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2026-11-15 00:17:45,160 [ scc.git] DEBUG +160d894dfb61e69618903425b340c7888f3a934f omero-virtual-microscope (v1.1.1-12-g160d894) 2026-11-15 00:17:45,193 [ scc.git] DEBUG +4e1e685dff22136abfd2626f6fd6eaf985aba368 omero-web-zarr (v0.1.1-13-g4e1e685) 2026-11-15 00:17:45,225 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2026-11-15 00:17:45,255 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2026-11-15 00:17:45,283 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2026-11-15 00:17:45,321 [ scc.git] DEBUG +636540edd446910373ee2f91100356497e205722 scripts (v5.10.0-14-g636540e) 2026-11-15 00:17:45,333 [ scc.config] DEBUG Found remote.origin.url 2026-11-15 00:17:45,333 [ scc.git] DEBUG Reading repository configuration from repositories.yml 2026-11-15 00:17:45,335 [ scc.git] DEBUG Repository configuration: base-branch: master submodules: omero-web-zarr: base-branch: main scripts: base-branch: develop 2026-11-15 00:17:45,675 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins HTTP/1.1" 200 None 2026-11-15 00:17:46,182 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-11-15 00:17:46,647 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-11-15 00:17:47,122 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-11-15 00:17:47,626 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-11-15 00:17:47,628 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-15 00:17:47,811 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/figure 2026-11-15 00:17:47,811 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-11-15 00:17:47,823 [ scc.git] DEBUG Check current status 2026-11-15 00:17:47,823 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-15 00:17:47,848 [ scc.git] DEBUG 41fd98f Merge pull request #26 from will-moore/remove_python_script 2026-11-15 00:17:47,849 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-15 00:17:47,963 [ scc.config] DEBUG Found remote.origin.url 2026-11-15 00:17:48,273 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure HTTP/1.1" 200 None 2026-11-15 00:17:48,782 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-11-15 00:17:49,232 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-11-15 00:17:49,714 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-11-15 00:17:50,163 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-11-15 00:17:50,164 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-15 00:17:50,266 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:17:50,266 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client 2026-11-15 00:17:50,266 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-11-15 00:17:50,277 [ scc.git] DEBUG Check current status 2026-11-15 00:17:50,277 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-15 00:17:50,294 [ scc.git] DEBUG ca8c2ea Merge pull request #67 from jburel/gateway_5_10_0 2026-11-15 00:17:50,296 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-15 00:17:50,405 [ scc.config] DEBUG Found remote.origin.url 2026-11-15 00:17:50,728 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/minimal-omero-client HTTP/1.1" 200 None 2026-11-15 00:17:51,229 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-11-15 00:17:51,756 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-11-15 00:17:52,235 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-11-15 00:17:52,696 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-11-15 00:17:52,698 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-15 00:17:52,808 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:17:52,809 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate 2026-11-15 00:17:52,809 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-11-15 00:17:52,820 [ scc.git] DEBUG Check current status 2026-11-15 00:17:52,820 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-15 00:17:52,837 [ scc.git] DEBUG 4777ef8 Merge pull request #27 from jburel/build 2026-11-15 00:17:52,838 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-15 00:17:52,966 [ scc.config] DEBUG Found remote.origin.url 2026-11-15 00:17:53,287 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate HTTP/1.1" 200 None 2026-11-15 00:17:53,839 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-11-15 00:17:54,304 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-11-15 00:17:54,765 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-11-15 00:17:55,201 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-11-15 00:17:55,219 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-15 00:17:55,329 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:17:55,330 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render 2026-11-15 00:17:55,330 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-11-15 00:17:55,342 [ scc.git] DEBUG Check current status 2026-11-15 00:17:55,342 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-15 00:17:55,357 [ scc.git] DEBUG 68b7303 Merge pull request #74 from jburel/changelog2ghrelease 2026-11-15 00:17:55,358 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-15 00:17:55,471 [ scc.config] DEBUG Found remote.origin.url 2026-11-15 00:17:55,769 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render HTTP/1.1" 200 None 2026-11-15 00:17:56,272 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-11-15 00:17:56,744 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-11-15 00:17:57,222 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-11-15 00:17:57,684 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-11-15 00:17:57,685 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-15 00:17:57,798 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:17:57,798 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr 2026-11-15 00:17:57,799 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-11-15 00:17:57,811 [ scc.git] DEBUG Check current status 2026-11-15 00:17:57,811 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-15 00:17:57,833 [ scc.git] DEBUG d5f88d8 Bump version: 0.9.0 → 0.9.1.dev0 2026-11-15 00:17:57,833 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-15 00:17:57,948 [ scc.config] DEBUG Found remote.origin.url 2026-11-15 00:17:58,269 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr HTTP/1.1" 200 None 2026-11-15 00:17:58,770 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-11-15 00:17:59,236 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-11-15 00:17:59,901 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-11-15 00:18:00,349 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-11-15 00:18:00,351 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-15 00:18:00,465 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:18:00,466 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure 2026-11-15 00:18:00,466 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-11-15 00:18:00,492 [ scc.git] DEBUG Check current status 2026-11-15 00:18:00,492 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-15 00:18:00,524 [ scc.git] DEBUG 3195c3df Bump version: 8.0.1 → 8.0.2.dev0 2026-11-15 00:18:00,529 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-15 00:18:00,661 [ scc.config] DEBUG Found remote.origin.url 2026-11-15 00:18:00,963 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure HTTP/1.1" 200 None 2026-11-15 00:18:01,466 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-11-15 00:18:01,920 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-11-15 00:18:02,366 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-11-15 00:18:02,812 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-11-15 00:18:02,813 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-15 00:18:02,916 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:18:02,917 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage 2026-11-15 00:18:02,917 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-11-15 00:18:02,928 [ scc.git] DEBUG Check current status 2026-11-15 00:18:02,928 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-15 00:18:02,947 [ scc.git] DEBUG 3b6c05a Merge pull request #30 from jburel/build 2026-11-15 00:18:02,948 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-15 00:18:03,066 [ scc.config] DEBUG Found remote.origin.url 2026-11-15 00:18:03,378 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage HTTP/1.1" 200 None 2026-11-15 00:18:03,913 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-11-15 00:18:04,362 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-11-15 00:18:04,825 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-11-15 00:18:05,269 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-11-15 00:18:05,271 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-15 00:18:05,382 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:18:05,383 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery 2026-11-15 00:18:05,383 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-11-15 00:18:05,396 [ scc.git] DEBUG Check current status 2026-11-15 00:18:05,396 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-15 00:18:05,414 [ scc.git] DEBUG 2a621da Merge pull request #112 from jburel/build 2026-11-15 00:18:05,415 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-15 00:18:05,530 [ scc.config] DEBUG Found remote.origin.url 2026-11-15 00:18:05,808 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery HTTP/1.1" 200 None 2026-11-15 00:18:06,316 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-11-15 00:18:06,813 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-11-15 00:18:07,282 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-11-15 00:18:07,736 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-11-15 00:18:07,737 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-15 00:18:07,847 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:18:07,848 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer 2026-11-15 00:18:07,849 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-11-15 00:18:07,864 [ scc.git] DEBUG Check current status 2026-11-15 00:18:07,864 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-15 00:18:07,896 [ scc.git] DEBUG 106ca787 add dev 2026-11-15 00:18:07,900 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-15 00:18:08,016 [ scc.config] DEBUG Found remote.origin.url 2026-11-15 00:18:08,319 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer HTTP/1.1" 200 None 2026-11-15 00:18:08,854 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-11-15 00:18:09,327 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-11-15 00:18:09,813 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-11-15 00:18:10,276 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-11-15 00:18:10,277 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-15 00:18:10,397 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:18:10,398 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr 2026-11-15 00:18:10,398 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-11-15 00:18:10,413 [ scc.git] DEBUG Check current status 2026-11-15 00:18:10,413 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-15 00:18:10,433 [ scc.git] DEBUG 0a557da Bump version: 0.5.3 → 0.5.4.dev0 2026-11-15 00:18:10,434 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-15 00:18:10,548 [ scc.config] DEBUG Found remote.origin.url 2026-11-15 00:18:10,896 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr HTTP/1.1" 200 None 2026-11-15 00:18:11,410 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-11-15 00:18:11,870 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-11-15 00:18:12,343 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-11-15 00:18:12,808 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-11-15 00:18:12,809 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-15 00:18:12,912 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:18:12,913 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata 2026-11-15 00:18:12,914 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-11-15 00:18:12,926 [ scc.git] DEBUG Check current status 2026-11-15 00:18:12,926 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-15 00:18:12,946 [ scc.git] DEBUG 6a653e4 Fix workflow permission indentation 2026-11-15 00:18:12,950 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-15 00:18:13,060 [ scc.config] DEBUG Found remote.origin.url 2026-11-15 00:18:13,375 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata HTTP/1.1" 200 None 2026-11-15 00:18:13,891 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-11-15 00:18:14,345 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-11-15 00:18:14,795 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-11-15 00:18:15,260 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-11-15 00:18:15,261 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-15 00:18:15,373 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:18:15,374 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade 2026-11-15 00:18:15,374 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-11-15 00:18:15,389 [ scc.git] DEBUG Check current status 2026-11-15 00:18:15,389 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-15 00:18:15,410 [ scc.git] DEBUG fb5ae86 Merge pull request #133 from jburel/build 2026-11-15 00:18:15,411 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-15 00:18:15,544 [ scc.config] DEBUG Found remote.origin.url 2026-11-15 00:18:15,899 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade HTTP/1.1" 200 None 2026-11-15 00:18:16,425 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-11-15 00:18:16,875 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-11-15 00:18:17,328 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-11-15 00:18:17,788 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-11-15 00:18:17,790 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-15 00:18:17,901 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:18:17,902 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools 2026-11-15 00:18:17,902 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-11-15 00:18:17,915 [ scc.git] DEBUG Check current status 2026-11-15 00:18:17,915 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-15 00:18:17,938 [ scc.git] DEBUG eb47378 Merge pull request #15 from jburel/build 2026-11-15 00:18:17,940 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-15 00:18:18,064 [ scc.config] DEBUG Found remote.origin.url 2026-11-15 00:18:18,380 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools HTTP/1.1" 200 None 2026-11-15 00:18:18,910 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-11-15 00:18:19,379 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-11-15 00:18:19,832 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-11-15 00:18:20,275 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-11-15 00:18:20,277 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-15 00:18:20,382 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:18:20,382 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois 2026-11-15 00:18:20,383 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-11-15 00:18:20,394 [ scc.git] DEBUG Check current status 2026-11-15 00:18:20,394 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-15 00:18:20,410 [ scc.git] DEBUG fc9ff96 Bump version: 0.4.1 → 0.4.2.dev0 2026-11-15 00:18:20,411 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-15 00:18:20,527 [ scc.config] DEBUG Found remote.origin.url 2026-11-15 00:18:20,890 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois HTTP/1.1" 200 None 2026-11-15 00:18:21,406 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-11-15 00:18:21,872 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-11-15 00:18:22,330 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-11-15 00:18:22,774 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-11-15 00:18:22,775 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-15 00:18:22,893 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:18:22,894 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup 2026-11-15 00:18:22,895 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-11-15 00:18:22,909 [ scc.git] DEBUG Check current status 2026-11-15 00:18:22,909 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-15 00:18:22,932 [ scc.git] DEBUG 5a64360 Merge pull request #24 from pwalczysko/master 2026-11-15 00:18:22,932 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-15 00:18:23,057 [ scc.config] DEBUG Found remote.origin.url 2026-11-15 00:18:23,370 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup HTTP/1.1" 200 None 2026-11-15 00:18:23,882 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-11-15 00:18:24,343 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-11-15 00:18:24,785 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-11-15 00:18:25,228 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-11-15 00:18:25,230 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-15 00:18:25,329 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:18:25,330 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra 2026-11-15 00:18:25,330 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-11-15 00:18:25,341 [ scc.git] DEBUG Check current status 2026-11-15 00:18:25,342 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-15 00:18:25,357 [ scc.git] DEBUG c8a0015 Merge pull request #84 from joshmoore/fix-port-readme 2026-11-15 00:18:25,358 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-15 00:18:25,478 [ scc.config] DEBUG Found remote.origin.url 2026-11-15 00:18:25,671 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-test-infra HTTP/1.1" 301 198 Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 2026-11-15 00:18:25,673 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 2026-11-15 00:18:25,989 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/111908919 HTTP/1.1" 200 None 2026-11-15 00:18:26,480 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-11-15 00:18:26,934 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-11-15 00:18:27,409 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-11-15 00:18:27,852 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-11-15 00:18:27,854 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-15 00:18:27,962 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:18:27,963 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload 2026-11-15 00:18:27,963 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-11-15 00:18:27,977 [ scc.git] DEBUG Check current status 2026-11-15 00:18:27,978 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-15 00:18:27,997 [ scc.git] DEBUG 100f6ae Merge pull request #13 from jburel/build 2026-11-15 00:18:27,998 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-15 00:18:28,122 [ scc.config] DEBUG Found remote.origin.url 2026-11-15 00:18:28,531 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload HTTP/1.1" 200 None 2026-11-15 00:18:29,027 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-11-15 00:18:29,475 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-11-15 00:18:29,927 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-11-15 00:18:30,425 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-11-15 00:18:30,426 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-15 00:18:30,528 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:18:30,529 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope 2026-11-15 00:18:30,529 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-11-15 00:18:30,542 [ scc.git] DEBUG Check current status 2026-11-15 00:18:30,542 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-15 00:18:30,559 [ scc.git] DEBUG 160d894 Fix display of code 2026-11-15 00:18:30,560 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-15 00:18:30,696 [ scc.config] DEBUG Found remote.origin.url 2026-11-15 00:18:31,012 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope HTTP/1.1" 200 None 2026-11-15 00:18:31,558 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-11-15 00:18:32,024 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-11-15 00:18:32,483 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-11-15 00:18:32,976 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-11-15 00:18:32,977 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-15 00:18:33,086 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:18:33,086 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr 2026-11-15 00:18:33,087 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-11-15 00:18:33,099 [ scc.git] DEBUG Check current status 2026-11-15 00:18:33,100 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-15 00:18:33,117 [ scc.git] DEBUG 4e1e685 Merge pull request #23 from lubianat/patch-1 2026-11-15 00:18:33,118 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-15 00:18:33,240 [ scc.config] DEBUG Found remote.origin.url 2026-11-15 00:18:33,240 [ scc.git] DEBUG Repository configuration: base-branch: main 2026-11-15 00:18:33,520 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr HTTP/1.1" 200 None 2026-11-15 00:18:34,044 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-11-15 00:18:34,500 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-11-15 00:18:34,949 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-11-15 00:18:35,414 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-11-15 00:18:35,416 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-15 00:18:35,532 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:18:35,532 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror 2026-11-15 00:18:35,533 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-11-15 00:18:35,546 [ scc.git] DEBUG Check current status 2026-11-15 00:18:35,546 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-15 00:18:35,563 [ scc.git] DEBUG 70b01ed Merge pull request #24 from jburel/build 2026-11-15 00:18:35,564 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-15 00:18:35,686 [ scc.config] DEBUG Found remote.origin.url 2026-11-15 00:18:35,923 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-weberror HTTP/1.1" 301 197 Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 2026-11-15 00:18:35,925 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 2026-11-15 00:18:36,214 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/38373425 HTTP/1.1" 200 None 2026-11-15 00:18:36,723 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-11-15 00:18:37,163 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-11-15 00:18:37,620 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-11-15 00:18:38,073 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-11-15 00:18:38,074 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-15 00:18:38,180 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:18:38,180 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest 2026-11-15 00:18:38,181 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-11-15 00:18:38,192 [ scc.git] DEBUG Check current status 2026-11-15 00:18:38,192 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-15 00:18:38,208 [ scc.git] DEBUG 5bfef29 Merge pull request #36 from jburel/build 2026-11-15 00:18:38,209 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-15 00:18:38,323 [ scc.config] DEBUG Found remote.origin.url 2026-11-15 00:18:38,530 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-webtest HTTP/1.1" 301 197 Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 2026-11-15 00:18:38,531 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 2026-11-15 00:18:38,855 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/25970383 HTTP/1.1" 200 None 2026-11-15 00:18:39,378 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-11-15 00:18:39,832 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-11-15 00:18:40,333 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-11-15 00:18:40,816 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-11-15 00:18:40,817 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-15 00:18:40,930 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:18:40,931 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway 2026-11-15 00:18:40,932 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-11-15 00:18:40,944 [ scc.git] DEBUG Check current status 2026-11-15 00:18:40,945 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-15 00:18:40,965 [ scc.git] DEBUG 7b5d64d Merge pull request #106 from dominikl/add_examples_2 2026-11-15 00:18:40,966 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-15 00:18:41,083 [ scc.config] DEBUG Found remote.origin.url 2026-11-15 00:18:41,402 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway HTTP/1.1" 200 None 2026-11-15 00:18:41,917 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-11-15 00:18:42,389 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-11-15 00:18:42,851 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-11-15 00:18:43,317 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-11-15 00:18:43,320 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-15 00:18:43,433 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:18:43,434 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts 2026-11-15 00:18:43,434 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-11-15 00:18:43,449 [ scc.git] DEBUG Check current status 2026-11-15 00:18:43,449 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-15 00:18:43,473 [ scc.git] DEBUG 636540e Merge pull request #235 from will-moore/batch_roi_export_tags 2026-11-15 00:18:43,474 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-15 00:18:43,590 [ scc.config] DEBUG Found remote.origin.url 2026-11-15 00:18:43,590 [ scc.git] DEBUG Repository configuration: base-branch: develop 2026-11-15 00:18:43,795 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/scripts HTTP/1.1" 301 196 Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2026-11-15 00:18:43,796 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2026-11-15 00:18:44,099 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/4865545 HTTP/1.1" 200 None 2026-11-15 00:18:44,596 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-11-15 00:18:45,068 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-11-15 00:18:45,547 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-11-15 00:18:46,012 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-11-15 00:18:46,014 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-15 00:18:46,128 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:18:46,129 [ scc.git] DEBUG Resetting... 2026-11-15 00:18:46,129 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2026-11-15 00:18:46,420 [ scc.git] DEBUG HEAD is now at 0dace59 merge master -Dorg -Snone 2026-11-15 00:18:46,422 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2026-11-15 00:18:47,167 [ scc.git] DEBUG Submodule path 'figure': checked out '393587512d75ac33d3e750a46847ab074bfb435f' 2026-11-15 00:18:47,456 [ scc.git] DEBUG Submodule path 'omero-cli-render': checked out 'ce6e13cfea3157cab0d00fde40f6cc8158946264' 2026-11-15 00:18:47,891 [ scc.git] DEBUG Submodule path 'omero-cli-zarr': checked out '11d35873542022d9638ede115d0dfab4652f8e62' 2026-11-15 00:18:49,034 [ scc.git] DEBUG Submodule path 'omero-figure': checked out '9cc36cde05bde4def7b62b07c2e9ae5f66712e96' 2026-11-15 00:18:50,189 [ scc.git] DEBUG Submodule path 'omero-iviewer': checked out '7a798ceeb3926d049d73788555fb63269a071052' 2026-11-15 00:18:50,511 [ scc.git] DEBUG Submodule path 'omero-metadata': checked out '3cd120cf6f10f71421a4db91fa87baba865c7997' 2026-11-15 00:18:50,838 [ scc.git] DEBUG Submodule path 'omero-rois': checked out 'bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9' 2026-11-15 00:18:51,057 [ scc.git] DEBUG Submodule path 'omero-signup': checked out 'be76813540a02082196cac2ffee151e3f68cb71e' 2026-11-15 00:18:51,257 [ scc.git] DEBUG Submodule path 'omero-test-infra': checked out 'cda3ec65052d6933052c8683d080677c6c33dc73' 2026-11-15 00:18:51,493 [ scc.git] DEBUG Submodule path 'omero-virtual-microscope': checked out 'deab81790f403bef598915b89b5300258b44a743' 2026-11-15 00:18:51,683 [ scc.git] DEBUG Submodule path 'omero-web-zarr': checked out '8f3c31388de8a7c44f18a6f0e20ea41d35fae041' 2026-11-15 00:18:52,156 [ scc.git] DEBUG Submodule path 'scripts': checked out '4b4c755af4ccf8a5e709548d1f8415fab48a4867' 2026-11-15 00:18:52,177 [ scc.git] DEBUG Check current status 2026-11-15 00:18:52,177 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-15 00:18:52,195 [ scc.git] DEBUG 0dace59 merge master -Dorg -Snone 2026-11-15 00:18:52,195 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-15 00:18:52,404 [ scc.git] DEBUG 393587512d75ac33d3e750a46847ab074bfb435f figure (heads/master) 2026-11-15 00:18:52,475 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master) 2026-11-15 00:18:52,476 [ scc.git] DEBUG -a686ad88b3f5e2a1f94b1e1eb765138a8dfdf555 omero-biofilefinder 2026-11-15 00:18:52,505 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2026-11-15 00:18:52,540 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c) 2026-11-15 00:18:52,587 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587) 2026-11-15 00:18:52,652 [ scc.git] DEBUG 9cc36cde05bde4def7b62b07c2e9ae5f66712e96 omero-figure (v7.2.1-3-g9cc36cde) 2026-11-15 00:18:52,683 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2026-11-15 00:18:52,716 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2026-11-15 00:18:52,801 [ scc.git] DEBUG 7a798ceeb3926d049d73788555fb63269a071052 omero-iviewer (v0.16.0-14-g7a798cee) 2026-11-15 00:18:52,832 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2026-11-15 00:18:52,870 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c) 2026-11-15 00:18:52,902 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2026-11-15 00:18:52,933 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2026-11-15 00:18:52,965 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2026-11-15 00:18:52,999 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2026-11-15 00:18:53,032 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6) 2026-11-15 00:18:53,065 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2026-11-15 00:18:53,099 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2026-11-15 00:18:53,134 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313) 2026-11-15 00:18:53,168 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2026-11-15 00:18:53,206 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2026-11-15 00:18:53,240 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2026-11-15 00:18:53,263 [ scc.git] DEBUG 4b4c755af4ccf8a5e709548d1f8415fab48a4867 scripts (v5.9.0-1-g4b4c755) 2026-11-15 00:18:53,264 [ scc.merge] INFO Merging Pull Request(s) based on master 2026-11-15 00:18:53,264 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2026-11-15 00:18:53,264 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2026-11-15 00:18:53,264 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2026-11-15 00:18:53,264 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2026-11-15 00:18:53,264 [ scc.merge] INFO Excluding Pull Request(s) without successful status 2026-11-15 00:18:53,264 [ scc.repo] DEBUG ## PRs found: 2026-11-15 00:18:53,681 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/pulls HTTP/1.1" 200 None 2026-11-15 00:18:54,207 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/435 HTTP/1.1" 200 None 2026-11-15 00:18:54,798 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/d7acd12290d8278e426d4200ae8e4648ff9b95b3?page=1 HTTP/1.1" 200 None 2026-11-15 00:18:55,273 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/d7acd12290d8278e426d4200ae8e4648ff9b95b3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-15 00:18:55,742 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/d7acd12290d8278e426d4200ae8e4648ff9b95b3?page=1 HTTP/1.1" 200 None 2026-11-15 00:18:56,187 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/d7acd12290d8278e426d4200ae8e4648ff9b95b3?per_page=1 HTTP/1.1" 200 2 2026-11-15 00:18:56,188 [ scc.repo] DEBUG - PR 435 will-moore 'Add omero-biofilefinder as a submodule' 2026-11-15 00:18:56,722 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/433 HTTP/1.1" 200 None 2026-11-15 00:18:56,723 [ scc.repo] DEBUG # ... Include label: dependencies 2026-11-15 00:18:57,342 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74?page=1 HTTP/1.1" 200 None 2026-11-15 00:18:57,819 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-15 00:18:58,322 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74?page=1 HTTP/1.1" 200 None 2026-11-15 00:18:58,774 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/6fd5dc72efc90d7f749b332dba3f903414852d74?per_page=1 HTTP/1.1" 200 2 2026-11-15 00:18:58,775 [ scc.repo] DEBUG - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2026-11-15 00:18:59,288 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/432 HTTP/1.1" 200 None 2026-11-15 00:18:59,289 [ scc.repo] DEBUG # ... Include label: dependencies 2026-11-15 00:19:00,040 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51?page=1 HTTP/1.1" 200 None 2026-11-15 00:19:00,524 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-15 00:19:01,078 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51?page=1 HTTP/1.1" 200 None 2026-11-15 00:19:01,529 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/25bf90a85a7e0945e652f9d78050c8c4860acb51?per_page=1 HTTP/1.1" 200 2 2026-11-15 00:19:01,529 [ scc.repo] DEBUG - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2026-11-15 00:19:02,121 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/429 HTTP/1.1" 200 None 2026-11-15 00:19:02,122 [ scc.repo] DEBUG # ... Include label: dependencies 2026-11-15 00:19:02,764 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2?page=1 HTTP/1.1" 200 None 2026-11-15 00:19:03,235 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-15 00:19:03,742 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2?page=1 HTTP/1.1" 200 None 2026-11-15 00:19:04,200 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/3062fb487d55aef3602ecee795b63ccb73d1f8e2?per_page=1 HTTP/1.1" 200 2 2026-11-15 00:19:04,200 [ scc.repo] DEBUG - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2026-11-15 00:19:04,201 [ scc.repo] DEBUG ## Branches found: 2026-11-15 00:19:04,201 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:19:04,201 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:19:04,211 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-11-15 00:19:04,226 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-11-15 00:19:04,226 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-11-15 00:19:04,250 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-11-15 00:19:04,305 [ scc.git] DEBUG Already up to date. 2026-11-15 00:19:04,305 [ scc.git] DEBUG Calling 'git fetch origin pull/429/head' 2026-11-15 00:19:04,750 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-11-15 00:19:04,750 [ scc.git] DEBUG * branch refs/pull/429/head -> FETCH_HEAD 2026-11-15 00:19:04,776 [ scc.git] DEBUG Calling 'git fetch origin pull/432/head' 2026-11-15 00:19:05,176 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-11-15 00:19:05,176 [ scc.git] DEBUG * branch refs/pull/432/head -> FETCH_HEAD 2026-11-15 00:19:05,202 [ scc.git] DEBUG Calling 'git fetch origin pull/433/head' 2026-11-15 00:19:05,600 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-11-15 00:19:05,600 [ scc.git] DEBUG * branch refs/pull/433/head -> FETCH_HEAD 2026-11-15 00:19:05,628 [ scc.git] DEBUG Calling 'git fetch origin pull/435/head' 2026-11-15 00:19:06,041 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-11-15 00:19:06,041 [ scc.git] DEBUG * branch refs/pull/435/head -> FETCH_HEAD 2026-11-15 00:19:06,079 [ scc.git] DEBUG ## Unique users: [] 2026-11-15 00:19:06,079 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:19:06,079 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:19:06,088 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2026-11-15 00:19:06,115 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:19:06,123 