![[Jenkins]](/jenkins/static/9e710227/images/svgs/logo.svg){kind=logo}
Started by user devspace [Pipeline] Start of Pipeline [Pipeline] node Running on testintegration in /home/omero/workspace/OMERO-plugins-push [Pipeline] { [Pipeline] library Loading library recursiveMerge@master Attempting to resolve master from remote references... > git --version # timeout=10 > git --version # 'git version 2.39.2' > git ls-remote -- https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Found match: refs/heads/master revision f061dff15033c5cd55249a383f52c15ca4a0e5cf The recommended git tool is: NONE No credentials specified > git rev-parse --resolve-git-dir /var/jenkins_home/jobs/OMERO-plugins-push/workspace@libs/3527f795de077758b82663f7b48798100750860c75e4099522d51863b08dc748/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Fetching without tags Fetching upstream changes from https://github.com/ome/jenkins-library-recursivemerge.git > git --version # timeout=10 > git --version # 'git version 2.39.2' > git fetch --no-tags --force --progress -- https://github.com/ome/jenkins-library-recursivemerge.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Checking out Revision f061dff15033c5cd55249a383f52c15ca4a0e5cf (master) > git config core.sparsecheckout # timeout=10 > git checkout -f f061dff15033c5cd55249a383f52c15ca4a0e5cf # timeout=10 Commit message: "Merge pull request #17 from jburel/python3" > git rev-list --no-walk f061dff15033c5cd55249a383f52c15ca4a0e5cf # timeout=10 [Pipeline] checkout The recommended git tool is: NONE No credentials specified Fetching changes from the remote Git repository > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-plugins-push/.git # timeout=10 > git config remote.origin.url https://github.com/ome/omero-plugins.git # timeout=10 Fetching upstream changes from https://github.com/ome/omero-plugins.git > git --version # timeout=10 > git --version # 'git version 2.43.5' > git fetch --tags --force --progress -- https://github.com/ome/omero-plugins.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Checking out Revision 40d03203329d993b707c1830c07afe288356a5b0 (refs/remotes/origin/master) > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 40d03203329d993b707c1830c07afe288356a5b0 # timeout=10 Commit message: "Merge pull request #394 from ome/dependabot/submodules/omero-figure-24444fe" > git rev-list --no-walk b41cfa91c1b22a62bc7ea8b5fa7259ef8d5d7b79 # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -fdx # timeout=10 > git submodule foreach --recursive git reset --hard # timeout=10 > git submodule foreach --recursive git clean -fdx # timeout=10 > git remote # timeout=10 > git submodule init # timeout=10 > git submodule sync # timeout=10 > git config --get remote.origin.url # timeout=10 > git submodule init # timeout=10 > git config -f .gitmodules --get-regexp ^submodule\.(.+)\.url # timeout=10 > git config --get submodule.omero-figure.url # timeout=10 > git config -f .gitmodules --get submodule.omero-figure.path # timeout=10 > git config --get submodule.minimal-omero-client.url # timeout=10 > git config -f .gitmodules --get submodule.minimal-omero-client.path # timeout=10 > git config --get submodule.scripts.url # timeout=10 > git config -f .gitmodules --get submodule.scripts.path # timeout=10 > git config --get submodule.omero-test-infra.url # timeout=10 > git config -f .gitmodules --get submodule.omero-test-infra.path # timeout=10 > git config --get submodule.omero-prometheus-tools.url # timeout=10 > git config -f .gitmodules --get submodule.omero-prometheus-tools.path # timeout=10 > git config --get submodule.omero-parade.url # timeout=10 > git config -f .gitmodules --get submodule.omero-parade.path # timeout=10 > git config --get submodule.omero-mapr.url # timeout=10 > git config -f .gitmodules --get submodule.omero-mapr.path # timeout=10 > git config --get submodule.omero-fpbioimage.url # timeout=10 > git config -f .gitmodules --get submodule.omero-fpbioimage.path # timeout=10 > git config --get submodule.omero-iviewer.url # timeout=10 > git config -f .gitmodules --get submodule.omero-iviewer.path # timeout=10 > git config --get submodule.omero-gallery.url # timeout=10 > git config -f .gitmodules --get submodule.omero-gallery.path # timeout=10 > git config --get submodule.rOMERO-gateway.url # timeout=10 > git config -f .gitmodules --get submodule.rOMERO-gateway.path # timeout=10 > git config --get submodule.omero-weberror.url # timeout=10 > git config -f .gitmodules --get submodule.omero-weberror.path # timeout=10 > git config --get submodule.omero-cli-render.url # timeout=10 > git config -f .gitmodules --get submodule.omero-cli-render.path # timeout=10 > git config --get submodule.omero-cli-duplicate.url # timeout=10 > git config -f .gitmodules --get submodule.omero-cli-duplicate.path # timeout=10 > git config --get submodule.omero-metadata.url # timeout=10 > git config -f .gitmodules --get submodule.omero-metadata.path # timeout=10 > git config --get submodule.omero-webtest.url # timeout=10 > git config -f .gitmodules --get submodule.omero-webtest.path # timeout=10 > git config --get submodule.omero-upload.url # timeout=10 > git config -f .gitmodules --get submodule.omero-upload.path # timeout=10 > git config --get submodule.omero-virtual-microscope.url # timeout=10 > git config -f .gitmodules --get submodule.omero-virtual-microscope.path # timeout=10 > git config --get submodule.omero-rois.url # timeout=10 > git config -f .gitmodules --get submodule.omero-rois.path # timeout=10 > git config --get submodule.omero-signup.url # timeout=10 > git config -f .gitmodules --get submodule.omero-signup.path # timeout=10 > git config --get submodule.omero-web-zarr.url # timeout=10 > git config -f .gitmodules --get submodule.omero-web-zarr.path # timeout=10 > git config --get submodule.omero-cli-zarr.url # timeout=10 > git config -f .gitmodules --get submodule.omero-cli-zarr.path # timeout=10 > git submodule update --init --recursive omero-figure # timeout=10 > git submodule update --init --recursive minimal-omero-client # timeout=10 > git submodule update --init --recursive scripts # timeout=10 > git submodule update --init --recursive omero-test-infra # timeout=10 > git submodule update --init --recursive omero-prometheus-tools # timeout=10 > git submodule update --init --recursive omero-parade # timeout=10 > git submodule update --init --recursive omero-mapr # timeout=10 > git submodule update --init --recursive omero-fpbioimage # timeout=10 > git submodule update --init --recursive omero-iviewer # timeout=10 > git submodule update --init --recursive omero-gallery # timeout=10 > git submodule update --init --recursive rOMERO-gateway # timeout=10 > git submodule update --init --recursive omero-weberror # timeout=10 > git submodule update --init --recursive omero-cli-render # timeout=10 > git submodule update --init --recursive omero-cli-duplicate # timeout=10 > git submodule update --init --recursive omero-metadata # timeout=10 [Pipeline] pwd [Pipeline] copyArtifacts Copied 1 artifact from "OMERO-build-push" build number 223 [Pipeline] sh + pushd build ~/workspace/OMERO-plugins-push/build ~/workspace/OMERO-plugins-push + curl -sfL https://github.com/ome/build-infra/archive/master.tar.gz + tar -zxf - > git submodule update --init --recursive omero-webtest # timeout=10 > git submodule update --init --recursive omero-upload # timeout=10 > git submodule update --init --recursive omero-virtual-microscope # timeout=10 > git submodule update --init --recursive omero-rois # timeout=10 > git submodule update --init --recursive omero-signup # timeout=10 > git submodule update --init --recursive omero-web-zarr # timeout=10 > git submodule update --init --recursive omero-cli-zarr # timeout=10 + popd ~/workspace/OMERO-plugins-push + python3 -m venv build/venv + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ '[' -n /bin/bash -o -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-plugins-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-plugins-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ '[' -n /bin/bash -o -n '' ']' ++ hash -r + python3 -m pip install -U pip Requirement already satisfied: pip in ./build/venv/lib/python3.9/site-packages (21.2.3) Collecting pip Using cached pip-24.2-py3-none-any.whl (1.8 MB) Installing collected packages: pip Attempting uninstall: pip Found existing installation: pip 21.2.3 Uninstalling pip-21.2.3: Successfully uninstalled pip-21.2.3 Successfully installed pip-24.2 + python3 -m pip install scc Collecting scc Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB) Collecting PyGithub>=1.54 (from scc) Using cached PyGithub-2.4.0-py3-none-any.whl.metadata (3.9 kB) Collecting PyYAML>=5.1 (from scc) Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) Collecting future (from scc) Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) Collecting ruamel.yaml (from scc) Using cached ruamel.yaml-0.18.6-py3-none-any.whl.metadata (23 kB) Collecting ruamel.yaml.jinja2 (from scc) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB) Collecting six (from scc) Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB) Collecting urllib3<2 (from scc) Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB) Collecting yaclifw<0.3,>=0.2.0 (from scc) Using cached yaclifw-0.2.0-py3-none-any.whl Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc) Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl.metadata (8.6 kB) Collecting requests>=2.14.0 (from PyGithub>=1.54->scc) Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB) Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached PyJWT-2.9.0-py3-none-any.whl.metadata (3.0 kB) Collecting typing-extensions>=4.0.0 (from PyGithub>=1.54->scc) Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB) Collecting Deprecated (from PyGithub>=1.54->scc) Using cached Deprecated-1.2.14-py2.py3-none-any.whl.metadata (5.4 kB) Collecting ruamel.yaml.clib>=0.2.7 (from ruamel.yaml->scc) Using cached ruamel.yaml.clib-0.2.12-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.7 kB) Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cryptography-43.0.3-cp39-abi3-manylinux_2_28_x86_64.whl.metadata (5.4 kB) Collecting cffi>=1.4.1 (from pynacl>=1.4.0->PyGithub>=1.54->scc) Using cached cffi-1.17.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (1.5 kB) Collecting charset-normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached charset_normalizer-3.4.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (34 kB) Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached idna-3.10-py3-none-any.whl.metadata (10 kB) Collecting certifi>=2017.4.17 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached certifi-2024.8.30-py3-none-any.whl.metadata (2.2 kB) Collecting wrapt<2,>=1.10 (from Deprecated->PyGithub>=1.54->scc) Using cached wrapt-1.16.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB) Collecting pycparser (from cffi>=1.4.1->pynacl>=1.4.0->PyGithub>=1.54->scc) Using cached pycparser-2.22-py3-none-any.whl.metadata (943 bytes) Using cached scc-0.20.0-py3-none-any.whl (48 kB) Using cached PyGithub-2.4.0-py3-none-any.whl (362 kB) Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (737 kB) Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) Using cached future-1.0.0-py3-none-any.whl (491 kB) Using cached ruamel.yaml-0.18.6-py3-none-any.whl (117 kB) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB) Using cached six-1.16.0-py2.py3-none-any.whl (11 kB) Using cached PyJWT-2.9.0-py3-none-any.whl (22 kB) Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (856 kB) Using cached requests-2.32.3-py3-none-any.whl (64 kB) Using cached ruamel.yaml.clib-0.2.12-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (724 kB) Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB) Using cached Deprecated-1.2.14-py2.py3-none-any.whl (9.6 kB) Using cached certifi-2024.8.30-py3-none-any.whl (167 kB) Using cached cffi-1.17.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (445 kB) Using cached charset_normalizer-3.4.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (144 kB) Using cached cryptography-43.0.3-cp39-abi3-manylinux_2_28_x86_64.whl (4.0 MB) Using cached idna-3.10-py3-none-any.whl (70 kB) Using cached wrapt-1.16.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (80 kB) Using cached pycparser-2.22-py3-none-any.whl (117 kB) Installing collected packages: wrapt, urllib3, typing-extensions, six, ruamel.yaml.clib, PyYAML, pyjwt, pycparser, idna, future, charset-normalizer, certifi, yaclifw, ruamel.yaml, requests, Deprecated, cffi, ruamel.yaml.jinja2, pynacl, cryptography, PyGithub, scc Successfully installed Deprecated-1.2.14 PyGithub-2.4.0 PyYAML-6.0.2 certifi-2024.8.30 cffi-1.17.1 charset-normalizer-3.4.0 cryptography-43.0.3 future-1.0.0 idna-3.10 pycparser-2.22 pyjwt-2.9.0 pynacl-1.5.0 requests-2.32.3 ruamel.yaml-0.18.6 ruamel.yaml.clib-0.2.12 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.16.0 typing-extensions-4.12.2 urllib3-1.26.20 wrapt-1.16.0 yaclifw-0.2.0 [Pipeline] sh + export BASE_REPO=omero-plugins.git + BASE_REPO=omero-plugins.git + export BASE_BRANCH=master + BASE_BRANCH=master + export VERSION_LOG=/home/omero/workspace/OMERO-plugins-push/build/version.tsv + VERSION_LOG=/home/omero/workspace/OMERO-plugins-push/build/version.tsv + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ '[' -n /bin/bash -o -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-plugins-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-plugins-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ '[' -n /bin/bash -o -n '' ']' ++ hash -r + '[' merge_ci '!=' null ']' + export PUSH_BRANCH=merge_ci + PUSH_BRANCH=merge_ci + '[' null '!