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 429 (Bump scripts from `312afbe` to `4b4c755`) 3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2026-11-15 00:19:06,166 [ scc.git] DEBUG Already up to date. 2026-11-15 00:19:06,341 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:19:06,342 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25bf90a85a7e0945e652f9d78050c8c4860acb51' 2026-11-15 00:19:06,369 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:19:06,378 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 432 (Bump omero-figure from `fb316a7` to `9cc36cd`) 25bf90a85a7e0945e652f9d78050c8c4860acb51' 2026-11-15 00:19:06,421 [ scc.git] DEBUG Already up to date. 2026-11-15 00:19:06,768 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:19:06,769 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6fd5dc72efc90d7f749b332dba3f903414852d74' 2026-11-15 00:19:06,800 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:19:06,812 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 433 (Bump omero-iviewer from `b4102d4` to `7a798ce`) 6fd5dc72efc90d7f749b332dba3f903414852d74' 2026-11-15 00:19:06,862 [ scc.git] DEBUG Already up to date. 2026-11-15 00:19:07,204 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:19:07,204 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d7acd12290d8278e426d4200ae8e4648ff9b95b3' 2026-11-15 00:19:07,238 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:19:07,249 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 435 (Add omero-biofilefinder as a submodule) d7acd12290d8278e426d4200ae8e4648ff9b95b3' 2026-11-15 00:19:07,294 [ scc.git] DEBUG Already up to date. 2026-11-15 00:19:07,704 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:19:07,704 [ scc.git] DEBUG Calling 'git submodule update' 2026-11-15 00:19:08,434 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:19:08,434 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:19:08,444 [ scc.repo] DEBUG ## PRs found: 2026-11-15 00:19:08,812 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/pulls HTTP/1.1" 200 None 2026-11-15 00:19:09,333 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/30 HTTP/1.1" 200 None 2026-11-15 00:19:09,902 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/30/comments HTTP/1.1" 200 None 2026-11-15 00:19:10,530 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/7b316828909e365b9a7492c56187be32a6e0d7f8?page=1 HTTP/1.1" 200 None 2026-11-15 00:19:11,009 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/7b316828909e365b9a7492c56187be32a6e0d7f8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-15 00:19:11,491 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/7b316828909e365b9a7492c56187be32a6e0d7f8?page=1 HTTP/1.1" 200 None 2026-11-15 00:19:11,950 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/statuses/7b316828909e365b9a7492c56187be32a6e0d7f8?per_page=1 HTTP/1.1" 200 None 2026-11-15 00:19:12,438 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/7b316828909e365b9a7492c56187be32a6e0d7f8?page=1 HTTP/1.1" 200 None 2026-11-15 00:19:12,905 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/7b316828909e365b9a7492c56187be32a6e0d7f8/status HTTP/1.1" 200 None 2026-11-15 00:19:12,905 [ scc.repo] DEBUG - PR 30 will-moore 'License to BSD' 2026-11-15 00:19:13,422 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/21 HTTP/1.1" 200 None 2026-11-15 00:19:13,962 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/21/comments HTTP/1.1" 200 None 2026-11-15 00:19:13,963 [ scc.repo] DEBUG # ... Include label: include 2026-11-15 00:19:14,556 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/2ee7ef68e92851305e84f793e1301b6a97fc7200?page=1 HTTP/1.1" 200 None 2026-11-15 00:19:15,029 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/2ee7ef68e92851305e84f793e1301b6a97fc7200/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-15 00:19:15,517 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/2ee7ef68e92851305e84f793e1301b6a97fc7200?page=1 HTTP/1.1" 200 None 2026-11-15 00:19:15,982 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/statuses/2ee7ef68e92851305e84f793e1301b6a97fc7200?per_page=1 HTTP/1.1" 200 None 2026-11-15 00:19:16,476 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/2ee7ef68e92851305e84f793e1301b6a97fc7200?page=1 HTTP/1.1" 200 None 2026-11-15 00:19:16,955 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/2ee7ef68e92851305e84f793e1301b6a97fc7200/status HTTP/1.1" 200 None 2026-11-15 00:19:16,956 [ scc.repo] DEBUG - PR 21 tcompa 'Avoid request to `WEBGATEWAYINDEX + "open_with/` if `APP_SERVED_BY_OMERO = false`' 2026-11-15 00:19:17,427 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/12 HTTP/1.1" 200 None 2026-11-15 00:19:17,966 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/12/comments HTTP/1.1" 200 None 2026-11-15 00:19:18,463 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/9 HTTP/1.1" 200 None 2026-11-15 00:19:18,996 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/9/comments HTTP/1.1" 200 None 2026-11-15 00:19:18,998 [ scc.repo] DEBUG ## Branches found: 2026-11-15 00:19:18,998 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/figure 2026-11-15 00:19:18,999 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:19:18,999 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:19:19,012 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-11-15 00:19:19,027 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-11-15 00:19:19,027 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-11-15 00:19:19,211 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-11-15 00:19:19,942 [ scc.git] DEBUG Updating 3935875..41fd98f 2026-11-15 00:19:20,320 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/pulls/26 HTTP/1.1" 200 16933 2026-11-15 00:19:20,842 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/pulls/5 HTTP/1.1" 200 16143 2026-11-15 00:19:21,418 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/pulls/24 HTTP/1.1" 200 16693 2026-11-15 00:19:21,977 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/pulls/20 HTTP/1.1" 200 17267 2026-11-15 00:19:22,655 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/pulls/19 HTTP/1.1" 200 16495 2026-11-15 00:19:23,178 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/pulls/14 HTTP/1.1" 200 16531 2026-11-15 00:19:23,720 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/pulls/17 HTTP/1.1" 200 16256 2026-11-15 00:19:24,266 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/pulls/15 HTTP/1.1" 200 16506 2026-11-15 00:19:24,267 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head' 2026-11-15 00:19:24,849 [ scc.git] DEBUG From https://github.com/ome/figure 2026-11-15 00:19:24,849 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD 2026-11-15 00:19:24,873 [ scc.git] DEBUG Calling 'git fetch origin pull/30/head' 2026-11-15 00:19:25,393 [ scc.git] DEBUG From https://github.com/ome/figure 2026-11-15 00:19:25,393 [ scc.git] DEBUG * branch refs/pull/30/head -> FETCH_HEAD 2026-11-15 00:19:25,415 [ scc.git] DEBUG ## Unique users: [] 2026-11-15 00:19:25,415 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:19:25,415 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:19:25,426 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee7ef68e92851305e84f793e1301b6a97fc7200' 2026-11-15 00:19:25,499 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:19:25,510 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Avoid request to `WEBGATEWAYINDEX + "open_with/` if `APP_SERVED_BY_OMERO = false`) 2ee7ef68e92851305e84f793e1301b6a97fc7200' 2026-11-15 00:19:25,835 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-15 00:19:25,902 [ scc.git] DEBUG src/js/views/util.js | 24 +++++++++++++----------- 2026-11-15 00:19:25,903 [ scc.git] DEBUG 1 file changed, 13 insertions(+), 11 deletions(-) 2026-11-15 00:19:26,099 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:19:26,099 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...7b316828909e365b9a7492c56187be32a6e0d7f8' 2026-11-15 00:19:26,185 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:19:26,198 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 30 (License to BSD) 7b316828909e365b9a7492c56187be32a6e0d7f8' 2026-11-15 00:19:26,413 [ scc.git] DEBUG Auto-merging README.md 2026-11-15 00:19:26,483 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-15 00:19:26,542 [ scc.git] DEBUG LICENSE | 686 +++----------------------------------------------------------- 2026-11-15 00:19:26,542 [ scc.git] DEBUG README.md | 3 +- 2026-11-15 00:19:26,542 [ scc.git] DEBUG 2 files changed, 27 insertions(+), 662 deletions(-) 2026-11-15 00:19:26,776 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:19:26,776 [ scc.git] DEBUG Calling 'git submodule update' 2026-11-15 00:19:26,880 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:19:26,881 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:19:26,892 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-15 00:19:26,997 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-11-15 00:19:27,065 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f5ce9971710> has no local changes 2026-11-15 00:19:27,065 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/figure Excluded PRs: - PR 12 will-moore 'Browser based export' (exclude comment) - PR 9 will-moore 'Save omezarr collection' (stage: draft) Updating 3935875..41fd98f Previously merged: - PR 26 will-moore 'Remove python script' - PR 5 will-moore 'Add sample_figures/ngff_images_figure.json' - PR 24 Tom-TBT 'Label selection timeout & blur fix' - PR 20 will-moore 'Hide export dropdown unless omero' - PR 19 Rdornier 'Fix rectangle crop' - PR 14 will-moore 'App served by omero env' - PR 17 Rdornier 'Do not crop rotated panel at export' - PR 15 will-moore 'Replace navbar 'OMERO' with 'figure' and OME logo' Merged PRs: - PR 21 tcompa 'Avoid request to `WEBGATEWAYINDEX + "open_with/` if `APP_SERVED_BY_OMERO = false`' - PR 30 will-moore 'License to BSD' Generated by OMERO-plugins-push#127 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/127/)' 2026-11-15 00:19:27,224 [ scc.git] DEBUG [detached HEAD 454d1f5] merge master -Dorg -Ssuccess-only 2026-11-15 00:19:27,226 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:19:27,226 [ scc.repo] DEBUG ## PRs found: 2026-11-15 00:19:27,447 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/minimal-omero-client/pulls HTTP/1.1" 200 2 2026-11-15 00:19:27,447 [ scc.repo] DEBUG ## Branches found: 2026-11-15 00:19:27,447 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client 2026-11-15 00:19:27,447 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:19:27,447 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:19:27,461 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-11-15 00:19:27,476 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-11-15 00:19:27,476 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-11-15 00:19:27,493 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-11-15 00:19:27,541 [ scc.git] DEBUG Already up to date. 2026-11-15 00:19:27,541 [ scc.git] DEBUG ## Unique users: [] 2026-11-15 00:19:27,541 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:19:27,541 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:19:27,557 [ scc.git] DEBUG Calling 'git submodule update' 2026-11-15 00:19:27,664 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:19:27,664 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:19:27,677 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-15 00:19:27,770 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-11-15 00:19:27,813 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f5ce9bc5f90> has no local changes 2026-11-15 00:19:27,813 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/minimal-omero-client Already up to date. Generated by OMERO-plugins-push#127 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/127/)' 2026-11-15 00:19:27,944 [ scc.git] DEBUG [detached HEAD e814835] merge master -Dorg -Ssuccess-only 2026-11-15 00:19:27,946 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:19:27,946 [ scc.repo] DEBUG ## PRs found: 2026-11-15 00:19:28,328 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/pulls HTTP/1.1" 200 None 2026-11-15 00:19:28,949 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/29 HTTP/1.1" 200 None 2026-11-15 00:19:28,950 [ scc.repo] DEBUG # ... Include label: dependencies 2026-11-15 00:19:29,593 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4?page=1 HTTP/1.1" 200 None 2026-11-15 00:19:30,076 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-15 00:19:30,580 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4?page=1 HTTP/1.1" 200 None 2026-11-15 00:19:31,027 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/statuses/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4?per_page=1 HTTP/1.1" 200 2 2026-11-15 00:19:31,028 [ scc.repo] DEBUG - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-11-15 00:19:31,579 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/18 HTTP/1.1" 200 None 2026-11-15 00:19:32,085 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/18/comments HTTP/1.1" 200 None 2026-11-15 00:19:32,086 [ scc.repo] DEBUG ## Branches found: 2026-11-15 00:19:32,086 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate 2026-11-15 00:19:32,086 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:19:32,086 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:19:32,099 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-11-15 00:19:32,113 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-11-15 00:19:32,113 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-11-15 00:19:32,130 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-11-15 00:19:32,175 [ scc.git] DEBUG Already up to date. 2026-11-15 00:19:32,175 [ scc.git] DEBUG Calling 'git fetch origin pull/29/head' 2026-11-15 00:19:32,579 [ scc.git] DEBUG From https://github.com/ome/omero-cli-duplicate 2026-11-15 00:19:32,579 [ scc.git] DEBUG * branch refs/pull/29/head -> FETCH_HEAD 2026-11-15 00:19:32,599 [ scc.git] DEBUG ## Unique users: [] 2026-11-15 00:19:32,599 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:19:32,599 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:19:32,611 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4' 2026-11-15 00:19:32,629 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:19:32,642 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 29 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4' 2026-11-15 00:19:32,777 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-15 00:19:32,827 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-11-15 00:19:32,827 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-11-15 00:19:33,021 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:19:33,021 [ scc.git] DEBUG Calling 'git submodule update' 2026-11-15 00:19:33,125 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:19:33,125 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:19:33,135 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-15 00:19:33,231 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-11-15 00:19:33,281 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f5ce97c7a50> has no local changes 2026-11-15 00:19:33,281 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-cli-duplicate Excluded PRs: - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment) Already up to date. Merged PRs: - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#127 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/127/)' 2026-11-15 00:19:33,378 [ scc.git] DEBUG [detached HEAD 27bea14] merge master -Dorg -Ssuccess-only 2026-11-15 00:19:33,380 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:19:33,380 [ scc.repo] DEBUG ## PRs found: 2026-11-15 00:19:33,742 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls HTTP/1.1" 200 None 2026-11-15 00:19:34,274 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/59 HTTP/1.1" 200 None 2026-11-15 00:19:34,785 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/59/comments HTTP/1.1" 200 None 2026-11-15 00:19:35,388 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99?page=1 HTTP/1.1" 200 None 2026-11-15 00:19:35,957 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-15 00:19:36,491 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-11-15 00:19:37,007 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99?page=1 HTTP/1.1" 200 None 2026-11-15 00:19:37,457 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/statuses/38c5fff61b004cd2efee36b3f5c034d2b8f01c99?per_page=1 HTTP/1.1" 200 2 2026-11-15 00:19:37,457 [ scc.repo] DEBUG - PR 59 will-moore 'Apply settings to Plate' 2026-11-15 00:19:37,963 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/52 HTTP/1.1" 200 None 2026-11-15 00:19:38,445 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/52/comments HTTP/1.1" 200 None 2026-11-15 00:19:38,446 [ scc.repo] DEBUG ## Branches found: 2026-11-15 00:19:38,446 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render 2026-11-15 00:19:38,446 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:19:38,447 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:19:38,460 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-11-15 00:19:38,474 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-11-15 00:19:38,475 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-11-15 00:19:38,495 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-11-15 00:19:38,614 [ scc.git] DEBUG Updating ce6e13c..68b7303 2026-11-15 00:19:39,071 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/74 HTTP/1.1" 200 16725 2026-11-15 00:19:39,601 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/75 HTTP/1.1" 200 16780 2026-11-15 00:19:40,162 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/71 HTTP/1.1" 200 17096 2026-11-15 00:19:40,821 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/69 HTTP/1.1" 200 18082 2026-11-15 00:19:40,822 [ scc.git] DEBUG Calling 'git fetch origin pull/59/head' 2026-11-15 00:19:41,452 [ scc.git] DEBUG From https://github.com/ome/omero-cli-render 2026-11-15 00:19:41,452 [ scc.git] DEBUG * branch refs/pull/59/head -> FETCH_HEAD 2026-11-15 00:19:41,474 [ scc.git] DEBUG ## Unique users: [] 2026-11-15 00:19:41,474 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:19:41,474 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:19:41,486 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38c5fff61b004cd2efee36b3f5c034d2b8f01c99' 2026-11-15 00:19:41,520 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:19:41,532 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 59 (Apply settings to Plate) 38c5fff61b004cd2efee36b3f5c034d2b8f01c99' 2026-11-15 00:19:41,680 [ scc.git] DEBUG Auto-merging src/omero_cli_render.py 2026-11-15 00:19:41,731 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-15 00:19:41,781 [ scc.git] DEBUG src/omero_cli_render.py | 170 ++++++++++++++++++++++++++++-------------------- 2026-11-15 00:19:41,781 [ scc.git] DEBUG 1 file changed, 101 insertions(+), 69 deletions(-) 2026-11-15 00:19:41,968 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:19:41,969 [ scc.git] DEBUG Calling 'git submodule update' 2026-11-15 00:19:42,085 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:19:42,085 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:19:42,097 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-15 00:19:42,197 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-11-15 00:19:42,239 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f5cea1e8950> has no local changes 2026-11-15 00:19:42,239 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-cli-render Excluded PRs: - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft) Updating ce6e13c..68b7303 Previously merged: - PR 74 jburel 'Replace manual changelog by automated GH release step' - PR 75 jburel 'Sort the new channels to ensure settings are set' - PR 71 dominikl 'Escape slash character in image names' - PR 69 dominikl 'Fix help text for impo/export commands' Merged PRs: - PR 59 will-moore 'Apply settings to Plate' Generated by OMERO-plugins-push#127 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/127/)' 2026-11-15 00:19:42,339 [ scc.git] DEBUG [detached HEAD 6640479] merge master -Dorg -Ssuccess-only 2026-11-15 00:19:42,340 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:19:42,340 [ scc.repo] DEBUG ## PRs found: 2026-11-15 00:19:42,717 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls HTTP/1.1" 200 None 2026-11-15 00:19:43,212 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/178 HTTP/1.1" 200 None 2026-11-15 00:19:43,698 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/178/comments HTTP/1.1" 200 None 2026-11-15 00:19:44,279 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae?page=1 HTTP/1.1" 200 None 2026-11-15 00:19:44,788 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-15 00:19:45,278 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-11-15 00:19:45,769 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae?page=1 HTTP/1.1" 200 None 2026-11-15 00:19:46,240 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/f99a6a6869bf6259376adaea157f24955c9aa3ae?per_page=1 HTTP/1.1" 200 None 2026-11-15 00:19:46,718 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae?page=1 HTTP/1.1" 200 None 2026-11-15 00:19:47,185 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae/status HTTP/1.1" 200 None 2026-11-15 00:19:47,185 [ scc.repo] DEBUG - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' 2026-11-15 00:19:47,696 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/174 HTTP/1.1" 200 None 2026-11-15 00:19:48,207 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/174/comments HTTP/1.1" 200 None 2026-11-15 00:19:48,791 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c?page=1 HTTP/1.1" 200 None 2026-11-15 00:19:49,283 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-15 00:19:49,768 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c?page=1 HTTP/1.1" 200 None 2026-11-15 00:19:50,244 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/e795ce506487fad5c1184c909aaa1dab9a30401c?per_page=1 HTTP/1.1" 200 None 2026-11-15 00:19:50,736 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c?page=1 HTTP/1.1" 200 None 2026-11-15 00:19:51,211 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c/status HTTP/1.1" 200 None 2026-11-15 00:19:51,212 [ scc.repo] DEBUG - PR 174 will-moore 'Skip wells' 2026-11-15 00:19:51,714 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/166 HTTP/1.1" 200 None 2026-11-15 00:19:52,213 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/162 HTTP/1.1" 200 None 2026-11-15 00:19:52,741 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/123 HTTP/1.1" 200 None 2026-11-15 00:19:53,266 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/123/comments HTTP/1.1" 200 None 2026-11-15 00:19:53,774 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/256245946/issues/123/comments?page=2 HTTP/1.1" 200 None 2026-11-15 00:19:53,775 [ scc.repo] DEBUG ## Branches found: 2026-11-15 00:19:53,775 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr 2026-11-15 00:19:53,776 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:19:53,776 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:19:53,793 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-11-15 00:19:53,810 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-11-15 00:19:53,811 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-11-15 00:19:54,053 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-11-15 00:19:54,383 [ scc.git] DEBUG Updating 11d3587..d5f88d8 2026-11-15 00:19:54,925 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/193 HTTP/1.1" 200 16931 2026-11-15 00:19:55,484 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/182 HTTP/1.1" 200 16893 2026-11-15 00:19:56,007 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/194 HTTP/1.1" 200 16806 2026-11-15 00:19:56,582 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/197 HTTP/1.1" 200 17329 2026-11-15 00:19:57,099 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/196 HTTP/1.1" 200 20503 2026-11-15 00:19:57,677 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/172 HTTP/1.1" 200 17178 2026-11-15 00:19:58,242 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/192 HTTP/1.1" 200 16738 2026-11-15 00:19:58,779 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/186 HTTP/1.1" 200 16632 2026-11-15 00:19:59,424 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/187 HTTP/1.1" 200 16753 2026-11-15 00:19:59,969 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/180 HTTP/1.1" 200 18000 2026-11-15 00:20:00,511 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/179 HTTP/1.1" 200 16699 2026-11-15 00:20:01,135 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/177 HTTP/1.1" 200 16625 2026-11-15 00:20:01,698 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/175 HTTP/1.1" 200 17020 2026-11-15 00:20:02,269 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/147 HTTP/1.1" 200 17911 2026-11-15 00:20:02,892 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/173 HTTP/1.1" 200 16967 2026-11-15 00:20:03,453 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/171 HTTP/1.1" 200 16794 2026-11-15 00:20:03,968 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/168 HTTP/1.1" 200 16834 2026-11-15 00:20:04,067 [ scc.git] DEBUG Calling 'git fetch origin pull/174/head' 2026-11-15 00:20:04,823 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr 2026-11-15 00:20:04,823 [ scc.git] DEBUG * branch refs/pull/174/head -> FETCH_HEAD 2026-11-15 00:20:04,848 [ scc.git] DEBUG Calling 'git fetch origin pull/178/head' 2026-11-15 00:20:05,356 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr 2026-11-15 00:20:05,356 [ scc.git] DEBUG * branch refs/pull/178/head -> FETCH_HEAD 2026-11-15 00:20:05,378 [ scc.git] DEBUG ## Unique users: [] 2026-11-15 00:20:05,378 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:20:05,378 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:20:05,390 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...e795ce506487fad5c1184c909aaa1dab9a30401c' 2026-11-15 00:20:05,451 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:20:05,462 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 174 (Skip wells) e795ce506487fad5c1184c909aaa1dab9a30401c' 2026-11-15 00:20:05,838 [ scc.git] DEBUG Auto-merging README.rst 2026-11-15 00:20:05,838 [ scc.git] DEBUG Auto-merging src/omero_zarr/cli.py 2026-11-15 00:20:05,838 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/cli.py 2026-11-15 00:20:05,838 [ scc.git] DEBUG Auto-merging src/omero_zarr/masks.py 2026-11-15 00:20:05,838 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/masks.py 2026-11-15 00:20:05,838 [ scc.git] DEBUG Auto-merging src/omero_zarr/raw_pixels.py 2026-11-15 00:20:05,839 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/raw_pixels.py 2026-11-15 00:20:05,839 [ scc.git] DEBUG Auto-merging src/omero_zarr/util.py 2026-11-15 00:20:05,839 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/util.py 2026-11-15 00:20:05,839 [ scc.git] DEBUG Auto-merging test/integration/clitest/test_export.py 2026-11-15 00:20:05,839 [ scc.git] DEBUG CONFLICT (content): Merge conflict in test/integration/clitest/test_export.py 2026-11-15 00:20:05,857 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-11-15 00:20:05,858 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-11-15 00:20:05,889 [ scc.git] DEBUG Calling 'git reset --hard d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82' 2026-11-15 00:20:06,054 [ scc.git] DEBUG HEAD is now at d5f88d8 Bump version: 0.9.0 → 0.9.1.dev0 2026-11-15 00:20:06,229 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:20:06,229 [ scc.git] DEBUG Calling 'git merge-base d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82 e795ce506487fad5c1184c909aaa1dab9a30401c' 2026-11-15 00:20:06,283 [ scc.git] DEBUG Calling 'git diff --name-only 37ea7000309b4f8b87c5122c138fb59b17ecf86b..d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82' 2026-11-15 00:20:06,306 [ scc.git] INFO - PR 174 will-moore 'Skip wells' Conflicting PR. Removed from build [OMERO-plugins-push#127](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/127/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/127/consoleText) for more details. Possible conflicts: - Upstream changes - test/integration/clitest/test_export.py - src/omero_zarr/util.py - src/omero_zarr/cli.py - src/omero_zarr/raw_pixels.py - src/omero_zarr/masks.py --conflicts 2026-11-15 00:20:06,364 [ scc.config] DEBUG Found github.token 2026-11-15 00:20:06,364 [ scc.git] DEBUG Not adding comment to issue #174, already --conflicts. 2026-11-15 00:20:06,364 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...f99a6a6869bf6259376adaea157f24955c9aa3ae' 2026-11-15 00:20:06,418 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:20:06,431 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 178 (Fix export of masks with multi-theC as multi-channel labels) f99a6a6869bf6259376adaea157f24955c9aa3ae' 2026-11-15 00:20:06,650 [ scc.git] DEBUG Auto-merging src/omero_zarr/masks.py 2026-11-15 00:20:06,650 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/masks.py 2026-11-15 00:20:06,650 [ scc.git] DEBUG Auto-merging test/integration/clitest/test_export.py 2026-11-15 00:20:06,650 [ scc.git] DEBUG CONFLICT (content): Merge conflict in test/integration/clitest/test_export.py 2026-11-15 00:20:06,667 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-11-15 00:20:06,668 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-11-15 00:20:06,691 [ scc.git] DEBUG Calling 'git reset --hard d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82' 2026-11-15 00:20:06,803 [ scc.git] DEBUG HEAD is now at d5f88d8 Bump version: 0.9.0 → 0.9.1.dev0 2026-11-15 00:20:07,007 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:20:07,008 [ scc.git] DEBUG Calling 'git merge-base d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82 f99a6a6869bf6259376adaea157f24955c9aa3ae' 2026-11-15 00:20:07,056 [ scc.git] DEBUG Calling 'git diff --name-only 9530c10ba9823fcba6b39139987bf4bcd4a60179..d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82' 2026-11-15 00:20:07,081 [ scc.git] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' Conflicting PR. Removed from build [OMERO-plugins-push#127](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/127/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/127/consoleText) for more details. Possible conflicts: - PR #174 will-moore 'Skip wells' - src/omero_zarr/masks.py - test/integration/clitest/test_export.py - Upstream changes - src/omero_zarr/masks.py - test/integration/clitest/test_export.py --conflicts 2026-11-15 00:20:07,091 [ scc.config] DEBUG Found github.token 2026-11-15 00:20:07,092 [ scc.git] DEBUG Not adding comment to issue #178, already --conflicts. 2026-11-15 00:20:07,092 [ scc.git] DEBUG Calling 'git submodule update' 2026-11-15 00:20:07,207 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:20:07,207 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:20:07,219 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-15 00:20:07,318 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-11-15 00:20:07,370 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f5ce97e7f50> has no local changes 2026-11-15 00:20:07,370 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-cli-zarr Excluded PRs: - PR 166 will-moore 'Downsample scale option' (stage: draft) - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment) Updating 11d3587..d5f88d8 Previously merged: - PR 193 dominikl 'Only parse import uris if stated' - PR 182 will-moore 'Revert "Remove support for Plate import"' - PR 194 will-moore 'Update uk1s3.embassy links to livingobjects' - PR 197 pwalczysko 'Fix pragma' - PR 196 will-moore 'Storage options only if needed' - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' - PR 192 jburel 'Set Omero pixel size' - PR 186 jburel 'Create release from tag' - PR 187 dominikl 'Fix target-by-name option' - PR 180 will-moore 'Import command' - PR 179 will-moore 'Changelog 0.6.0' - PR 177 jburel 'Replace fromstring by frombuffer' - PR 175 will-moore 'Pin ome-zarr-py <0.12.0' - PR 147 will-moore 'Name option' - PR 173 will-moore 'Add test_export_plate_polygons()' - PR 171 will-moore 'Initial addition of integration tests' - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Conflicting PRs (not included): - PR 174 will-moore 'Skip wells' - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' Generated by OMERO-plugins-push#127 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/127/)' 2026-11-15 00:20:07,505 [ scc.git] DEBUG [detached HEAD 9266f28] merge master -Dorg -Ssuccess-only 2026-11-15 00:20:07,507 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:20:07,507 [ scc.repo] DEBUG ## PRs found: 2026-11-15 00:20:07,942 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls HTTP/1.1" 200 None 2026-11-15 00:20:08,460 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/715 HTTP/1.1" 200 None 2026-11-15 00:20:08,972 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/715/comments HTTP/1.1" 200 None 2026-11-15 00:20:09,494 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/714 HTTP/1.1" 200 None 2026-11-15 00:20:09,495 [ scc.repo] DEBUG # ... Include label: include 2026-11-15 00:20:10,518 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/4986b38e7c0c9b3a1c7fd869236f734346741155?page=1 HTTP/1.1" 200 None 2026-11-15 00:20:11,284 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/4986b38e7c0c9b3a1c7fd869236f734346741155/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-15 00:20:11,808 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/4986b38e7c0c9b3a1c7fd869236f734346741155/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-11-15 00:20:12,307 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/4986b38e7c0c9b3a1c7fd869236f734346741155?page=1 HTTP/1.1" 200 None 2026-11-15 00:20:12,808 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/4986b38e7c0c9b3a1c7fd869236f734346741155?per_page=1 HTTP/1.1" 200 2 2026-11-15 00:20:12,808 [ scc.repo] DEBUG - PR 714 Rdornier 'Fix scalebar label' 2026-11-15 00:20:13,330 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/713 HTTP/1.1" 200 None 2026-11-15 00:20:13,816 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/713/comments HTTP/1.1" 200 None 2026-11-15 00:20:13,816 [ scc.repo] DEBUG # ... Include label: dependencies 2026-11-15 00:20:14,459 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/383c0e213c0357ff8a4502ef5a50899573132af4?page=1 HTTP/1.1" 200 None 2026-11-15 00:20:14,989 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/383c0e213c0357ff8a4502ef5a50899573132af4/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-15 00:20:15,515 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/383c0e213c0357ff8a4502ef5a50899573132af4/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-11-15 00:20:16,014 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/383c0e213c0357ff8a4502ef5a50899573132af4?page=1 HTTP/1.1" 200 None 2026-11-15 00:20:16,489 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/383c0e213c0357ff8a4502ef5a50899573132af4?per_page=1 HTTP/1.1" 200 2 2026-11-15 00:20:16,490 [ scc.repo] DEBUG - PR 713 dependabot[bot] 'Bump dompurify from 3.4.13 to 3.4.17' 2026-11-15 00:20:17,031 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/712 HTTP/1.1" 200 None 2026-11-15 00:20:17,032 [ scc.repo] DEBUG # ... Include label: dependencies 2026-11-15 00:20:17,688 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/71c40c7187ed81dc041307f27b0fdd06efd4ca86?page=1 HTTP/1.1" 200 None 2026-11-15 00:20:18,224 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/71c40c7187ed81dc041307f27b0fdd06efd4ca86/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-15 00:20:18,743 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/71c40c7187ed81dc041307f27b0fdd06efd4ca86/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-11-15 00:20:19,255 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/711 HTTP/1.1" 200 None 2026-11-15 00:20:19,738 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/711/comments HTTP/1.1" 200 None 2026-11-15 00:20:19,739 [ scc.repo] DEBUG # ... Include label: dependencies 2026-11-15 00:20:20,659 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/5affb9919bd08c4de17797109288085f666c6ad4?page=1 HTTP/1.1" 200 None 2026-11-15 00:20:21,223 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/5affb9919bd08c4de17797109288085f666c6ad4/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-15 00:20:21,750 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/5affb9919bd08c4de17797109288085f666c6ad4/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-11-15 00:20:22,301 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/5affb9919bd08c4de17797109288085f666c6ad4?page=1 HTTP/1.1" 200 None 2026-11-15 00:20:22,766 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/5affb9919bd08c4de17797109288085f666c6ad4?per_page=1 HTTP/1.1" 200 2 2026-11-15 00:20:22,767 [ scc.repo] DEBUG - PR 711 dependabot[bot] 'Bump source-map-js from 1.2.1 to 1.2.2' 2026-11-15 00:20:23,264 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/706 HTTP/1.1" 200 None 2026-11-15 00:20:23,798 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/706/comments HTTP/1.1" 200 None 2026-11-15 00:20:24,848 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/bacbdf587bdcadbcd935ba06acb19db42021f067?page=1 HTTP/1.1" 200 None 2026-11-15 00:20:25,395 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/bacbdf587bdcadbcd935ba06acb19db42021f067/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-15 00:20:25,919 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/bacbdf587bdcadbcd935ba06acb19db42021f067/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-11-15 00:20:26,402 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/bacbdf587bdcadbcd935ba06acb19db42021f067?page=1 HTTP/1.1" 200 None 2026-11-15 00:20:26,850 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/bacbdf587bdcadbcd935ba06acb19db42021f067?per_page=1 HTTP/1.1" 200 2 2026-11-15 00:20:26,851 [ scc.repo] DEBUG - PR 706 will-moore 'Figure repo migration' 2026-11-15 00:20:26,851 [ scc.repo] DEBUG ## Branches found: 2026-11-15 00:20:26,851 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure 2026-11-15 00:20:26,852 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:20:26,852 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:20:26,871 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-11-15 00:20:26,901 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-11-15 00:20:26,901 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-11-15 00:20:27,894 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-11-15 00:20:29,140 [ scc.git] DEBUG Updating 9cc36cde..3195c3df 2026-11-15 00:20:29,417 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/704 HTTP/1.1" 200 16553 2026-11-15 00:20:30,053 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/703 HTTP/1.1" 200 16998 2026-11-15 00:20:30,599 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/700 HTTP/1.1" 200 17377 2026-11-15 00:20:31,143 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/692 HTTP/1.1" 200 17063 2026-11-15 00:20:31,671 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/701 HTTP/1.1" 200 17073 2026-11-15 00:20:32,204 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/698 HTTP/1.1" 200 23200 2026-11-15 00:20:32,721 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/697 HTTP/1.1" 200 27023 2026-11-15 00:20:33,236 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/695 HTTP/1.1" 200 30159 2026-11-15 00:20:33,754 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/693 HTTP/1.1" 200 26129 2026-11-15 00:20:34,274 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/691 HTTP/1.1" 200 30412 2026-11-15 00:20:34,832 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/686 HTTP/1.1" 200 18972 2026-11-15 00:20:35,364 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/690 HTTP/1.1" 200 24576 2026-11-15 00:20:35,893 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/681 HTTP/1.1" 200 23730 2026-11-15 00:20:36,440 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/688 HTTP/1.1" 200 17637 2026-11-15 00:20:36,990 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/685 HTTP/1.1" 200 17617 2026-11-15 00:20:37,537 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/683 HTTP/1.1" 200 17584 2026-11-15 00:20:38,074 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/680 HTTP/1.1" 200 17047 2026-11-15 00:20:38,631 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/684 HTTP/1.1" 200 17088 2026-11-15 00:20:39,154 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/682 HTTP/1.1" 200 27786 2026-11-15 00:20:39,696 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/679 HTTP/1.1" 200 17594 2026-11-15 00:20:40,207 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/677 HTTP/1.1" 200 21222 2026-11-15 00:20:40,766 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/666 HTTP/1.1" 200 17602 2026-11-15 00:20:41,280 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/676 HTTP/1.1" 200 28197 2026-11-15 00:20:41,817 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/669 HTTP/1.1" 200 18576 2026-11-15 00:20:42,350 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/662 HTTP/1.1" 200 17022 2026-11-15 00:20:42,912 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/663 HTTP/1.1" 200 21023 2026-11-15 00:20:43,444 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/674 HTTP/1.1" 200 30273 2026-11-15 00:20:43,942 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/675 HTTP/1.1" 200 26168 2026-11-15 00:20:44,443 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/671 HTTP/1.1" 200 20939 2026-11-15 00:20:45,057 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/672 HTTP/1.1" 200 17459 2026-11-15 00:20:45,608 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/667 HTTP/1.1" 200 20410 2026-11-15 00:20:46,303 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/665 HTTP/1.1" 200 19341 2026-11-15 00:20:46,938 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/656 HTTP/1.1" 200 19297 2026-11-15 00:20:47,452 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/670 HTTP/1.1" 200 32211 2026-11-15 00:20:48,038 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/664 HTTP/1.1" 200 19360 2026-11-15 00:20:48,739 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/654 HTTP/1.1" 200 20367 2026-11-15 00:20:49,323 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/648 HTTP/1.1" 200 18824 2026-11-15 00:20:49,864 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/661 HTTP/1.1" 200 17205 2026-11-15 00:20:50,423 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/649 HTTP/1.1" 200 17044 2026-11-15 00:20:50,982 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/657 HTTP/1.1" 200 17325 2026-11-15 00:20:51,510 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/637 HTTP/1.1" 200 19459 2026-11-15 00:20:52,051 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/600 HTTP/1.1" 200 20069 2026-11-15 00:20:52,612 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/653 HTTP/1.1" 200 19258 2026-11-15 00:20:53,134 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/651 HTTP/1.1" 200 18459 2026-11-15 00:20:53,711 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/650 HTTP/1.1" 200 18000 2026-11-15 00:20:54,338 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/647 HTTP/1.1" 200 18672 2026-11-15 00:20:54,900 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/610 HTTP/1.1" 200 18404 2026-11-15 00:20:55,413 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/644 HTTP/1.1" 200 24935 2026-11-15 00:20:55,978 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/646 HTTP/1.1" 200 18472 2026-11-15 00:20:56,522 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/612 HTTP/1.1" 200 21807 2026-11-15 00:20:57,030 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/630 HTTP/1.1" 200 18406 2026-11-15 00:20:57,574 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/616 HTTP/1.1" 200 18368 2026-11-15 00:20:58,177 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/605 HTTP/1.1" 200 21786 2026-11-15 00:20:58,704 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/638 HTTP/1.1" 200 19388 2026-11-15 00:20:59,629 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/633 HTTP/1.1" 200 27169 2026-11-15 00:21:00,195 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/635 HTTP/1.1" 200 43640 2026-11-15 00:21:00,871 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/623 HTTP/1.1" 200 18346 2026-11-15 00:21:01,401 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/631 HTTP/1.1" 200 16918 2026-11-15 00:21:01,402 [ scc.git] DEBUG Calling 'git fetch origin pull/706/head' 2026-11-15 00:21:01,964 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2026-11-15 00:21:01,964 [ scc.git] DEBUG * branch refs/pull/706/head -> FETCH_HEAD 2026-11-15 00:21:01,990 [ scc.git] DEBUG Calling 'git fetch origin pull/711/head' 2026-11-15 00:21:02,480 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2026-11-15 00:21:02,480 [ scc.git] DEBUG * branch refs/pull/711/head -> FETCH_HEAD 2026-11-15 00:21:02,505 [ scc.git] DEBUG Calling 'git fetch origin pull/713/head' 2026-11-15 00:21:03,030 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2026-11-15 00:21:03,030 [ scc.git] DEBUG * branch refs/pull/713/head -> FETCH_HEAD 2026-11-15 00:21:03,056 [ scc.git] DEBUG Calling 'git fetch origin pull/714/head' 2026-11-15 00:21:03,701 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2026-11-15 00:21:03,701 [ scc.git] DEBUG * branch refs/pull/714/head -> FETCH_HEAD 2026-11-15 00:21:03,726 [ scc.git] DEBUG ## Unique users: [] 2026-11-15 00:21:03,726 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:21:03,726 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:21:03,740 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...bacbdf587bdcadbcd935ba06acb19db42021f067' 2026-11-15 00:21:03,883 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:21:03,896 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 706 (Figure repo migration) bacbdf587bdcadbcd935ba06acb19db42021f067' 2026-11-15 00:21:04,437 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-15 00:21:04,514 [ scc.git] DEBUG .bumpversion.cfg | 2 - 2026-11-15 00:21:04,514 [ scc.git] DEBUG .github/workflows/omero_plugin.yml | 2 + 2026-11-15 00:21:04,514 [ scc.git] DEBUG .github/workflows/pages.yml | 28 - 2026-11-15 00:21:04,514 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 + 2026-11-15 00:21:04,514 [ scc.git] DEBUG .gitignore | 6 +- 2026-11-15 00:21:04,514 [ scc.git] DEBUG .gitmodules | 3 + 2026-11-15 00:21:04,514 [ scc.git] DEBUG .omeroci/app-deps | 3 +- 2026-11-15 00:21:04,514 [ scc.git] DEBUG README.rst | 76 +- 2026-11-15 00:21:04,514 [ scc.git] DEBUG deploy_build.sh | 16 +- 2026-11-15 00:21:04,514 [ scc.git] DEBUG deploy_ghpages.sh | 1 + 2026-11-15 00:21:04,514 [ scc.git] DEBUG figure | 1 + 2026-11-15 00:21:04,514 [ scc.git] DEBUG .../scripts/omero/figure_scripts/Figure_To_Pdf.py | 2 +- 2026-11-15 00:21:04,514 [ scc.git] DEBUG omero_figure/views.py | 52 +- 2026-11-15 00:21:04,514 [ scc.git] DEBUG package-lock.json | 1499 --------------- 2026-11-15 00:21:04,514 [ scc.git] DEBUG package.json | 51 - 2026-11-15 00:21:04,514 [ scc.git] DEBUG setup.py | 8 + 2026-11-15 00:21:04,514 [ scc.git] DEBUG src/css/figure.css | 1551 --------------- 2026-11-15 00:21:04,514 [ scc.git] DEBUG src/html/dialogs/scriptManagerDialog.html | 86 - 2026-11-15 00:21:04,514 [ scc.git] DEBUG src/images/arrow-icon-16.png | Bin 2878 -> 0 bytes 2026-11-15 00:21:04,514 [ scc.git] DEBUG src/images/button-down-grey.png | Bin 3274 -> 0 bytes 2026-11-15 00:21:04,514 [ scc.git] DEBUG src/images/button-down.png | Bin 1879 -> 0 bytes 2026-11-15 00:21:04,514 [ scc.git] DEBUG src/images/button-flat.png | Bin 2827 -> 0 bytes 2026-11-15 00:21:04,514 [ scc.git] DEBUG src/images/button-up.png | Bin 2111 -> 0 bytes 2026-11-15 00:21:04,514 [ scc.git] DEBUG src/images/crop20.png | Bin 3022 -> 0 bytes 2026-11-15 00:21:04,514 [ scc.git] DEBUG src/images/cursor-icon-16.png | Bin 245 -> 0 bytes 2026-11-15 00:21:04,514 [ scc.git] DEBUG src/images/ellipse-icon-16.png | Bin 3020 -> 0 bytes 2026-11-15 00:21:04,514 [ scc.git] DEBUG src/images/gradient.png | Bin 3405 -> 0 bytes 2026-11-15 00:21:04,514 [ scc.git] DEBUG src/images/hue.png | Bin 2837 -> 0 bytes 2026-11-15 00:21:04,514 [ scc.git] DEBUG src/images/line-icon-16.png | Bin 2865 -> 0 bytes 2026-11-15 00:21:04,514 [ scc.git] DEBUG src/images/luts_10.png | Bin 18556 -> 0 bytes 2026-11-15 00:21:04,514 [ scc.git] DEBUG src/images/markdown_dark32x20.png | Bin 3116 -> 0 bytes 2026-11-15 00:21:04,514 [ scc.git] DEBUG src/images/markdown_light32x20.png | Bin 3089 -> 0 bytes 2026-11-15 00:21:04,514 [ scc.git] DEBUG src/images/point-icon-24.png | Bin 2477 -> 0 bytes 2026-11-15 00:21:04,514 [ scc.git] DEBUG src/images/polygon-icon-16.png | Bin 2880 -> 0 bytes 2026-11-15 00:21:04,514 [ scc.git] DEBUG src/images/polyline-icon-16.png | Bin 2874 -> 0 bytes 2026-11-15 00:21:04,514 [ scc.git] DEBUG src/images/projection20.png | Bin 3585 -> 0 bytes 2026-11-15 00:21:04,514 [ scc.git] DEBUG src/images/square-outline-icon-16.png | Bin 96 -> 0 bytes 2026-11-15 00:21:04,514 [ scc.git] DEBUG src/images/text-icon-24.png | Bin 2477 -> 0 bytes 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/index.html | 1986 -------------------- 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/js/main.js | 189 -- 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/js/models/figure_model.js | 1398 -------------- 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/js/models/panel_model.js | 1577 ---------------- 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/js/models/roi_model.js | 149 -- 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/js/models/undo.js | 282 --- 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/js/models/zarr_utils.js | 483 ----- 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/js/shapeEditorTest.js | 454 ----- 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/js/shape_editor/ellipse.js | 604 ------ 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/js/shape_editor/line.js | 612 ------ 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/js/shape_editor/point.js | 527 ------ 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/js/shape_editor/polygon.js | 462 ----- 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/js/shape_editor/rect.js | 618 ------ 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/js/shape_editor/shape_manager.js | 992 ---------- 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/js/shape_editor/text.js | 564 ------ 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/js/views/backbone.mousetrap.js | 69 - 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/js/views/channel_slider_view.js | 450 ----- 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/js/views/chgrp_modal_view.js | 143 -- 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/js/views/colorbar_form_view.js | 124 -- 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/js/views/colorpicker.js | 143 -- 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/js/views/crop_modal_view.js | 660 ------- 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/js/views/figure_view.js | 1125 ----------- 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/js/views/files.js | 374 ---- 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/js/views/info_panel_view.js | 293 --- 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/js/views/label_suggestions.js | 753 -------- 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/js/views/labels_from_maps_modal.js | 197 -- 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/js/views/legend_view.js | 174 -- 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/js/views/lutpicker.js | 181 -- 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/js/views/modal_views.js | 536 ------ 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/js/views/open_local_file_modal.js | 77 - 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/js/views/panel_view.js | 501 ----- 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/js/views/raphael-rect.js | 291 --- 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/js/views/right_panel_view.js | 1572 ---------------- 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/js/views/roi_loader_view.js | 250 --- 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/js/views/roi_modal_view.js | 645 ------- 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/js/views/scalebar_form_view.js | 230 --- 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/js/views/svg_model_view.js | 441 ----- 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/js/views/util.csrf.js | 83 - 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/js/views/util.js | 397 ---- 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/js/views/zt_sliders_view.js | 332 ---- 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/scss/styles.scss | 2 - 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/shapeEditorTest.html | 198 -- 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/templates/channel_slider.template.html | 90 - 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/templates/checkbox_template.html | 4 - 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/templates/colorbar.template.html | 42 - 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/templates/colorbar_form.template.html | 137 -- 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/templates/figure_panel.template.html | 6 - 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/templates/files/figure_file_item.template.html | 32 - 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/templates/image_display_options.template.html | 34 - 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/templates/info_panel.template.html | 54 - 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/templates/labels/label.template.html | 8 - 2026-11-15 00:21:04,515 [ scc.git] DEBUG .../labels/label_right_vertical.template.html | 8 - 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/templates/labels/label_table.template.html | 11 - 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/templates/labels/label_vertical.template.html | 8 - 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/templates/labels_form.template.html | 13 - 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/templates/labels_form_inner.template.html | 128 -- 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/templates/lut_picker.template.html | 21 - 2026-11-15 00:21:04,515 [ scc.git] DEBUG .../modal_dialogs/crop_modal_roi.template.html | 30 - 2026-11-15 00:21:04,515 [ scc.git] DEBUG .../modal_dialogs/paper_setup_modal.template.html | 108 -- 2026-11-15 00:21:04,515 [ scc.git] DEBUG .../modal_dialogs/preview_id_change.template.html | 65 - 2026-11-15 00:21:04,515 [ scc.git] DEBUG .../modal_dialogs/roi_modal_roi.template.html | 56 - 2026-11-15 00:21:04,515 [ scc.git] DEBUG .../modal_dialogs/roi_modal_shape.template.html | 42 - 2026-11-15 00:21:04,515 [ scc.git] DEBUG .../modal_dialogs/roi_zt_buttons.template.html | 9 - 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/templates/rois_form.template.html | 246 --- 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/templates/scalebar_form.template.html | 154 -- 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/templates/scalebar_panel.template.html | 10 - 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/templates/shapes/shape_item_template.html | 12 - 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/templates/shapes/shape_sidebar.template.html | 56 - 2026-11-15 00:21:04,515 [ scc.git] DEBUG src/templates/shapes/shape_toolbar.template.html | 226 --- 2026-11-15 00:21:04,516 [ scc.git] DEBUG src/templates/viewport.template.html | 5 - 2026-11-15 00:21:04,516 [ scc.git] DEBUG src/templates/viewport_inner.template.html | 12 - 2026-11-15 00:21:04,516 [ scc.git] DEBUG src/templates/xywh_panel.template.html | 60 - 2026-11-15 00:21:04,516 [ scc.git] DEBUG src/templates/zoom_crop.template.html | 28 - 2026-11-15 00:21:04,516 [ scc.git] DEBUG src/test.html | 25 - 2026-11-15 00:21:04,516 [ scc.git] DEBUG vite.config.js | 32 - 2026-11-15 00:21:04,516 [ scc.git] DEBUG 113 files changed, 107 insertions(+), 26192 deletions(-) 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 .github/workflows/pages.yml 2026-11-15 00:21:04,516 [ scc.git] DEBUG create mode 100644 .gitmodules 2026-11-15 00:21:04,516 [ scc.git] DEBUG create mode 160000 figure 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 package-lock.json 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 package.json 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/css/figure.css 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/html/dialogs/scriptManagerDialog.html 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/images/arrow-icon-16.png 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/images/button-down-grey.png 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/images/button-down.png 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/images/button-flat.png 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/images/button-up.png 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/images/crop20.png 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/images/cursor-icon-16.png 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/images/ellipse-icon-16.png 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/images/gradient.png 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/images/hue.png 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/images/line-icon-16.png 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/images/luts_10.png 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/images/markdown_dark32x20.png 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/images/markdown_light32x20.png 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/images/point-icon-24.png 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/images/polygon-icon-16.png 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/images/polyline-icon-16.png 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/images/projection20.png 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/images/square-outline-icon-16.png 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/images/text-icon-24.png 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/index.html 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/js/main.js 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/js/models/figure_model.js 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/js/models/panel_model.js 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/js/models/roi_model.js 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/js/models/undo.js 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/js/models/zarr_utils.js 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/js/shapeEditorTest.js 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/js/shape_editor/ellipse.js 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/js/shape_editor/line.js 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/js/shape_editor/point.js 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/js/shape_editor/polygon.js 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/js/shape_editor/rect.js 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/js/shape_editor/shape_manager.js 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/js/shape_editor/text.js 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/js/views/backbone.mousetrap.js 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/js/views/channel_slider_view.js 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/js/views/chgrp_modal_view.js 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/js/views/colorbar_form_view.js 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/js/views/colorpicker.js 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/js/views/crop_modal_view.js 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/js/views/figure_view.js 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/js/views/files.js 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/js/views/info_panel_view.js 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/js/views/label_suggestions.js 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/js/views/labels_from_maps_modal.js 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/js/views/legend_view.js 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/js/views/lutpicker.js 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/js/views/modal_views.js 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/js/views/open_local_file_modal.js 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/js/views/panel_view.js 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/js/views/raphael-rect.js 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/js/views/right_panel_view.js 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/js/views/roi_loader_view.js 2026-11-15 00:21:04,516 [ scc.git] DEBUG delete mode 100644 src/js/views/roi_modal_view.js 2026-11-15 00:21:04,517 [ scc.git] DEBUG delete mode 100644 src/js/views/scalebar_form_view.js 2026-11-15 00:21:04,517 [ scc.git] DEBUG delete mode 100644 src/js/views/svg_model_view.js 2026-11-15 00:21:04,517 [ scc.git] DEBUG delete mode 100644 src/js/views/util.csrf.js 2026-11-15 00:21:04,517 [ scc.git] DEBUG delete mode 100644 src/js/views/util.js 2026-11-15 00:21:04,517 [ scc.git] DEBUG delete mode 100644 src/js/views/zt_sliders_view.js 2026-11-15 00:21:04,517 [ scc.git] DEBUG delete mode 100644 src/scss/styles.scss 2026-11-15 00:21:04,517 [ scc.git] DEBUG delete mode 100644 src/shapeEditorTest.html 2026-11-15 00:21:04,517 [ scc.git] DEBUG delete mode 100644 src/templates/channel_slider.template.html 2026-11-15 00:21:04,517 [ scc.git] DEBUG delete mode 100644 src/templates/checkbox_template.html 2026-11-15 00:21:04,517 [ scc.git] DEBUG delete mode 100644 src/templates/colorbar.template.html 2026-11-15 00:21:04,517 [ scc.git] DEBUG delete mode 100644 src/templates/colorbar_form.template.html 2026-11-15 00:21:04,517 [ scc.git] DEBUG delete mode 100644 src/templates/figure_panel.template.html 2026-11-15 00:21:04,517 [ scc.git] DEBUG delete mode 100644 src/templates/files/figure_file_item.template.html 2026-11-15 00:21:04,517 [ scc.git] DEBUG delete mode 100644 src/templates/image_display_options.template.html 2026-11-15 00:21:04,517 [ scc.git] DEBUG delete mode 100644 src/templates/info_panel.template.html 2026-11-15 00:21:04,517 [ scc.git] DEBUG delete mode 100644 src/templates/labels/label.template.html 2026-11-15 00:21:04,517 [ scc.git] DEBUG delete mode 100644 src/templates/labels/label_right_vertical.template.html 2026-11-15 00:21:04,517 [ scc.git] DEBUG delete mode 100644 src/templates/labels/label_table.template.html 2026-11-15 00:21:04,517 [ scc.git] DEBUG delete mode 100644 src/templates/labels/label_vertical.template.html 2026-11-15 00:21:04,517 [ scc.git] DEBUG delete mode 100644 src/templates/labels_form.template.html 2026-11-15 00:21:04,517 [ scc.git] DEBUG delete mode 100644 src/templates/labels_form_inner.template.html 2026-11-15 00:21:04,517 [ scc.git] DEBUG delete mode 100644 src/templates/lut_picker.template.html 2026-11-15 00:21:04,517 [ scc.git] DEBUG delete mode 100644 src/templates/modal_dialogs/crop_modal_roi.template.html 2026-11-15 00:21:04,517 [ scc.git] DEBUG delete mode 100644 src/templates/modal_dialogs/paper_setup_modal.template.html 2026-11-15 00:21:04,517 [ scc.git] DEBUG delete mode 100644 src/templates/modal_dialogs/preview_id_change.template.html 2026-11-15 00:21:04,517 [ scc.git] DEBUG delete mode 100644 src/templates/modal_dialogs/roi_modal_roi.template.html 2026-11-15 00:21:04,517 [ scc.git] DEBUG delete mode 100644 src/templates/modal_dialogs/roi_modal_shape.template.html 2026-11-15 00:21:04,517 [ scc.git] DEBUG delete mode 100644 src/templates/modal_dialogs/roi_zt_buttons.template.html 2026-11-15 00:21:04,517 [ scc.git] DEBUG delete mode 100644 src/templates/rois_form.template.html 2026-11-15 00:21:04,541 [ scc.git] DEBUG delete mode 100644 src/templates/scalebar_form.template.html 2026-11-15 00:21:04,541 [ scc.git] DEBUG delete mode 100644 src/templates/scalebar_panel.template.html 2026-11-15 00:21:04,541 [ scc.git] DEBUG delete mode 100644 src/templates/shapes/shape_item_template.html 2026-11-15 00:21:04,541 [ scc.git] DEBUG delete mode 100644 src/templates/shapes/shape_sidebar.template.html 2026-11-15 00:21:04,541 [ scc.git] DEBUG delete mode 100644 src/templates/shapes/shape_toolbar.template.html 2026-11-15 00:21:04,541 [ scc.git] DEBUG delete mode 100644 src/templates/viewport.template.html 2026-11-15 00:21:04,541 [ scc.git] DEBUG delete mode 100644 src/templates/viewport_inner.template.html 2026-11-15 00:21:04,541 [ scc.git] DEBUG delete mode 100644 src/templates/xywh_panel.template.html 2026-11-15 00:21:04,541 [ scc.git] DEBUG delete mode 100644 src/templates/zoom_crop.template.html 2026-11-15 00:21:04,541 [ scc.git] DEBUG delete mode 100644 src/test.html 2026-11-15 00:21:04,541 [ scc.git] DEBUG delete mode 100755 vite.config.js 2026-11-15 00:21:04,747 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:21:04,748 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5affb9919bd08c4de17797109288085f666c6ad4' 2026-11-15 00:21:04,811 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:21:04,822 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 711 (Bump source-map-js from 1.2.1 to 1.2.2) 5affb9919bd08c4de17797109288085f666c6ad4' 2026-11-15 00:21:05,002 [ scc.git] DEBUG CONFLICT (modify/delete): package-lock.json deleted in HEAD and modified in 5affb9919bd08c4de17797109288085f666c6ad4. Version 5affb9919bd08c4de17797109288085f666c6ad4 of package-lock.json left in tree. 2026-11-15 00:21:05,023 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-11-15 00:21:05,027 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-11-15 00:21:05,054 [ scc.git] DEBUG Calling 'git reset --hard c87433464791189b7593a73ada8ee508e1f95d5b' 2026-11-15 00:21:05,186 [ scc.git] DEBUG HEAD is now at c8743346 merge master -Dorg -Ssuccess-only: PR 706 (Figure repo migration) 2026-11-15 00:21:05,378 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:21:05,378 [ scc.git] DEBUG Calling 'git merge-base 3195c3df4e7bf2507d9c942d5d8c9a8566498147 5affb9919bd08c4de17797109288085f666c6ad4' 2026-11-15 00:21:05,409 [ scc.git] DEBUG Calling 'git diff --name-only 3195c3df4e7bf2507d9c942d5d8c9a8566498147..3195c3df4e7bf2507d9c942d5d8c9a8566498147' 2026-11-15 00:21:05,437 [ scc.git] INFO - PR 711 dependabot[bot] 'Bump source-map-js from 1.2.1 to 1.2.2' Conflicting PR. Removed from build [OMERO-plugins-push#127](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/127/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/127/consoleText) for more details. Possible conflicts: - PR #706 will-moore 'Figure repo migration' - package-lock.json --conflicts 2026-11-15 00:21:05,447 [ scc.config] DEBUG Found github.token 2026-11-15 00:21:05,447 [ scc.git] DEBUG Not adding comment to issue #711, already --conflicts. 2026-11-15 00:21:05,447 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...383c0e213c0357ff8a4502ef5a50899573132af4' 2026-11-15 00:21:05,481 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:21:05,492 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 713 (Bump dompurify from 3.4.13 to 3.4.17) 383c0e213c0357ff8a4502ef5a50899573132af4' 2026-11-15 00:21:05,666 [ scc.git] DEBUG CONFLICT (modify/delete): package-lock.json deleted in HEAD and modified in 383c0e213c0357ff8a4502ef5a50899573132af4. Version 383c0e213c0357ff8a4502ef5a50899573132af4 of package-lock.json left in tree. 2026-11-15 00:21:05,666 [ scc.git] DEBUG CONFLICT (modify/delete): package.json deleted in HEAD and modified in 383c0e213c0357ff8a4502ef5a50899573132af4. Version 383c0e213c0357ff8a4502ef5a50899573132af4 of package.json left in tree. 2026-11-15 00:21:05,684 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-11-15 00:21:05,689 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-11-15 00:21:05,711 [ scc.git] DEBUG Calling 'git reset --hard c87433464791189b7593a73ada8ee508e1f95d5b' 2026-11-15 00:21:05,808 [ scc.git] DEBUG HEAD is now at c8743346 merge master -Dorg -Ssuccess-only: PR 706 (Figure repo migration) 2026-11-15 00:21:06,033 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:21:06,034 [ scc.git] DEBUG Calling 'git merge-base 3195c3df4e7bf2507d9c942d5d8c9a8566498147 383c0e213c0357ff8a4502ef5a50899573132af4' 2026-11-15 00:21:06,063 [ scc.git] DEBUG Calling 'git diff --name-only 3195c3df4e7bf2507d9c942d5d8c9a8566498147..3195c3df4e7bf2507d9c942d5d8c9a8566498147' 2026-11-15 00:21:06,087 [ scc.git] INFO - PR 713 dependabot[bot] 'Bump dompurify from 3.4.13 to 3.4.17' Conflicting PR. Removed from build [OMERO-plugins-push#127](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/127/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/127/consoleText) for more details. Possible conflicts: - PR #706 will-moore 'Figure repo migration' - package-lock.json - package.json - PR #711 dependabot[bot] 'Bump source-map-js from 1.2.1 to 1.2.2' - package-lock.json --conflicts 2026-11-15 00:21:06,098 [ scc.config] DEBUG Found github.token 2026-11-15 00:21:06,098 [ scc.git] DEBUG Not adding comment to issue #713, already --conflicts. 