=' null ']' + export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment' + STATUS=success-only + MERGE_OPTIONS='-vvv --no-ask --reset --comment' + bash build/build-infra-master/recursive-merge Merge base repository (no submodule updates) 2024-10-24 13:07:49,245 [ scc.config] DEBUG Found github.token 2024-10-24 13:07:49,248 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2024-10-24 13:07:49,422 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:07:49,820 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:07:50,200 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2024-10-24 13:07:50,200 [ scc.gh] DEBUG 4702 remaining from 5000 (Reset at 13:10 2024-10-24 13:07:50,201 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-10-24 13:07:50,204 [ scc.git] DEBUG Check current status 2024-10-24 13:07:50,205 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-10-24 13:07:50,208 [ scc.git] DEBUG 40d0320 Merge pull request #394 from ome/dependabot/submodules/omero-figure-24444fe 2024-10-24 13:07:50,208 [ scc.git] DEBUG Calling 'git submodule status' 2024-10-24 13:07:50,249 [ scc.git] DEBUG 4628e82a32d8af458d9fa621303b24a0a860378f minimal-omero-client (remotes/origin/HEAD) 2024-10-24 13:07:50,251 [ scc.git] DEBUG 027b3e695d5b225955918c53ef8c81e0d5bc6bf4 omero-cli-duplicate (v0.4.0-12-g027b3e6) 2024-10-24 13:07:50,254 [ scc.git] DEBUG 173cac06778e91d3a13b6084c62d95108290cb9f omero-cli-render (v0.8.1-1-g173cac0) 2024-10-24 13:07:50,257 [ scc.git] DEBUG 9b73dd9dbdeb36dbdb675b02661d253052fca0f0 omero-cli-zarr (v0.5.5-7-g9b73dd9) 2024-10-24 13:07:52,519 [ scc.git] DEBUG 24444fe6bf35af27230c28e466f9819b08853118 omero-figure (v7.1.0-90-g24444fe6) 2024-10-24 13:07:52,521 [ scc.git] DEBUG e5b3ca3a5aba41c950d2427b1a05ee0ced55670e omero-fpbioimage (v0.4.1-1-ge5b3ca3) 2024-10-24 13:07:52,524 [ scc.git] DEBUG 56f443528edd3b7127635933cb573b528b57acda omero-gallery (v3.4.3-1-g56f4435) 2024-10-24 13:07:52,577 [ scc.git] DEBUG a8f380fabfd839b946e5a5f613f1fce07abb3815 omero-iviewer (v0.14.0-3-ga8f380f) 2024-10-24 13:07:52,580 [ scc.git] DEBUG 9631b155c44fcec9986b03315dd9f5c5c64aa7eb omero-mapr (v0.5.2-7-g9631b15) 2024-10-24 13:07:52,582 [ scc.git] DEBUG e2fc5ec5aeb38953ac2a12cb7c980aeee5bf306c omero-metadata (v0.12.0-15-ge2fc5ec) 2024-10-24 13:07:52,585 [ scc.git] DEBUG 5d441c250912a98d8a87771f78dde8b54c8e12d6 omero-parade (v0.2.4-1-g5d441c2) 2024-10-24 13:07:52,587 [ scc.git] DEBUG 18bccb69f16cfeee98628ff2ae14ab829b87a23c omero-prometheus-tools (v0.2.3-4-g18bccb6) 2024-10-24 13:07:52,590 [ scc.git] DEBUG 5c752d5c25fee07c1835036d6a90bd97faeb0720 omero-rois (v0.2.0-63-g5c752d5) 2024-10-24 13:07:52,593 [ scc.git] DEBUG c8610dba25f39870a09fa5401c735fb3be85a319 omero-signup (v0.3.3-1-gc8610db) 2024-10-24 13:07:52,603 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6) 2024-10-24 13:07:52,606 [ scc.git] DEBUG aca9e9cad82a08e2e3d37d71cb374b37c90e4693 omero-upload (v0.4.0-8-gaca9e9c) 2024-10-24 13:07:52,608 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2024-10-24 13:07:52,610 [ scc.git] DEBUG 67bb245b8b08709e04a8bf52b02de2298a029a94 omero-web-zarr (v0.1.1-1-g67bb245) 2024-10-24 13:07:52,613 [ scc.git] DEBUG adfa132f23a1b12ca2d2ec53ebba54c760fe2d07 omero-weberror (v0.4.1-1-gadfa132) 2024-10-24 13:07:52,615 [ scc.git] DEBUG 8da48e116184f1ebb28aa9629748afdfb0282ae5 omero-webtest (v0.4.2-1-g8da48e1) 2024-10-24 13:07:52,617 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2024-10-24 13:07:52,621 [ scc.git] DEBUG 312afbed633613e1f728a1fe9eaac096e54318e0 scripts (v5.8.3-1-g312afbe) 2024-10-24 13:07:52,625 [ scc.config] DEBUG Found remote.origin.url 2024-10-24 13:07:52,855 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins HTTP/1.1" 200 None 2024-10-24 13:07:53,277 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-10-24 13:07:53,676 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-10-24 13:07:54,090 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-10-24 13:07:54,496 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-10-24 13:07:54,497 [ scc.git] DEBUG Resetting... 2024-10-24 13:07:54,497 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2024-10-24 13:07:54,505 [ scc.git] DEBUG HEAD is now at 40d0320 Merge pull request #394 from ome/dependabot/submodules/omero-figure-24444fe 2024-10-24 13:07:54,505 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2024-10-24 13:07:54,593 [ scc.git] DEBUG Check current status 2024-10-24 13:07:54,594 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-10-24 13:07:54,597 [ scc.git] DEBUG 40d0320 Merge pull request #394 from ome/dependabot/submodules/omero-figure-24444fe 2024-10-24 13:07:54,597 [ scc.git] DEBUG Calling 'git submodule status' 2024-10-24 13:07:54,637 [ scc.git] DEBUG 4628e82a32d8af458d9fa621303b24a0a860378f minimal-omero-client (remotes/origin/HEAD) 2024-10-24 13:07:54,639 [ scc.git] DEBUG 027b3e695d5b225955918c53ef8c81e0d5bc6bf4 omero-cli-duplicate (v0.4.0-12-g027b3e6) 2024-10-24 13:07:54,642 [ scc.git] DEBUG 173cac06778e91d3a13b6084c62d95108290cb9f omero-cli-render (v0.8.1-1-g173cac0) 2024-10-24 13:07:54,645 [ scc.git] DEBUG 9b73dd9dbdeb36dbdb675b02661d253052fca0f0 omero-cli-zarr (v0.5.5-7-g9b73dd9) 2024-10-24 13:07:54,654 [ scc.git] DEBUG 24444fe6bf35af27230c28e466f9819b08853118 omero-figure (v7.1.0-90-g24444fe6) 2024-10-24 13:07:54,656 [ scc.git] DEBUG e5b3ca3a5aba41c950d2427b1a05ee0ced55670e omero-fpbioimage (v0.4.1-1-ge5b3ca3) 2024-10-24 13:07:54,659 [ scc.git] DEBUG 56f443528edd3b7127635933cb573b528b57acda omero-gallery (v3.4.3-1-g56f4435) 2024-10-24 13:07:54,662 [ scc.git] DEBUG a8f380fabfd839b946e5a5f613f1fce07abb3815 omero-iviewer (v0.14.0-3-ga8f380f) 2024-10-24 13:07:54,664 [ scc.git] DEBUG 9631b155c44fcec9986b03315dd9f5c5c64aa7eb omero-mapr (v0.5.2-7-g9631b15) 2024-10-24 13:07:54,667 [ scc.git] DEBUG e2fc5ec5aeb38953ac2a12cb7c980aeee5bf306c omero-metadata (v0.12.0-15-ge2fc5ec) 2024-10-24 13:07:54,669 [ scc.git] DEBUG 5d441c250912a98d8a87771f78dde8b54c8e12d6 omero-parade (v0.2.4-1-g5d441c2) 2024-10-24 13:07:54,672 [ scc.git] DEBUG 18bccb69f16cfeee98628ff2ae14ab829b87a23c omero-prometheus-tools (v0.2.3-4-g18bccb6) 2024-10-24 13:07:54,674 [ scc.git] DEBUG 5c752d5c25fee07c1835036d6a90bd97faeb0720 omero-rois (v0.2.0-63-g5c752d5) 2024-10-24 13:07:54,677 [ scc.git] DEBUG c8610dba25f39870a09fa5401c735fb3be85a319 omero-signup (v0.3.3-1-gc8610db) 2024-10-24 13:07:54,680 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6) 2024-10-24 13:07:54,682 [ scc.git] DEBUG aca9e9cad82a08e2e3d37d71cb374b37c90e4693 omero-upload (v0.4.0-8-gaca9e9c) 2024-10-24 13:07:54,684 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2024-10-24 13:07:54,687 [ scc.git] DEBUG 67bb245b8b08709e04a8bf52b02de2298a029a94 omero-web-zarr (v0.1.1-1-g67bb245) 2024-10-24 13:07:54,689 [ scc.git] DEBUG adfa132f23a1b12ca2d2ec53ebba54c760fe2d07 omero-weberror (v0.4.1-1-gadfa132) 2024-10-24 13:07:54,691 [ scc.git] DEBUG 8da48e116184f1ebb28aa9629748afdfb0282ae5 omero-webtest (v0.4.2-1-g8da48e1) 2024-10-24 13:07:54,694 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2024-10-24 13:07:54,697 [ scc.git] DEBUG 312afbed633613e1f728a1fe9eaac096e54318e0 scripts (v5.8.3-1-g312afbe) 2024-10-24 13:07:54,698 [ scc.merge] INFO Merging Pull Request(s) based on master 2024-10-24 13:07:54,698 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2024-10-24 13:07:54,698 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2024-10-24 13:07:54,698 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2024-10-24 13:07:54,698 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2024-10-24 13:07:54,698 [ scc.repo] DEBUG ## PRs found: 2024-10-24 13:07:54,923 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/pulls HTTP/1.1" 200 2 2024-10-24 13:07:54,924 [ scc.repo] DEBUG ## Branches found: 2024-10-24 13:07:54,924 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:07:54,924 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:07:54,927 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-10-24 13:07:54,930 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-10-24 13:07:54,930 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-10-24 13:07:54,934 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-10-24 13:07:54,937 [ scc.git] DEBUG Already up to date. 2024-10-24 13:07:54,938 [ scc.git] DEBUG ## Unique users: [] 2024-10-24 13:07:54,938 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:07:54,938 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:07:54,941 [ scc.git] DEBUG Calling 'git submodule update' 2024-10-24 13:07:54,985 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:07:54,985 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:07:54,988 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-10-24 13:07:57,172 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff5063278b0> has no local changes 2024-10-24 13:07:57,172 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone Repository: ome/omero-plugins Already up to date. Generated by OMERO-plugins-push#222 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/222/)' 2024-10-24 13:07:57,237 [ scc.git] DEBUG [detached HEAD 1066161] merge master -Dorg -Snone 2024-10-24 13:07:57,238 [ scc.merge] INFO Repository: ome/omero-plugins 2024-10-24 13:07:57,238 [ scc.merge] INFO Already up to date. 2024-10-24 13:07:57,238 [ scc.merge] INFO 2024-10-24 13:07:57,238 [ scc.merge] INFO 2024-10-24 13:07:57,238 [ scc.merge] DEBUG Cleaning remote branches created for merging 2024-10-24 13:07:57,238 [ scc.git] DEBUG Calling 'git remote' Synchronizing submodule url for 'minimal-omero-client' Synchronizing submodule url for 'omero-cli-duplicate' Synchronizing submodule url for 'omero-cli-render' Synchronizing submodule url for 'omero-cli-zarr' Synchronizing submodule url for 'omero-figure' Synchronizing submodule url for 'omero-fpbioimage' Synchronizing submodule url for 'omero-gallery' Synchronizing submodule url for 'omero-iviewer' Synchronizing submodule url for 'omero-mapr' Synchronizing submodule url for 'omero-metadata' Synchronizing submodule url for 'omero-parade' Synchronizing submodule url for 'omero-prometheus-tools' Synchronizing submodule url for 'omero-rois' Synchronizing submodule url for 'omero-signup' Synchronizing submodule url for 'omero-test-infra' Synchronizing submodule url for 'omero-upload' Synchronizing submodule url for 'omero-virtual-microscope' Synchronizing submodule url for 'omero-web-zarr' Synchronizing submodule url for 'omero-weberror' Synchronizing submodule url for 'omero-webtest' Synchronizing submodule url for 'rOMERO-gateway' Synchronizing submodule url for 'scripts' Merge all submodules using repository configuration: base-branch: master submodules: scripts: base-branch: develop omero-web-zarr: base-branch: main 2024-10-24 13:08:05,230 [ scc.config] DEBUG Found github.token 2024-10-24 13:08:05,233 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2024-10-24 13:08:05,437 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:08:05,815 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:08:06,231 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2024-10-24 13:08:06,232 [ scc.gh] DEBUG 4694 remaining from 5000 (Reset at 13:10 2024-10-24 13:08:06,232 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-10-24 13:08:06,236 [ scc.git] DEBUG Check current status 2024-10-24 13:08:06,236 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-10-24 13:08:06,239 [ scc.git] DEBUG 1066161 merge master -Dorg -Snone 2024-10-24 13:08:06,239 [ scc.git] DEBUG Calling 'git submodule status' 2024-10-24 13:08:06,282 [ scc.git] DEBUG 4628e82a32d8af458d9fa621303b24a0a860378f minimal-omero-client (remotes/origin/HEAD) 2024-10-24 13:08:06,284 [ scc.git] DEBUG 027b3e695d5b225955918c53ef8c81e0d5bc6bf4 omero-cli-duplicate (v0.4.0-12-g027b3e6) 2024-10-24 13:08:06,287 [ scc.git] DEBUG 173cac06778e91d3a13b6084c62d95108290cb9f omero-cli-render (v0.8.1-1-g173cac0) 2024-10-24 13:08:06,290 [ scc.git] DEBUG 9b73dd9dbdeb36dbdb675b02661d253052fca0f0 omero-cli-zarr (v0.5.5-7-g9b73dd9) 2024-10-24 13:08:06,299 [ scc.git] DEBUG 24444fe6bf35af27230c28e466f9819b08853118 omero-figure (v7.1.0-90-g24444fe6) 2024-10-24 13:08:06,302 [ scc.git] DEBUG e5b3ca3a5aba41c950d2427b1a05ee0ced55670e omero-fpbioimage (v0.4.1-1-ge5b3ca3) 2024-10-24 13:08:06,305 [ scc.git] DEBUG 56f443528edd3b7127635933cb573b528b57acda omero-gallery (v3.4.3-1-g56f4435) 2024-10-24 13:08:06,308 [ scc.git] DEBUG a8f380fabfd839b946e5a5f613f1fce07abb3815 omero-iviewer (v0.14.0-3-ga8f380f) 2024-10-24 13:08:06,311 [ scc.git] DEBUG 9631b155c44fcec9986b03315dd9f5c5c64aa7eb omero-mapr (v0.5.2-7-g9631b15) 2024-10-24 13:08:06,313 [ scc.git] DEBUG e2fc5ec5aeb38953ac2a12cb7c980aeee5bf306c omero-metadata (v0.12.0-15-ge2fc5ec) 2024-10-24 13:08:06,316 [ scc.git] DEBUG 5d441c250912a98d8a87771f78dde8b54c8e12d6 omero-parade (v0.2.4-1-g5d441c2) 2024-10-24 13:08:06,318 [ scc.git] DEBUG 18bccb69f16cfeee98628ff2ae14ab829b87a23c omero-prometheus-tools (v0.2.3-4-g18bccb6) 2024-10-24 13:08:06,321 [ scc.git] DEBUG 5c752d5c25fee07c1835036d6a90bd97faeb0720 omero-rois (v0.2.0-63-g5c752d5) 2024-10-24 13:08:06,324 [ scc.git] DEBUG c8610dba25f39870a09fa5401c735fb3be85a319 omero-signup (v0.3.3-1-gc8610db) 2024-10-24 13:08:06,327 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6) 2024-10-24 13:08:06,329 [ scc.git] DEBUG aca9e9cad82a08e2e3d37d71cb374b37c90e4693 omero-upload (v0.4.0-8-gaca9e9c) 2024-10-24 13:08:06,331 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2024-10-24 13:08:06,334 [ scc.git] DEBUG 67bb245b8b08709e04a8bf52b02de2298a029a94 omero-web-zarr (v0.1.1-1-g67bb245) 2024-10-24 13:08:06,336 [ scc.git] DEBUG adfa132f23a1b12ca2d2ec53ebba54c760fe2d07 omero-weberror (v0.4.1-1-gadfa132) 2024-10-24 13:08:06,339 [ scc.git] DEBUG 8da48e116184f1ebb28aa9629748afdfb0282ae5 omero-webtest (v0.4.2-1-g8da48e1) 2024-10-24 13:08:06,341 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2024-10-24 13:08:06,344 [ scc.git] DEBUG 312afbed633613e1f728a1fe9eaac096e54318e0 scripts (v5.8.3-1-g312afbe) 2024-10-24 13:08:06,348 [ scc.config] DEBUG Found remote.origin.url 2024-10-24 13:08:06,348 [ scc.git] DEBUG Reading repository configuration from repositories.yml 2024-10-24 13:08:06,350 [ scc.git] DEBUG Repository configuration: base-branch: master submodules: omero-web-zarr: base-branch: main scripts: base-branch: develop 2024-10-24 13:08:06,697 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins HTTP/1.1" 200 None 2024-10-24 13:08:07,161 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-10-24 13:08:07,566 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-10-24 13:08:07,992 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-10-24 13:08:08,406 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-10-24 13:08:08,407 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-10-24 13:08:08,471 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client 2024-10-24 13:08:08,471 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-10-24 13:08:08,474 [ scc.git] DEBUG Check current status 2024-10-24 13:08:08,474 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-10-24 13:08:08,477 [ scc.git] DEBUG 4628e82 Merge pull request #65 from jburel/gateway_5_9_1 2024-10-24 13:08:08,477 [ scc.git] DEBUG Calling 'git submodule status' 2024-10-24 13:08:08,513 [ scc.config] DEBUG Found remote.origin.url 2024-10-24 13:08:08,900 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/minimal-omero-client HTTP/1.1" 200 None 2024-10-24 13:08:09,365 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-10-24 13:08:09,775 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-10-24 13:08:10,179 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-10-24 13:08:10,580 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-10-24 13:08:10,580 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-10-24 13:08:10,616 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:08:10,617 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate 2024-10-24 13:08:10,617 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-10-24 13:08:10,621 [ scc.git] DEBUG Check current status 2024-10-24 13:08:10,621 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-10-24 13:08:10,625 [ scc.git] DEBUG 027b3e6 Merge pull request #24 from sbesson/future_pytest 2024-10-24 13:08:10,625 [ scc.git] DEBUG Calling 'git submodule status' 2024-10-24 13:08:10,661 [ scc.config] DEBUG Found remote.origin.url 2024-10-24 13:08:11,069 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate HTTP/1.1" 200 None 2024-10-24 13:08:11,554 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-10-24 13:08:11,959 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-10-24 13:08:12,348 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-10-24 13:08:12,756 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-10-24 13:08:12,757 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-10-24 13:08:12,792 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:08:12,793 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render 2024-10-24 13:08:12,793 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-10-24 13:08:12,796 [ scc.git] DEBUG Check current status 2024-10-24 13:08:12,796 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-10-24 13:08:12,799 [ scc.git] DEBUG 173cac0 Bump version: 0.8.1 → 0.8.2.dev0 2024-10-24 13:08:12,799 [ scc.git] DEBUG Calling 'git submodule status' 2024-10-24 13:08:12,837 [ scc.config] DEBUG Found remote.origin.url 2024-10-24 13:08:13,310 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render HTTP/1.1" 200 None 2024-10-24 13:08:13,737 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-10-24 13:08:14,138 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-10-24 13:08:14,530 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-10-24 13:08:14,944 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-10-24 13:08:14,945 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-10-24 13:08:14,979 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:08:14,979 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr 2024-10-24 13:08:14,980 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-10-24 13:08:14,983 [ scc.git] DEBUG Check current status 2024-10-24 13:08:14,983 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-10-24 13:08:14,986 [ scc.git] DEBUG 9b73dd9 Merge pull request #161 from ome/pre-commit-ci-update-config 2024-10-24 13:08:14,986 [ scc.git] DEBUG Calling 'git submodule status' 2024-10-24 13:08:15,022 [ scc.config] DEBUG Found remote.origin.url 2024-10-24 13:08:15,415 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr HTTP/1.1" 200 None 2024-10-24 13:08:15,914 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-10-24 13:08:16,322 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-10-24 13:08:16,744 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-10-24 13:08:17,157 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-10-24 13:08:17,158 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-10-24 13:08:17,193 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:08:17,193 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure 2024-10-24 13:08:17,193 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-10-24 13:08:17,197 [ scc.git] DEBUG Check current status 2024-10-24 13:08:17,197 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-10-24 13:08:17,201 [ scc.git] DEBUG 24444fe6 Merge pull request #584 from Rdornier/link-url-to-image 2024-10-24 13:08:17,201 [ scc.git] DEBUG Calling 'git submodule status' 2024-10-24 13:08:17,239 [ scc.config] DEBUG Found remote.origin.url 2024-10-24 13:08:17,619 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure HTTP/1.1" 200 None 2024-10-24 13:08:18,064 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-10-24 13:08:18,465 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-10-24 13:08:18,896 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-10-24 13:08:19,356 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-10-24 13:08:19,357 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-10-24 13:08:19,390 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:08:19,391 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage 2024-10-24 13:08:19,391 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-10-24 13:08:19,395 [ scc.git] DEBUG Check current status 2024-10-24 13:08:19,395 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-10-24 13:08:19,398 [ scc.git] DEBUG e5b3ca3 Bump version: 0.4.1 → 0.4.2.dev0 2024-10-24 13:08:19,398 [ scc.git] DEBUG Calling 'git submodule status' 2024-10-24 13:08:19,435 [ scc.config] DEBUG Found remote.origin.url 2024-10-24 13:08:19,842 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage HTTP/1.1" 200 None 2024-10-24 13:08:20,283 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-10-24 13:08:20,730 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-10-24 13:08:21,136 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-10-24 13:08:21,529 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-10-24 13:08:21,530 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-10-24 13:08:21,564 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:08:21,565 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery 2024-10-24 13:08:21,565 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-10-24 13:08:21,568 [ scc.git] DEBUG Check current status 2024-10-24 13:08:21,568 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-10-24 13:08:21,572 [ scc.git] DEBUG 56f4435 Bump version: 3.4.3 → 3.4.4.dev0 2024-10-24 13:08:21,572 [ scc.git] DEBUG Calling 'git submodule status' 2024-10-24 13:08:21,608 [ scc.config] DEBUG Found remote.origin.url 2024-10-24 13:08:22,082 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery HTTP/1.1" 200 None 2024-10-24 13:08:22,553 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-10-24 13:08:22,972 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-10-24 13:08:23,381 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-10-24 13:08:23,792 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-10-24 13:08:23,793 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-10-24 13:08:23,826 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:08:23,827 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer 2024-10-24 13:08:23,827 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-10-24 13:08:23,830 [ scc.git] DEBUG Check current status 2024-10-24 13:08:23,831 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-10-24 13:08:23,834 [ scc.git] DEBUG a8f380f Merge pull request #476 from ome/dependabot/npm_and_yarn/braces-3.0.3 2024-10-24 13:08:23,834 [ scc.git] DEBUG Calling 'git submodule status' 2024-10-24 13:08:23,870 [ scc.config] DEBUG Found remote.origin.url 2024-10-24 13:08:24,277 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer HTTP/1.1" 200 None 2024-10-24 13:08:24,729 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-10-24 13:08:25,132 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-10-24 13:08:25,521 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-10-24 13:08:25,929 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-10-24 13:08:25,930 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-10-24 13:08:25,964 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:08:25,965 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr 2024-10-24 13:08:25,965 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-10-24 13:08:25,969 [ scc.git] DEBUG Check current status 2024-10-24 13:08:25,969 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-10-24 13:08:25,972 [ scc.git] DEBUG 9631b15 Merge pull request #82 from JensWendt/master 2024-10-24 13:08:25,972 [ scc.git] DEBUG Calling 'git submodule status' 2024-10-24 13:08:26,009 [ scc.config] DEBUG Found remote.origin.url 2024-10-24 13:08:26,395 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr HTTP/1.1" 200 None 2024-10-24 13:08:26,865 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-10-24 13:08:27,266 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-10-24 13:08:27,682 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-10-24 13:08:28,098 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-10-24 13:08:28,099 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-10-24 13:08:28,133 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:08:28,133 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata 2024-10-24 13:08:28,133 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-10-24 13:08:28,137 [ scc.git] DEBUG Check current status 2024-10-24 13:08:28,137 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-10-24 13:08:28,141 [ scc.git] DEBUG e2fc5ec Merge pull request #85 from sbesson/pytest_logging 2024-10-24 13:08:28,141 [ scc.git] DEBUG Calling 'git submodule status' 2024-10-24 13:08:28,177 [ scc.config] DEBUG Found remote.origin.url 2024-10-24 13:08:28,585 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata HTTP/1.1" 200 None 2024-10-24 13:08:29,027 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-10-24 13:08:29,436 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-10-24 13:08:29,838 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-10-24 13:08:30,247 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-10-24 13:08:30,248 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-10-24 13:08:30,281 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:08:30,282 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade 2024-10-24 13:08:30,282 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-10-24 13:08:30,285 [ scc.git] DEBUG Check current status 2024-10-24 13:08:30,285 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-10-24 13:08:30,289 [ scc.git] DEBUG 5d441c2 Bump version: 0.2.4 → 0.2.5.dev0 2024-10-24 13:08:30,289 [ scc.git] DEBUG Calling 'git submodule status' 2024-10-24 13:08:30,325 [ scc.config] DEBUG Found remote.origin.url 2024-10-24 13:08:30,715 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade HTTP/1.1" 200 None 2024-10-24 13:08:31,238 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-10-24 13:08:31,647 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-10-24 13:08:32,084 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-10-24 13:08:32,531 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-10-24 13:08:32,531 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-10-24 13:08:32,566 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:08:32,566 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools 2024-10-24 13:08:32,566 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-10-24 13:08:32,570 [ scc.git] DEBUG Check current status 2024-10-24 13:08:32,570 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-10-24 13:08:32,574 [ scc.git] DEBUG 18bccb6 Update actions to v3 and v4 2024-10-24 13:08:32,574 [ scc.git] DEBUG Calling 'git submodule status' 2024-10-24 13:08:32,610 [ scc.config] DEBUG Found remote.origin.url 2024-10-24 13:08:33,037 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools HTTP/1.1" 200 None 2024-10-24 13:08:33,479 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-10-24 13:08:33,875 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-10-24 13:08:34,269 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-10-24 13:08:34,668 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-10-24 13:08:34,669 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-10-24 13:08:34,704 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:08:34,705 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois 2024-10-24 13:08:34,705 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-10-24 13:08:34,709 [ scc.git] DEBUG Check current status 2024-10-24 13:08:34,709 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-10-24 13:08:34,712 [ scc.git] DEBUG 5c752d5 Merge pull request #27 from ome/pre-commit-ci-update-config 2024-10-24 13:08:34,713 [ scc.git] DEBUG Calling 'git submodule status' 2024-10-24 13:08:34,749 [ scc.config] DEBUG Found remote.origin.url 2024-10-24 13:08:35,151 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois HTTP/1.1" 200 None 2024-10-24 13:08:35,628 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-10-24 13:08:36,101 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-10-24 13:08:36,495 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-10-24 13:08:36,880 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-10-24 13:08:36,881 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-10-24 13:08:36,916 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:08:36,917 