2026-11-15 00:21:06,098 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...4986b38e7c0c9b3a1c7fd869236f734346741155' 2026-11-15 00:21:06,154 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:21:06,167 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 714 (Fix scalebar label) 4986b38e7c0c9b3a1c7fd869236f734346741155' 2026-11-15 00:21:06,392 [ scc.git] DEBUG Auto-merging omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 2026-11-15 00:21:06,452 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-15 00:21:06,512 [ scc.git] DEBUG .../scripts/omero/figure_scripts/Figure_To_Pdf.py | 147 +++++++++++---------- 2026-11-15 00:21:06,512 [ scc.git] DEBUG 1 file changed, 78 insertions(+), 69 deletions(-) 2026-11-15 00:21:06,702 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:21:06,703 [ scc.git] DEBUG Calling 'git submodule update' 2026-11-15 00:21:06,806 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:21:06,806 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:21:06,818 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-15 00:21:06,923 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-11-15 00:21:07,007 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f5ce97fd210> has no local changes 2026-11-15 00:21:07,007 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-figure Excluded PRs: - PR 715 Rdornier 'Fix VSI pyramids rendering' (user: Rdornier) - PR 712 dependabot[bot] 'Bump vite from 8.0.16 to 8.1.6' (status: failure) Updating 9cc36cde..3195c3df Previously merged: - PR 704 jburel 'Revert commit 49ae9c9' - PR 703 will-moore 'Readme remove rc' - PR 700 will-moore 'Fix parentheses in zoom level for loop for export script' - PR 692 will-moore 'colorbar lut background fix' - PR 701 will-moore 'bump nanoid to 3.3.18 with 'npm audit fix'' - PR 698 dependabot[bot] 'Bump dompurify from 3.4.9 to 3.4.13' - PR 697 dependabot[bot] 'Bump postcss from 8.5.15 to 8.5.25' - PR 695 dependabot[bot] 'Bump immutable from 5.1.6 to 5.1.9' - PR 693 dependabot[bot] 'Bump dompurify from 3.4.0 to 3.4.9' - PR 691 dependabot[bot] 'Bump esbuild and vite' - PR 686 will-moore 'Add note about zarr etc requirement for export script with zarr images' - PR 690 dependabot[bot] 'Bump postcss from 8.5.3 to 8.5.15' - PR 681 dependabot[bot] 'Bump dompurify from 3.3.2 to 3.4.0' - PR 688 will-moore 'app handles ?image=1 without needing /new?image=1' - PR 685 will-moore 'Fix static files links for release build' - PR 683 will-moore 'Add touch support for clicking on single panel' - PR 680 will-moore 'Use --pre install for export script in README' - PR 684 will-moore 'Fix PKG_VERSION fix in publish_pypi.yml' - PR 682 will-moore 'Enable pre-release rc workflow with bumpversion and publish to pypi' - PR 679 will-moore 'Remove commit from gist demoUrl to load latest, with livingobjects URLs' - PR 677 dependabot[bot] 'Bump vite from 6.4.1 to 6.4.2' - PR 666 will-moore 'Standalone app' - PR 676 dependabot[bot] 'Bump picomatch' - PR 669 will-moore 'Standalone python script' - PR 662 will-moore 'Export script handles OME-zarr images' - PR 663 will-moore 'Zarr' - PR 674 dependabot[bot] 'Bump immutable from 4.1.0 to 4.3.8' - PR 675 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.2' - PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8' - PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues' - PR 667 Tom-TBT 'Label suggestion interface' - PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID' - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO' - PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0' - PR 664 Nirkan 'Handle many channels ' - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes' - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540' - PR 661 Rdornier 'Align to grid - check if panels are already in the grid' - PR 649 jburel 'Replace manual changelog by automated GH release step' - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout' - PR 637 Rdornier 'Fix scalebar position' - PR 600 Rdornier 'Label on rois' - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles' - PR 651 Rdornier 'More compliant align to grid' - PR 650 jburel 'Bump Python version' - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…' - PR 610 will-moore 'Add docs/contributing.rst' - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1' - PR 646 JensWendt 'fix word wrap of image names' - PR 612 will-moore 'Script version' - PR 630 will-moore 'Fix color and position for ALL new panel insets' - PR 616 Rdornier 'Fix labels around border' - PR 605 Tom-TBT 'Colorbar feature' - PR 638 Rdornier 'Fix arrow opacity' - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4' - PR 635 dependabot[bot] 'Bump esbuild and vite' - PR 623 will-moore 'Fix wrapping of label X button. see issues/622' - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 706 will-moore 'Figure repo migration' - PR 714 Rdornier 'Fix scalebar label' Conflicting PRs (not included): - PR 711 dependabot[bot] 'Bump source-map-js from 1.2.1 to 1.2.2' - PR 713 dependabot[bot] 'Bump dompurify from 3.4.13 to 3.4.17' Generated by OMERO-plugins-push#127 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/127/)' 2026-11-15 00:21:07,127 [ scc.git] DEBUG [detached HEAD 0f13aeca] merge master -Dorg -Ssuccess-only 2026-11-15 00:21:07,131 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:21:07,131 [ scc.repo] DEBUG ## PRs found: 2026-11-15 00:21:07,485 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/pulls HTTP/1.1" 200 None 2026-11-15 00:21:07,995 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/31 HTTP/1.1" 200 None 2026-11-15 00:21:07,996 [ scc.repo] DEBUG # ... Include label: dependencies 2026-11-15 00:21:08,639 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c?page=1 HTTP/1.1" 200 None 2026-11-15 00:21:09,138 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-15 00:21:09,848 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c?page=1 HTTP/1.1" 200 None 2026-11-15 00:21:10,313 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/statuses/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c?per_page=1 HTTP/1.1" 200 2 2026-11-15 00:21:10,314 [ scc.repo] DEBUG - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-11-15 00:21:10,827 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/18 HTTP/1.1" 200 None 2026-11-15 00:21:11,340 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/18/comments HTTP/1.1" 200 None 2026-11-15 00:21:11,988 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337?page=1 HTTP/1.1" 200 None 2026-11-15 00:21:12,494 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-15 00:21:13,011 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337?page=1 HTTP/1.1" 200 None 2026-11-15 00:21:13,463 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/statuses/45aed4d15501fa5a524a8b500af8d426f0f6b337?per_page=1 HTTP/1.1" 200 2 2026-11-15 00:21:13,463 [ scc.repo] DEBUG - PR 18 jburel 'default size z value' 2026-11-15 00:21:13,463 [ scc.repo] DEBUG ## Branches found: 2026-11-15 00:21:13,463 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage 2026-11-15 00:21:13,465 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:21:13,465 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:21:13,484 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-11-15 00:21:13,499 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-11-15 00:21:13,499 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-11-15 00:21:13,518 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-11-15 00:21:13,564 [ scc.git] DEBUG Already up to date. 2026-11-15 00:21:13,564 [ scc.git] DEBUG Calling 'git fetch origin pull/18/head' 2026-11-15 00:21:14,232 [ scc.git] DEBUG From https://github.com/ome/omero-fpbioimage 2026-11-15 00:21:14,232 [ scc.git] DEBUG * branch refs/pull/18/head -> FETCH_HEAD 2026-11-15 00:21:14,253 [ scc.git] DEBUG Calling 'git fetch origin pull/31/head' 2026-11-15 00:21:14,641 [ scc.git] DEBUG From https://github.com/ome/omero-fpbioimage 2026-11-15 00:21:14,641 [ scc.git] DEBUG * branch refs/pull/31/head -> FETCH_HEAD 2026-11-15 00:21:14,662 [ scc.git] DEBUG ## Unique users: [] 2026-11-15 00:21:14,662 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:21:14,662 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:21:14,674 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45aed4d15501fa5a524a8b500af8d426f0f6b337' 2026-11-15 00:21:14,696 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:21:14,708 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 18 (default size z value) 45aed4d15501fa5a524a8b500af8d426f0f6b337' 2026-11-15 00:21:14,904 [ scc.git] DEBUG Auto-merging omero_fpbioimage/views.py 2026-11-15 00:21:14,959 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-15 00:21:15,010 [ scc.git] DEBUG omero_fpbioimage/views.py | 2 ++ 2026-11-15 00:21:15,010 [ scc.git] DEBUG 1 file changed, 2 insertions(+) 2026-11-15 00:21:15,191 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:21:15,192 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c' 2026-11-15 00:21:15,218 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:21:15,231 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 31 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c' 2026-11-15 00:21:15,386 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-15 00:21:15,437 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-11-15 00:21:15,437 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-11-15 00:21:15,635 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:21:15,636 [ scc.git] DEBUG Calling 'git submodule update' 2026-11-15 00:21:15,743 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:21:15,743 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:21:15,756 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-15 00:21:15,856 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-11-15 00:21:15,899 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f5ce996c7d0> has no local changes 2026-11-15 00:21:15,899 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-fpbioimage Already up to date. Merged PRs: - PR 18 jburel 'default size z value' - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#127 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/127/)' 2026-11-15 00:21:16,073 [ scc.git] DEBUG [detached HEAD e444786] merge master -Dorg -Ssuccess-only 2026-11-15 00:21:16,074 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:21:16,074 [ scc.repo] DEBUG ## PRs found: 2026-11-15 00:21:16,400 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/pulls HTTP/1.1" 200 None 2026-11-15 00:21:16,944 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/119 HTTP/1.1" 200 None 2026-11-15 00:21:17,460 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/119/comments HTTP/1.1" 200 None 2026-11-15 00:21:18,009 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/9042541/issues/119/comments?page=2 HTTP/1.1" 200 None 2026-11-15 00:21:18,011 [ scc.repo] DEBUG # ... Include label: dependencies 2026-11-15 00:21:18,668 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062?page=1 HTTP/1.1" 200 None 2026-11-15 00:21:19,155 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-15 00:21:19,652 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062?page=1 HTTP/1.1" 200 None 2026-11-15 00:21:20,123 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/00257fc993a12b3f78a45db039e7bf2c8a406062?per_page=1 HTTP/1.1" 200 2 2026-11-15 00:21:20,123 [ scc.repo] DEBUG - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' 2026-11-15 00:21:20,639 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/118 HTTP/1.1" 200 None 2026-11-15 00:21:21,157 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/118/comments HTTP/1.1" 200 None 2026-11-15 00:21:21,648 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/9042541/issues/118/comments?page=2 HTTP/1.1" 200 None 2026-11-15 00:21:21,650 [ scc.repo] DEBUG # ... Include label: dependencies 2026-11-15 00:21:22,359 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d?page=1 HTTP/1.1" 200 None 2026-11-15 00:21:22,852 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-15 00:21:23,372 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d?page=1 HTTP/1.1" 200 None 2026-11-15 00:21:23,821 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/2bf34ddacb511c52e473a104fe2a1c00204bae1d?per_page=1 HTTP/1.1" 200 2 2026-11-15 00:21:23,821 [ scc.repo] DEBUG - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' 2026-11-15 00:21:24,344 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/117 HTTP/1.1" 200 None 2026-11-15 00:21:24,345 [ scc.repo] DEBUG # ... Include label: dependencies 2026-11-15 00:21:24,982 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c?page=1 HTTP/1.1" 200 None 2026-11-15 00:21:25,475 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-15 00:21:25,984 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c?page=1 HTTP/1.1" 200 None 2026-11-15 00:21:26,442 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/155d7ddab4f04c4a91bffc5736ba0741003c566c?per_page=1 HTTP/1.1" 200 2 2026-11-15 00:21:26,443 [ scc.repo] DEBUG - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' 2026-11-15 00:21:26,955 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/116 HTTP/1.1" 200 None 2026-11-15 00:21:26,956 [ scc.repo] DEBUG # ... Include label: dependencies 2026-11-15 00:21:27,581 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d?page=1 HTTP/1.1" 200 None 2026-11-15 00:21:28,057 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-15 00:21:28,556 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d?page=1 HTTP/1.1" 200 None 2026-11-15 00:21:29,007 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d?per_page=1 HTTP/1.1" 200 2 2026-11-15 00:21:29,007 [ scc.repo] DEBUG - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' 2026-11-15 00:21:29,521 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/115 HTTP/1.1" 200 None 2026-11-15 00:21:30,004 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/115/comments HTTP/1.1" 200 None 2026-11-15 00:21:30,005 [ scc.repo] DEBUG # ... Include label: dependencies 2026-11-15 00:21:30,639 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5?page=1 HTTP/1.1" 200 None 2026-11-15 00:21:31,126 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-15 00:21:31,642 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5?page=1 HTTP/1.1" 200 None 2026-11-15 00:21:32,105 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/25020d66a7df4ec3cad5967706bb7d13b1493bb5?per_page=1 HTTP/1.1" 200 2 2026-11-15 00:21:32,106 [ scc.repo] DEBUG - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' 2026-11-15 00:21:32,646 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/114 HTTP/1.1" 200 None 2026-11-15 00:21:32,647 [ scc.repo] DEBUG # ... Include label: dependencies 2026-11-15 00:21:33,272 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b?page=1 HTTP/1.1" 200 None 2026-11-15 00:21:33,753 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-15 00:21:34,248 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b?page=1 HTTP/1.1" 200 None 2026-11-15 00:21:34,703 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/cf75d259b2882000d6be73bc1c11c99c27aa439b?per_page=1 HTTP/1.1" 200 2 2026-11-15 00:21:34,703 [ scc.repo] DEBUG - PR 114 dependabot[bot] 'Bump tar and fsevents' 2026-11-15 00:21:35,208 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/113 HTTP/1.1" 200 None 2026-11-15 00:21:35,208 [ scc.repo] DEBUG # ... Include label: dependencies 2026-11-15 00:21:35,813 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e?page=1 HTTP/1.1" 200 None 2026-11-15 00:21:36,303 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-15 00:21:36,826 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e?page=1 HTTP/1.1" 200 None 2026-11-15 00:21:37,298 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/6a657d7a4e0bbfaa3464e851023f29c63db15d4e?per_page=1 HTTP/1.1" 200 2 2026-11-15 00:21:37,298 [ scc.repo] DEBUG - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' 2026-11-15 00:21:37,298 [ scc.repo] DEBUG ## Branches found: 2026-11-15 00:21:37,298 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery 2026-11-15 00:21:37,300 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:21:37,300 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:21:37,318 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-11-15 00:21:37,334 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-11-15 00:21:37,334 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-11-15 00:21:37,352 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-11-15 00:21:37,394 [ scc.git] DEBUG Already up to date. 2026-11-15 00:21:37,394 [ scc.git] DEBUG Calling 'git fetch origin pull/113/head' 2026-11-15 00:21:37,819 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-11-15 00:21:37,819 [ scc.git] DEBUG * branch refs/pull/113/head -> FETCH_HEAD 2026-11-15 00:21:37,840 [ scc.git] DEBUG Calling 'git fetch origin pull/114/head' 2026-11-15 00:21:38,244 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-11-15 00:21:38,244 [ scc.git] DEBUG * branch refs/pull/114/head -> FETCH_HEAD 2026-11-15 00:21:38,267 [ scc.git] DEBUG Calling 'git fetch origin pull/115/head' 2026-11-15 00:21:38,657 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-11-15 00:21:38,657 [ scc.git] DEBUG * branch refs/pull/115/head -> FETCH_HEAD 2026-11-15 00:21:38,679 [ scc.git] DEBUG Calling 'git fetch origin pull/116/head' 2026-11-15 00:21:39,086 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-11-15 00:21:39,086 [ scc.git] DEBUG * branch refs/pull/116/head -> FETCH_HEAD 2026-11-15 00:21:39,111 [ scc.git] DEBUG Calling 'git fetch origin pull/117/head' 2026-11-15 00:21:39,529 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-11-15 00:21:39,529 [ scc.git] DEBUG * branch refs/pull/117/head -> FETCH_HEAD 2026-11-15 00:21:39,549 [ scc.git] DEBUG Calling 'git fetch origin pull/118/head' 2026-11-15 00:21:39,951 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-11-15 00:21:39,951 [ scc.git] DEBUG * branch refs/pull/118/head -> FETCH_HEAD 2026-11-15 00:21:39,971 [ scc.git] DEBUG Calling 'git fetch origin pull/119/head' 2026-11-15 00:21:40,375 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-11-15 00:21:40,375 [ scc.git] DEBUG * branch refs/pull/119/head -> FETCH_HEAD 2026-11-15 00:21:40,396 [ scc.git] DEBUG ## Unique users: [] 2026-11-15 00:21:40,396 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:21:40,396 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:21:40,413 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6a657d7a4e0bbfaa3464e851023f29c63db15d4e' 2026-11-15 00:21:40,437 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:21:40,449 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 113 (Bump elliptic from 6.5.4 to 6.6.1) 6a657d7a4e0bbfaa3464e851023f29c63db15d4e' 2026-11-15 00:21:40,626 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-15 00:21:40,685 [ scc.git] DEBUG package-lock.json | 12 ++++++------ 2026-11-15 00:21:40,685 [ scc.git] DEBUG 1 file changed, 6 insertions(+), 6 deletions(-) 2026-11-15 00:21:40,904 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:21:40,904 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...cf75d259b2882000d6be73bc1c11c99c27aa439b' 2026-11-15 00:21:40,950 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:21:40,964 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 114 (Bump tar and fsevents) cf75d259b2882000d6be73bc1c11c99c27aa439b' 2026-11-15 00:21:41,110 [ scc.git] DEBUG Auto-merging package-lock.json 2026-11-15 00:21:41,167 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-15 00:21:41,226 [ scc.git] DEBUG package-lock.json | 625 +++--------------------------------------------------- 2026-11-15 00:21:41,226 [ scc.git] DEBUG 1 file changed, 29 insertions(+), 596 deletions(-) 2026-11-15 00:21:41,420 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:21:41,421 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25020d66a7df4ec3cad5967706bb7d13b1493bb5' 2026-11-15 00:21:41,447 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:21:41,459 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 115 (Bump micromatch, webpack-cli and webpack) 25020d66a7df4ec3cad5967706bb7d13b1493bb5' 2026-11-15 00:21:41,608 [ scc.git] DEBUG Auto-merging package-lock.json 2026-11-15 00:21:41,609 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2026-11-15 00:21:41,627 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-11-15 00:21:41,629 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-11-15 00:21:41,659 [ scc.git] DEBUG Calling 'git reset --hard a2ae3cf9d58a7e100fe9b21cbe8ebdfa4e93a591' 2026-11-15 00:21:41,801 [ scc.git] DEBUG HEAD is now at a2ae3cf merge master -Dorg -Ssuccess-only: PR 114 (Bump tar and fsevents) 2026-11-15 00:21:41,998 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:21:41,999 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 25020d66a7df4ec3cad5967706bb7d13b1493bb5' 2026-11-15 00:21:42,021 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd' 2026-11-15 00:21:42,039 [ scc.git] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' Conflicting PR. Removed from build [OMERO-plugins-push#127](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/127/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/127/consoleText) for more details. Possible conflicts: - PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - package-lock.json - PR #114 dependabot[bot] 'Bump tar and fsevents' - package-lock.json --conflicts 2026-11-15 00:21:42,049 [ scc.config] DEBUG Found github.token 2026-11-15 00:21:42,049 [ scc.git] DEBUG Not adding comment to issue #115, already --conflicts. 2026-11-15 00:21:42,049 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d' 2026-11-15 00:21:42,071 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:21:42,084 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 116 (Bump browserify-sign from 4.0.4 to 4.2.3) 42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d' 2026-11-15 00:21:42,232 [ scc.git] DEBUG Auto-merging package-lock.json 2026-11-15 00:21:42,290 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-15 00:21:42,342 [ scc.git] DEBUG package-lock.json | 119 +++++++++++++++++++++++++++++++++++++++++++++++++----- 2026-11-15 00:21:42,342 [ scc.git] DEBUG 1 file changed, 108 insertions(+), 11 deletions(-) 2026-11-15 00:21:42,528 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:21:42,529 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...155d7ddab4f04c4a91bffc5736ba0741003c566c' 2026-11-15 00:21:42,557 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:21:42,569 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6) 155d7ddab4f04c4a91bffc5736ba0741003c566c' 2026-11-15 00:21:42,718 [ scc.git] DEBUG Auto-merging package-lock.json 2026-11-15 00:21:42,768 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-15 00:21:42,824 [ scc.git] DEBUG package-lock.json | 6 +++--- 2026-11-15 00:21:42,824 [ scc.git] DEBUG 1 file changed, 3 insertions(+), 3 deletions(-) 2026-11-15 00:21:43,005 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:21:43,006 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2bf34ddacb511c52e473a104fe2a1c00204bae1d' 2026-11-15 00:21:43,033 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:21:43,046 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 118 (Bump braces, webpack-cli and webpack) 2bf34ddacb511c52e473a104fe2a1c00204bae1d' 2026-11-15 00:21:43,200 [ scc.git] DEBUG Auto-merging package-lock.json 2026-11-15 00:21:43,200 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2026-11-15 00:21:43,221 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-11-15 00:21:43,222 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-11-15 00:21:43,249 [ scc.git] DEBUG Calling 'git reset --hard 9a2ae7f4a58d57256a91a41efbe53ae1948bfe22' 2026-11-15 00:21:43,445 [ scc.git] DEBUG HEAD is now at 9a2ae7f merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6) 2026-11-15 00:21:43,635 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:21:43,636 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 2bf34ddacb511c52e473a104fe2a1c00204bae1d' 2026-11-15 00:21:43,659 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd' 2026-11-15 00:21:43,676 [ scc.git] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' Conflicting PR. Removed from build [OMERO-plugins-push#127](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/127/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/127/consoleText) for more details. Possible conflicts: - PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - package-lock.json - PR #114 dependabot[bot] 'Bump tar and fsevents' - package-lock.json - PR #115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - package-lock.json - PR #116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - package-lock.json - PR #117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' - package-lock.json --conflicts 2026-11-15 00:21:43,687 [ scc.config] DEBUG Found github.token 2026-11-15 00:21:43,687 [ scc.git] DEBUG Not adding comment to issue #118, already --conflicts. 2026-11-15 00:21:43,687 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...00257fc993a12b3f78a45db039e7bf2c8a406062' 2026-11-15 00:21:43,712 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:21:43,728 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 119 (Bump serialize-javascript and webpack) 00257fc993a12b3f78a45db039e7bf2c8a406062' 2026-11-15 00:21:43,903 [ scc.git] DEBUG Auto-merging package-lock.json 2026-11-15 00:21:43,903 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2026-11-15 00:21:43,929 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-11-15 00:21:43,930 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-11-15 00:21:43,958 [ scc.git] DEBUG Calling 'git reset --hard 9a2ae7f4a58d57256a91a41efbe53ae1948bfe22' 2026-11-15 00:21:44,086 [ scc.git] DEBUG HEAD is now at 9a2ae7f merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6) 2026-11-15 00:21:44,267 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:21:44,268 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 00257fc993a12b3f78a45db039e7bf2c8a406062' 2026-11-15 00:21:44,291 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd' 2026-11-15 00:21:44,308 [ scc.git] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' Conflicting PR. Removed from build [OMERO-plugins-push#127](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/127/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/127/consoleText) for more details. Possible conflicts: - PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - package-lock.json - PR #114 dependabot[bot] 'Bump tar and fsevents' - package-lock.json - PR #115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - package-lock.json - PR #116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - package-lock.json - PR #117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' - package-lock.json - PR #118 dependabot[bot] 'Bump braces, webpack-cli and webpack' - package-lock.json --conflicts 2026-11-15 00:21:44,318 [ scc.config] DEBUG Found github.token 2026-11-15 00:21:44,319 [ scc.git] DEBUG Not adding comment to issue #119, already --conflicts. 2026-11-15 00:21:44,319 [ scc.git] DEBUG Calling 'git submodule update' 2026-11-15 00:21:44,431 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:21:44,431 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:21:44,442 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-15 00:21:44,543 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-11-15 00:21:44,604 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f5ce97af1d0> has no local changes 2026-11-15 00:21:44,604 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-gallery Already up to date. Merged PRs: - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - PR 114 dependabot[bot] 'Bump tar and fsevents' - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' Conflicting PRs (not included): - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' Generated by OMERO-plugins-push#127 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/127/)' 2026-11-15 00:21:44,762 [ scc.git] DEBUG [detached HEAD 71f874a] merge master -Dorg -Ssuccess-only 2026-11-15 00:21:44,764 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:21:44,764 [ scc.repo] DEBUG ## PRs found: 2026-11-15 00:21:45,094 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls HTTP/1.1" 200 None 2026-11-15 00:21:45,605 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/588 HTTP/1.1" 200 None 2026-11-15 00:21:46,281 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/672f3b9cff4382a37a872fa39b487ae31bc97f60?page=1 HTTP/1.1" 200 None 2026-11-15 00:21:46,818 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/672f3b9cff4382a37a872fa39b487ae31bc97f60/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-15 00:21:47,328 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/672f3b9cff4382a37a872fa39b487ae31bc97f60/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-11-15 00:21:47,805 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/672f3b9cff4382a37a872fa39b487ae31bc97f60?page=1 HTTP/1.1" 200 None 2026-11-15 00:21:48,266 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/672f3b9cff4382a37a872fa39b487ae31bc97f60?per_page=1 HTTP/1.1" 200 2 2026-11-15 00:21:48,266 [ scc.repo] DEBUG - PR 588 will-moore 'Only show Tag link button if not a Tagset' 2026-11-15 00:21:48,765 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/587 HTTP/1.1" 200 None 2026-11-15 00:21:49,242 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/587/comments HTTP/1.1" 200 None 2026-11-15 00:21:49,859 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/e4e21b32f4bd1c6d30e3fb4adb19d1ba926efb6c?page=1 HTTP/1.1" 200 None 2026-11-15 00:21:50,397 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/e4e21b32f4bd1c6d30e3fb4adb19d1ba926efb6c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-15 00:21:50,921 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/e4e21b32f4bd1c6d30e3fb4adb19d1ba926efb6c/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-11-15 00:21:51,391 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/e4e21b32f4bd1c6d30e3fb4adb19d1ba926efb6c?page=1 HTTP/1.1" 200 None 2026-11-15 00:21:51,855 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/e4e21b32f4bd1c6d30e3fb4adb19d1ba926efb6c?per_page=1 HTTP/1.1" 200 2 2026-11-15 00:21:51,856 [ scc.repo] DEBUG - PR 587 will-moore 'Roi columns add remove' 2026-11-15 00:21:52,350 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/532 HTTP/1.1" 200 None 2026-11-15 00:21:52,861 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/532/comments HTTP/1.1" 200 None 2026-11-15 00:21:53,428 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/fb88f3a09446141b1d1bc276c87ea6a832ff1b3a?page=1 HTTP/1.1" 200 None 2026-11-15 00:21:53,960 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/fb88f3a09446141b1d1bc276c87ea6a832ff1b3a/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-15 00:21:54,484 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/fb88f3a09446141b1d1bc276c87ea6a832ff1b3a/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-11-15 00:21:55,002 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/fb88f3a09446141b1d1bc276c87ea6a832ff1b3a?page=1 HTTP/1.1" 200 None 2026-11-15 00:21:55,456 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/fb88f3a09446141b1d1bc276c87ea6a832ff1b3a?per_page=1 HTTP/1.1" 200 2 2026-11-15 00:21:55,457 [ scc.repo] DEBUG - PR 532 will-moore 'Zarr layers' 2026-11-15 00:21:55,971 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/471 HTTP/1.1" 200 None 2026-11-15 00:21:56,475 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/471/comments HTTP/1.1" 200 None 2026-11-15 00:21:57,090 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9?page=1 HTTP/1.1" 200 None 2026-11-15 00:21:57,569 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-15 00:21:58,067 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9?page=1 HTTP/1.1" 200 None 2026-11-15 00:21:58,537 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/448d042a58da05a522531356cc58c1e35b5744d9?per_page=1 HTTP/1.1" 200 2 2026-11-15 00:21:58,538 [ scc.repo] DEBUG - PR 471 will-moore 'Z projection disabled tooltip' 2026-11-15 00:21:58,538 [ scc.repo] DEBUG ## Branches found: 2026-11-15 00:21:58,538 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer 2026-11-15 00:21:58,539 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:21:58,539 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:21:58,557 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-11-15 00:21:58,577 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-11-15 00:21:58,577 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-11-15 00:22:00,094 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-11-15 00:22:00,892 [ scc.git] DEBUG Updating 7a798cee..106ca787 2026-11-15 00:22:01,180 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/586 HTTP/1.1" 200 25183 2026-11-15 00:22:01,725 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/585 HTTP/1.1" 200 24043 2026-11-15 00:22:02,652 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/584 HTTP/1.1" 200 22777 2026-11-15 00:22:03,269 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/583 HTTP/1.1" 200 20550 2026-11-15 00:22:03,800 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/582 HTTP/1.1" 200 27242 2026-11-15 00:22:04,304 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/581 HTTP/1.1" 200 23668 2026-11-15 00:22:04,832 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/580 HTTP/1.1" 200 21577 2026-11-15 00:22:05,473 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/578 HTTP/1.1" 200 30778 2026-11-15 00:22:05,983 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/577 HTTP/1.1" 200 21922 2026-11-15 00:22:06,505 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/576 HTTP/1.1" 200 26989 2026-11-15 00:22:07,012 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/575 HTTP/1.1" 200 31838 2026-11-15 00:22:07,561 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/497 HTTP/1.1" 200 18610 2026-11-15 00:22:08,062 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/574 HTTP/1.1" 200 18915 2026-11-15 00:22:08,568 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/573 HTTP/1.1" 200 40387 2026-11-15 00:22:09,112 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/572 HTTP/1.1" 200 21268 2026-11-15 00:22:09,653 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/571 HTTP/1.1" 200 20119 2026-11-15 00:22:10,167 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/570 HTTP/1.1" 200 22721 2026-11-15 00:22:10,897 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/568 HTTP/1.1" 200 31503 2026-11-15 00:22:11,504 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/566 HTTP/1.1" 200 23671 2026-11-15 00:22:12,034 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/565 HTTP/1.1" 200 27844 2026-11-15 00:22:12,571 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/564 HTTP/1.1" 200 23009 2026-11-15 00:22:13,103 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/567 HTTP/1.1" 200 17448 2026-11-15 00:22:13,637 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/562 HTTP/1.1" 200 17313 2026-11-15 00:22:14,148 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/563 HTTP/1.1" 200 17856 2026-11-15 00:22:14,738 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/559 HTTP/1.1" 200 34408 2026-11-15 00:22:15,239 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/558 HTTP/1.1" 200 19930 2026-11-15 00:22:15,794 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/557 HTTP/1.1" 200 21992 2026-11-15 00:22:16,393 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/541 HTTP/1.1" 200 21749 2026-11-15 00:22:16,907 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/556 HTTP/1.1" 200 38815 2026-11-15 00:22:17,443 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/554 HTTP/1.1" 200 21992 2026-11-15 00:22:17,980 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/553 HTTP/1.1" 200 27576 2026-11-15 00:22:18,497 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/552 HTTP/1.1" 200 17806 2026-11-15 00:22:19,007 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/551 HTTP/1.1" 200 21324 2026-11-15 00:22:19,521 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/550 HTTP/1.1" 200 24859 2026-11-15 00:22:20,034 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/549 HTTP/1.1" 200 26186 2026-11-15 00:22:20,546 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/548 HTTP/1.1" 200 20679 2026-11-15 00:22:21,057 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/547 HTTP/1.1" 200 20899 2026-11-15 00:22:21,558 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/540 HTTP/1.1" 200 25953 2026-11-15 00:22:22,060 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/539 HTTP/1.1" 200 26423 2026-11-15 00:22:22,573 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/537 HTTP/1.1" 200 21572 2026-11-15 00:22:23,073 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/535 HTTP/1.1" 200 33916 2026-11-15 00:22:23,680 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/527 HTTP/1.1" 200 18272 2026-11-15 00:22:24,260 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/534 HTTP/1.1" 200 17039 2026-11-15 00:22:24,775 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/533 HTTP/1.1" 200 28424 2026-11-15 00:22:25,272 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/530 HTTP/1.1" 200 30535 2026-11-15 00:22:25,765 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/528 HTTP/1.1" 200 26267 2026-11-15 00:22:26,304 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/529 HTTP/1.1" 200 18609 2026-11-15 00:22:26,834 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/526 HTTP/1.1" 200 17027 2026-11-15 00:22:27,448 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/525 HTTP/1.1" 200 26297 2026-11-15 00:22:27,954 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/524 HTTP/1.1" 200 21086 2026-11-15 00:22:28,553 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/523 HTTP/1.1" 200 20967 2026-11-15 00:22:29,063 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/522 HTTP/1.1" 200 26824 2026-11-15 00:22:29,562 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/521 HTTP/1.1" 200 20965 2026-11-15 00:22:30,092 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/520 HTTP/1.1" 200 24905 2026-11-15 00:22:30,618 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/519 HTTP/1.1" 200 23636 2026-11-15 00:22:31,147 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/518 HTTP/1.1" 200 20250 2026-11-15 00:22:31,700 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/514 HTTP/1.1" 200 17590 2026-11-15 00:22:32,449 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/513 HTTP/1.1" 200 16384 2026-11-15 00:22:33,104 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/512 HTTP/1.1" 200 16415 2026-11-15 00:22:33,631 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/465 HTTP/1.1" 200 18246 2026-11-15 00:22:34,201 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/517 HTTP/1.1" 200 17161 2026-11-15 00:22:34,698 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/516 HTTP/1.1" 200 22347 2026-11-15 00:22:35,260 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/510 HTTP/1.1" 200 16620 2026-11-15 00:22:35,814 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/506 HTTP/1.1" 200 16688 2026-11-15 00:22:35,815 [ scc.git] DEBUG Calling 'git fetch origin pull/471/head' 2026-11-15 00:22:36,557 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-11-15 00:22:36,557 [ scc.git] DEBUG * branch refs/pull/471/head -> FETCH_HEAD 2026-11-15 00:22:36,580 [ scc.git] DEBUG Calling 'git fetch origin pull/532/head' 2026-11-15 00:22:37,126 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-11-15 00:22:37,126 [ scc.git] DEBUG * branch refs/pull/532/head -> FETCH_HEAD 2026-11-15 00:22:37,150 [ scc.git] DEBUG Calling 'git fetch origin pull/587/head' 2026-11-15 00:22:37,824 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-11-15 00:22:37,824 [ scc.git] DEBUG * branch refs/pull/587/head -> FETCH_HEAD 2026-11-15 00:22:37,846 [ scc.git] DEBUG Calling 'git fetch origin pull/588/head' 2026-11-15 00:22:38,399 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-11-15 00:22:38,400 [ scc.git] DEBUG * branch refs/pull/588/head -> FETCH_HEAD 2026-11-15 00:22:38,422 [ scc.git] DEBUG ## Unique users: [] 2026-11-15 00:22:38,422 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:22:38,422 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:22:38,433 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...448d042a58da05a522531356cc58c1e35b5744d9' 2026-11-15 00:22:38,514 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:22:38,525 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 471 (Z projection disabled tooltip) 448d042a58da05a522531356cc58c1e35b5744d9' 2026-11-15 00:22:38,832 [ scc.git] DEBUG Auto-merging src/controls/dimension-slider.js 2026-11-15 00:22:38,885 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-15 00:22:38,949 [ scc.git] DEBUG src/controls/dimension-slider.html | 2 +- 2026-11-15 00:22:38,949 [ scc.git] DEBUG src/controls/dimension-slider.js | 20 ++++++++++++++++++++ 2026-11-15 00:22:38,949 [ scc.git] DEBUG 2 files changed, 21 insertions(+), 1 deletion(-) 2026-11-15 00:22:39,146 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:22:39,147 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...fb88f3a09446141b1d1bc276c87ea6a832ff1b3a' 2026-11-15 00:22:39,248 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:22:39,261 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 532 (Zarr layers) fb88f3a09446141b1d1bc276c87ea6a832ff1b3a' 2026-11-15 00:22:40,081 [ scc.git] DEBUG Auto-merging css/app.css 2026-11-15 00:22:40,081 [ scc.git] DEBUG CONFLICT (content): Merge conflict in css/app.css 2026-11-15 00:22:40,081 [ scc.git] DEBUG Auto-merging package-lock.json 2026-11-15 00:22:40,081 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2026-11-15 00:22:40,081 [ scc.git] DEBUG Auto-merging package.json 2026-11-15 00:22:40,081 [ scc.git] DEBUG Auto-merging src/app/context.js 2026-11-15 00:22:40,081 [ scc.git] DEBUG Auto-merging src/events/events.js 2026-11-15 00:22:40,081 [ scc.git] DEBUG Auto-merging src/model/image_config.js 2026-11-15 00:22:40,081 [ scc.git] DEBUG Auto-merging src/viewers/viewer/Viewer.js 2026-11-15 00:22:40,081 [ scc.git] DEBUG Auto-merging src/viewers/viewer/source/Image.js 2026-11-15 00:22:40,081 [ scc.git] DEBUG Auto-merging webpack.dev.config.js 2026-11-15 00:22:40,102 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-11-15 00:22:40,106 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-11-15 00:22:40,158 [ scc.git] DEBUG Calling 'git reset --hard cf0a294eb55b1f1d7619e179a7dd78e79177baac' 2026-11-15 00:22:40,494 [ scc.git] DEBUG HEAD is now at cf0a294e merge master -Dorg -Ssuccess-only: PR 471 (Z projection disabled tooltip) 2026-11-15 00:22:40,692 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:22:40,693 [ scc.git] DEBUG Calling 'git merge-base 106ca78705971983e6312360c46c4b41f4bf39d7 fb88f3a09446141b1d1bc276c87ea6a832ff1b3a' 2026-11-15 00:22:40,758 [ scc.git] DEBUG Calling 'git diff --name-only 0b7eaf71f7e3f5c7289fab4bf857094bdadce1e4..106ca78705971983e6312360c46c4b41f4bf39d7' 2026-11-15 00:22:40,789 [ scc.git] INFO - PR 532 will-moore 'Zarr layers' Conflicting PR. Removed from build [OMERO-plugins-push#127](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/127/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/127/consoleText) for more details. Possible conflicts: - Upstream changes - css/app.css - package-lock.json --conflicts 2026-11-15 00:22:40,800 [ scc.config] DEBUG Found github.token 2026-11-15 00:22:40,801 [ scc.git] DEBUG Not adding comment to issue #532, already --conflicts. 