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup 2024-10-24 13:08:36,917 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-10-24 13:08:36,920 [ scc.git] DEBUG Check current status 2024-10-24 13:08:36,921 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-10-24 13:08:36,924 [ scc.git] DEBUG c8610db Bump version: 0.3.3 → 0.3.4.dev0 2024-10-24 13:08:36,925 [ scc.git] DEBUG Calling 'git submodule status' 2024-10-24 13:08:36,962 [ scc.config] DEBUG Found remote.origin.url 2024-10-24 13:08:37,368 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup HTTP/1.1" 200 None 2024-10-24 13:08:37,819 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-10-24 13:08:38,246 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-10-24 13:08:38,661 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-10-24 13:08:39,058 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-10-24 13:08:39,059 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-10-24 13:08:39,095 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:08:39,095 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra 2024-10-24 13:08:39,095 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-10-24 13:08:39,099 [ scc.git] DEBUG Check current status 2024-10-24 13:08:39,100 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-10-24 13:08:39,104 [ scc.git] DEBUG cda3ec6 Merge pull request #70 from jburel/toml_support 2024-10-24 13:08:39,104 [ scc.git] DEBUG Calling 'git submodule status' 2024-10-24 13:08:39,142 [ scc.config] DEBUG Found remote.origin.url 2024-10-24 13:08:39,477 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-test-infra HTTP/1.1" 301 198 Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 2024-10-24 13:08:39,479 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 2024-10-24 13:08:39,679 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/111908919 HTTP/1.1" 200 None 2024-10-24 13:08:40,113 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-10-24 13:08:40,515 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-10-24 13:08:40,985 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-10-24 13:08:41,390 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-10-24 13:08:41,391 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-10-24 13:08:41,426 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:08:41,428 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload 2024-10-24 13:08:41,428 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-10-24 13:08:41,432 [ scc.git] DEBUG Check current status 2024-10-24 13:08:41,432 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-10-24 13:08:41,436 [ scc.git] DEBUG aca9e9c Merge pull request #12 from sbesson/pytest 2024-10-24 13:08:41,436 [ scc.git] DEBUG Calling 'git submodule status' 2024-10-24 13:08:41,474 [ scc.config] DEBUG Found remote.origin.url 2024-10-24 13:08:41,867 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload HTTP/1.1" 200 None 2024-10-24 13:08:42,317 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-10-24 13:08:42,717 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-10-24 13:08:43,118 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-10-24 13:08:43,560 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-10-24 13:08:43,561 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-10-24 13:08:43,598 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:08:43,598 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope 2024-10-24 13:08:43,598 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-10-24 13:08:43,603 [ scc.git] DEBUG Check current status 2024-10-24 13:08:43,603 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-10-24 13:08:43,607 [ scc.git] DEBUG deab817 update setup-python to v4 2024-10-24 13:08:43,607 [ scc.git] DEBUG Calling 'git submodule status' 2024-10-24 13:08:43,645 [ scc.config] DEBUG Found remote.origin.url 2024-10-24 13:08:44,020 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope HTTP/1.1" 200 None 2024-10-24 13:08:44,455 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-10-24 13:08:44,872 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-10-24 13:08:45,353 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-10-24 13:08:45,752 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-10-24 13:08:45,753 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-10-24 13:08:45,789 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:08:45,790 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr 2024-10-24 13:08:45,790 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-10-24 13:08:45,794 [ scc.git] DEBUG Check current status 2024-10-24 13:08:45,794 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-10-24 13:08:45,798 [ scc.git] DEBUG 67bb245 Bump version: 0.1.1 → 0.1.2.dev0 2024-10-24 13:08:45,798 [ scc.git] DEBUG Calling 'git submodule status' 2024-10-24 13:08:45,836 [ scc.config] DEBUG Found remote.origin.url 2024-10-24 13:08:45,837 [ scc.git] DEBUG Repository configuration: base-branch: main 2024-10-24 13:08:46,226 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr HTTP/1.1" 200 None 2024-10-24 13:08:46,661 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-10-24 13:08:47,067 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-10-24 13:08:47,463 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-10-24 13:08:47,871 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-10-24 13:08:47,872 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-10-24 13:08:47,908 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:08:47,909 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror 2024-10-24 13:08:47,909 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-10-24 13:08:47,913 [ scc.git] DEBUG Check current status 2024-10-24 13:08:47,913 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-10-24 13:08:47,918 [ scc.git] DEBUG adfa132 Bump version: 0.4.1 → 0.4.2.dev0 2024-10-24 13:08:47,918 [ scc.git] DEBUG Calling 'git submodule status' 2024-10-24 13:08:47,956 [ scc.config] DEBUG Found remote.origin.url 2024-10-24 13:08:48,278 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-weberror HTTP/1.1" 301 197 Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 2024-10-24 13:08:48,279 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 2024-10-24 13:08:48,542 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/38373425 HTTP/1.1" 200 None 2024-10-24 13:08:49,013 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-10-24 13:08:49,416 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-10-24 13:08:49,817 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-10-24 13:08:50,226 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-10-24 13:08:50,226 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-10-24 13:08:50,263 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:08:50,264 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest 2024-10-24 13:08:50,264 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-10-24 13:08:50,268 [ scc.git] DEBUG Check current status 2024-10-24 13:08:50,268 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-10-24 13:08:50,273 [ scc.git] DEBUG 8da48e1 Bump version: 0.4.2 → 0.4.3.dev0 2024-10-24 13:08:50,273 [ scc.git] DEBUG Calling 'git submodule status' 2024-10-24 13:08:50,312 [ scc.config] DEBUG Found remote.origin.url 2024-10-24 13:08:50,626 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-webtest HTTP/1.1" 301 197 Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 2024-10-24 13:08:50,627 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 2024-10-24 13:08:50,854 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/25970383 HTTP/1.1" 200 None 2024-10-24 13:08:51,340 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-10-24 13:08:51,754 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-10-24 13:08:52,154 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-10-24 13:08:52,592 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-10-24 13:08:52,593 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-10-24 13:08:52,629 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:08:52,630 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway 2024-10-24 13:08:52,630 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-10-24 13:08:52,634 [ scc.git] DEBUG Check current status 2024-10-24 13:08:52,634 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-10-24 13:08:52,639 [ scc.git] DEBUG 7b5d64d Merge pull request #106 from dominikl/add_examples_2 2024-10-24 13:08:52,639 [ scc.git] DEBUG Calling 'git submodule status' 2024-10-24 13:08:52,678 [ scc.config] DEBUG Found remote.origin.url 2024-10-24 13:08:53,061 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway HTTP/1.1" 200 None 2024-10-24 13:08:53,495 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-10-24 13:08:53,934 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-10-24 13:08:54,329 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-10-24 13:08:54,726 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-10-24 13:08:54,727 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-10-24 13:08:54,763 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:08:54,764 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts 2024-10-24 13:08:54,764 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-10-24 13:08:54,769 [ scc.git] DEBUG Check current status 2024-10-24 13:08:54,769 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-10-24 13:08:54,831 [ scc.git] DEBUG 312afbe Bump version: 5.8.3 → 5.8.4.dev0 2024-10-24 13:08:54,831 [ scc.git] DEBUG Calling 'git submodule status' 2024-10-24 13:08:54,869 [ scc.config] DEBUG Found remote.origin.url 2024-10-24 13:08:54,870 [ scc.git] DEBUG Repository configuration: base-branch: develop 2024-10-24 13:08:55,129 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/scripts HTTP/1.1" 301 196 Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2024-10-24 13:08:55,130 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2024-10-24 13:08:55,368 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/4865545 HTTP/1.1" 200 None 2024-10-24 13:08:55,801 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-10-24 13:08:56,220 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-10-24 13:08:56,651 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-10-24 13:08:57,055 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-10-24 13:08:57,056 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-10-24 13:08:57,093 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:08:57,093 [ scc.git] DEBUG Resetting... 2024-10-24 13:08:57,093 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2024-10-24 13:08:57,102 [ scc.git] DEBUG HEAD is now at 1066161 merge master -Dorg -Snone 2024-10-24 13:08:57,102 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2024-10-24 13:08:57,193 [ scc.git] DEBUG Check current status 2024-10-24 13:08:57,193 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-10-24 13:08:57,197 [ scc.git] DEBUG 1066161 merge master -Dorg -Snone 2024-10-24 13:08:57,197 [ scc.git] DEBUG Calling 'git submodule status' 2024-10-24 13:08:57,239 [ scc.git] DEBUG 4628e82a32d8af458d9fa621303b24a0a860378f minimal-omero-client (remotes/origin/HEAD) 2024-10-24 13:08:57,242 [ scc.git] DEBUG 027b3e695d5b225955918c53ef8c81e0d5bc6bf4 omero-cli-duplicate (v0.4.0-12-g027b3e6) 2024-10-24 13:08:57,244 [ scc.git] DEBUG 173cac06778e91d3a13b6084c62d95108290cb9f omero-cli-render (v0.8.1-1-g173cac0) 2024-10-24 13:08:57,247 [ scc.git] DEBUG 9b73dd9dbdeb36dbdb675b02661d253052fca0f0 omero-cli-zarr (v0.5.5-7-g9b73dd9) 2024-10-24 13:08:57,257 [ scc.git] DEBUG 24444fe6bf35af27230c28e466f9819b08853118 omero-figure (v7.1.0-90-g24444fe6) 2024-10-24 13:08:57,259 [ scc.git] DEBUG e5b3ca3a5aba41c950d2427b1a05ee0ced55670e omero-fpbioimage (v0.4.1-1-ge5b3ca3) 2024-10-24 13:08:57,262 [ scc.git] DEBUG 56f443528edd3b7127635933cb573b528b57acda omero-gallery (v3.4.3-1-g56f4435) 2024-10-24 13:08:57,265 [ scc.git] DEBUG a8f380fabfd839b946e5a5f613f1fce07abb3815 omero-iviewer (v0.14.0-3-ga8f380f) 2024-10-24 13:08:57,267 [ scc.git] DEBUG 9631b155c44fcec9986b03315dd9f5c5c64aa7eb omero-mapr (v0.5.2-7-g9631b15) 2024-10-24 13:08:57,270 [ scc.git] DEBUG e2fc5ec5aeb38953ac2a12cb7c980aeee5bf306c omero-metadata (v0.12.0-15-ge2fc5ec) 2024-10-24 13:08:57,272 [ scc.git] DEBUG 5d441c250912a98d8a87771f78dde8b54c8e12d6 omero-parade (v0.2.4-1-g5d441c2) 2024-10-24 13:08:57,275 [ scc.git] DEBUG 18bccb69f16cfeee98628ff2ae14ab829b87a23c omero-prometheus-tools (v0.2.3-4-g18bccb6) 2024-10-24 13:08:57,278 [ scc.git] DEBUG 5c752d5c25fee07c1835036d6a90bd97faeb0720 omero-rois (v0.2.0-63-g5c752d5) 2024-10-24 13:08:57,280 [ scc.git] DEBUG c8610dba25f39870a09fa5401c735fb3be85a319 omero-signup (v0.3.3-1-gc8610db) 2024-10-24 13:08:57,283 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6) 2024-10-24 13:08:57,286 [ scc.git] DEBUG aca9e9cad82a08e2e3d37d71cb374b37c90e4693 omero-upload (v0.4.0-8-gaca9e9c) 2024-10-24 13:08:57,288 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2024-10-24 13:08:57,290 [ scc.git] DEBUG 67bb245b8b08709e04a8bf52b02de2298a029a94 omero-web-zarr (v0.1.1-1-g67bb245) 2024-10-24 13:08:57,292 [ scc.git] DEBUG adfa132f23a1b12ca2d2ec53ebba54c760fe2d07 omero-weberror (v0.4.1-1-gadfa132) 2024-10-24 13:08:57,295 [ scc.git] DEBUG 8da48e116184f1ebb28aa9629748afdfb0282ae5 omero-webtest (v0.4.2-1-g8da48e1) 2024-10-24 13:08:57,297 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2024-10-24 13:08:57,301 [ scc.git] DEBUG 312afbed633613e1f728a1fe9eaac096e54318e0 scripts (v5.8.3-1-g312afbe) 2024-10-24 13:08:57,301 [ scc.merge] INFO Merging Pull Request(s) based on master 2024-10-24 13:08:57,301 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2024-10-24 13:08:57,302 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2024-10-24 13:08:57,302 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2024-10-24 13:08:57,302 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2024-10-24 13:08:57,302 [ scc.merge] INFO Excluding Pull Request(s) without successful status 2024-10-24 13:08:57,302 [ scc.repo] DEBUG ## PRs found: 2024-10-24 13:08:57,488 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/pulls HTTP/1.1" 200 2 2024-10-24 13:08:57,489 [ scc.repo] DEBUG ## Branches found: 2024-10-24 13:08:57,489 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:08:57,489 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:08:57,493 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-10-24 13:08:57,498 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-10-24 13:08:57,498 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-10-24 13:08:57,502 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-10-24 13:08:57,507 [ scc.git] DEBUG Already up to date. 2024-10-24 13:08:57,507 [ scc.git] DEBUG ## Unique users: [] 2024-10-24 13:08:57,507 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:08:57,507 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:08:57,511 [ scc.git] DEBUG Calling 'git submodule update' 2024-10-24 13:08:57,558 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:08:57,558 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:08:57,562 [ scc.repo] DEBUG ## PRs found: 2024-10-24 13:08:57,982 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/minimal-omero-client/pulls HTTP/1.1" 200 None 2024-10-24 13:08:58,438 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/minimal-omero-client/issues/66 HTTP/1.1" 200 None 2024-10-24 13:08:59,027 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/minimal-omero-client/commits/6a9ec1416390843e1243e924ff9d05acf2966875 HTTP/1.1" 200 None 2024-10-24 13:08:59,509 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/minimal-omero-client/commits/6a9ec1416390843e1243e924ff9d05acf2966875/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-10-24 13:08:59,970 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/minimal-omero-client/commits/6a9ec1416390843e1243e924ff9d05acf2966875/check-suites?app_id=15368 HTTP/1.1" 200 None 2024-10-24 13:09:00,901 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/minimal-omero-client/commits/6a9ec1416390843e1243e924ff9d05acf2966875 HTTP/1.1" 200 None 2024-10-24 13:09:01,299 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/minimal-omero-client/statuses/6a9ec1416390843e1243e924ff9d05acf2966875?per_page=1 HTTP/1.1" 200 2 2024-10-24 13:09:01,300 [ scc.repo] DEBUG - PR 66 jburel 'Gateway 5 9 2' 2024-10-24 13:09:01,300 [ scc.repo] DEBUG ## Branches found: 2024-10-24 13:09:01,300 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client 2024-10-24 13:09:01,300 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:09:01,300 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:09:01,306 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-10-24 13:09:01,310 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-10-24 13:09:01,310 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-10-24 13:09:01,315 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-10-24 13:09:01,320 [ scc.git] DEBUG Already up to date. 2024-10-24 13:09:01,320 [ scc.git] DEBUG Calling 'git fetch origin pull/66/head' 2024-10-24 13:09:01,912 [ scc.git] DEBUG From https://github.com/ome/minimal-omero-client 2024-10-24 13:09:01,912 [ scc.git] DEBUG * branch refs/pull/66/head -> FETCH_HEAD 2024-10-24 13:09:01,915 [ scc.git] DEBUG ## Unique users: [] 2024-10-24 13:09:01,916 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:09:01,916 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:09:01,920 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6a9ec1416390843e1243e924ff9d05acf2966875' 2024-10-24 13:09:01,926 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:09:01,930 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 66 (Gateway 5 9 2) 6a9ec1416390843e1243e924ff9d05acf2966875' 2024-10-24 13:09:02,038 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-10-24 13:09:02,040 [ scc.git] DEBUG .github/workflows/maven.yml | 4 ++-- 2024-10-24 13:09:02,040 [ scc.git] DEBUG build.gradle | 4 ++-- 2024-10-24 13:09:02,040 [ scc.git] DEBUG pom.xml | 4 ++-- 2024-10-24 13:09:02,040 [ scc.git] DEBUG 3 files changed, 6 insertions(+), 6 deletions(-) 2024-10-24 13:09:02,173 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:09:02,174 [ scc.git] DEBUG Calling 'git submodule update' 2024-10-24 13:09:02,210 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:09:02,210 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:09:02,214 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-10-24 13:09:02,248 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-10-24 13:09:02,254 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7b8f09e400> has no local changes 2024-10-24 13:09:02,254 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/minimal-omero-client Already up to date. Merged PRs: - PR 66 jburel 'Gateway 5 9 2' Generated by OMERO-plugins-push#222 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/222/)' 2024-10-24 13:09:02,261 [ scc.git] DEBUG [detached HEAD bed4841] merge master -Dorg -Ssuccess-only 2024-10-24 13:09:02,261 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:09:02,262 [ scc.repo] DEBUG ## PRs found: 2024-10-24 13:09:02,696 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/pulls HTTP/1.1" 200 None 2024-10-24 13:09:03,162 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/25 HTTP/1.1" 200 None 2024-10-24 13:09:03,612 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/25/comments HTTP/1.1" 200 None 2024-10-24 13:09:04,226 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ba066707734718b3c2f034d21873d2fcecd9cd48 HTTP/1.1" 200 None 2024-10-24 13:09:04,743 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ba066707734718b3c2f034d21873d2fcecd9cd48/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-10-24 13:09:05,180 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ba066707734718b3c2f034d21873d2fcecd9cd48/check-suites?app_id=15368 HTTP/1.1" 200 None 2024-10-24 13:09:05,706 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ba066707734718b3c2f034d21873d2fcecd9cd48 HTTP/1.1" 200 None 2024-10-24 13:09:06,109 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/statuses/ba066707734718b3c2f034d21873d2fcecd9cd48?per_page=1 HTTP/1.1" 200 2 2024-10-24 13:09:06,109 [ scc.repo] DEBUG - PR 25 jburel 'review message' 2024-10-24 13:09:06,570 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/18 HTTP/1.1" 200 None 2024-10-24 13:09:07,044 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/18/comments HTTP/1.1" 200 None 2024-10-24 13:09:07,045 [ scc.repo] DEBUG ## Branches found: 2024-10-24 13:09:07,045 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate 2024-10-24 13:09:07,045 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:09:07,045 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:09:07,051 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-10-24 13:09:07,055 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-10-24 13:09:07,055 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-10-24 13:09:07,060 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-10-24 13:09:07,065 [ scc.git] DEBUG Already up to date. 2024-10-24 13:09:07,065 [ scc.git] DEBUG Calling 'git fetch origin pull/25/head' 2024-10-24 13:09:07,378 [ scc.git] DEBUG From https://github.com/ome/omero-cli-duplicate 2024-10-24 13:09:07,378 [ scc.git] DEBUG * branch refs/pull/25/head -> FETCH_HEAD 2024-10-24 13:09:07,381 [ scc.git] DEBUG ## Unique users: [] 2024-10-24 13:09:07,382 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:09:07,382 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:09:07,386 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...ba066707734718b3c2f034d21873d2fcecd9cd48' 2024-10-24 13:09:07,391 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:09:07,395 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (review message) ba066707734718b3c2f034d21873d2fcecd9cd48' 2024-10-24 13:09:07,404 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-10-24 13:09:07,406 [ scc.git] DEBUG src/omero/plugins/duplicate.py | 7 +++---- 2024-10-24 13:09:07,406 [ scc.git] DEBUG 1 file changed, 3 insertions(+), 4 deletions(-) 2024-10-24 13:09:07,551 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:09:07,552 [ scc.git] DEBUG Calling 'git submodule update' 2024-10-24 13:09:07,588 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:09:07,588 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:09:07,593 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-10-24 13:09:07,627 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-10-24 13:09:07,633 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7b8f09e8e0> has no local changes 2024-10-24 13:09:07,633 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-cli-duplicate Excluded PRs: - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment) Already up to date. Merged PRs: - PR 25 jburel 'review message' Generated by OMERO-plugins-push#222 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/222/)' 2024-10-24 13:09:07,640 [ scc.git] DEBUG [detached HEAD 4c6ca0d] merge master -Dorg -Ssuccess-only 2024-10-24 13:09:07,641 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:09:07,641 [ scc.repo] DEBUG ## PRs found: 2024-10-24 13:09:08,091 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls HTTP/1.1" 200 None 2024-10-24 13:09:08,555 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/62 HTTP/1.1" 200 None 2024-10-24 13:09:09,033 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/62/comments HTTP/1.1" 200 None 2024-10-24 13:09:09,500 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/59 HTTP/1.1" 200 None 2024-10-24 13:09:09,991 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/59/comments HTTP/1.1" 200 None 2024-10-24 13:09:10,545 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/b8fba620a2b882050c1858f3a7d8bee8c8efdede HTTP/1.1" 200 None 2024-10-24 13:09:11,021 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/b8fba620a2b882050c1858f3a7d8bee8c8efdede/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-10-24 13:09:11,542 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/b8fba620a2b882050c1858f3a7d8bee8c8efdede HTTP/1.1" 200 None 2024-10-24 13:09:11,939 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/statuses/b8fba620a2b882050c1858f3a7d8bee8c8efdede?per_page=1 HTTP/1.1" 200 2 2024-10-24 13:09:11,939 [ scc.repo] DEBUG - PR 59 will-moore 'Apply settings to Plate' 2024-10-24 13:09:12,385 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/54 HTTP/1.1" 200 None 2024-10-24 13:09:12,862 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/52 HTTP/1.1" 200 None 2024-10-24 13:09:13,338 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/52/comments HTTP/1.1" 200 None 2024-10-24 13:09:13,781 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/48 HTTP/1.1" 200 None 2024-10-24 13:09:14,231 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/48/comments HTTP/1.1" 200 None 2024-10-24 13:09:14,232 [ scc.repo] DEBUG ## Branches found: 2024-10-24 13:09:14,232 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render 2024-10-24 13:09:14,232 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:09:14,232 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:09:14,238 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-10-24 13:09:14,243 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-10-24 13:09:14,243 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-10-24 13:09:14,247 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-10-24 13:09:14,252 [ scc.git] DEBUG Already up to date. 2024-10-24 13:09:14,253 [ scc.git] DEBUG Calling 'git fetch origin pull/59/head' 2024-10-24 13:09:14,641 [ scc.git] DEBUG From https://github.com/ome/omero-cli-render 2024-10-24 13:09:14,642 [ scc.git] DEBUG * branch refs/pull/59/head -> FETCH_HEAD 2024-10-24 13:09:14,645 [ scc.git] DEBUG ## Unique users: [] 2024-10-24 13:09:14,645 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:09:14,645 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:09:14,650 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b8fba620a2b882050c1858f3a7d8bee8c8efdede' 2024-10-24 13:09:14,655 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:09:14,659 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 59 (Apply settings to Plate) b8fba620a2b882050c1858f3a7d8bee8c8efdede' 2024-10-24 13:09:14,727 [ scc.git] DEBUG Auto-merging src/omero_cli_render.py 2024-10-24 13:09:14,728 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-10-24 13:09:14,730 [ scc.git] DEBUG src/omero_cli_render.py | 49 ++++++++++++++++++++++++++++++++----------------- 2024-10-24 13:09:14,730 [ scc.git] DEBUG 1 file changed, 32 insertions(+), 17 deletions(-) 2024-10-24 13:09:14,874 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:09:14,875 [ scc.git] DEBUG Calling 'git submodule update' 2024-10-24 13:09:14,910 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:09:14,910 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:09:14,915 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-10-24 13:09:14,950 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-10-24 13:09:14,955 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7b8e04eca0> has no local changes 2024-10-24 13:09:14,956 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-cli-render Excluded PRs: - PR 62 dominikl 'Add export and impo(rt) commands' (stage: draft) - PR 54 dominikl 'Change rendering settings spec' (stage: draft) - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft) - PR 48 dominikl 'Don't start rendering engine to get settings' (stage: draft) Already up to date. Merged PRs: - PR 59 will-moore 'Apply settings to Plate' Generated by OMERO-plugins-push#222 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/222/)' 2024-10-24 13:09:14,963 [ scc.git] DEBUG [detached HEAD 43eeee4] merge master -Dorg -Ssuccess-only 2024-10-24 13:09:14,964 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:09:14,964 [ scc.repo] DEBUG ## PRs found: 2024-10-24 13:09:15,485 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls HTTP/1.1" 200 None 2024-10-24 13:09:15,946 