2026-11-15 00:22:40,801 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...e4e21b32f4bd1c6d30e3fb4adb19d1ba926efb6c' 2026-11-15 00:22:40,885 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:22:40,898 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 587 (Roi columns add remove) e4e21b32f4bd1c6d30e3fb4adb19d1ba926efb6c' 2026-11-15 00:22:41,270 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-15 00:22:41,340 [ scc.git] DEBUG css/app.css | 23 ++--- 2026-11-15 00:22:41,340 [ scc.git] DEBUG src/index-dev.html | 2 +- 2026-11-15 00:22:41,340 [ scc.git] DEBUG src/regions/regions-list.html | 205 ++++++++++++++++++++++++------------------ 2026-11-15 00:22:41,340 [ scc.git] DEBUG src/regions/regions-list.js | 81 ++++++++++++++--- 2026-11-15 00:22:41,340 [ scc.git] DEBUG 4 files changed, 195 insertions(+), 116 deletions(-) 2026-11-15 00:22:41,520 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:22:41,520 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...672f3b9cff4382a37a872fa39b487ae31bc97f60' 2026-11-15 00:22:41,632 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:22:41,645 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 588 (Only show Tag link button if not a Tagset) 672f3b9cff4382a37a872fa39b487ae31bc97f60' 2026-11-15 00:22:41,912 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-15 00:22:41,981 [ scc.git] DEBUG src/regions/regions-tags.html | 3 ++- 2026-11-15 00:22:41,981 [ scc.git] DEBUG 1 file changed, 2 insertions(+), 1 deletion(-) 2026-11-15 00:22:42,156 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:22:42,157 [ scc.git] DEBUG Calling 'git submodule update' 2026-11-15 00:22:42,284 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:22:42,284 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:22:42,297 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-15 00:22:42,404 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-11-15 00:22:42,523 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f5ce9850d90> has no local changes 2026-11-15 00:22:42,523 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-iviewer Excluded PRs: - PR 420 will-moore 'Add release process to README' (exclude comment) - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment) Updating 7a798cee..106ca787 Previously merged: - PR 586 dependabot[bot] 'Bump serialize-javascript from 7.1.2 to 7.1.4' - PR 585 dependabot[bot] 'Bump body-parser' - PR 584 dependabot[bot] 'Bump qs from 6.16.0 to 6.16.2' - PR 583 dependabot[bot] 'Bump follow-redirects from 1.16.0 to 1.16.3' - PR 582 dependabot[bot] 'Bump postcss-selector-parser from 6.0.13 to 6.1.5' - PR 581 dependabot[bot] 'Bump fast-uri from 3.1.8 to 3.1.9' - PR 580 dependabot[bot] 'Bump launch-editor from 2.14.1 to 2.14.2' - PR 578 dependabot[bot] 'Bump compression from 1.8.1 to 1.8.2' - PR 577 dependabot[bot] 'Bump source-map-js from 1.2.1 to 1.2.2' - PR 576 dependabot[bot] 'Bump shell-quote from 1.10.0 to 1.12.0' - PR 575 dependabot[bot] 'Bump proxy-addr from 2.0.7 to 2.0.8' - PR 497 will-moore 'ROI Tags' - PR 574 dependabot[bot] 'Bump minimatch from 3.1.2 to 3.1.5' - PR 573 dependabot[bot] 'Bump serialize-javascript and mocha' - PR 572 dependabot[bot] 'Bump brace-expansion from 1.1.13 to 1.1.21' - PR 571 dependabot[bot] 'Bump fast-uri from 3.1.7 to 3.1.8' - PR 570 dependabot[bot] 'Bump engine.io from 6.6.9 to 6.6.11' - PR 568 dependabot[bot] 'Bump webpack-dev-middleware from 8.1.0 to 8.3.0' - PR 566 dependabot[bot] 'Bump js-yaml from 4.1.0 to 4.3.2' - PR 565 dependabot[bot] 'Bump qs and body-parser' - PR 564 dependabot[bot] 'Bump fast-uri from 3.1.5 to 3.1.7' - PR 567 will-moore 'Basic fix of prev/next shapes when shapes sorted' - PR 562 will-moore 'Keyboard select roi' - PR 563 will-moore 'Use POST data for imgRdef save' - PR 559 dependabot[bot] 'Bump js-yaml and mocha' - PR 558 dependabot[bot] 'Bump fast-uri from 3.1.4 to 3.1.5' - PR 557 dependabot[bot] 'Bump socket.io-parser from 4.2.6 to 4.2.7' - PR 541 will-moore 'Only add channel to tile request string if active' - PR 556 dependabot[bot] 'Bump webpack-dev-server from 5.2.6 to 6.0.0' - PR 554 dependabot[bot] 'Bump http-proxy-middleware from 2.0.9 to 2.0.10' - PR 553 dependabot[bot] 'Bump postcss from 8.5.10 to 8.5.25' - PR 552 dependabot[bot] 'Bump tmp from 0.2.6 to 0.2.7' - PR 551 dependabot[bot] 'Bump body-parser from 1.20.5 to 1.20.6' - PR 550 dependabot[bot] 'Bump webpack-dev-server from 5.2.4 to 5.2.6' - PR 549 dependabot[bot] 'Bump shell-quote from 1.8.4 to 1.10.0' - PR 548 dependabot[bot] 'Bump fast-uri from 3.1.2 to 3.1.4' - PR 547 dependabot[bot] 'Bump websocket-driver from 0.7.4 to 0.7.5' - PR 540 dependabot[bot] 'Bump @babel/core from 7.5.4 to 7.29.6' - PR 539 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter' - PR 537 dependabot[bot] 'Bump launch-editor from 2.13.2 to 2.14.1' - PR 535 dependabot[bot] 'Bump tmp and eslint' - PR 527 PollenGeo 'Add grid overlay feature with configurable cell size and labels' - PR 534 will-moore 'Fix settings.md link to master branch. Move iviewer redirect settings' - PR 533 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter' - PR 530 dependabot[bot] 'Bump webpack-dev-server from 4.13.2 to 5.2.4' - PR 528 dependabot[bot] 'Bump fast-uri from 3.1.0 to 3.1.2' - PR 529 will-moore 'Image id and roi id initial params' - PR 526 will-moore 'Add keyboard handling for Left, Right, Up, Down Arrows to pan' - PR 525 dependabot[bot] 'Bump postcss from 8.4.31 to 8.5.10' - PR 524 dependabot[bot] 'Bump protocol-buffers-schema from 3.3.2 to 3.6.1' - PR 523 dependabot[bot] 'Bump follow-redirects from 1.15.6 to 1.16.0' - PR 522 dependabot[bot] 'Bump lodash from 4.17.21 to 4.18.1' - PR 521 dependabot[bot] 'Bump brace-expansion from 1.1.11 to 1.1.13' - PR 520 dependabot[bot] 'Bump node-forge from 1.3.1 to 1.4.0' - PR 519 dependabot[bot] 'Bump picomatch from 2.3.1 to 2.3.2' - PR 518 dependabot[bot] 'Bump ajv from 6.12.6 to 6.14.0' - PR 514 Tom-TBT 'Fix where interpolate_pixels server config is read from' - PR 513 jburel 'Bump Python version' - PR 512 jburel 'Replace manual changelog by automated GH release step' - PR 465 will-moore 'Save as Figure' - PR 517 will-moore 'Fix roi link permissions' - PR 516 dependabot[bot] 'Bump socket.io-parser from 4.2.4 to 4.2.6' - PR 510 joshmoore 'Re-enable omero-test-infra' - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 471 will-moore 'Z projection disabled tooltip' - PR 587 will-moore 'Roi columns add remove' - PR 588 will-moore 'Only show Tag link button if not a Tagset' Conflicting PRs (not included): - PR 532 will-moore 'Zarr layers' Generated by OMERO-plugins-push#127 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/127/)' 2026-11-15 00:22:42,666 [ scc.git] DEBUG [detached HEAD 4f661125] merge master -Dorg -Ssuccess-only 2026-11-15 00:22:42,670 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:22:42,670 [ scc.repo] DEBUG ## PRs found: 2026-11-15 00:22:43,063 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/pulls HTTP/1.1" 200 None 2026-11-15 00:22:43,801 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/98 HTTP/1.1" 200 None 2026-11-15 00:22:44,301 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/98/comments HTTP/1.1" 200 None 2026-11-15 00:22:44,302 [ scc.repo] DEBUG # ... Include label: include 2026-11-15 00:22:44,915 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1fa070ad0afa0f3944fa2513d38db6da1f5bc783?page=1 HTTP/1.1" 200 None 2026-11-15 00:22:45,389 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1fa070ad0afa0f3944fa2513d38db6da1f5bc783/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-15 00:22:46,067 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1fa070ad0afa0f3944fa2513d38db6da1f5bc783?page=1 HTTP/1.1" 200 None 2026-11-15 00:22:46,583 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1fa070ad0afa0f3944fa2513d38db6da1f5bc783?per_page=1 HTTP/1.1" 200 2 2026-11-15 00:22:46,584 [ scc.repo] DEBUG - PR 98 JoshuaFortriede 'use namespace with keys' 2026-11-15 00:22:47,112 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/97 HTTP/1.1" 200 None 2026-11-15 00:22:47,600 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/97/comments HTTP/1.1" 200 None 2026-11-15 00:22:47,601 [ scc.repo] DEBUG # ... Include label: include 2026-11-15 00:22:48,210 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/3854f1cfa0cbe79675dad16ad34fce109524eb28?page=1 HTTP/1.1" 200 None 2026-11-15 00:22:48,704 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/3854f1cfa0cbe79675dad16ad34fce109524eb28/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-15 00:22:49,169 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/3854f1cfa0cbe79675dad16ad34fce109524eb28?page=1 HTTP/1.1" 200 None 2026-11-15 00:22:49,630 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/3854f1cfa0cbe79675dad16ad34fce109524eb28?per_page=1 HTTP/1.1" 200 2 2026-11-15 00:22:49,631 [ scc.repo] DEBUG - PR 97 JoshuaFortriede 'BUG Fix: use HTML value to replace HTML' 2026-11-15 00:22:50,193 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95 HTTP/1.1" 200 None 2026-11-15 00:22:50,710 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95/comments HTTP/1.1" 200 None 2026-11-15 00:22:50,711 [ scc.repo] DEBUG # ... Include label: dependencies 2026-11-15 00:22:51,332 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99?page=1 HTTP/1.1" 200 None 2026-11-15 00:22:51,815 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-15 00:22:52,310 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99?page=1 HTTP/1.1" 200 None 2026-11-15 00:22:52,763 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/38cc352a088eaedfaa2dd8874c4f200f98f41a99?per_page=1 HTTP/1.1" 200 2 2026-11-15 00:22:52,764 [ scc.repo] DEBUG - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-11-15 00:22:53,276 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/94 HTTP/1.1" 200 None 2026-11-15 00:22:54,013 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d?page=1 HTTP/1.1" 200 None 2026-11-15 00:22:54,497 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-15 00:22:54,962 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d?page=1 HTTP/1.1" 200 None 2026-11-15 00:22:55,417 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1896cfebc876f939f8d83bd1cf56b8584ff2921d?per_page=1 HTTP/1.1" 200 2 2026-11-15 00:22:55,417 [ scc.repo] DEBUG - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-11-15 00:22:55,922 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None 2026-11-15 00:22:56,433 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None 2026-11-15 00:22:56,435 [ scc.repo] DEBUG ## Branches found: 2026-11-15 00:22:56,435 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr 2026-11-15 00:22:56,436 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:22:56,436 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:22:56,452 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-11-15 00:22:56,468 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-11-15 00:22:56,469 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-11-15 00:22:56,487 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-11-15 00:22:56,530 [ scc.git] DEBUG Already up to date. 2026-11-15 00:22:56,530 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head' 2026-11-15 00:22:56,957 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2026-11-15 00:22:56,957 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD 2026-11-15 00:22:56,980 [ scc.git] DEBUG Calling 'git fetch origin pull/95/head' 2026-11-15 00:22:57,395 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2026-11-15 00:22:57,395 [ scc.git] DEBUG * branch refs/pull/95/head -> FETCH_HEAD 2026-11-15 00:22:57,415 [ scc.git] DEBUG Calling 'git fetch origin pull/97/head' 2026-11-15 00:22:57,888 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2026-11-15 00:22:57,888 [ scc.git] DEBUG * branch refs/pull/97/head -> FETCH_HEAD 2026-11-15 00:22:57,908 [ scc.git] DEBUG Calling 'git fetch origin pull/98/head' 2026-11-15 00:22:58,357 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2026-11-15 00:22:58,357 [ scc.git] DEBUG * branch refs/pull/98/head -> FETCH_HEAD 2026-11-15 00:22:58,377 [ scc.git] DEBUG ## Unique users: [] 2026-11-15 00:22:58,378 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:22:58,378 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:22:58,390 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d' 2026-11-15 00:22:58,416 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:22:58,427 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d' 2026-11-15 00:22:58,586 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-15 00:22:58,647 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-11-15 00:22:58,647 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-11-15 00:22:58,834 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:22:58,835 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38cc352a088eaedfaa2dd8874c4f200f98f41a99' 2026-11-15 00:22:58,882 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:22:58,904 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 95 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 38cc352a088eaedfaa2dd8874c4f200f98f41a99' 2026-11-15 00:22:59,065 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml 2026-11-15 00:22:59,065 [ scc.git] DEBUG CONFLICT (content): Merge conflict in .github/workflows/publish_pypi.yml 2026-11-15 00:22:59,084 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-11-15 00:22:59,086 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-11-15 00:22:59,108 [ scc.git] DEBUG Calling 'git reset --hard 6b13dcd2f3adfaad34fb3d36a96977d84f442a5c' 2026-11-15 00:22:59,217 [ scc.git] DEBUG HEAD is now at 6b13dcd merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 2026-11-15 00:22:59,413 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:22:59,413 [ scc.git] DEBUG Calling 'git merge-base 0a557da89145e65db313c1721a26cb43e490dd8a 38cc352a088eaedfaa2dd8874c4f200f98f41a99' 2026-11-15 00:22:59,434 [ scc.git] DEBUG Calling 'git diff --name-only 0a557da89145e65db313c1721a26cb43e490dd8a..0a557da89145e65db313c1721a26cb43e490dd8a' 2026-11-15 00:22:59,451 [ scc.git] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Conflicting PR. Removed from build [OMERO-plugins-push#127](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/127/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/127/consoleText) for more details. Possible conflicts: - PR #94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' - .github/workflows/publish_pypi.yml --conflicts 2026-11-15 00:22:59,461 [ scc.config] DEBUG Found github.token 2026-11-15 00:22:59,461 [ scc.git] DEBUG Not adding comment to issue #95, already --conflicts. 2026-11-15 00:22:59,461 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3854f1cfa0cbe79675dad16ad34fce109524eb28' 2026-11-15 00:22:59,492 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:22:59,503 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 97 (BUG Fix: use HTML value to replace HTML) 3854f1cfa0cbe79675dad16ad34fce109524eb28' 2026-11-15 00:22:59,668 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-15 00:22:59,724 [ scc.git] DEBUG .../templates/webclient/data/includes/right_plugin.general.js.html | 4 +++- 2026-11-15 00:22:59,724 [ scc.git] DEBUG 1 file changed, 3 insertions(+), 1 deletion(-) 2026-11-15 00:22:59,905 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:22:59,906 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1fa070ad0afa0f3944fa2513d38db6da1f5bc783' 2026-11-15 00:22:59,944 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:22:59,957 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 98 (use namespace with keys) 1fa070ad0afa0f3944fa2513d38db6da1f5bc783' 2026-11-15 00:23:00,144 [ scc.git] DEBUG Auto-merging omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html 2026-11-15 00:23:00,199 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-15 00:23:00,266 [ scc.git] DEBUG .../webclient/data/includes/right_plugin.general.js.html | 11 ++++++++--- 2026-11-15 00:23:00,266 [ scc.git] DEBUG 1 file changed, 8 insertions(+), 3 deletions(-) 2026-11-15 00:23:00,460 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:23:00,460 [ scc.git] DEBUG Calling 'git submodule update' 2026-11-15 00:23:00,573 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:23:00,573 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:23:00,587 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-15 00:23:00,688 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-11-15 00:23:00,742 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f5ce97d1a10> has no local changes 2026-11-15 00:23:00,742 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-mapr Excluded PRs: - PR 79 will-moore 'Right panel title' (exclude comment) - PR 74 will-moore 'mapr extension of webclient' (exclude comment) Already up to date. Merged PRs: - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' - PR 97 JoshuaFortriede 'BUG Fix: use HTML value to replace HTML' - PR 98 JoshuaFortriede 'use namespace with keys' Conflicting PRs (not included): - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#127 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/127/)' 2026-11-15 00:23:00,894 [ scc.git] DEBUG [detached HEAD 367f43f] merge master -Dorg -Ssuccess-only 2026-11-15 00:23:00,896 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:23:00,897 [ scc.repo] DEBUG ## PRs found: 2026-11-15 00:23:01,245 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None 2026-11-15 00:23:01,729 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/92 HTTP/1.1" 200 None 2026-11-15 00:23:02,240 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/92/comments HTTP/1.1" 200 None 2026-11-15 00:23:02,861 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f?page=1 HTTP/1.1" 200 None 2026-11-15 00:23:03,361 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-15 00:23:03,852 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f?page=1 HTTP/1.1" 200 None 2026-11-15 00:23:04,351 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/64d33da6022f537d572d4f69a5cec86377b6e78f?per_page=1 HTTP/1.1" 200 2 2026-11-15 00:23:04,352 [ scc.repo] DEBUG - PR 92 dominikl 'add resolve_rois to projectwrapper' 2026-11-15 00:23:04,912 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None 2026-11-15 00:23:05,436 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None 2026-11-15 00:23:05,994 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7?page=1 HTTP/1.1" 200 None 2026-11-15 00:23:06,473 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-15 00:23:06,975 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7?page=1 HTTP/1.1" 200 None 2026-11-15 00:23:07,437 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2 2026-11-15 00:23:07,437 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate' 2026-11-15 00:23:07,437 [ scc.repo] DEBUG ## Branches found: 2026-11-15 00:23:07,437 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata 2026-11-15 00:23:07,438 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:23:07,438 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:23:07,455 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-11-15 00:23:07,473 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-11-15 00:23:07,473 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-11-15 00:23:07,621 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-11-15 00:23:07,853 [ scc.git] DEBUG Updating 3cd120c..6a653e4 2026-11-15 00:23:08,268 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/95 HTTP/1.1" 200 16963 2026-11-15 00:23:08,811 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/94 HTTP/1.1" 200 17070 2026-11-15 00:23:09,406 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 17048 2026-11-15 00:23:09,408 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head' 2026-11-15 00:23:10,212 [ scc.git] DEBUG From https://github.com/ome/omero-metadata 2026-11-15 00:23:10,212 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD 2026-11-15 00:23:10,237 [ scc.git] DEBUG Calling 'git fetch origin pull/92/head' 2026-11-15 00:23:10,693 [ scc.git] DEBUG From https://github.com/ome/omero-metadata 2026-11-15 00:23:10,693 [ scc.git] DEBUG * branch refs/pull/92/head -> FETCH_HEAD 2026-11-15 00:23:10,716 [ scc.git] DEBUG ## Unique users: [] 2026-11-15 00:23:10,716 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:23:10,716 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:23:10,728 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7' 2026-11-15 00:23:10,785 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:23:10,798 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7' 2026-11-15 00:23:11,027 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py 2026-11-15 00:23:11,027 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py 2026-11-15 00:23:11,027 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py 2026-11-15 00:23:11,044 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-11-15 00:23:11,045 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-11-15 00:23:11,072 [ scc.git] DEBUG Calling 'git reset --hard 6a653e49e3589ccb463166506896639f6f0a5a2b' 2026-11-15 00:23:11,183 [ scc.git] DEBUG HEAD is now at 6a653e4 Fix workflow permission indentation 2026-11-15 00:23:11,585 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:23:11,586 [ scc.git] DEBUG Calling 'git merge-base 6a653e49e3589ccb463166506896639f6f0a5a2b 78e55539b68e351ed5ef202854718b49a37729a7' 2026-11-15 00:23:11,625 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..6a653e49e3589ccb463166506896639f6f0a5a2b' 2026-11-15 00:23:11,647 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate' Conflicting PR. Removed from build [OMERO-plugins-push#127](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/127/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/127/consoleText) for more details. Possible conflicts: - Upstream changes - src/omero_metadata/populate.py --conflicts 2026-11-15 00:23:11,657 [ scc.config] DEBUG Found github.token 2026-11-15 00:23:11,657 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts. 2026-11-15 00:23:11,657 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...64d33da6022f537d572d4f69a5cec86377b6e78f' 2026-11-15 00:23:11,692 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:23:11,703 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 92 (add resolve_rois to projectwrapper) 64d33da6022f537d572d4f69a5cec86377b6e78f' 2026-11-15 00:23:11,865 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-15 00:23:11,916 [ scc.git] DEBUG src/omero_metadata/populate.py | 55 +++++++++++++++++++++++++++++++++++++++++- 2026-11-15 00:23:11,917 [ scc.git] DEBUG 1 file changed, 54 insertions(+), 1 deletion(-) 2026-11-15 00:23:12,114 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:23:12,114 [ scc.git] DEBUG Calling 'git submodule update' 2026-11-15 00:23:12,219 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:23:12,219 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:23:12,231 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-15 00:23:12,326 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-11-15 00:23:12,377 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f5ce97e0690> has no local changes 2026-11-15 00:23:12,377 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-metadata Updating 3cd120c..6a653e4 Previously merged: - PR 95 sbesson 'Remove manual CHANGELOG in favor of automated GitHub releases' - PR 94 sbesson 'Cap pandas to 2.x and clean up unused dependencies' - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 92 dominikl 'add resolve_rois to projectwrapper' Conflicting PRs (not included): - PR 64 will-moore 'Support images_by_name for Screen and Plate' Generated by OMERO-plugins-push#127 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/127/)' 2026-11-15 00:23:12,486 [ scc.git] DEBUG [detached HEAD c134176] merge master -Dorg -Ssuccess-only 2026-11-15 00:23:12,488 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:23:12,488 [ scc.repo] DEBUG ## PRs found: 2026-11-15 00:23:13,018 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None 2026-11-15 00:23:13,616 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None 2026-11-15 00:23:14,251 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0?page=1 HTTP/1.1" 200 None 2026-11-15 00:23:14,740 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-15 00:23:15,212 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0?page=1 HTTP/1.1" 200 None 2026-11-15 00:23:15,685 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2 2026-11-15 00:23:15,686 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-11-15 00:23:16,231 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None 2026-11-15 00:23:16,232 [ scc.repo] DEBUG # ... Include label: dependencies 2026-11-15 00:23:16,828 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80?page=1 HTTP/1.1" 200 None 2026-11-15 00:23:17,350 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-15 00:23:17,850 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80?page=1 HTTP/1.1" 200 None 2026-11-15 00:23:18,304 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2 2026-11-15 00:23:18,304 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' 2026-11-15 00:23:18,822 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None 2026-11-15 00:23:18,822 [ scc.repo] DEBUG # ... Include label: dependencies 2026-11-15 00:23:19,468 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0?page=1 HTTP/1.1" 200 None 2026-11-15 00:23:19,948 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-15 00:23:20,482 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0?page=1 HTTP/1.1" 200 None 2026-11-15 00:23:20,935 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2 2026-11-15 00:23:20,936 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' 2026-11-15 00:23:21,434 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None 2026-11-15 00:23:21,949 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None 2026-11-15 00:23:22,431 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None 2026-11-15 00:23:22,938 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None 2026-11-15 00:23:23,444 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None 2026-11-15 00:23:23,931 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None 2026-11-15 00:23:24,426 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None 2026-11-15 00:23:24,427 [ scc.repo] DEBUG ## Branches found: 2026-11-15 00:23:24,427 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade 2026-11-15 00:23:24,428 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:23:24,428 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:23:24,445 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-11-15 00:23:24,467 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-11-15 00:23:24,467 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-11-15 00:23:24,484 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-11-15 00:23:24,528 [ scc.git] DEBUG Already up to date. 2026-11-15 00:23:24,528 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head' 2026-11-15 00:23:24,933 [ scc.git] DEBUG From https://github.com/ome/omero-parade 2026-11-15 00:23:24,933 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD 2026-11-15 00:23:24,967 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head' 2026-11-15 00:23:25,379 [ scc.git] DEBUG From https://github.com/ome/omero-parade 2026-11-15 00:23:25,379 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD 2026-11-15 00:23:25,398 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head' 2026-11-15 00:23:25,849 [ scc.git] DEBUG From https://github.com/ome/omero-parade 2026-11-15 00:23:25,850 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD 2026-11-15 00:23:25,870 [ scc.git] DEBUG ## Unique users: [] 2026-11-15 00:23:25,870 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:23:25,870 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:23:25,881 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0' 2026-11-15 00:23:25,902 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:23:25,913 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0' 2026-11-15 00:23:26,092 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-15 00:23:26,149 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++---------------------------- 2026-11-15 00:23:26,149 [ scc.git] DEBUG package.json | 2 +- 2026-11-15 00:23:26,150 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-) 2026-11-15 00:23:26,324 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:23:26,324 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80' 2026-11-15 00:23:26,349 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:23:26,361 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80' 2026-11-15 00:23:26,501 [ scc.git] DEBUG Auto-merging package-lock.json 2026-11-15 00:23:26,501 [ scc.git] DEBUG Auto-merging package.json 2026-11-15 00:23:26,551 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-15 00:23:26,605 [ scc.git] DEBUG package-lock.json | 18 ++++++++++-------- 2026-11-15 00:23:26,605 [ scc.git] DEBUG package.json | 2 +- 2026-11-15 00:23:26,605 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-) 2026-11-15 00:23:26,784 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:23:26,785 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0' 2026-11-15 00:23:26,817 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:23:26,829 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0' 2026-11-15 00:23:26,980 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-15 00:23:27,032 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-11-15 00:23:27,032 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-11-15 00:23:27,224 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:23:27,224 [ scc.git] DEBUG Calling 'git submodule update' 2026-11-15 00:23:27,332 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:23:27,332 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:23:27,343 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-15 00:23:27,441 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-11-15 00:23:27,495 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f5ce9810bd0> has no local changes 2026-11-15 00:23:27,495 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-parade Excluded PRs: - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft) - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment) - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment) - PR 39 chris-allan 'Expand all for Screens' (exclude comment) Already up to date. Merged PRs: - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Generated by OMERO-plugins-push#127 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/127/)' 