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/162 HTTP/1.1" 200 None 2024-10-24 13:09:16,387 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/147 HTTP/1.1" 200 None 2024-10-24 13:09:16,842 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/147/comments HTTP/1.1" 200 None 2024-10-24 13:09:17,382 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/a14f62a940f4974a305b3f5858049ee493b898ef HTTP/1.1" 200 None 2024-10-24 13:09:17,859 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/a14f62a940f4974a305b3f5858049ee493b898ef/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-10-24 13:09:18,296 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/a14f62a940f4974a305b3f5858049ee493b898ef/check-suites?app_id=15368 HTTP/1.1" 200 None 2024-10-24 13:09:18,732 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/a14f62a940f4974a305b3f5858049ee493b898ef HTTP/1.1" 200 None 2024-10-24 13:09:19,141 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/a14f62a940f4974a305b3f5858049ee493b898ef?per_page=1 HTTP/1.1" 200 None 2024-10-24 13:09:19,562 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/a14f62a940f4974a305b3f5858049ee493b898ef HTTP/1.1" 200 None 2024-10-24 13:09:19,987 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/a14f62a940f4974a305b3f5858049ee493b898ef/status HTTP/1.1" 200 None 2024-10-24 13:09:19,988 [ scc.repo] DEBUG - PR 147 will-moore 'Name option' 2024-10-24 13:09:20,453 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/123 HTTP/1.1" 200 None 2024-10-24 13:09:20,990 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/123/comments HTTP/1.1" 200 None 2024-10-24 13:09:21,446 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/256245946/issues/123/comments?page=2 HTTP/1.1" 200 None 2024-10-24 13:09:21,960 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/553b35f498764274f8dc882fb54c7e0a30fb6737 HTTP/1.1" 200 None 2024-10-24 13:09:22,431 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/553b35f498764274f8dc882fb54c7e0a30fb6737/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-10-24 13:09:22,923 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/553b35f498764274f8dc882fb54c7e0a30fb6737 HTTP/1.1" 200 None 2024-10-24 13:09:23,331 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/553b35f498764274f8dc882fb54c7e0a30fb6737?per_page=1 HTTP/1.1" 200 2 2024-10-24 13:09:23,331 [ scc.repo] DEBUG - PR 123 will-moore 'Support export of Fileset:ID' 2024-10-24 13:09:23,794 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/102 HTTP/1.1" 200 None 2024-10-24 13:09:24,288 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/102/comments HTTP/1.1" 200 None 2024-10-24 13:09:24,839 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f22d4074b7c458ad24320cf5a6f8adb9e686aa44 HTTP/1.1" 200 None 2024-10-24 13:09:25,303 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f22d4074b7c458ad24320cf5a6f8adb9e686aa44/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-10-24 13:09:25,816 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f22d4074b7c458ad24320cf5a6f8adb9e686aa44 HTTP/1.1" 200 None 2024-10-24 13:09:26,271 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/f22d4074b7c458ad24320cf5a6f8adb9e686aa44?per_page=1 HTTP/1.1" 200 2 2024-10-24 13:09:26,271 [ scc.repo] DEBUG - PR 102 will-moore 'Zarr export tests' 2024-10-24 13:09:26,271 [ scc.repo] DEBUG ## Branches found: 2024-10-24 13:09:26,271 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr 2024-10-24 13:09:26,272 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:09:26,272 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:09:26,277 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-10-24 13:09:26,282 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-10-24 13:09:26,282 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-10-24 13:09:26,287 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-10-24 13:09:26,292 [ scc.git] DEBUG Already up to date. 2024-10-24 13:09:26,292 [ scc.git] DEBUG Calling 'git fetch origin pull/102/head' 2024-10-24 13:09:26,604 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr 2024-10-24 13:09:26,604 [ scc.git] DEBUG * branch refs/pull/102/head -> FETCH_HEAD 2024-10-24 13:09:26,608 [ scc.git] DEBUG Calling 'git fetch origin pull/123/head' 2024-10-24 13:09:26,926 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr 2024-10-24 13:09:26,926 [ scc.git] DEBUG * branch refs/pull/123/head -> FETCH_HEAD 2024-10-24 13:09:26,930 [ scc.git] DEBUG Calling 'git fetch origin pull/147/head' 2024-10-24 13:09:27,227 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr 2024-10-24 13:09:27,227 [ scc.git] DEBUG * branch refs/pull/147/head -> FETCH_HEAD 2024-10-24 13:09:27,231 [ scc.git] DEBUG ## Unique users: [] 2024-10-24 13:09:27,231 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:09:27,231 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:09:27,236 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...f22d4074b7c458ad24320cf5a6f8adb9e686aa44' 2024-10-24 13:09:27,242 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:09:27,247 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 102 (Zarr export tests) f22d4074b7c458ad24320cf5a6f8adb9e686aa44' 2024-10-24 13:09:27,258 [ scc.git] DEBUG Auto-merging src/omero_zarr/cli.py 2024-10-24 13:09:27,258 [ scc.git] DEBUG Auto-merging src/omero_zarr/raw_pixels.py 2024-10-24 13:09:27,258 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/raw_pixels.py 2024-10-24 13:09:27,258 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2024-10-24 13:09:27,258 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2024-10-24 13:09:27,263 [ scc.git] DEBUG Calling 'git reset --hard 9b73dd9dbdeb36dbdb675b02661d253052fca0f0' 2024-10-24 13:09:27,269 [ scc.git] DEBUG HEAD is now at 9b73dd9 Merge pull request #161 from ome/pre-commit-ci-update-config 2024-10-24 13:09:27,400 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:09:27,401 [ scc.git] DEBUG Calling 'git merge-base 9b73dd9dbdeb36dbdb675b02661d253052fca0f0 f22d4074b7c458ad24320cf5a6f8adb9e686aa44' 2024-10-24 13:09:27,407 [ scc.git] DEBUG Calling 'git diff --name-only 782a1cd0077bcc2871f21e9f0acdc25ae7745243..9b73dd9dbdeb36dbdb675b02661d253052fca0f0' 2024-10-24 13:09:27,412 [ scc.git] INFO - PR 102 will-moore 'Zarr export tests' Conflicting PR. Removed from build [OMERO-plugins-push#222](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/222/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/222/consoleText) for more details. Possible conflicts: - Upstream changes - src/omero_zarr/raw_pixels.py --conflicts 2024-10-24 13:09:27,416 [ scc.config] DEBUG Found github.token 2024-10-24 13:09:27,416 [ scc.git] DEBUG Not adding comment to issue #102, already --conflicts. 2024-10-24 13:09:27,416 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...553b35f498764274f8dc882fb54c7e0a30fb6737' 2024-10-24 13:09:27,422 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:09:27,426 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 123 (Support export of Fileset:ID) 553b35f498764274f8dc882fb54c7e0a30fb6737' 2024-10-24 13:09:27,437 [ scc.git] DEBUG Auto-merging .isort.cfg 2024-10-24 13:09:27,437 [ scc.git] DEBUG CONFLICT (content): Merge conflict in .isort.cfg 2024-10-24 13:09:27,437 [ scc.git] DEBUG Auto-merging setup.py 2024-10-24 13:09:27,437 [ scc.git] DEBUG Auto-merging src/omero_zarr/cli.py 2024-10-24 13:09:27,437 [ scc.git] DEBUG Auto-merging src/omero_zarr/raw_pixels.py 2024-10-24 13:09:27,437 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/raw_pixels.py 2024-10-24 13:09:27,437 [ scc.git] DEBUG Auto-merging src/omero_zarr/util.py 2024-10-24 13:09:27,437 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2024-10-24 13:09:27,437 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2024-10-24 13:09:27,442 [ scc.git] DEBUG Calling 'git reset --hard 9b73dd9dbdeb36dbdb675b02661d253052fca0f0' 2024-10-24 13:09:27,448 [ scc.git] DEBUG HEAD is now at 9b73dd9 Merge pull request #161 from ome/pre-commit-ci-update-config 2024-10-24 13:09:27,783 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:09:27,784 [ scc.git] DEBUG Calling 'git merge-base 9b73dd9dbdeb36dbdb675b02661d253052fca0f0 553b35f498764274f8dc882fb54c7e0a30fb6737' 2024-10-24 13:09:27,790 [ scc.git] DEBUG Calling 'git diff --name-only eff38d0408f9d50de13b28dfe09e4382965e203f..9b73dd9dbdeb36dbdb675b02661d253052fca0f0' 2024-10-24 13:09:27,795 [ scc.git] INFO - PR 123 will-moore 'Support export of Fileset:ID' Conflicting PR. Removed from build [OMERO-plugins-push#222](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/222/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/222/consoleText) for more details. Possible conflicts: - PR #102 will-moore 'Zarr export tests' - src/omero_zarr/raw_pixels.py - Upstream changes - .isort.cfg - src/omero_zarr/raw_pixels.py --conflicts 2024-10-24 13:09:27,799 [ scc.config] DEBUG Found github.token 2024-10-24 13:09:27,799 [ scc.git] DEBUG Not adding comment to issue #123, already --conflicts. 2024-10-24 13:09:27,799 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...a14f62a940f4974a305b3f5858049ee493b898ef' 2024-10-24 13:09:27,805 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:09:27,809 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 147 (Name option) a14f62a940f4974a305b3f5858049ee493b898ef' 2024-10-24 13:09:28,004 [ scc.git] DEBUG Auto-merging src/omero_zarr/masks.py 2024-10-24 13:09:28,004 [ scc.git] DEBUG Auto-merging src/omero_zarr/raw_pixels.py 2024-10-24 13:09:28,004 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-10-24 13:09:28,007 [ scc.git] DEBUG README.rst | 30 ++++++++++++++++++------------ 2024-10-24 13:09:28,007 [ scc.git] DEBUG src/omero_zarr/cli.py | 9 +++++++++ 2024-10-24 13:09:28,007 [ scc.git] DEBUG src/omero_zarr/masks.py | 4 ++-- 2024-10-24 13:09:28,007 [ scc.git] DEBUG src/omero_zarr/raw_pixels.py | 28 +++++++++++++++++++++++----- 2024-10-24 13:09:28,007 [ scc.git] DEBUG src/omero_zarr/util.py | 2 +- 2024-10-24 13:09:28,007 [ scc.git] DEBUG 5 files changed, 53 insertions(+), 20 deletions(-) 2024-10-24 13:09:28,187 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:09:28,188 [ scc.git] DEBUG Calling 'git submodule update' 2024-10-24 13:09:28,224 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:09:28,225 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:09:28,229 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-10-24 13:09:28,264 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-10-24 13:09:28,269 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7b8e047df0> has no local changes 2024-10-24 13:09:28,270 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-cli-zarr Excluded PRs: - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) Already up to date. Merged PRs: - PR 147 will-moore 'Name option' Conflicting PRs (not included): - PR 102 will-moore 'Zarr export tests' - PR 123 will-moore 'Support export of Fileset:ID' Generated by OMERO-plugins-push#222 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/222/)' 2024-10-24 13:09:28,277 [ scc.git] DEBUG [detached HEAD e9bacf7] merge master -Dorg -Ssuccess-only 2024-10-24 13:09:28,277 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:09:28,278 [ scc.repo] DEBUG ## PRs found: 2024-10-24 13:09:28,746 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls HTTP/1.1" 200 None 2024-10-24 13:09:29,216 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/599 HTTP/1.1" 200 None 2024-10-24 13:09:29,729 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/599/comments HTTP/1.1" 200 None 2024-10-24 13:09:29,730 [ scc.repo] DEBUG # ... Include label: include 2024-10-24 13:09:30,197 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/f42e17d64b673b0b34c93dec1b67d60b92445964 HTTP/1.1" 200 None 2024-10-24 13:09:30,663 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/f42e17d64b673b0b34c93dec1b67d60b92445964/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-10-24 13:09:31,107 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/f42e17d64b673b0b34c93dec1b67d60b92445964/check-suites?app_id=15368 HTTP/1.1" 200 None 2024-10-24 13:09:31,521 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/f42e17d64b673b0b34c93dec1b67d60b92445964 HTTP/1.1" 200 None 2024-10-24 13:09:31,914 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/f42e17d64b673b0b34c93dec1b67d60b92445964?per_page=1 HTTP/1.1" 200 2 2024-10-24 13:09:31,915 [ scc.repo] DEBUG - PR 599 Tom-TBT 'Patch label text selection and cue for dragging' 2024-10-24 13:09:32,359 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/598 HTTP/1.1" 200 None 2024-10-24 13:09:32,360 [ scc.repo] DEBUG # ... Include label: include 2024-10-24 13:09:32,870 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/3c170054f782fb9ac230c740c32dceac9e50c618 HTTP/1.1" 200 None 2024-10-24 13:09:33,372 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/3c170054f782fb9ac230c740c32dceac9e50c618/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-10-24 13:09:33,903 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/3c170054f782fb9ac230c740c32dceac9e50c618/check-suites?app_id=15368 HTTP/1.1" 200 None 2024-10-24 13:09:34,435 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/3c170054f782fb9ac230c740c32dceac9e50c618 HTTP/1.1" 200 None 2024-10-24 13:09:34,829 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/3c170054f782fb9ac230c740c32dceac9e50c618?per_page=1 HTTP/1.1" 200 2 2024-10-24 13:09:34,830 [ scc.repo] DEBUG - PR 598 Tom-TBT 'Query timestamps from all planes when C or Z dimensions are not filled' 2024-10-24 13:09:35,304 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/597 HTTP/1.1" 200 None 2024-10-24 13:09:35,730 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/596 HTTP/1.1" 200 None 2024-10-24 13:09:36,229 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/595 HTTP/1.1" 200 None 2024-10-24 13:09:36,724 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/595/comments HTTP/1.1" 200 None 2024-10-24 13:09:36,725 [ scc.repo] DEBUG # ... Include label: include 2024-10-24 13:09:37,347 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/d7154f54e7f48bbfa0bd61ed568b26b9aa2f88ce HTTP/1.1" 200 None 2024-10-24 13:09:37,813 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/d7154f54e7f48bbfa0bd61ed568b26b9aa2f88ce/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-10-24 13:09:38,300 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/d7154f54e7f48bbfa0bd61ed568b26b9aa2f88ce/check-suites?app_id=15368 HTTP/1.1" 200 None 2024-10-24 13:09:38,723 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/d7154f54e7f48bbfa0bd61ed568b26b9aa2f88ce HTTP/1.1" 200 None 2024-10-24 13:09:39,134 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/d7154f54e7f48bbfa0bd61ed568b26b9aa2f88ce?per_page=1 HTTP/1.1" 200 2 2024-10-24 13:09:39,135 [ scc.repo] DEBUG - PR 595 Rdornier 'Rotate image panel by 90°' 2024-10-24 13:09:39,585 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/592 HTTP/1.1" 200 None 2024-10-24 13:09:40,056 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/592/comments HTTP/1.1" 200 None 2024-10-24 13:09:40,572 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/41a9df405c9f6580c89a64fc2c6eed778c431b1b HTTP/1.1" 200 None 2024-10-24 13:09:41,042 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/41a9df405c9f6580c89a64fc2c6eed778c431b1b/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-10-24 13:09:41,547 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/41a9df405c9f6580c89a64fc2c6eed778c431b1b/check-suites?app_id=15368 HTTP/1.1" 200 None 2024-10-24 13:09:41,985 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/41a9df405c9f6580c89a64fc2c6eed778c431b1b HTTP/1.1" 200 None 2024-10-24 13:09:42,378 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/41a9df405c9f6580c89a64fc2c6eed778c431b1b?per_page=1 HTTP/1.1" 200 2 2024-10-24 13:09:42,378 [ scc.repo] DEBUG - PR 592 will-moore 'Filter owners and groups dropdown lists' 2024-10-24 13:09:42,832 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/591 HTTP/1.1" 200 None 2024-10-24 13:09:43,285 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/591/comments HTTP/1.1" 200 None 2024-10-24 13:09:43,286 [ scc.repo] DEBUG # ... Include label: include 2024-10-24 13:09:43,934 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/339e655bba6f9b7283bd907272429ead97e7ca5d HTTP/1.1" 200 None 2024-10-24 13:09:44,501 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/339e655bba6f9b7283bd907272429ead97e7ca5d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-10-24 13:09:44,997 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/339e655bba6f9b7283bd907272429ead97e7ca5d/check-suites?app_id=15368 HTTP/1.1" 200 None 2024-10-24 13:09:45,419 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/339e655bba6f9b7283bd907272429ead97e7ca5d HTTP/1.1" 200 None 2024-10-24 13:09:45,822 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/339e655bba6f9b7283bd907272429ead97e7ca5d?per_page=1 HTTP/1.1" 200 2 2024-10-24 13:09:45,822 [ scc.repo] DEBUG - PR 591 MinaEnayat 'Add Horizontal and Vertical Image Flipping Functionality' 2024-10-24 13:09:46,286 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/578 HTTP/1.1" 200 None 2024-10-24 13:09:46,882 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/578/comments HTTP/1.1" 200 None 2024-10-24 13:09:46,884 [ scc.repo] DEBUG # ... Include label: include 2024-10-24 13:09:47,442 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/79a706d9a7483d812f712ccb3e801e777214f31a HTTP/1.1" 200 None 2024-10-24 13:09:47,929 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/79a706d9a7483d812f712ccb3e801e777214f31a/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-10-24 13:09:48,396 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/79a706d9a7483d812f712ccb3e801e777214f31a/check-suites?app_id=15368 HTTP/1.1" 200 None 2024-10-24 13:09:48,820 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/79a706d9a7483d812f712ccb3e801e777214f31a HTTP/1.1" 200 None 2024-10-24 13:09:49,240 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/79a706d9a7483d812f712ccb3e801e777214f31a?per_page=1 HTTP/1.1" 200 2 2024-10-24 13:09:49,241 [ scc.repo] DEBUG - PR 578 Rdornier 'Image outline' 2024-10-24 13:09:49,692 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/577 HTTP/1.1" 200 None 2024-10-24 13:09:50,245 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/577/comments HTTP/1.1" 200 None 2024-10-24 13:09:50,789 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/13200965/issues/577/comments?page=2 HTTP/1.1" 200 None 2024-10-24 13:09:50,791 [ scc.repo] DEBUG # ... Include label: include 2024-10-24 13:09:51,323 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/c03b8714a73d425a3ada3eba2dd301bb281628f5 HTTP/1.1" 200 None 2024-10-24 13:09:51,802 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/c03b8714a73d425a3ada3eba2dd301bb281628f5/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-10-24 13:09:52,259 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/c03b8714a73d425a3ada3eba2dd301bb281628f5/check-suites?app_id=15368 HTTP/1.1" 200 None 2024-10-24 13:09:52,680 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/c03b8714a73d425a3ada3eba2dd301bb281628f5 HTTP/1.1" 200 None 2024-10-24 13:09:53,090 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/c03b8714a73d425a3ada3eba2dd301bb281628f5?per_page=1 HTTP/1.1" 200 2 2024-10-24 13:09:53,090 [ scc.repo] DEBUG - PR 577 Rdornier 'Fill rois' 2024-10-24 13:09:53,091 [ scc.repo] DEBUG ## Branches found: 2024-10-24 13:09:53,091 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure 2024-10-24 13:09:53,091 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:09:53,091 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:09:53,097 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-10-24 13:09:53,102 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-10-24 13:09:53,102 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-10-24 13:09:53,108 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-10-24 13:09:53,113 [ scc.git] DEBUG Already up to date. 2024-10-24 13:09:53,114 [ scc.git] DEBUG Calling 'git fetch origin pull/577/head' 2024-10-24 13:09:54,263 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2024-10-24 13:09:54,263 [ scc.git] DEBUG * branch refs/pull/577/head -> FETCH_HEAD 2024-10-24 13:09:54,266 [ scc.git] DEBUG Calling 'git fetch origin pull/578/head' 2024-10-24 13:09:55,049 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2024-10-24 13:09:55,049 [ scc.git] DEBUG * branch refs/pull/578/head -> FETCH_HEAD 2024-10-24 13:09:55,052 [ scc.git] DEBUG Calling 'git fetch origin pull/591/head' 2024-10-24 13:09:55,330 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2024-10-24 13:09:55,330 [ scc.git] DEBUG * branch refs/pull/591/head -> FETCH_HEAD 2024-10-24 13:09:55,334 [ scc.git] DEBUG Calling 'git fetch origin pull/592/head' 2024-10-24 13:09:55,672 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2024-10-24 13:09:55,672 [ scc.git] DEBUG * branch refs/pull/592/head -> FETCH_HEAD 2024-10-24 13:09:55,677 [ scc.git] DEBUG Calling 'git fetch origin pull/595/head' 2024-10-24 13:09:56,119 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2024-10-24 13:09:56,120 [ scc.git] DEBUG * branch refs/pull/595/head -> FETCH_HEAD 2024-10-24 13:09:56,122 [ scc.git] DEBUG Calling 'git fetch origin pull/598/head' 2024-10-24 13:09:56,460 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2024-10-24 13:09:56,460 [ scc.git] DEBUG * branch refs/pull/598/head -> FETCH_HEAD 2024-10-24 13:09:56,465 [ scc.git] DEBUG Calling 'git fetch origin pull/599/head' 2024-10-24 13:09:57,574 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2024-10-24 13:09:57,574 [ scc.git] DEBUG * branch refs/pull/599/head -> FETCH_HEAD 2024-10-24 13:09:57,577 [ scc.git] DEBUG ## Unique users: [] 2024-10-24 13:09:57,577 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:09:57,577 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:09:57,583 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c03b8714a73d425a3ada3eba2dd301bb281628f5' 2024-10-24 13:09:57,590 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:09:57,595 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 577 (Fill rois) c03b8714a73d425a3ada3eba2dd301bb281628f5' 2024-10-24 13:09:57,610 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-10-24 13:09:57,616 [ scc.git] DEBUG .../scripts/omero/figure_scripts/Figure_To_Pdf.py | 21 ++++++-- 2024-10-24 13:09:57,616 [ scc.git] DEBUG src/css/figure.css | 1 + 2024-10-24 13:09:57,616 [ scc.git] DEBUG src/js/models/roi_model.js | 11 ++++ 2024-10-24 13:09:57,616 [ scc.git] DEBUG src/js/shape_editor/ellipse.js | 42 ++++++++++++++- 2024-10-24 13:09:57,616 [ scc.git] DEBUG src/js/shape_editor/line.js | 16 ++++++ 2024-10-24 13:09:57,616 [ scc.git] DEBUG src/js/shape_editor/polygon.js | 40 +++++++++++++- 2024-10-24 13:09:57,616 [ scc.git] DEBUG src/js/shape_editor/rect.js | 48 +++++++++++++++-- 2024-10-24 13:09:57,616 [ scc.git] DEBUG src/js/shape_editor/shape_manager.js | 62 +++++++++++++++++++++- 2024-10-24 13:09:57,616 [ scc.git] DEBUG src/js/views/roi_modal_view.js | 34 ++++++++++-- 2024-10-24 13:09:57,616 [ scc.git] DEBUG src/templates/shapes/shape_toolbar.template.html | 56 ++++++++++++++++++- 2024-10-24 13:09:57,618 [ scc.git] DEBUG 10 files changed, 314 insertions(+), 17 deletions(-) 2024-10-24 13:09:57,773 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:09:57,774 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...79a706d9a7483d812f712ccb3e801e777214f31a' 2024-10-24 13:09:57,782 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:09:57,786 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 578 (Image outline) 79a706d9a7483d812f712ccb3e801e777214f31a' 2024-10-24 13:09:58,337 [ scc.git] DEBUG Auto-merging omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 2024-10-24 13:09:58,337 [ scc.git] DEBUG Auto-merging src/css/figure.css 2024-10-24 13:09:58,337 [ scc.git] DEBUG Auto-merging src/js/views/roi_modal_view.js 2024-10-24 13:09:58,338 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-10-24 13:09:58,344 [ scc.git] DEBUG .../scripts/omero/figure_scripts/Figure_To_Pdf.py | 231 ++++++++++++++------- 2024-10-24 13:09:58,344 [ scc.git] DEBUG src/css/figure.css | 1 + 2024-10-24 13:09:58,344 [ scc.git] DEBUG src/js/models/panel_model.js | 31 +++ 2024-10-24 13:09:58,344 [ scc.git] DEBUG src/js/views/panel_view.js | 53 ++++- 2024-10-24 13:09:58,344 [ scc.git] DEBUG src/js/views/right_panel_view.js | 56 ++++- 2024-10-24 13:09:58,344 [ scc.git] DEBUG src/templates/rois_form.template.html | 68 +++++- 2024-10-24 13:09:58,344 [ scc.git] DEBUG 6 files changed, 361 insertions(+), 79 deletions(-) 2024-10-24 13:09:58,480 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:09:58,481 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...339e655bba6f9b7283bd907272429ead97e7ca5d' 2024-10-24 13:09:58,490 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:09:58,495 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 591 (Add Horizontal and Vertical Image Flipping Functionality) 339e655bba6f9b7283bd907272429ead97e7ca5d' 2024-10-24 13:09:58,741 [ scc.git] DEBUG Auto-merging omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 2024-10-24 13:09:58,741 [ scc.git] DEBUG Auto-merging src/css/figure.css 2024-10-24 13:09:58,741 [ scc.git] DEBUG Auto-merging src/js/models/panel_model.js 2024-10-24 13:09:58,741 [ scc.git] DEBUG Auto-merging src/js/views/panel_view.js 2024-10-24 13:09:58,741 [ scc.git] DEBUG Auto-merging src/js/views/right_panel_view.js 2024-10-24 13:09:58,741 [ scc.git] DEBUG Auto-merging src/js/views/roi_modal_view.js 2024-10-24 13:09:58,742 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-10-24 13:09:58,748 [ scc.git] DEBUG .../scripts/omero/figure_scripts/Figure_To_Pdf.py | 71 +++++++++++++++++++- 2024-10-24 13:09:58,748 [ scc.git] DEBUG src/css/figure.css | 14 ++++ 2024-10-24 13:09:58,748 [ scc.git] DEBUG src/index.html | 1 + 2024-10-24 13:09:58,748 [ scc.git] DEBUG src/js/models/panel_model.js | 9 ++- 2024-10-24 13:09:58,748 [ scc.git] DEBUG src/js/views/panel_view.js | 4 +- 2024-10-24 13:09:58,748 [ scc.git] DEBUG src/js/views/right_panel_view.js | 75 +++++++++++++++++++++- 2024-10-24 13:09:58,748 [ scc.git] DEBUG src/js/views/roi_modal_view.js | 10 +-- 2024-10-24 13:09:58,748 [ scc.git] DEBUG src/templates/image_display_options.template.html | 11 +++- 2024-10-24 13:09:58,748 [ scc.git] DEBUG 8 files changed, 178 insertions(+), 17 deletions(-) 2024-10-24 13:09:58,881 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:09:58,881 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...41a9df405c9f6580c89a64fc2c6eed778c431b1b' 2024-10-24 13:09:58,891 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:09:58,895 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 592 (Filter owners and groups dropdown lists) 41a9df405c9f6580c89a64fc2c6eed778c431b1b' 2024-10-24 13:09:59,018 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-10-24 13:09:59,022 [ scc.git] DEBUG src/js/views/files.js | 33 ++++++++++++++++++++++++--------- 2024-10-24 13:09:59,022 [ scc.git] DEBUG 1 file changed, 24 insertions(+), 9 deletions(-) 2024-10-24 13:09:59,266 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:09:59,267 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d7154f54e7f48bbfa0bd61ed568b26b9aa2f88ce' 2024-10-24 13:09:59,275 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:09:59,280 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 595 (Rotate image panel by 90°) d7154f54e7f48bbfa0bd61ed568b26b9aa2f88ce' 2024-10-24 13:09:59,302 [ scc.git] DEBUG Auto-merging src/css/figure.css 2024-10-24 13:09:59,302 [ scc.git] DEBUG Auto-merging src/js/models/panel_model.js 2024-10-24 13:09:59,302 [ scc.git] DEBUG Auto-merging src/js/views/panel_view.js 2024-10-24 13:09:59,302 [ scc.git] DEBUG Auto-merging src/js/views/right_panel_view.js 2024-10-24 13:09:59,302 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/js/views/right_panel_view.js 2024-10-24 13:09:59,302 [ scc.git] DEBUG Auto-merging src/templates/image_display_options.template.html 2024-10-24 13:09:59,302 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/templates/image_display_options.template.html 2024-10-24 13:09:59,302 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2024-10-24 13:09:59,303 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2024-10-24 13:09:59,309 [ scc.git] DEBUG Calling 'git reset --hard b05c5c004542ae2b6ecc8ec611f808bdf4fd9663' 2024-10-24 13:09:59,318 [ scc.git] DEBUG HEAD is now at b05c5c00 merge master -Dorg -Ssuccess-only: PR 592 (Filter owners and groups dropdown lists) 2024-10-24 13:09:59,652 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:09:59,653 [ scc.git] DEBUG Calling 'git merge-base 24444fe6bf35af27230c28e466f9819b08853118 d7154f54e7f48bbfa0bd61ed568b26b9aa2f88ce' 2024-10-24 13:09:59,659 [ scc.git] DEBUG Calling 'git diff --name-only 24444fe6bf35af27230c28e466f9819b08853118..24444fe6bf35af27230c28e466f9819b08853118' 2024-10-24 13:09:59,665 [ scc.git] INFO - PR 595 Rdornier 'Rotate image panel by 90°' Conflicting PR. Removed from build [OMERO-plugins-push#222](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/222/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/222/consoleText) for more details. Possible conflicts: - PR #578 Rdornier 'Image outline' - src/js/views/right_panel_view.js - PR #591 MinaEnayat 'Add Horizontal and Vertical Image Flipping Functionality' - src/templates/image_display_options.template.html - src/js/views/right_panel_view.js --conflicts 2024-10-24 13:09:59,669 [ scc.config] DEBUG Found github.token 2024-10-24 13:09:59,669 [ scc.git] DEBUG Adding comment to issue #595. 