2026-11-15 00:23:27,597 [ scc.git] DEBUG [detached HEAD 0443662] merge master -Dorg -Ssuccess-only 2026-11-15 00:23:27,599 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:23:27,599 [ scc.repo] DEBUG ## PRs found: 2026-11-15 00:23:27,924 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None 2026-11-15 00:23:28,436 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/16 HTTP/1.1" 200 None 2026-11-15 00:23:28,438 [ scc.repo] DEBUG # ... Include label: dependencies 2026-11-15 00:23:29,061 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e?page=1 HTTP/1.1" 200 None 2026-11-15 00:23:29,555 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-15 00:23:30,057 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e?page=1 HTTP/1.1" 200 None 2026-11-15 00:23:30,518 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/5381b9f25e1666d81d236039a1317276291e9b2e?per_page=1 HTTP/1.1" 200 2 2026-11-15 00:23:30,519 [ scc.repo] DEBUG - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-11-15 00:23:30,519 [ scc.repo] DEBUG ## Branches found: 2026-11-15 00:23:30,519 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools 2026-11-15 00:23:30,520 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:23:30,520 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:23:30,537 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-11-15 00:23:30,553 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-11-15 00:23:30,553 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-11-15 00:23:30,575 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-11-15 00:23:30,618 [ scc.git] DEBUG Already up to date. 2026-11-15 00:23:30,618 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head' 2026-11-15 00:23:31,016 [ scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools 2026-11-15 00:23:31,016 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD 2026-11-15 00:23:31,038 [ scc.git] DEBUG ## Unique users: [] 2026-11-15 00:23:31,038 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:23:31,038 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:23:31,050 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5381b9f25e1666d81d236039a1317276291e9b2e' 2026-11-15 00:23:31,069 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:23:31,085 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 5381b9f25e1666d81d236039a1317276291e9b2e' 2026-11-15 00:23:31,231 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-15 00:23:31,281 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-11-15 00:23:31,281 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-11-15 00:23:31,462 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:23:31,463 [ scc.git] DEBUG Calling 'git submodule update' 2026-11-15 00:23:31,580 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:23:31,580 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:23:31,603 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-15 00:23:31,700 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-11-15 00:23:31,741 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f5ce985fd10> has no local changes 2026-11-15 00:23:31,742 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-prometheus-tools Already up to date. Merged PRs: - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#127 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/127/)' 2026-11-15 00:23:31,886 [ scc.git] DEBUG [detached HEAD 338e269] merge master -Dorg -Ssuccess-only 2026-11-15 00:23:31,888 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:23:31,888 [ scc.repo] DEBUG ## PRs found: 2026-11-15 00:23:32,182 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None 2026-11-15 00:23:32,695 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None 2026-11-15 00:23:32,696 [ scc.repo] DEBUG ## Branches found: 2026-11-15 00:23:32,696 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois 2026-11-15 00:23:32,697 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:23:32,697 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:23:32,712 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-11-15 00:23:32,727 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-11-15 00:23:32,727 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-11-15 00:23:32,783 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-11-15 00:23:32,954 [ scc.git] DEBUG Updating bdfeb5e..fc9ff96 2026-11-15 00:23:33,295 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls/36 HTTP/1.1" 200 16718 2026-11-15 00:23:33,945 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls/35 HTTP/1.1" 200 16749 2026-11-15 00:23:33,947 [ scc.git] DEBUG ## Unique users: [] 2026-11-15 00:23:33,947 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:23:33,947 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:23:33,962 [ scc.git] DEBUG Calling 'git submodule update' 2026-11-15 00:23:34,063 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:23:34,063 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:23:34,074 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-15 00:23:34,170 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-11-15 00:23:34,220 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f5ce987a5d0> has no local changes 2026-11-15 00:23:34,220 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-rois Excluded PRs: - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) Updating bdfeb5e..fc9ff96 Previously merged: - PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml' - PR 35 will-moore 'Add roi to array functions' Generated by OMERO-plugins-push#127 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/127/)' 2026-11-15 00:23:34,334 [ scc.git] DEBUG [detached HEAD e93197d] merge master -Dorg -Ssuccess-only 2026-11-15 00:23:34,336 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:23:34,336 [ scc.repo] DEBUG ## PRs found: 2026-11-15 00:23:34,692 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None 2026-11-15 00:23:35,191 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None 2026-11-15 00:23:35,681 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None 2026-11-15 00:23:36,340 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?page=1 HTTP/1.1" 200 None 2026-11-15 00:23:37,029 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-15 00:23:37,515 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?page=1 HTTP/1.1" 200 None 2026-11-15 00:23:37,969 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2 2026-11-15 00:23:37,969 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)' 2026-11-15 00:23:37,970 [ scc.repo] DEBUG ## Branches found: 2026-11-15 00:23:37,970 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup 2026-11-15 00:23:37,970 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:23:37,970 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:23:37,987 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-11-15 00:23:38,003 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-11-15 00:23:38,003 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-11-15 00:23:38,028 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-11-15 00:23:38,207 [ scc.git] DEBUG Updating be76813..5a64360 2026-11-15 00:23:38,531 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls/24 HTTP/1.1" 200 16858 2026-11-15 00:23:39,146 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls/23 HTTP/1.1" 200 25394 2026-11-15 00:23:39,148 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head' 2026-11-15 00:23:39,778 [ scc.git] DEBUG From https://github.com/ome/omero-signup 2026-11-15 00:23:39,778 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD 2026-11-15 00:23:39,800 [ scc.git] DEBUG ## Unique users: [] 2026-11-15 00:23:39,800 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:23:39,800 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:23:39,811 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d' 2026-11-15 00:23:39,843 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:23:39,854 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d' 2026-11-15 00:23:40,139 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py 2026-11-15 00:23:40,139 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py 2026-11-15 00:23:40,139 [ scc.git] DEBUG Auto-merging omero_signup/urls.py 2026-11-15 00:23:40,139 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py 2026-11-15 00:23:40,139 [ scc.git] DEBUG Auto-merging omero_signup/views.py 2026-11-15 00:23:40,139 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py 2026-11-15 00:23:40,139 [ scc.git] DEBUG Auto-merging setup.py 2026-11-15 00:23:40,139 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py 2026-11-15 00:23:40,157 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-11-15 00:23:40,158 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-11-15 00:23:40,189 [ scc.git] DEBUG Calling 'git reset --hard 5a643604069047aa316f490d1a0b5adba78b079e' 2026-11-15 00:23:40,329 [ scc.git] DEBUG HEAD is now at 5a64360 Merge pull request #24 from pwalczysko/master 2026-11-15 00:23:40,511 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:23:40,512 [ scc.git] DEBUG Calling 'git merge-base 5a643604069047aa316f490d1a0b5adba78b079e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d' 2026-11-15 00:23:40,567 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..5a643604069047aa316f490d1a0b5adba78b079e' 2026-11-15 00:23:40,595 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)' Conflicting PR. Removed from build [OMERO-plugins-push#127](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/127/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/127/consoleText) for more details. Possible conflicts: - Upstream changes - omero_signup/signup_settings.py - setup.py - omero_signup/views.py - omero_signup/urls.py --conflicts 2026-11-15 00:23:40,606 [ scc.config] DEBUG Found github.token 2026-11-15 00:23:40,606 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts. 2026-11-15 00:23:40,606 [ scc.git] DEBUG Calling 'git submodule update' 2026-11-15 00:23:40,708 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:23:40,708 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:23:40,720 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-15 00:23:40,818 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-11-15 00:23:40,872 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f5ce97d33d0> has no local changes 2026-11-15 00:23:40,873 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-signup Updating be76813..5a64360 Previously merged: - PR 24 pwalczysko 'Upgrade framework, pip, certifi, actions, fix typo' - PR 23 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.14.3 in /.github/workflows' Conflicting PRs (not included): - PR 14 manics 'Add pre-commit (black, flake8)' Generated by OMERO-plugins-push#127 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/127/)' 2026-11-15 00:23:41,046 [ scc.git] DEBUG [detached HEAD 7b45981] merge master -Dorg -Ssuccess-only 2026-11-15 00:23:41,048 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:23:41,048 [ scc.repo] DEBUG ## PRs found: 2026-11-15 00:23:41,437 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None 2026-11-15 00:23:42,065 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None 2026-11-15 00:23:42,563 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None 2026-11-15 00:23:43,066 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74/comments HTTP/1.1" 200 None 2026-11-15 00:23:43,650 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623?page=1 HTTP/1.1" 200 None 2026-11-15 00:23:44,146 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-15 00:23:44,619 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623?page=1 HTTP/1.1" 200 None 2026-11-15 00:23:45,079 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/c18c080227e97899382d3464baa7c7885a621623?per_page=1 HTTP/1.1" 200 2 2026-11-15 00:23:45,080 [ scc.repo] DEBUG - PR 74 joshmoore 'Add 'ms' target for ./docker' 2026-11-15 00:23:45,080 [ scc.repo] DEBUG ## Branches found: 2026-11-15 00:23:45,080 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra 2026-11-15 00:23:45,081 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:23:45,081 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:23:45,101 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-11-15 00:23:45,117 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-11-15 00:23:45,117 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-11-15 00:23:45,139 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-11-15 00:23:45,271 [ scc.git] DEBUG Updating cda3ec6..c8a0015 2026-11-15 00:23:45,678 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/84 HTTP/1.1" 200 16892 2026-11-15 00:23:46,328 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/82 HTTP/1.1" 200 16663 2026-11-15 00:23:46,900 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/81 HTTP/1.1" 200 17516 2026-11-15 00:23:46,998 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head' 2026-11-15 00:23:47,468 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra 2026-11-15 00:23:47,468 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD 2026-11-15 00:23:47,488 [ scc.git] DEBUG ## Unique users: [] 2026-11-15 00:23:47,488 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:23:47,488 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:23:47,500 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c18c080227e97899382d3464baa7c7885a621623' 2026-11-15 00:23:47,523 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:23:47,535 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (Add 'ms' target for ./docker) c18c080227e97899382d3464baa7c7885a621623' 2026-11-15 00:23:47,670 [ scc.git] DEBUG Auto-merging .github/workflows/main.yml 2026-11-15 00:23:47,719 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-15 00:23:47,774 [ scc.git] DEBUG .github/workflows/main.yml | 8 ++++++++ 2026-11-15 00:23:47,775 [ scc.git] DEBUG docker | 22 ++++++++++++++++++++++ 2026-11-15 00:23:47,775 [ scc.git] DEBUG ms/compose.yml | 11 +++++++++++ 2026-11-15 00:23:47,775 [ scc.git] DEBUG ms/example/Dockerfile | 13 +++++++++++++ 2026-11-15 00:23:47,775 [ scc.git] DEBUG ms/test | 2 ++ 2026-11-15 00:23:47,775 [ scc.git] DEBUG 5 files changed, 56 insertions(+) 2026-11-15 00:23:47,775 [ scc.git] DEBUG create mode 100644 ms/compose.yml 2026-11-15 00:23:47,775 [ scc.git] DEBUG create mode 100644 ms/example/Dockerfile 2026-11-15 00:23:47,775 [ scc.git] DEBUG create mode 100755 ms/test 2026-11-15 00:23:47,982 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:23:47,983 [ scc.git] DEBUG Calling 'git submodule update' 2026-11-15 00:23:48,089 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:23:48,090 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:23:48,101 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-15 00:23:48,203 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-11-15 00:23:48,253 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f5ce8668350> has no local changes 2026-11-15 00:23:48,253 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: openmicroscopy/omero-test-infra Excluded PRs: - PR 75 marimeireles 'Microservices' (user: marimeireles) Updating cda3ec6..c8a0015 Previously merged: - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT' - PR 82 jburel 'Upgrade python' - PR 81 erickmartins 'add ulimits to omero-server container' Merged PRs: - PR 74 joshmoore 'Add 'ms' target for ./docker' Generated by OMERO-plugins-push#127 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/127/)' 2026-11-15 00:23:48,352 [ scc.git] DEBUG [detached HEAD 2ac0a87] merge master -Dorg -Ssuccess-only 2026-11-15 00:23:48,354 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:23:48,354 [ scc.repo] DEBUG ## PRs found: 2026-11-15 00:23:48,648 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 None 2026-11-15 00:23:49,378 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/issues/14 HTTP/1.1" 200 None 2026-11-15 00:23:49,379 [ scc.repo] DEBUG # ... Include label: dependencies 2026-11-15 00:23:50,001 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?page=1 HTTP/1.1" 200 None 2026-11-15 00:23:50,517 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-15 00:23:51,018 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?page=1 HTTP/1.1" 200 None 2026-11-15 00:23:51,509 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/statuses/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?per_page=1 HTTP/1.1" 200 2 2026-11-15 00:23:51,509 [ scc.repo] DEBUG - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-11-15 00:23:51,509 [ scc.repo] DEBUG ## Branches found: 2026-11-15 00:23:51,509 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload 2026-11-15 00:23:51,511 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:23:51,511 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:23:51,527 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-11-15 00:23:51,545 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-11-15 00:23:51,545 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-11-15 00:23:51,563 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-11-15 00:23:51,609 [ scc.git] DEBUG Already up to date. 2026-11-15 00:23:51,609 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head' 2026-11-15 00:23:52,036 [ scc.git] DEBUG From https://github.com/ome/omero-upload 2026-11-15 00:23:52,036 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD 2026-11-15 00:23:52,057 [ scc.git] DEBUG ## Unique users: [] 2026-11-15 00:23:52,057 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:23:52,057 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:23:52,069 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1a4dbe9a31854f4f65c509ea929debf3319ba1ea' 2026-11-15 00:23:52,088 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:23:52,099 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 1a4dbe9a31854f4f65c509ea929debf3319ba1ea' 2026-11-15 00:23:52,234 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-15 00:23:52,295 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-11-15 00:23:52,295 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-11-15 00:23:52,473 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:23:52,474 [ scc.git] DEBUG Calling 'git submodule update' 2026-11-15 00:23:52,574 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:23:52,575 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:23:52,585 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-15 00:23:52,680 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-11-15 00:23:52,723 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f5ce980c290> has no local changes 2026-11-15 00:23:52,723 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-upload Already up to date. Merged PRs: - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#127 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/127/)' 2026-11-15 00:23:52,857 [ scc.git] DEBUG [detached HEAD e0c1bb5] merge master -Dorg -Ssuccess-only 2026-11-15 00:23:52,859 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:23:52,859 [ scc.repo] DEBUG ## PRs found: 2026-11-15 00:23:53,169 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 None 2026-11-15 00:23:53,678 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/issues/22 HTTP/1.1" 200 None 2026-11-15 00:23:53,679 [ scc.repo] DEBUG # ... Include label: dependencies 2026-11-15 00:23:54,304 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902?page=1 HTTP/1.1" 200 None 2026-11-15 00:23:54,779 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-15 00:23:55,273 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902?page=1 HTTP/1.1" 200 None 2026-11-15 00:23:55,723 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/statuses/2ee819462af52bf2878fadf06d6ebdbafb8f1902?per_page=1 HTTP/1.1" 200 2 2026-11-15 00:23:55,724 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-11-15 00:23:55,724 [ scc.repo] DEBUG ## Branches found: 2026-11-15 00:23:55,724 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope 2026-11-15 00:23:55,724 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:23:55,725 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:23:55,741 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-11-15 00:23:55,757 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-11-15 00:23:55,757 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-11-15 00:23:55,811 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-11-15 00:23:55,946 [ scc.git] DEBUG Updating deab817..160d894 2026-11-15 00:23:56,282 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 17446 2026-11-15 00:23:56,284 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head' 2026-11-15 00:23:56,697 [ scc.git] DEBUG From https://github.com/ome/omero-virtual-microscope 2026-11-15 00:23:56,698 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD 2026-11-15 00:23:56,717 [ scc.git] DEBUG ## Unique users: [] 2026-11-15 00:23:56,717 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:23:56,717 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:23:56,743 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee819462af52bf2878fadf06d6ebdbafb8f1902' 2026-11-15 00:23:56,761 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:23:56,773 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 2ee819462af52bf2878fadf06d6ebdbafb8f1902' 2026-11-15 00:23:56,912 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-15 00:23:56,962 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-11-15 00:23:56,962 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-11-15 00:23:57,185 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:23:57,186 [ scc.git] DEBUG Calling 'git submodule update' 2026-11-15 00:23:57,294 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:23:57,294 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:23:57,307 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-15 00:23:57,418 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-11-15 00:23:57,464 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f5ce8673550> has no local changes 2026-11-15 00:23:57,464 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-virtual-microscope Updating deab817..160d894 Previously merged: - PR 20 jburel 'Build' Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#127 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/127/)' 2026-11-15 00:23:57,580 [ scc.git] DEBUG [detached HEAD bb6ad08] merge master -Dorg -Ssuccess-only 2026-11-15 00:23:57,582 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:23:57,582 [ scc.git] INFO Overriding base-branch from master to main 2026-11-15 00:23:57,582 [ scc.repo] DEBUG ## PRs found: 2026-11-15 00:23:57,903 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None 2026-11-15 00:23:58,605 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None 2026-11-15 00:23:59,090 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21/comments HTTP/1.1" 200 None 2026-11-15 00:23:59,725 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc?page=1 HTTP/1.1" 200 None 2026-11-15 00:24:00,211 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-15 00:24:00,705 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc?page=1 HTTP/1.1" 200 None 2026-11-15 00:24:01,166 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/d07067753650282c9e8cdbbeae37897b7ed0d4cc?per_page=1 HTTP/1.1" 200 2 2026-11-15 00:24:01,166 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import' 2026-11-15 00:24:01,678 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None 2026-11-15 00:24:02,182 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None 2026-11-15 00:24:02,677 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None 2026-11-15 00:24:03,299 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8?page=1 HTTP/1.1" 200 None 2026-11-15 00:24:03,777 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-15 00:24:04,267 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8?page=1 HTTP/1.1" 200 None 2026-11-15 00:24:04,731 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2 2026-11-15 00:24:04,731 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' 2026-11-15 00:24:04,732 [ scc.repo] DEBUG ## Branches found: 2026-11-15 00:24:04,732 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr 2026-11-15 00:24:04,732 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:24:04,732 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:24:04,749 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main' 2026-11-15 00:24:04,766 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-11-15 00:24:04,766 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main' 2026-11-15 00:24:04,788 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main' 2026-11-15 00:24:04,917 [ scc.git] DEBUG Updating 8f3c313..4e1e685 2026-11-15 00:24:05,337 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/23 HTTP/1.1" 200 16957 2026-11-15 00:24:05,890 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/20 HTTP/1.1" 200 17011 2026-11-15 00:24:05,891 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head' 2026-11-15 00:24:06,427 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr 2026-11-15 00:24:06,427 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD 2026-11-15 00:24:06,447 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head' 2026-11-15 00:24:07,044 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr 2026-11-15 00:24:07,044 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD 2026-11-15 00:24:07,064 [ scc.git] DEBUG ## Unique users: [] 2026-11-15 00:24:07,064 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:24:07,064 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:24:07,076 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8' 2026-11-15 00:24:07,101 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:24:07,112 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8' 2026-11-15 00:24:07,317 [ scc.git] DEBUG Auto-merging README.rst 2026-11-15 00:24:07,317 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py 2026-11-15 00:24:07,317 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py 2026-11-15 00:24:07,317 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py 2026-11-15 00:24:07,340 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-11-15 00:24:07,341 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-11-15 00:24:07,374 [ scc.git] DEBUG Calling 'git reset --hard 4e1e685dff22136abfd2626f6fd6eaf985aba368' 2026-11-15 00:24:07,498 [ scc.git] DEBUG HEAD is now at 4e1e685 Merge pull request #23 from lubianat/patch-1 2026-11-15 00:24:07,685 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:24:07,686 [ scc.git] DEBUG Calling 'git merge-base 4e1e685dff22136abfd2626f6fd6eaf985aba368 85cf4c893f393da6763bf4cee2a308832a41a9e8' 2026-11-15 00:24:07,709 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..4e1e685dff22136abfd2626f6fd6eaf985aba368' 2026-11-15 00:24:07,727 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' Conflicting PR. Removed from build [OMERO-plugins-push#127](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/127/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/127/consoleText) for more details. Possible conflicts: - Upstream changes - omero_web_zarr/urls.py --conflicts 2026-11-15 00:24:07,737 [ scc.config] DEBUG Found github.token 2026-11-15 00:24:07,737 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts. 2026-11-15 00:24:07,737 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d07067753650282c9e8cdbbeae37897b7ed0d4cc' 2026-11-15 00:24:07,772 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:24:07,783 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) d07067753650282c9e8cdbbeae37897b7ed0d4cc' 2026-11-15 00:24:07,950 [ scc.git] DEBUG Auto-merging README.rst 2026-11-15 00:24:07,950 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py 2026-11-15 00:24:08,005 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-15 00:24:08,071 [ scc.git] DEBUG README.rst | 3 + 2026-11-15 00:24:08,071 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++ 2026-11-15 00:24:08,071 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 + 2026-11-15 00:24:08,071 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++- 2026-11-15 00:24:08,071 [ scc.git] DEBUG setup.py | 5 +- 2026-11-15 00:24:08,071 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-) 2026-11-15 00:24:08,071 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html 2026-11-15 00:24:08,272 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:24:08,273 [ scc.git] DEBUG Calling 'git submodule update' 2026-11-15 00:24:08,383 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:24:08,383 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:24:08,395 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-15 00:24:08,495 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-11-15 00:24:08,548 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f5ce97d3c90> has no local changes 2026-11-15 00:24:08,548 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-web-zarr Excluded PRs: - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft) Updating 8f3c313..4e1e685 Previously merged: - PR 23 lubianat 'Fix mix of .rst and .md on README' - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints' Merged PRs: - PR 21 will-moore 'Web zarr import' Conflicting PRs (not included): - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' Generated by OMERO-plugins-push#127 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/127/)' 2026-11-15 00:24:08,653 [ scc.git] DEBUG [detached HEAD 070a4ad] merge master -Dorg -Ssuccess-only 2026-11-15 00:24:08,654 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:24:08,654 [ scc.repo] DEBUG ## PRs found: 2026-11-15 00:24:09,019 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 None 2026-11-15 00:24:09,578 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/issues/25 HTTP/1.1" 200 None 2026-11-15 00:24:09,579 [ scc.repo] DEBUG # ... Include label: dependencies 2026-11-15 00:24:10,212 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9?page=1 HTTP/1.1" 200 None 2026-11-15 00:24:10,689 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-15 00:24:11,187 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9?page=1 HTTP/1.1" 200 None 2026-11-15 00:24:11,633 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/statuses/c73bedb717b9ecce0af666245d3486aa5a2dafe9?per_page=1 HTTP/1.1" 200 2 2026-11-15 00:24:11,633 [ scc.repo] DEBUG - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-11-15 00:24:11,633 [ scc.repo] DEBUG ## Branches found: 2026-11-15 00:24:11,633 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror 2026-11-15 00:24:11,634 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:24:11,634 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:24:11,650 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-11-15 00:24:11,667 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-11-15 00:24:11,667 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-11-15 00:24:11,686 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-11-15 00:24:11,737 [ scc.git] DEBUG Already up to date. 2026-11-15 00:24:11,738 [ scc.git] DEBUG Calling 'git fetch origin pull/25/head' 2026-11-15 00:24:12,170 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-weberror 2026-11-15 00:24:12,171 [ scc.git] DEBUG * branch refs/pull/25/head -> FETCH_HEAD 2026-11-15 00:24:12,193 [ scc.git] DEBUG ## Unique users: [] 2026-11-15 00:24:12,193 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:24:12,193 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:24:12,206 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c73bedb717b9ecce0af666245d3486aa5a2dafe9' 2026-11-15 00:24:12,226 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:24:12,238 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) c73bedb717b9ecce0af666245d3486aa5a2dafe9' 2026-11-15 00:24:12,390 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-15 00:24:12,444 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-11-15 00:24:12,444 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-11-15 00:24:12,638 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:24:12,639 [ scc.git] DEBUG Calling 'git submodule update' 2026-11-15 00:24:12,754 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:24:12,754 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:24:12,766 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-15 00:24:12,872 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-11-15 00:24:12,916 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f5ce86b7e10> has no local changes 2026-11-15 00:24:12,916 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: openmicroscopy/omero-weberror Already up to date. Merged PRs: - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#127 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/127/)' 2026-11-15 00:24:13,037 [ scc.git] DEBUG [detached HEAD 339094a] merge master -Dorg -Ssuccess-only 2026-11-15 00:24:13,039 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:24:13,039 [ scc.repo] DEBUG ## PRs found: 2026-11-15 00:24:13,337 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 None 2026-11-15 00:24:13,848 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/issues/37 HTTP/1.1" 200 None 2026-11-15 00:24:13,849 [ scc.repo] DEBUG # ... Include label: dependencies 2026-11-15 00:24:14,710 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478?page=1 HTTP/1.1" 200 None 2026-11-15 00:24:15,221 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-15 00:24:15,724 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478?page=1 HTTP/1.1" 200 None 2026-11-15 00:24:16,189 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/statuses/8cf5f7e65ae8e945b134e41e77bc13a785aff478?per_page=1 HTTP/1.1" 200 2 2026-11-15 00:24:16,189 [ scc.repo] DEBUG - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-11-15 00:24:16,189 [ scc.repo] DEBUG ## Branches found: 2026-11-15 00:24:16,190 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest 2026-11-15 00:24:16,191 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:24:16,191 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:24:16,209 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-11-15 00:24:16,225 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-11-15 00:24:16,225 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-11-15 00:24:16,247 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-11-15 00:24:16,316 [ scc.git] DEBUG Already up to date. 2026-11-15 00:24:16,316 [ scc.git] DEBUG Calling 'git fetch origin pull/37/head' 2026-11-15 00:24:16,734 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-webtest 2026-11-15 00:24:16,735 [ scc.git] DEBUG * branch refs/pull/37/head -> FETCH_HEAD 2026-11-15 00:24:16,754 [ scc.git] DEBUG ## Unique users: [] 2026-11-15 00:24:16,754 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:24:16,754 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:24:16,768 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8cf5f7e65ae8e945b134e41e77bc13a785aff478' 2026-11-15 00:24:16,787 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:24:16,801 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 37 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8cf5f7e65ae8e945b134e41e77bc13a785aff478' 2026-11-15 00:24:17,033 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-15 00:24:17,105 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-11-15 00:24:17,105 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-11-15 00:24:17,305 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:24:17,306 [ scc.git] DEBUG Calling 'git submodule update' 2026-11-15 00:24:17,433 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:24:17,433 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:24:17,445 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-15 00:24:17,549 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-11-15 00:24:17,595 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f5ce9804450> has no local changes 2026-11-15 00:24:17,595 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: openmicroscopy/omero-webtest Already up to date. Merged PRs: - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#127 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/127/)' 2026-11-15 00:24:17,716 [ scc.git] DEBUG [detached HEAD 2c71691] merge master -Dorg -Ssuccess-only 2026-11-15 00:24:17,717 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:24:17,717 [ scc.repo] DEBUG ## PRs found: 2026-11-15 00:24:17,954 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 2 2026-11-15 00:24:17,955 [ scc.repo] DEBUG ## Branches found: 2026-11-15 00:24:17,955 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway 2026-11-15 00:24:17,955 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:24:17,955 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:24:17,971 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-11-15 00:24:17,987 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-11-15 00:24:17,987 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-11-15 00:24:18,006 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-11-15 00:24:18,050 [ scc.git] DEBUG Already up to date. 2026-11-15 00:24:18,050 [ scc.git] DEBUG ## Unique users: [] 2026-11-15 00:24:18,050 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:24:18,050 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:24:18,064 [ scc.git] DEBUG Calling 'git submodule update' 2026-11-15 00:24:18,169 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:24:18,170 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:24:18,183 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-15 00:24:18,286 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-11-15 00:24:18,381 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f5cea8e7c90> has no local changes 2026-11-15 00:24:18,381 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/rOMERO-gateway Already up to date. Generated by OMERO-plugins-push#127 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/127/)' 2026-11-15 00:24:18,520 [ scc.git] DEBUG [detached HEAD 2946c75] merge master -Dorg -Ssuccess-only 2026-11-15 00:24:18,522 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:24:18,522 [ scc.git] INFO Overriding base-branch from master to develop 2026-11-15 00:24:18,522 [ scc.repo] DEBUG ## PRs found: 2026-11-15 00:24:18,840 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None 2026-11-15 00:24:19,335 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/236 HTTP/1.1" 200 None 2026-11-15 00:24:19,830 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/36fd91e019a51df089516f63208bb80f12f39179?page=1 HTTP/1.1" 200 None 2026-11-15 00:24:20,344 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/36fd91e019a51df089516f63208bb80f12f39179/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-15 00:24:20,909 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/36fd91e019a51df089516f63208bb80f12f39179/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-11-15 00:24:21,402 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/36fd91e019a51df089516f63208bb80f12f39179?page=1 HTTP/1.1" 200 None 2026-11-15 00:24:21,855 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/36fd91e019a51df089516f63208bb80f12f39179?per_page=1 HTTP/1.1" 200 2 2026-11-15 00:24:21,855 [ scc.repo] DEBUG - PR 236 will-moore 'Rename text column to shape_text to be more explicit' 2026-11-15 00:24:22,381 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/232 HTTP/1.1" 200 None 2026-11-15 00:24:22,888 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f?page=1 HTTP/1.1" 200 None 2026-11-15 00:24:23,401 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-15 00:24:23,890 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-11-15 00:24:24,373 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f?page=1 HTTP/1.1" 200 None 2026-11-15 00:24:24,834 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/e190baa635f40826befc84321719243092ee849f?per_page=1 HTTP/1.1" 200 2 2026-11-15 00:24:24,834 [ scc.repo] DEBUG - PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`' 2026-11-15 00:24:24,834 [ scc.repo] DEBUG ## Branches found: 2026-11-15 00:24:24,834 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts 2026-11-15 00:24:24,835 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:24:24,835 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:24:24,853 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop' 2026-11-15 00:24:24,873 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-11-15 00:24:24,874 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop' 2026-11-15 00:24:25,039 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop' 2026-11-15 00:24:25,465 [ scc.git] DEBUG Updating 4b4c755..636540e 2026-11-15 00:24:25,739 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/235 HTTP/1.1" 200 16917 2026-11-15 00:24:26,384 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/231 HTTP/1.1" 200 15981 2026-11-15 00:24:26,929 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/229 HTTP/1.1" 200 16955 2026-11-15 00:24:27,466 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/223 HTTP/1.1" 200 16867 2026-11-15 00:24:27,987 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/230 HTTP/1.1" 200 16558 2026-11-15 00:24:28,555 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/228 HTTP/1.1" 200 27438 2026-11-15 00:24:29,080 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 15967 2026-11-15 00:24:29,640 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 16464 2026-11-15 00:24:29,742 [ scc.git] DEBUG Calling 'git fetch origin pull/232/head' 2026-11-15 00:24:30,313 [ scc.git] DEBUG From https://github.com/ome/scripts 2026-11-15 00:24:30,314 [ scc.git] DEBUG * branch refs/pull/232/head -> FETCH_HEAD 2026-11-15 00:24:30,337 [ scc.git] DEBUG Calling 'git fetch origin pull/236/head' 2026-11-15 00:24:30,854 [ scc.git] DEBUG From https://github.com/ome/scripts 2026-11-15 00:24:30,854 [ scc.git] DEBUG * branch refs/pull/236/head -> FETCH_HEAD 2026-11-15 00:24:30,881 [ scc.git] DEBUG ## Unique users: [] 2026-11-15 00:24:30,881 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:24:30,881 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:24:30,895 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...e190baa635f40826befc84321719243092ee849f' 2026-11-15 00:24:30,949 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:24:30,963 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 232 (Add Auto header detection to `Populate_Metadata.py`) e190baa635f40826befc84321719243092ee849f' 2026-11-15 00:24:31,231 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-15 00:24:31,309 [ scc.git] DEBUG omero/import_scripts/Populate_Metadata.py | 26 ++++++++++++++++++++++++-- 2026-11-15 00:24:31,309 [ scc.git] DEBUG 1 file changed, 24 insertions(+), 2 deletions(-) 2026-11-15 00:24:31,554 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:24:31,554 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...36fd91e019a51df089516f63208bb80f12f39179' 2026-11-15 00:24:31,623 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:24:31,637 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 236 (Rename text column to shape_text to be more explicit) 36fd91e019a51df089516f63208bb80f12f39179' 2026-11-15 00:24:31,854 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-15 00:24:31,927 [ scc.git] DEBUG omero/export_scripts/Batch_ROI_Export.py | 6 ++---- 2026-11-15 00:24:31,928 [ scc.git] DEBUG test/integration/test_export_scripts.py | 2 +- 2026-11-15 00:24:31,928 [ scc.git] DEBUG 2 files changed, 3 insertions(+), 5 deletions(-) 2026-11-15 00:24:32,126 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:24:32,127 [ scc.git] DEBUG Calling 'git submodule update' 2026-11-15 00:24:32,251 [ scc.git] DEBUG Get sha1 of %s 2026-11-15 00:24:32,251 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-15 00:24:32,273 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-15 00:24:32,382 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-11-15 00:24:32,446 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f5ce86aca50> has no local changes 2026-11-15 00:24:32,446 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/scripts Updating 4b4c755..636540e Previously merged: - PR 235 will-moore 'Batch roi export tags' - PR 231 jburel 'Create Release ' - PR 229 Rdornier 'Adding support for custom user label' - PR 223 will-moore 'don't attempt ROI stats on big images' - PR 230 Rdornier 'Import from csv fix' - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows' - PR 227 jburel 'Replace tostring by tobytes' - PR 225 will-moore 'Fix param names and assertion texts in tests' Merged PRs: - PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`' - PR 236 will-moore 'Rename text column to shape_text to be more explicit' Generated by OMERO-plugins-push#127 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/127/)' 2026-11-15 00:24:32,577 [ scc.git] DEBUG [detached HEAD faa9e13] merge master -Dorg -Ssuccess-only 2026-11-15 00:24:32,578 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:24:32,578 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-15 00:24:32,811 [ scc.config] DEBUG Found submodule.figure.url 2026-11-15 00:24:32,999 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:24:33,032 [ scc.config] DEBUG Found submodule.minimal-omero-client.url 2026-11-15 00:24:33,427 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:24:33,453 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch 2026-11-15 00:24:33,461 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url 2026-11-15 00:24:33,852 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:24:33,881 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch 2026-11-15 00:24:33,888 [ scc.config] DEBUG Found submodule.omero-cli-render.url 2026-11-15 00:24:34,280 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:24:34,309 [ scc.config] DEBUG Found submodule.omero-cli-render.branch 2026-11-15 00:24:34,316 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url 2026-11-15 00:24:34,709 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:24:34,744 [ scc.config] DEBUG Found submodule.omero-figure.url 2026-11-15 00:24:35,140 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:24:35,172 [ scc.config] DEBUG Found submodule.omero-figure.branch 2026-11-15 00:24:35,181 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url 2026-11-15 00:24:35,570 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:24:35,597 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch 2026-11-15 00:24:35,606 [ scc.config] DEBUG Found submodule.omero-gallery.url 2026-11-15 00:24:36,024 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:24:36,053 [ scc.config] DEBUG Found submodule.omero-gallery.branch 2026-11-15 00:24:36,060 [ scc.config] DEBUG Found submodule.omero-iviewer.url 2026-11-15 00:24:36,458 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:24:36,488 [ scc.config] DEBUG Found submodule.omero-iviewer.branch 2026-11-15 00:24:36,496 [ scc.config] DEBUG Found submodule.omero-mapr.url 2026-11-15 00:24:36,894 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:24:36,921 [ scc.config] DEBUG Found submodule.omero-mapr.branch 2026-11-15 00:24:36,929 [ scc.config] DEBUG Found submodule.omero-metadata.url 2026-11-15 00:24:37,320 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:24:37,347 [ scc.config] DEBUG Found submodule.omero-metadata.branch 2026-11-15 00:24:37,356 [ scc.config] DEBUG Found submodule.omero-parade.url 2026-11-15 00:24:37,753 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:24:37,780 [ scc.config] DEBUG Found submodule.omero-parade.branch 2026-11-15 00:24:37,787 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url 2026-11-15 00:24:38,186 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:24:38,217 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch 2026-11-15 00:24:38,225 [ scc.config] DEBUG Found submodule.omero-rois.url 2026-11-15 00:24:38,626 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:24:38,661 [ scc.config] DEBUG Found submodule.omero-signup.url 2026-11-15 00:24:39,058 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:24:39,093 [ scc.config] DEBUG Found submodule.omero-test-infra.url 2026-11-15 00:24:39,487 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:24:39,519 [ scc.config] DEBUG Found submodule.omero-test-infra.branch 2026-11-15 00:24:39,528 [ scc.config] DEBUG Found submodule.omero-upload.url 2026-11-15 00:24:39,934 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:24:39,969 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url 2026-11-15 00:24:40,375 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:24:40,407 [ scc.config] DEBUG Found submodule.omero-web-zarr.url 2026-11-15 00:24:40,821 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:24:40,853 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch 2026-11-15 00:24:40,860 [ scc.config] DEBUG Found submodule.omero-weberror.url 2026-11-15 00:24:41,249 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:24:41,276 [ scc.config] DEBUG Found submodule.omero-weberror.branch 2026-11-15 00:24:41,284 [ scc.config] DEBUG Found submodule.omero-webtest.url 2026-11-15 00:24:41,682 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:24:41,711 [ scc.config] DEBUG Found submodule.omero-webtest.branch 2026-11-15 00:24:41,718 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url 2026-11-15 00:24:42,116 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:24:42,145 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch 2026-11-15 00:24:42,155 [ scc.config] DEBUG Found submodule.scripts.url 2026-11-15 00:24:42,546 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-15 00:24:42,574 [ scc.config] DEBUG Found submodule.scripts.branch 2026-11-15 00:24:42,574 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-11-15 00:24:44,393 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f5ceab697d0> has local changes 2026-11-15 00:24:44,393 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-plugins Already up to date. Merged PRs: - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' - PR 435 will-moore 'Add omero-biofilefinder as a submodule' Repository: ome/figure Excluded PRs: - PR 12 will-moore 'Browser based export' (exclude comment) - PR 9 will-moore 'Save omezarr collection' (stage: draft) Updating 3935875..41fd98f Previously merged: - PR 26 will-moore 'Remove python script' - PR 5 will-moore 'Add sample_figures/ngff_images_figure.json' - PR 24 Tom-TBT 'Label selection timeout & blur fix' - PR 20 will-moore 'Hide export dropdown unless omero' - PR 19 Rdornier 'Fix rectangle crop' - PR 14 will-moore 'App served by omero env' - PR 17 Rdornier 'Do not crop rotated panel at export' - PR 15 will-moore 'Replace navbar 'OMERO' with 'figure' and OME logo' Merged PRs: - PR 21 tcompa 'Avoid request to `WEBGATEWAYINDEX + "open_with/` if `APP_SERVED_BY_OMERO = false`' - PR 30 will-moore 'License to BSD' Repository: ome/minimal-omero-client Already up to date. Repository: ome/omero-cli-duplicate Excluded PRs: - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment) Already up to date. Merged PRs: - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-cli-render Excluded PRs: - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft) Updating ce6e13c..68b7303 Previously merged: - PR 74 jburel 'Replace manual changelog by automated GH release step' - PR 75 jburel 'Sort the new channels to ensure settings are set' - PR 71 dominikl 'Escape slash character in image names' - PR 69 dominikl 'Fix help text for impo/export commands' Merged PRs: - PR 59 will-moore 'Apply settings to Plate' Repository: ome/omero-cli-zarr Excluded PRs: - PR 166 will-moore 'Downsample scale option' (stage: draft) - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment) Updating 11d3587..d5f88d8 Previously merged: - PR 193 dominikl 'Only parse import uris if stated' - PR 182 will-moore 'Revert "Remove support for Plate import"' - PR 194 will-moore 'Update uk1s3.embassy links to livingobjects' - PR 197 pwalczysko 'Fix pragma' - PR 196 will-moore 'Storage options only if needed' - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' - PR 192 jburel 'Set Omero pixel size' - PR 186 jburel 'Create release from tag' - PR 187 dominikl 'Fix target-by-name option' - PR 180 will-moore 'Import command' - PR 179 will-moore 'Changelog 0.6.0' - PR 177 jburel 'Replace fromstring by frombuffer' - PR 175 will-moore 'Pin ome-zarr-py <0.12.0' - PR 147 will-moore 'Name option' - PR 173 will-moore 'Add test_export_plate_polygons()' - PR 171 will-moore 'Initial addition of integration tests' - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Conflicting PRs (not included): - PR 174 will-moore 'Skip wells' - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' Repository: ome/omero-figure Excluded PRs: - PR 715 Rdornier 'Fix VSI pyramids rendering' (user: Rdornier) - PR 712 dependabot[bot] 'Bump vite from 8.0.16 to 8.1.6' (status: failure) Updating 9cc36cde..3195c3df Previously merged: - PR 704 jburel 'Revert commit 49ae9c9' - PR 703 will-moore 'Readme remove rc' - PR 700 will-moore 'Fix parentheses in zoom level for loop for export script' - PR 692 will-moore 'colorbar lut background fix' - PR 701 will-moore 'bump nanoid to 3.3.18 with 'npm audit fix'' - PR 698 dependabot[bot] 'Bump dompurify from 3.4.9 to 3.4.13' - PR 697 dependabot[bot] 'Bump postcss from 8.5.15 to 8.5.25' - PR 695 dependabot[bot] 'Bump immutable from 5.1.6 to 5.1.9' - PR 693 dependabot[bot] 'Bump dompurify from 3.4.0 to 3.4.9' - PR 691 dependabot[bot] 'Bump esbuild and vite' - PR 686 will-moore 'Add note about zarr etc requirement for export script with zarr images' - PR 690 dependabot[bot] 'Bump postcss from 8.5.3 to 8.5.15' - PR 681 dependabot[bot] 'Bump dompurify from 3.3.2 to 3.4.0' - PR 688 will-moore 'app handles ?image=1 without needing /new?image=1' - PR 685 will-moore 'Fix static files links for release build' - PR 683 will-moore 'Add touch support for clicking on single panel' - PR 680 will-moore 'Use --pre install for export script in README' - PR 684 will-moore 'Fix PKG_VERSION fix in publish_pypi.yml' - PR 682 will-moore 'Enable pre-release rc workflow with bumpversion and publish to pypi' - PR 679 will-moore 'Remove commit from gist demoUrl to load latest, with livingobjects URLs' - PR 677 dependabot[bot] 'Bump vite from 6.4.1 to 6.4.2' - PR 666 will-moore 'Standalone app' - PR 676 dependabot[bot] 'Bump picomatch' - PR 669 will-moore 'Standalone python script' - PR 662 will-moore 'Export script handles OME-zarr images' - PR 663 will-moore 'Zarr' - PR 674 dependabot[bot] 'Bump immutable from 4.1.0 to 4.3.8' - PR 675 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.2' - PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8' - PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues' - PR 667 Tom-TBT 'Label suggestion interface' - PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID' - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO' - PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0' - PR 664 Nirkan 'Handle many channels ' - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes' - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540' - PR 661 Rdornier 'Align to grid - check if panels are already in the grid' - PR 649 jburel 'Replace manual changelog by automated GH release step' - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout' - PR 637 Rdornier 'Fix scalebar position' - PR 600 Rdornier 'Label on rois' - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles' - PR 651 Rdornier 'More compliant align to grid' - PR 650 jburel 'Bump Python version' - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…' - PR 610 will-moore 'Add docs/contributing.rst' - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1' - PR 646 JensWendt 'fix word wrap of image names' - PR 612 will-moore 'Script version' - PR 630 will-moore 'Fix color and position for ALL new panel insets' - PR 616 Rdornier 'Fix labels around border' - PR 605 Tom-TBT 'Colorbar feature' - PR 638 Rdornier 'Fix arrow opacity' - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4' - PR 635 dependabot[bot] 'Bump esbuild and vite' - PR 623 will-moore 'Fix wrapping of label X button. see issues/622' - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 706 will-moore 'Figure repo migration' - PR 714 Rdornier 'Fix scalebar label' Conflicting PRs (not included): - PR 711 dependabot[bot] 'Bump source-map-js from 1.2.1 to 1.2.2' - PR 713 dependabot[bot] 'Bump dompurify from 3.4.13 to 3.4.17' Repository: ome/omero-fpbioimage Already up to date. Merged PRs: - PR 18 jburel 'default size z value' - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-gallery Already up to date. Merged PRs: - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - PR 114 dependabot[bot] 'Bump tar and fsevents' - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' Conflicting PRs (not included): - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' Repository: ome/omero-iviewer Excluded PRs: - PR 420 will-moore 'Add release process to README' (exclude comment) - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment) Updating 7a798cee..106ca787 Previously merged: - PR 586 dependabot[bot] 'Bump serialize-javascript from 7.1.2 to 7.1.4' - PR 585 dependabot[bot] 'Bump body-parser' - PR 584 dependabot[bot] 'Bump qs from 6.16.0 to 6.16.2' - PR 583 dependabot[bot] 'Bump follow-redirects from 1.16.0 to 1.16.3' - PR 582 dependabot[bot] 'Bump postcss-selector-parser from 6.0.13 to 6.1.5' - PR 581 dependabot[bot] 'Bump fast-uri from 3.1.8 to 3.1.9' - PR 580 dependabot[bot] 'Bump launch-editor from 2.14.1 to 2.14.2' - PR 578 dependabot[bot] 'Bump compression from 1.8.1 to 1.8.2' - PR 577 dependabot[bot] 'Bump source-map-js from 1.2.1 to 1.2.2' - PR 576 dependabot[bot] 'Bump shell-quote from 1.10.0 to 1.12.0' - PR 575 dependabot[bot] 'Bump proxy-addr from 2.0.7 to 2.0.8' - PR 497 will-moore 'ROI Tags' - PR 574 dependabot[bot] 'Bump minimatch from 3.1.2 to 3.1.5' - PR 573 dependabot[bot] 'Bump serialize-javascript and mocha' - PR 572 dependabot[bot] 'Bump brace-expansion from 1.1.13 to 1.1.21' - PR 571 dependabot[bot] 'Bump fast-uri from 3.1.7 to 3.1.8' - PR 570 dependabot[bot] 'Bump engine.io from 6.6.9 to 6.6.11' - PR 568 dependabot[bot] 'Bump webpack-dev-middleware from 8.1.0 to 8.3.0' - PR 566 dependabot[bot] 'Bump js-yaml from 4.1.0 to 4.3.2' - PR 565 dependabot[bot] 'Bump qs and body-parser' - PR 564 dependabot[bot] 'Bump fast-uri from 3.1.5 to 3.1.7' - PR 567 will-moore 'Basic fix of prev/next shapes when shapes sorted' - PR 562 will-moore 'Keyboard select roi' - PR 563 will-moore 'Use POST data for imgRdef save' - PR 559 dependabot[bot] 'Bump js-yaml and mocha' - PR 558 dependabot[bot] 'Bump fast-uri from 3.1.4 to 3.1.5' - PR 557 dependabot[bot] 'Bump socket.io-parser from 4.2.6 to 4.2.7' - PR 541 will-moore 'Only add channel to tile request string if active' - PR 556 dependabot[bot] 'Bump webpack-dev-server from 5.2.6 to 6.0.0' - PR 554 dependabot[bot] 'Bump http-proxy-middleware from 2.0.9 to 2.0.10' - PR 553 dependabot[bot] 'Bump postcss from 8.5.10 to 8.5.25' - PR 552 dependabot[bot] 'Bump tmp from 0.2.6 to 0.2.7' - PR 551 dependabot[bot] 'Bump body-parser from 1.20.5 to 1.20.6' - PR 550 dependabot[bot] 'Bump webpack-dev-server from 5.2.4 to 5.2.6' - PR 549 dependabot[bot] 'Bump shell-quote from 1.8.4 to 1.10.0' - PR 548 dependabot[bot] 'Bump fast-uri from 3.1.2 to 3.1.4' - PR 547 dependabot[bot] 'Bump websocket-driver from 0.7.4 to 0.7.5' - PR 540 dependabot[bot] 'Bump @babel/core from 7.5.4 to 7.29.6' - PR 539 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter' - PR 537 dependabot[bot] 'Bump launch-editor from 2.13.2 to 2.14.1' - PR 535 dependabot[bot] 'Bump tmp and eslint' - PR 527 PollenGeo 'Add grid overlay feature with configurable cell size and labels' - PR 534 will-moore 'Fix settings.md link to master branch. Move iviewer redirect settings' - PR 533 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter' - PR 530 dependabot[bot] 'Bump webpack-dev-server from 4.13.2 to 5.2.4' - PR 528 dependabot[bot] 'Bump fast-uri from 3.1.0 to 3.1.2' - PR 529 will-moore 'Image id and roi id initial params' - PR 526 will-moore 'Add keyboard handling for Left, Right, Up, Down Arrows to pan' - PR 525 dependabot[bot] 'Bump postcss from 8.4.31 to 8.5.10' - PR 524 dependabot[bot] 'Bump protocol-buffers-schema from 3.3.2 to 3.6.1' - PR 523 dependabot[bot] 'Bump follow-redirects from 1.15.6 to 1.16.0' - PR 522 dependabot[bot] 'Bump lodash from 4.17.21 to 4.18.1' - PR 521 dependabot[bot] 'Bump brace-expansion from 1.1.11 to 1.1.13' - PR 520 dependabot[bot] 'Bump node-forge from 1.3.1 to 1.4.0' - PR 519 dependabot[bot] 'Bump picomatch from 2.3.1 to 2.3.2' - PR 518 dependabot[bot] 'Bump ajv from 6.12.6 to 6.14.0' - PR 514 Tom-TBT 'Fix where interpolate_pixels server config is read from' - PR 513 jburel 'Bump Python version' - PR 512 jburel 'Replace manual changelog by automated GH release step' - PR 465 will-moore 'Save as Figure' - PR 517 will-moore 'Fix roi link permissions' - PR 516 dependabot[bot] 'Bump socket.io-parser from 4.2.4 to 4.2.6' - PR 510 joshmoore 'Re-enable omero-test-infra' - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 471 will-moore 'Z projection disabled tooltip' - PR 587 will-moore 'Roi columns add remove' - PR 588 will-moore 'Only show Tag link button if not a Tagset' Conflicting PRs (not included): - PR 532 will-moore 'Zarr layers' Repository: ome/omero-mapr Excluded PRs: - PR 79 will-moore 'Right panel title' (exclude comment) - PR 74 will-moore 'mapr extension of webclient' (exclude comment) Already up to date. Merged PRs: - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' - PR 97 JoshuaFortriede 'BUG Fix: use HTML value to replace HTML' - PR 98 JoshuaFortriede 'use namespace with keys' Conflicting PRs (not included): - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-metadata Updating 3cd120c..6a653e4 Previously merged: - PR 95 sbesson 'Remove manual CHANGELOG in favor of automated GitHub releases' - PR 94 sbesson 'Cap pandas to 2.x and clean up unused dependencies' - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 92 dominikl 'add resolve_rois to projectwrapper' Conflicting PRs (not included): - PR 64 will-moore 'Support images_by_name for Screen and Plate' Repository: ome/omero-parade Excluded PRs: - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft) - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment) - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment) - PR 39 chris-allan 'Expand all for Screens' (exclude comment) Already up to date. Merged PRs: - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Repository: ome/omero-prometheus-tools Already up to date. Merged PRs: - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-rois Excluded PRs: - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) Updating bdfeb5e..fc9ff96 Previously merged: - PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml' - PR 35 will-moore 'Add roi to array functions' Repository: ome/omero-signup Updating be76813..5a64360 Previously merged: - PR 24 pwalczysko 'Upgrade framework, pip, certifi, actions, fix typo' - PR 23 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.14.3 in /.github/workflows' Conflicting PRs (not included): - PR 14 manics 'Add pre-commit (black, flake8)' Repository: openmicroscopy/omero-test-infra Excluded PRs: - PR 75 marimeireles 'Microservices' (user: marimeireles) Updating cda3ec6..c8a0015 Previously merged: - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT' - PR 82 jburel 'Upgrade python' - PR 81 erickmartins 'add ulimits to omero-server container' Merged PRs: - PR 74 joshmoore 'Add 'ms' target for ./docker' Repository: ome/omero-upload Already up to date. Merged PRs: - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-virtual-microscope Updating deab817..160d894 Previously merged: - PR 20 jburel 'Build' Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-web-zarr Excluded PRs: - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft) Updating 8f3c313..4e1e685 Previously merged: - PR 23 lubianat 'Fix mix of .rst and .md on README' - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints' Merged PRs: - PR 21 will-moore 'Web zarr import' Conflicting PRs (not included): - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' Repository: openmicroscopy/omero-weberror Already up to date. Merged PRs: - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: openmicroscopy/omero-webtest Already up to date. Merged PRs: - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/rOMERO-gateway Already up to date. Repository: ome/scripts Updating 4b4c755..636540e Previously merged: - PR 235 will-moore 'Batch roi export tags' - PR 231 jburel 'Create Release ' - PR 229 Rdornier 'Adding support for custom user label' - PR 223 will-moore 'don't attempt ROI stats on big images' - PR 230 Rdornier 'Import from csv fix' - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows' - PR 227 jburel 'Replace tostring by tobytes' - PR 225 will-moore 'Fix param names and assertion texts in tests' Merged PRs: - PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`' - PR 236 will-moore 'Rename text column to shape_text to be more explicit' Generated by OMERO-plugins-push#127 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/127/)' 2026-11-15 00:24:44,948 [ scc.git] DEBUG [detached HEAD d440736] merge master -Dorg -Ssuccess-only 2026-11-15 00:24:44,948 [ scc.git] DEBUG 24 files changed, 46 insertions(+), 46 deletions(-) 2026-11-15 00:24:44,949 [ scc.merge] INFO Repository: ome/omero-plugins 2026-11-15 00:24:44,950 [ scc.merge] INFO Already up to date. 2026-11-15 00:24:44,950 [ scc.merge] INFO 2026-11-15 00:24:44,950 [ scc.merge] INFO Merged PRs: 2026-11-15 00:24:44,950 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2026-11-15 00:24:44,950 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2026-11-15 00:24:44,950 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2026-11-15 00:24:44,950 [ scc.merge] INFO - PR 435 will-moore 'Add omero-biofilefinder as a submodule' 2026-11-15 00:24:44,950 [ scc.merge] INFO 2026-11-15 00:24:44,950 [ scc.merge] INFO Repository: ome/figure 2026-11-15 00:24:44,950 [ scc.merge] INFO Excluded PRs: 2026-11-15 00:24:44,950 [ scc.merge] INFO - PR 12 will-moore 'Browser based export' (exclude comment) 2026-11-15 00:24:44,950 [ scc.merge] INFO - PR 9 will-moore 'Save omezarr collection' (stage: draft) 2026-11-15 00:24:44,950 [ scc.merge] INFO Updating 3935875..41fd98f 2026-11-15 00:24:44,950 [ scc.merge] INFO Previously merged: 2026-11-15 00:24:44,950 [ scc.merge] INFO - PR 26 will-moore 'Remove python script' 2026-11-15 00:24:44,950 [ scc.merge] INFO - PR 5 will-moore 'Add sample_figures/ngff_images_figure.json' 2026-11-15 00:24:44,950 [ scc.merge] INFO - PR 24 Tom-TBT 'Label selection timeout & blur fix' 2026-11-15 00:24:44,950 [ scc.merge] INFO - PR 20 will-moore 'Hide export dropdown unless omero' 2026-11-15 00:24:44,950 [ scc.merge] INFO - PR 19 Rdornier 'Fix rectangle crop' 2026-11-15 00:24:44,950 [ scc.merge] INFO - PR 14 will-moore 'App served by omero env' 2026-11-15 00:24:44,950 [ scc.merge] INFO - PR 17 Rdornier 'Do not crop rotated panel at export' 2026-11-15 00:24:44,950 [ scc.merge] INFO - PR 15 will-moore 'Replace navbar 'OMERO' with 'figure' and OME logo' 2026-11-15 00:24:44,950 [ scc.merge] INFO 2026-11-15 00:24:44,950 [ scc.merge] INFO Merged PRs: 2026-11-15 00:24:44,950 [ scc.merge] INFO - PR 21 tcompa 'Avoid request to `WEBGATEWAYINDEX + "open_with/` if `APP_SERVED_BY_OMERO = false`' 2026-11-15 00:24:44,950 [ scc.merge] INFO - PR 30 will-moore 'License to BSD' 2026-11-15 00:24:44,950 [ scc.merge] INFO 2026-11-15 00:24:44,950 [ scc.merge] INFO Repository: ome/minimal-omero-client 2026-11-15 00:24:44,950 [ scc.merge] INFO Already up to date. 2026-11-15 00:24:44,950 [ scc.merge] INFO 2026-11-15 00:24:44,950 [ scc.merge] INFO 2026-11-15 00:24:44,950 [ scc.merge] INFO Repository: ome/omero-cli-duplicate 2026-11-15 00:24:44,950 [ scc.merge] INFO Excluded PRs: 2026-11-15 00:24:44,950 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment) 2026-11-15 00:24:44,950 [ scc.merge] INFO Already up to date. 2026-11-15 00:24:44,950 [ scc.merge] INFO 2026-11-15 00:24:44,950 [ scc.merge] INFO Merged PRs: 2026-11-15 00:24:44,950 [ scc.merge] INFO - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-11-15 00:24:44,950 [ scc.merge] INFO 2026-11-15 00:24:44,950 [ scc.merge] INFO Repository: ome/omero-cli-render 2026-11-15 00:24:44,950 [ scc.merge] INFO Excluded PRs: 2026-11-15 00:24:44,950 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft) 2026-11-15 00:24:44,950 [ scc.merge] INFO Updating ce6e13c..68b7303 2026-11-15 00:24:44,950 [ scc.merge] INFO Previously merged: 2026-11-15 00:24:44,950 [ scc.merge] INFO - PR 74 jburel 'Replace manual changelog by automated GH release step' 2026-11-15 00:24:44,950 [ scc.merge] INFO - PR 75 jburel 'Sort the new channels to ensure settings are set' 2026-11-15 00:24:44,950 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names' 2026-11-15 00:24:44,950 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands' 2026-11-15 00:24:44,950 [ scc.merge] INFO 2026-11-15 00:24:44,950 [ scc.merge] INFO Merged PRs: 2026-11-15 00:24:44,950 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate' 2026-11-15 00:24:44,950 [ scc.merge] INFO 2026-11-15 00:24:44,950 [ scc.merge] INFO Repository: ome/omero-cli-zarr 2026-11-15 00:24:44,950 [ scc.merge] INFO Excluded PRs: 2026-11-15 00:24:44,950 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft) 2026-11-15 00:24:44,950 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) 2026-11-15 00:24:44,950 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment) 2026-11-15 00:24:44,950 [ scc.merge] INFO Updating 11d3587..d5f88d8 2026-11-15 00:24:44,950 [ scc.merge] INFO Previously merged: 2026-11-15 00:24:44,950 [ scc.merge] INFO - PR 193 dominikl 'Only parse import uris if stated' 2026-11-15 00:24:44,950 [ scc.merge] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"' 2026-11-15 00:24:44,950 [ scc.merge] INFO - PR 194 will-moore 'Update uk1s3.embassy links to livingobjects' 2026-11-15 00:24:44,950 [ scc.merge] INFO - PR 197 pwalczysko 'Fix pragma' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 196 will-moore 'Storage options only if needed' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 192 jburel 'Set Omero pixel size' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 186 jburel 'Create release from tag' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 187 dominikl 'Fix target-by-name option' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 180 will-moore 'Import command' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 147 will-moore 'Name option' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-11-15 00:24:44,951 [ scc.merge] INFO 2026-11-15 00:24:44,951 [ scc.merge] INFO Conflicting PRs (not included): 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 174 will-moore 'Skip wells' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' 2026-11-15 00:24:44,951 [ scc.merge] INFO 2026-11-15 00:24:44,951 [ scc.merge] INFO Repository: ome/omero-figure 2026-11-15 00:24:44,951 [ scc.merge] INFO Excluded PRs: 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 715 Rdornier 'Fix VSI pyramids rendering' (user: Rdornier) 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 712 dependabot[bot] 'Bump vite from 8.0.16 to 8.1.6' (status: failure) 2026-11-15 00:24:44,951 [ scc.merge] INFO Updating 9cc36cde..3195c3df 2026-11-15 00:24:44,951 [ scc.merge] INFO Previously merged: 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 704 jburel 'Revert commit 49ae9c9' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 703 will-moore 'Readme remove rc' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 700 will-moore 'Fix parentheses in zoom level for loop for export script' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 692 will-moore 'colorbar