2024-10-24 13:10:00,495 [urllib3.conn] DEBUG https://api.github.com:443 "POST /repos/ome/omero-figure/issues/595/comments HTTP/1.1" 201 2193 2024-10-24 13:10:00,496 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3c170054f782fb9ac230c740c32dceac9e50c618' 2024-10-24 13:10:00,504 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:10:00,508 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 598 (Query timestamps from all planes when C or Z dimensions are not filled) 3c170054f782fb9ac230c740c32dceac9e50c618' 2024-10-24 13:10:00,628 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-10-24 13:10:00,632 [ scc.git] DEBUG omero_figure/omeroutils.py | 25 +++++++++++++++++++++++++ 2024-10-24 13:10:00,632 [ scc.git] DEBUG 1 file changed, 25 insertions(+) 2024-10-24 13:10:00,881 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:10:00,882 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...f42e17d64b673b0b34c93dec1b67d60b92445964' 2024-10-24 13:10:00,892 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:10:00,896 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 599 (Patch label text selection and cue for dragging) f42e17d64b673b0b34c93dec1b67d60b92445964' 2024-10-24 13:10:00,963 [ scc.git] DEBUG Auto-merging src/css/figure.css 2024-10-24 13:10:00,964 [ scc.git] DEBUG Auto-merging src/index.html 2024-10-24 13:10:00,964 [ scc.git] DEBUG Auto-merging src/js/views/right_panel_view.js 2024-10-24 13:10:00,964 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-10-24 13:10:00,969 [ scc.git] DEBUG src/css/figure.css | 12 ++++++++++-- 2024-10-24 13:10:00,969 [ scc.git] DEBUG src/index.html | 2 +- 2024-10-24 13:10:00,969 [ scc.git] DEBUG src/js/views/right_panel_view.js | 4 +++- 2024-10-24 13:10:00,969 [ scc.git] DEBUG src/templates/labels_form_inner.template.html | 7 ++++--- 2024-10-24 13:10:00,969 [ scc.git] DEBUG 4 files changed, 18 insertions(+), 7 deletions(-) 2024-10-24 13:10:01,285 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:10:01,286 [ scc.git] DEBUG Calling 'git submodule update' 2024-10-24 13:10:01,323 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:10:01,323 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:10:01,328 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-10-24 13:10:01,362 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-10-24 13:10:01,370 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7b8e053820> has no local changes 2024-10-24 13:10:01,370 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-figure Excluded PRs: - PR 597 Rdornier 'Rounding zoom label in pdf' (user: Rdornier) - PR 596 Tom-TBT 'Dynamic lut for figure' (user: Tom-TBT) - PR 543 will-moore 'Plate well labels' (exclude comment) Already up to date. Merged PRs: - PR 577 Rdornier 'Fill rois' - PR 578 Rdornier 'Image outline' - PR 591 MinaEnayat 'Add Horizontal and Vertical Image Flipping Functionality' - PR 592 will-moore 'Filter owners and groups dropdown lists' - PR 598 Tom-TBT 'Query timestamps from all planes when C or Z dimensions are not filled' - PR 599 Tom-TBT 'Patch label text selection and cue for dragging' Conflicting PRs (not included): - PR 595 Rdornier 'Rotate image panel by 90°' Generated by OMERO-plugins-push#222 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/222/)' 2024-10-24 13:10:01,380 [ scc.git] DEBUG [detached HEAD 1a7938b1] merge master -Dorg -Ssuccess-only 2024-10-24 13:10:01,380 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:10:01,381 [ scc.repo] DEBUG ## PRs found: 2024-10-24 13:10:01,822 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/pulls HTTP/1.1" 200 None 2024-10-24 13:10:02,263 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/18 HTTP/1.1" 200 None 2024-10-24 13:10:02,713 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/18/comments HTTP/1.1" 200 None 2024-10-24 13:10:03,256 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337 HTTP/1.1" 200 None 2024-10-24 13:10:03,730 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-10-24 13:10:04,142 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337 HTTP/1.1" 200 None 2024-10-24 13:10:04,555 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/statuses/45aed4d15501fa5a524a8b500af8d426f0f6b337?per_page=1 HTTP/1.1" 200 2 2024-10-24 13:10:04,556 [ scc.repo] DEBUG - PR 18 jburel 'default size z value' 2024-10-24 13:10:04,556 [ scc.repo] DEBUG ## Branches found: 2024-10-24 13:10:04,556 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage 2024-10-24 13:10:04,556 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:10:04,556 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:10:04,562 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-10-24 13:10:04,566 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-10-24 13:10:04,567 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-10-24 13:10:04,571 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-10-24 13:10:04,576 [ scc.git] DEBUG Already up to date. 2024-10-24 13:10:04,577 [ scc.git] DEBUG Calling 'git fetch origin pull/18/head' 2024-10-24 13:10:04,891 [ scc.git] DEBUG From https://github.com/ome/omero-fpbioimage 2024-10-24 13:10:04,891 [ scc.git] DEBUG * branch refs/pull/18/head -> FETCH_HEAD 2024-10-24 13:10:04,894 [ scc.git] DEBUG ## Unique users: [] 2024-10-24 13:10:04,894 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:10:04,894 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:10:04,899 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45aed4d15501fa5a524a8b500af8d426f0f6b337' 2024-10-24 13:10:04,904 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:10:04,909 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 18 (default size z value) 45aed4d15501fa5a524a8b500af8d426f0f6b337' 2024-10-24 13:10:04,929 [ scc.git] DEBUG Auto-merging omero_fpbioimage/views.py 2024-10-24 13:10:04,930 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-10-24 13:10:04,932 [ scc.git] DEBUG omero_fpbioimage/views.py | 2 ++ 2024-10-24 13:10:04,932 [ scc.git] DEBUG 1 file changed, 2 insertions(+) 2024-10-24 13:10:05,072 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:10:05,073 [ scc.git] DEBUG Calling 'git submodule update' 2024-10-24 13:10:05,108 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:10:05,108 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:10:05,112 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-10-24 13:10:05,148 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-10-24 13:10:05,154 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7b8e01a9d0> has no local changes 2024-10-24 13:10:05,154 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-fpbioimage Already up to date. Merged PRs: - PR 18 jburel 'default size z value' Generated by OMERO-plugins-push#222 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/222/)' 2024-10-24 13:10:05,161 [ scc.git] DEBUG [detached HEAD 7c1b347] merge master -Dorg -Ssuccess-only 2024-10-24 13:10:05,161 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:10:05,161 [ scc.repo] DEBUG ## PRs found: 2024-10-24 13:10:05,547 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/pulls HTTP/1.1" 200 None 2024-10-24 13:10:05,996 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/111 HTTP/1.1" 200 None 2024-10-24 13:10:05,997 [ scc.repo] DEBUG # ... Include label: dependencies 2024-10-24 13:10:06,578 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/37cfaf2f52e78b2cab2f49b0c02c7553d2b57893 HTTP/1.1" 200 None 2024-10-24 13:10:07,039 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/37cfaf2f52e78b2cab2f49b0c02c7553d2b57893/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-10-24 13:10:07,615 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/37cfaf2f52e78b2cab2f49b0c02c7553d2b57893/check-suites?app_id=15368 HTTP/1.1" 200 None 2024-10-24 13:10:08,062 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/37cfaf2f52e78b2cab2f49b0c02c7553d2b57893 HTTP/1.1" 200 None 2024-10-24 13:10:08,460 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/37cfaf2f52e78b2cab2f49b0c02c7553d2b57893?per_page=1 HTTP/1.1" 200 2 2024-10-24 13:10:08,461 [ scc.repo] DEBUG - PR 111 dependabot[bot] 'Bump semver from 5.7.0 to 5.7.2' 2024-10-24 13:10:08,461 [ scc.repo] DEBUG ## Branches found: 2024-10-24 13:10:08,461 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery 2024-10-24 13:10:08,461 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:10:08,461 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:10:08,467 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-10-24 13:10:08,471 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-10-24 13:10:08,472 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-10-24 13:10:08,476 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-10-24 13:10:08,482 [ scc.git] DEBUG Already up to date. 2024-10-24 13:10:08,482 [ scc.git] DEBUG Calling 'git fetch origin pull/111/head' 2024-10-24 13:10:08,811 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2024-10-24 13:10:08,811 [ scc.git] DEBUG * branch refs/pull/111/head -> FETCH_HEAD 2024-10-24 13:10:08,815 [ scc.git] DEBUG ## Unique users: [] 2024-10-24 13:10:08,815 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:10:08,816 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:10:08,820 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...37cfaf2f52e78b2cab2f49b0c02c7553d2b57893' 2024-10-24 13:10:08,826 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:10:08,831 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 111 (Bump semver from 5.7.0 to 5.7.2) 37cfaf2f52e78b2cab2f49b0c02c7553d2b57893' 2024-10-24 13:10:08,840 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-10-24 13:10:08,844 [ scc.git] DEBUG package-lock.json | 18 ++++++------------ 2024-10-24 13:10:08,844 [ scc.git] DEBUG 1 file changed, 6 insertions(+), 12 deletions(-) 2024-10-24 13:10:08,979 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:10:08,980 [ scc.git] DEBUG Calling 'git submodule update' 2024-10-24 13:10:09,014 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:10:09,014 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:10:09,018 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-10-24 13:10:09,052 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-10-24 13:10:09,059 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7b8e012dc0> has no local changes 2024-10-24 13:10:09,059 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-gallery Already up to date. Merged PRs: - PR 111 dependabot[bot] 'Bump semver from 5.7.0 to 5.7.2' Generated by OMERO-plugins-push#222 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/222/)' 2024-10-24 13:10:09,066 [ scc.git] DEBUG [detached HEAD 0327d80] merge master -Dorg -Ssuccess-only 2024-10-24 13:10:09,067 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:10:09,067 [ scc.repo] DEBUG ## PRs found: 2024-10-24 13:10:09,939 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls HTTP/1.1" 200 None 2024-10-24 13:10:10,418 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/486 HTTP/1.1" 200 None 2024-10-24 13:10:10,933 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/485 HTTP/1.1" 200 None 2024-10-24 13:10:11,413 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/484 HTTP/1.1" 200 None 2024-10-24 13:10:11,887 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/484/comments HTTP/1.1" 200 None 2024-10-24 13:10:11,888 [ scc.repo] DEBUG # ... Include label: include 2024-10-24 13:10:12,403 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/233e0442b0f738b5aeffd80bd4c7549ea9d5cc81 HTTP/1.1" 200 None 2024-10-24 13:10:12,946 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/233e0442b0f738b5aeffd80bd4c7549ea9d5cc81/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-10-24 13:10:13,406 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/233e0442b0f738b5aeffd80bd4c7549ea9d5cc81/check-suites?app_id=15368 HTTP/1.1" 200 None 2024-10-24 13:10:13,891 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/233e0442b0f738b5aeffd80bd4c7549ea9d5cc81 HTTP/1.1" 200 None 2024-10-24 13:10:14,301 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/233e0442b0f738b5aeffd80bd4c7549ea9d5cc81?per_page=1 HTTP/1.1" 200 2 2024-10-24 13:10:14,302 [ scc.repo] DEBUG - PR 484 barrettMCW 'improved mirroring' 2024-10-24 13:10:14,759 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/483 HTTP/1.1" 200 None 2024-10-24 13:10:14,760 [ scc.repo] DEBUG # ... Include label: dependencies 2024-10-24 13:10:15,323 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/384771c9fd794e2b472a35dca65e6