lut background fix' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 701 will-moore 'bump nanoid to 3.3.18 with 'npm audit fix'' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 698 dependabot[bot] 'Bump dompurify from 3.4.9 to 3.4.13' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 697 dependabot[bot] 'Bump postcss from 8.5.15 to 8.5.25' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 695 dependabot[bot] 'Bump immutable from 5.1.6 to 5.1.9' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 693 dependabot[bot] 'Bump dompurify from 3.4.0 to 3.4.9' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 691 dependabot[bot] 'Bump esbuild and vite' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 686 will-moore 'Add note about zarr etc requirement for export script with zarr images' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 690 dependabot[bot] 'Bump postcss from 8.5.3 to 8.5.15' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 681 dependabot[bot] 'Bump dompurify from 3.3.2 to 3.4.0' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 688 will-moore 'app handles ?image=1 without needing /new?image=1' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 685 will-moore 'Fix static files links for release build' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 683 will-moore 'Add touch support for clicking on single panel' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 680 will-moore 'Use --pre install for export script in README' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 684 will-moore 'Fix PKG_VERSION fix in publish_pypi.yml' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 682 will-moore 'Enable pre-release rc workflow with bumpversion and publish to pypi' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 679 will-moore 'Remove commit from gist demoUrl to load latest, with livingobjects URLs' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 677 dependabot[bot] 'Bump vite from 6.4.1 to 6.4.2' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 666 will-moore 'Standalone app' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 676 dependabot[bot] 'Bump picomatch' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 669 will-moore 'Standalone python script' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 662 will-moore 'Export script handles OME-zarr images' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 663 will-moore 'Zarr' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 674 dependabot[bot] 'Bump immutable from 4.1.0 to 4.3.8' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 675 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.2' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 667 Tom-TBT 'Label suggestion interface' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 664 Nirkan 'Handle many channels ' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 661 Rdornier 'Align to grid - check if panels are already in the grid' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 649 jburel 'Replace manual changelog by automated GH release step' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 651 Rdornier 'More compliant align to grid' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 650 jburel 'Bump Python version' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…' 2026-11-15 00:24:44,951 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst' 2026-11-15 00:24:44,952 [ scc.merge] INFO - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1' 2026-11-15 00:24:44,952 [ scc.merge] INFO - PR 646 JensWendt 'fix word wrap of image names' 2026-11-15 00:24:44,952 [ scc.merge] INFO - PR 612 will-moore 'Script version' 2026-11-15 00:24:44,952 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets' 2026-11-15 00:24:44,952 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border' 2026-11-15 00:24:44,952 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature' 2026-11-15 00:24:44,952 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity' 2026-11-15 00:24:44,952 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4' 2026-11-15 00:24:44,952 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite' 2026-11-15 00:24:44,952 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622' 2026-11-15 00:24:44,952 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-11-15 00:24:44,952 [ scc.merge] INFO 2026-11-15 00:24:44,952 [ scc.merge] INFO Merged PRs: 2026-11-15 00:24:44,952 [ scc.merge] INFO - PR 706 will-moore 'Figure repo migration' 2026-11-15 00:24:44,952 [ scc.merge] INFO - PR 714 Rdornier 'Fix scalebar label' 2026-11-15 00:24:44,952 [ scc.merge] INFO 2026-11-15 00:24:44,952 [ scc.merge] INFO Conflicting PRs (not included): 2026-11-15 00:24:44,952 [ scc.merge] INFO - PR 711 dependabot[bot] 'Bump source-map-js from 1.2.1 to 1.2.2' 2026-11-15 00:24:44,952 [ scc.merge] INFO - PR 713 dependabot[bot] 'Bump dompurify from 3.4.13 to 3.4.17' 2026-11-15 00:24:44,952 [ scc.merge] INFO 2026-11-15 00:24:44,952 [ scc.merge] INFO Repository: ome/omero-fpbioimage 2026-11-15 00:24:44,952 [ scc.merge] INFO Already up to date. 2026-11-15 00:24:44,952 [ scc.merge] INFO 2026-11-15 00:24:44,952 [ scc.merge] INFO Merged PRs: 2026-11-15 00:24:44,952 [ scc.merge] INFO - PR 18 jburel 'default size z value' 2026-11-15 00:24:44,952 [ scc.merge] INFO - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-11-15 00:24:44,952 [ scc.merge] INFO 2026-11-15 00:24:44,952 [ scc.merge] INFO Repository: ome/omero-gallery 2026-11-15 00:24:44,952 [ scc.merge] INFO Already up to date. 2026-11-15 00:24:44,952 [ scc.merge] INFO 2026-11-15 00:24:44,952 [ scc.merge] INFO Merged PRs: 2026-11-15 00:24:44,952 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' 2026-11-15 00:24:44,952 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents' 2026-11-15 00:24:44,952 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' 2026-11-15 00:24:44,952 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' 2026-11-15 00:24:44,952 [ scc.merge] INFO 2026-11-15 00:24:44,952 [ scc.merge] INFO Conflicting PRs (not included): 2026-11-15 00:24:44,952 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' 2026-11-15 00:24:44,952 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' 2026-11-15 00:24:44,952 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' 2026-11-15 00:24:44,952 [ scc.merge] INFO 2026-11-15 00:24:44,952 [ scc.merge] INFO Repository: ome/omero-iviewer 2026-11-15 00:24:44,952 [ scc.merge] INFO Excluded PRs: 2026-11-15 00:24:44,952 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment) 2026-11-15 00:24:44,952 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment) 2026-11-15 00:24:44,952 [ scc.merge] INFO Updating 7a798cee..106ca787 2026-11-15 00:24:44,952 [ scc.merge] INFO Previously merged: 2026-11-15 00:24:44,952 [ scc.merge] INFO - PR 586 dependabot[bot] 'Bump serialize-javascript from 7.1.2 to 7.1.4' 2026-11-15 00:24:44,952 [ scc.merge] INFO - PR 585 dependabot[bot] 'Bump body-parser' 2026-11-15 00:24:44,952 [ scc.merge] INFO - PR 584 dependabot[bot] 'Bump qs from 6.16.0 to 6.16.2' 2026-11-15 00:24:44,952 [ scc.merge] INFO - PR 583 dependabot[bot] 'Bump follow-redirects from 1.16.0 to 1.16.3' 2026-11-15 00:24:44,952 [ scc.merge] INFO - PR 582 dependabot[bot] 'Bump postcss-selector-parser from 6.0.13 to 6.1.5' 2026-11-15 00:24:44,952 [ scc.merge] INFO - PR 581 dependabot[bot] 'Bump fast-uri from 3.1.8 to 3.1.9' 2026-11-15 00:24:44,952 [ scc.merge] INFO - PR 580 dependabot[bot] 'Bump launch-editor from 2.14.1 to 2.14.2' 2026-11-15 00:24:44,952 [ scc.merge] INFO - PR 578 dependabot[bot] 'Bump compression from 1.8.1 to 1.8.2' 2026-11-15 00:24:44,952 [ scc.merge] INFO - PR 577 dependabot[bot] 'Bump source-map-js from 1.2.1 to 1.2.2' 2026-11-15 00:24:44,952 [ scc.merge] INFO - PR 576 dependabot[bot] 'Bump shell-quote from 1.10.0 to 1.12.0' 2026-11-15 00:24:44,952 [ scc.merge] INFO - PR 575 dependabot[bot] 'Bump proxy-addr from 2.0.7 to 2.0.8' 2026-11-15 00:24:44,952 [ scc.merge] INFO - PR 497 will-moore 'ROI Tags' 2026-11-15 00:24:44,952 [ scc.merge] INFO - PR 574 dependabot[bot] 'Bump minimatch from 3.1.2 to 3.1.5' 2026-11-15 00:24:44,952 [ scc.merge] INFO - PR 573 dependabot[bot] 'Bump serialize-javascript and mocha' 2026-11-15 00:24:44,952 [ scc.merge] INFO - PR 572 dependabot[bot] 'Bump brace-expansion from 1.1.13 to 1.1.21' 2026-11-15 00:24:44,952 [ scc.merge] INFO - PR 571 dependabot[bot] 'Bump fast-uri from 3.1.7 to 3.1.8' 2026-11-15 00:24:44,952 [ scc.merge] INFO - PR 570 dependabot[bot] 'Bump engine.io from 6.6.9 to 6.6.11' 2026-11-15 00:24:44,952 [ scc.merge] INFO - PR 568 dependabot[bot] 'Bump webpack-dev-middleware from 8.1.0 to 8.3.0' 2026-11-15 00:24:44,952 [ scc.merge] INFO - PR 566 dependabot[bot] 'Bump js-yaml from 4.1.0 to 4.3.2' 2026-11-15 00:24:44,952 [ scc.merge] INFO - PR 565 dependabot[bot] 'Bump qs and body-parser' 2026-11-15 00:24:44,952 [ scc.merge] INFO - PR 564 dependabot[bot] 'Bump fast-uri from 3.1.5 to 3.1.7' 2026-11-15 00:24:44,952 [ scc.merge] INFO - PR 567 will-moore 'Basic fix of prev/next shapes when shapes sorted' 2026-11-15 00:24:44,952 [ scc.merge] INFO - PR 562 will-moore 'Keyboard select roi' 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 563 will-moore 'Use POST data for imgRdef save' 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 559 dependabot[bot] 'Bump js-yaml and mocha' 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 558 dependabot[bot] 'Bump fast-uri from 3.1.4 to 3.1.5' 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 557 dependabot[bot] 'Bump socket.io-parser from 4.2.6 to 4.2.7' 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 541 will-moore 'Only add channel to tile request string if active' 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 556 dependabot[bot] 'Bump webpack-dev-server from 5.2.6 to 6.0.0' 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 554 dependabot[bot] 'Bump http-proxy-middleware from 2.0.9 to 2.0.10' 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 553 dependabot[bot] 'Bump postcss from 8.5.10 to 8.5.25' 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 552 dependabot[bot] 'Bump tmp from 0.2.6 to 0.2.7' 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 551 dependabot[bot] 'Bump body-parser from 1.20.5 to 1.20.6' 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 550 dependabot[bot] 'Bump webpack-dev-server from 5.2.4 to 5.2.6' 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 549 dependabot[bot] 'Bump shell-quote from 1.8.4 to 1.10.0' 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 548 dependabot[bot] 'Bump fast-uri from 3.1.2 to 3.1.4' 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 547 dependabot[bot] 'Bump websocket-driver from 0.7.4 to 0.7.5' 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 540 dependabot[bot] 'Bump @babel/core from 7.5.4 to 7.29.6' 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 539 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter' 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 537 dependabot[bot] 'Bump launch-editor from 2.13.2 to 2.14.1' 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 535 dependabot[bot] 'Bump tmp and eslint' 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 527 PollenGeo 'Add grid overlay feature with configurable cell size and labels' 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 534 will-moore 'Fix settings.md link to master branch. Move iviewer redirect settings' 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 533 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter' 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 530 dependabot[bot] 'Bump webpack-dev-server from 4.13.2 to 5.2.4' 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 528 dependabot[bot] 'Bump fast-uri from 3.1.0 to 3.1.2' 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 529 will-moore 'Image id and roi id initial params' 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 526 will-moore 'Add keyboard handling for Left, Right, Up, Down Arrows to pan' 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 525 dependabot[bot] 'Bump postcss from 8.4.31 to 8.5.10' 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 524 dependabot[bot] 'Bump protocol-buffers-schema from 3.3.2 to 3.6.1' 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 523 dependabot[bot] 'Bump follow-redirects from 1.15.6 to 1.16.0' 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 522 dependabot[bot] 'Bump lodash from 4.17.21 to 4.18.1' 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 521 dependabot[bot] 'Bump brace-expansion from 1.1.11 to 1.1.13' 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 520 dependabot[bot] 'Bump node-forge from 1.3.1 to 1.4.0' 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 519 dependabot[bot] 'Bump picomatch from 2.3.1 to 2.3.2' 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 518 dependabot[bot] 'Bump ajv from 6.12.6 to 6.14.0' 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 514 Tom-TBT 'Fix where interpolate_pixels server config is read from' 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 513 jburel 'Bump Python version' 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 512 jburel 'Replace manual changelog by automated GH release step' 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure' 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 517 will-moore 'Fix roi link permissions' 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 516 dependabot[bot] 'Bump socket.io-parser from 4.2.4 to 4.2.6' 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 510 joshmoore 'Re-enable omero-test-infra' 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-11-15 00:24:44,953 [ scc.merge] INFO 2026-11-15 00:24:44,953 [ scc.merge] INFO Merged PRs: 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip' 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 587 will-moore 'Roi columns add remove' 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 588 will-moore 'Only show Tag link button if not a Tagset' 2026-11-15 00:24:44,953 [ scc.merge] INFO 2026-11-15 00:24:44,953 [ scc.merge] INFO Conflicting PRs (not included): 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 532 will-moore 'Zarr layers' 2026-11-15 00:24:44,953 [ scc.merge] INFO 2026-11-15 00:24:44,953 [ scc.merge] INFO Repository: ome/omero-mapr 2026-11-15 00:24:44,953 [ scc.merge] INFO Excluded PRs: 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment) 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient' (exclude comment) 2026-11-15 00:24:44,953 [ scc.merge] INFO Already up to date. 2026-11-15 00:24:44,953 [ scc.merge] INFO 2026-11-15 00:24:44,953 [ scc.merge] INFO Merged PRs: 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 97 JoshuaFortriede 'BUG Fix: use HTML value to replace HTML' 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 98 JoshuaFortriede 'use namespace with keys' 2026-11-15 00:24:44,953 [ scc.merge] INFO 2026-11-15 00:24:44,953 [ scc.merge] INFO Conflicting PRs (not included): 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-11-15 00:24:44,953 [ scc.merge] INFO 2026-11-15 00:24:44,953 [ scc.merge] INFO Repository: ome/omero-metadata 2026-11-15 00:24:44,953 [ scc.merge] INFO Updating 3cd120c..6a653e4 2026-11-15 00:24:44,953 [ scc.merge] INFO Previously merged: 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 95 sbesson 'Remove manual CHANGELOG in favor of automated GitHub releases' 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 94 sbesson 'Cap pandas to 2.x and clean up unused dependencies' 2026-11-15 00:24:44,953 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-11-15 00:24:44,954 [ scc.merge] INFO 2026-11-15 00:24:44,954 [ scc.merge] INFO Merged PRs: 2026-11-15 00:24:44,954 [ scc.merge] INFO - PR 92 dominikl 'add resolve_rois to projectwrapper' 2026-11-15 00:24:44,954 [ scc.merge] INFO 2026-11-15 00:24:44,954 [ scc.merge] INFO Conflicting PRs (not included): 2026-11-15 00:24:44,954 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate' 2026-11-15 00:24:44,954 [ scc.merge] INFO 2026-11-15 00:24:44,954 [ scc.merge] INFO Repository: ome/omero-parade 2026-11-15 00:24:44,954 [ scc.merge] INFO Excluded PRs: 2026-11-15 00:24:44,954 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft) 2026-11-15 00:24:44,954 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment) 2026-11-15 00:24:44,954 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment) 2026-11-15 00:24:44,954 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment) 2026-11-15 00:24:44,954 [ scc.merge] INFO Already up to date. 2026-11-15 00:24:44,954 [ scc.merge] INFO 2026-11-15 00:24:44,954 [ scc.merge] INFO Merged PRs: 2026-11-15 00:24:44,954 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' 2026-11-15 00:24:44,954 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' 2026-11-15 00:24:44,954 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-11-15 00:24:44,954 [ scc.merge] INFO 2026-11-15 00:24:44,954 [ scc.merge] INFO Repository: ome/omero-prometheus-tools 2026-11-15 00:24:44,954 [ scc.merge] INFO Already up to date. 2026-11-15 00:24:44,954 [ scc.merge] INFO 2026-11-15 00:24:44,954 [ scc.merge] INFO Merged PRs: 2026-11-15 00:24:44,954 [ scc.merge] INFO - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-11-15 00:24:44,954 [ scc.merge] INFO 2026-11-15 00:24:44,954 [ scc.merge] INFO Repository: ome/omero-rois 2026-11-15 00:24:44,954 [ scc.merge] INFO Excluded PRs: 2026-11-15 00:24:44,954 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) 2026-11-15 00:24:44,954 [ scc.merge] INFO Updating bdfeb5e..fc9ff96 2026-11-15 00:24:44,954 [ scc.merge] INFO Previously merged: 2026-11-15 00:24:44,954 [ scc.merge] INFO - PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml' 2026-11-15 00:24:44,954 [ scc.merge] INFO - PR 35 will-moore 'Add roi to array functions' 2026-11-15 00:24:44,954 [ scc.merge] INFO 2026-11-15 00:24:44,954 [ scc.merge] INFO 2026-11-15 00:24:44,954 [ scc.merge] INFO Repository: ome/omero-signup 2026-11-15 00:24:44,954 [ scc.merge] INFO Updating be76813..5a64360 2026-11-15 00:24:44,954 [ scc.merge] INFO Previously merged: 2026-11-15 00:24:44,954 [ scc.merge] INFO - PR 24 pwalczysko 'Upgrade framework, pip, certifi, actions, fix typo' 2026-11-15 00:24:44,954 [ scc.merge] INFO - PR 23 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.14.3 in /.github/workflows' 2026-11-15 00:24:44,954 [ scc.merge] INFO 2026-11-15 00:24:44,954 [ scc.merge] INFO Conflicting PRs (not included): 2026-11-15 00:24:44,954 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)' 2026-11-15 00:24:44,954 [ scc.merge] INFO 2026-11-15 00:24:44,954 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra 2026-11-15 00:24:44,954 [ scc.merge] INFO Excluded PRs: 2026-11-15 00:24:44,954 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles) 2026-11-15 00:24:44,954 [ scc.merge] INFO Updating cda3ec6..c8a0015 2026-11-15 00:24:44,954 [ scc.merge] INFO Previously merged: 2026-11-15 00:24:44,954 [ scc.merge] INFO - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT' 2026-11-15 00:24:44,954 [ scc.merge] INFO - PR 82 jburel 'Upgrade python' 2026-11-15 00:24:44,954 [ scc.merge] INFO - PR 81 erickmartins 'add ulimits to omero-server container' 2026-11-15 00:24:44,954 [ scc.merge] INFO 2026-11-15 00:24:44,954 [ scc.merge] INFO Merged PRs: 2026-11-15 00:24:44,954 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' 2026-11-15 00:24:44,954 [ scc.merge] INFO 2026-11-15 00:24:44,954 [ scc.merge] INFO Repository: ome/omero-upload 2026-11-15 00:24:44,954 [ scc.merge] INFO Already up to date. 2026-11-15 00:24:44,954 [ scc.merge] INFO 2026-11-15 00:24:44,954 [ scc.merge] INFO Merged PRs: 2026-11-15 00:24:44,954 [ scc.merge] INFO - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-11-15 00:24:44,954 [ scc.merge] INFO 2026-11-15 00:24:44,954 [ scc.merge] INFO Repository: ome/omero-virtual-microscope 2026-11-15 00:24:44,954 [ scc.merge] INFO Updating deab817..160d894 2026-11-15 00:24:44,954 [ scc.merge] INFO Previously merged: 2026-11-15 00:24:44,954 [ scc.merge] INFO - PR 20 jburel 'Build' 2026-11-15 00:24:44,954 [ scc.merge] INFO 2026-11-15 00:24:44,954 [ scc.merge] INFO Merged PRs: 2026-11-15 00:24:44,954 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-11-15 00:24:44,954 [ scc.merge] INFO 2026-11-15 00:24:44,955 [ scc.merge] INFO Repository: ome/omero-web-zarr 2026-11-15 00:24:44,955 [ scc.merge] INFO Excluded PRs: 2026-11-15 00:24:44,955 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft) 2026-11-15 00:24:44,955 [ scc.merge] INFO Updating 8f3c313..4e1e685 2026-11-15 00:24:44,955 [ scc.merge] INFO Previously merged: 2026-11-15 00:24:44,955 [ scc.merge] INFO - PR 23 lubianat 'Fix mix of .rst and .md on README' 2026-11-15 00:24:44,955 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints' 2026-11-15 00:24:44,955 [ scc.merge] INFO 2026-11-15 00:24:44,955 [ scc.merge] INFO Merged PRs: 2026-11-15 00:24:44,955 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import' 2026-11-15 00:24:44,955 [ scc.merge] INFO 2026-11-15 00:24:44,955 [ scc.merge] INFO Conflicting PRs (not included): 2026-11-15 00:24:44,955 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' 2026-11-15 00:24:44,955 [ scc.merge] INFO 2026-11-15 00:24:44,955 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror 2026-11-15 00:24:44,955 [ scc.merge] INFO Already up to date. 2026-11-15 00:24:44,955 [ scc.merge] INFO 2026-11-15 00:24:44,955 [ scc.merge] INFO Merged PRs: 2026-11-15 00:24:44,955 [ scc.merge] INFO - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-11-15 00:24:44,955 [ scc.merge] INFO 2026-11-15 00:24:44,955 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest 2026-11-15 00:24:44,955 [ scc.merge] INFO Already up to date. 2026-11-15 00:24:44,955 [ scc.merge] INFO 2026-11-15 00:24:44,955 [ scc.merge] INFO Merged PRs: 2026-11-15 00:24:44,955 [ scc.merge] INFO - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-11-15 00:24:44,955 [ scc.merge] INFO 2026-11-15 00:24:44,955 [ scc.merge] INFO Repository: ome/rOMERO-gateway 2026-11-15 00:24:44,955 [ scc.merge] INFO Already up to date. 2026-11-15 00:24:44,955 [ scc.merge] INFO 2026-11-15 00:24:44,955 [ scc.merge] INFO 2026-11-15 00:24:44,955 [ scc.merge] INFO Repository: ome/scripts 2026-11-15 00:24:44,955 [ scc.merge] INFO Updating 4b4c755..636540e 2026-11-15 00:24:44,955 [ scc.merge] INFO Previously merged: 2026-11-15 00:24:44,955 [ scc.merge] INFO - PR 235 will-moore 'Batch roi export tags' 2026-11-15 00:24:44,955 [ scc.merge] INFO - PR 231 jburel 'Create Release ' 2026-11-15 00:24:44,955 [ scc.merge] INFO - PR 229 Rdornier 'Adding support for custom user label' 2026-11-15 00:24:44,955 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images' 2026-11-15 00:24:44,955 [ scc.merge] INFO - PR 230 Rdornier 'Import from csv fix' 2026-11-15 00:24:44,955 [ scc.merge] INFO - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows' 2026-11-15 00:24:44,955 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes' 2026-11-15 00:24:44,955 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests' 2026-11-15 00:24:44,955 [ scc.merge] INFO 2026-11-15 00:24:44,955 [ scc.merge] INFO Merged PRs: 2026-11-15 00:24:44,955 [ scc.merge] INFO - PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`' 2026-11-15 00:24:44,955 [ scc.merge] INFO - PR 236 will-moore 'Rename text column to shape_text to be more explicit' 2026-11-15 00:24:44,955 [ scc.merge] INFO 2026-11-15 00:24:44,955 [ scc.merge] DEBUG Cleaning remote branches created for merging 2026-11-15 00:24:44,955 [ scc.git] DEBUG Calling 'git remote' 2026-11-15 00:24:44,967 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/figure 2026-11-15 00:24:44,968 [ scc.git] DEBUG Calling 'git remote' 2026-11-15 00:24:44,981 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:24:44,982 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client 2026-11-15 00:24:44,982 [ scc.git] DEBUG Calling 'git remote' 2026-11-15 00:24:44,994 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:24:44,994 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate 2026-11-15 00:24:44,994 [ scc.git] DEBUG Calling 'git remote' 2026-11-15 00:24:45,007 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:24:45,007 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render 2026-11-15 00:24:45,007 [ scc.git] DEBUG Calling 'git remote' 2026-11-15 00:24:45,021 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:24:45,021 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr 2026-11-15 00:24:45,021 [ scc.git] DEBUG Calling 'git remote' 2026-11-15 00:24:45,035 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:24:45,035 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure 2026-11-15 00:24:45,035 [ scc.git] DEBUG Calling 'git remote' 2026-11-15 00:24:45,050 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:24:45,050 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage 2026-11-15 00:24:45,050 [ scc.git] DEBUG Calling 'git remote' 2026-11-15 00:24:45,064 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:24:45,064 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery 2026-11-15 00:24:45,064 [ scc.git] DEBUG Calling 'git remote' 2026-11-15 00:24:45,078 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:24:45,078 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer 2026-11-15 00:24:45,079 [ scc.git] DEBUG Calling 'git remote' 2026-11-15 00:24:45,103 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:24:45,104 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr 2026-11-15 00:24:45,104 [ scc.git] DEBUG Calling 'git remote' 2026-11-15 00:24:45,117 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:24:45,117 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata 2026-11-15 00:24:45,118 [ scc.git] DEBUG Calling 'git remote' 2026-11-15 00:24:45,132 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:24:45,132 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade 2026-11-15 00:24:45,132 [ scc.git] DEBUG Calling 'git remote' 2026-11-15 00:24:45,146 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:24:45,146 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools 2026-11-15 00:24:45,146 [ scc.git] DEBUG Calling 'git remote' 2026-11-15 00:24:45,159 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:24:45,159 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois 2026-11-15 00:24:45,159 [ scc.git] DEBUG Calling 'git remote' 2026-11-15 00:24:45,174 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:24:45,174 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup 2026-11-15 00:24:45,174 [ scc.git] DEBUG Calling 'git remote' 2026-11-15 00:24:45,187 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:24:45,188 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra 2026-11-15 00:24:45,188 [ scc.git] DEBUG Calling 'git remote' 2026-11-15 00:24:45,200 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:24:45,200 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload 2026-11-15 00:24:45,200 [ scc.git] DEBUG Calling 'git remote' 2026-11-15 00:24:45,214 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:24:45,214 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope 2026-11-15 00:24:45,214 [ scc.git] DEBUG Calling 'git remote' 2026-11-15 00:24:45,226 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:24:45,227 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr 2026-11-15 00:24:45,227 [ scc.git] DEBUG Calling 'git remote' 2026-11-15 00:24:45,241 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:24:45,241 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror 2026-11-15 00:24:45,241 [ scc.git] DEBUG Calling 'git remote' 2026-11-15 00:24:45,253 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:24:45,253 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest 2026-11-15 00:24:45,253 [ scc.git] DEBUG Calling 'git remote' 2026-11-15 00:24:45,267 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:24:45,267 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway 2026-11-15 00:24:45,268 [ scc.git] DEBUG Calling 'git remote' 2026-11-15 00:24:45,281 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-15 00:24:45,281 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts 2026-11-15 00:24:45,281 [ scc.git] DEBUG Calling 'git remote' 2026-11-15 00:24:45,293 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push Update component versions python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/figure/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/figure/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: omero-cli-duplicate). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: omero-cli-duplicate). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: omero-cli-render). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: omero-cli-render). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:334: InformationOnly: Normalizing '0.4.2dev0' to '0.4.2.dev0' self.metadata.version = self._normalize_version(self.metadata.version) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: omero-fpbioimage). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:334: InformationOnly: Normalizing '0.4.2dev0' to '0.4.2.dev0' self.metadata.version = self._normalize_version(self.metadata.version) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: omero-fpbioimage). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: omero-gallery). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: omero-gallery). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: omero-mapr). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: omero-mapr). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() /home/omero/workspace/OMERO-plugins-push/omero-rois/setup.py:24: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. !! ******************************************************************************** Please remove any references to `setuptools.command.test` in all supported versions of the affected package. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. ******************************************************************************** !! from setuptools.command.test import test as test_command /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() /home/omero/workspace/OMERO-plugins-push/omero-rois/setup.py:24: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. !! ******************************************************************************** Please remove any references to `setuptools.command.test` in all supported versions of the affected package. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. ******************************************************************************** !! from setuptools.command.test import test as test_command /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: omero-signup). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: omero-signup). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() /home/omero/workspace/OMERO-plugins-push/omero-web-zarr/setup.py:5: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. !! ******************************************************************************** Please remove any references to `setuptools.command.test` in all supported versions of the affected package. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. ******************************************************************************** !! from setuptools.command.test import test as test_command /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /home/omero/workspace/OMERO-plugins-push/omero-web-zarr/setup.py:5: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. !! ******************************************************************************** Please remove any references to `setuptools.command.test` in all supported versions of the affected package. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. ******************************************************************************** !! from setuptools.command.test import test as test_command /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: omero-weberror). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: omero-weberror). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: omero-webtest). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: omero-webtest). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Updating omero-gateway from 5.10.0 to 5.11.1-SNAPSHOT grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Commit all component version changes Entering 'figure' Entering 'minimal-omero-client' Entering 'omero-cli-duplicate' Entering 'omero-cli-render' Entering 'omero-cli-zarr' Entering 'omero-figure' Entering 'omero-fpbioimage' Entering 'omero-gallery' Entering 'omero-iviewer' Entering 'omero-mapr' Entering 'omero-metadata' Entering 'omero-parade' Entering 'omero-prometheus-tools' Entering 'omero-rois' Entering 'omero-signup' Entering 'omero-test-infra' Entering 'omero-upload' Entering 'omero-virtual-microscope' Entering 'omero-web-zarr' Entering 'omero-weberror' Entering 'omero-webtest' Entering 'rOMERO-gateway' Entering 'scripts' Entering 'figure' HEAD detached from 3935875 nothing to commit, working tree clean Entering 'minimal-omero-client' [detached HEAD 798b00a] Update component versions 1 file changed, 1 insertion(+), 1 deletion(-) Entering 'omero-cli-duplicate' HEAD detached from 4777ef8 nothing to commit, working tree clean Entering 'omero-cli-render' HEAD detached from ce6e13c nothing to commit, working tree clean Entering 'omero-cli-zarr' HEAD detached from 11d3587 Untracked files: (use "git add <file>..." to include in what will be committed) .eggs/ nothing added to commit but untracked files present (use "git add" to track) Entering 'omero-figure' HEAD detached from 9cc36cde nothing to commit, working tree clean Entering 'omero-fpbioimage' HEAD detached from 3b6c05a nothing to commit, working tree clean Entering 'omero-gallery' HEAD detached from 2a621da nothing to commit, working tree clean Entering 'omero-iviewer' HEAD detached from 7a798cee nothing to commit, working tree clean Entering 'omero-mapr' HEAD detached from 0a557da nothing to commit, working tree clean Entering 'omero-metadata' HEAD detached from 3cd120c nothing to commit, working tree clean Entering 'omero-parade' HEAD detached from fb5ae86 nothing to commit, working tree clean Entering 'omero-prometheus-tools' HEAD detached from eb47378 nothing to commit, working tree clean Entering 'omero-rois' HEAD detached from bdfeb5e nothing to commit, working tree clean Entering 'omero-signup' HEAD detached from be76813 nothing to commit, working tree clean Entering 'omero-test-infra' HEAD detached from cda3ec6 nothing to commit, working tree clean Entering 'omero-upload' HEAD detached from 100f6ae nothing to commit, working tree clean Entering 'omero-virtual-microscope' HEAD detached from deab817 nothing to commit, working tree clean Entering 'omero-web-zarr' HEAD detached from 8f3c313 nothing to commit, working tree clean Entering 'omero-weberror' HEAD detached from 70b01ed nothing to commit, working tree clean Entering 'omero-webtest' HEAD detached from 5bfef29 nothing to commit, working tree clean Entering 'rOMERO-gateway' HEAD detached from 7b5d64d nothing to commit, working tree clean Entering 'scripts' HEAD detached from 4b4c755 nothing to commit, working tree clean [detached HEAD f6288c1] Update component versions 1 file changed, 1 insertion(+), 1 deletion(-) Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 2026-11-15 00:25:49,391 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 2026-11-15 00:25:59,531 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 2026-11-15 00:26:02,190 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2026-11-15 00:26:07,272 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2026-11-15 00:27:16,677 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci [Pipeline] archiveArtifacts Archiving artifacts [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS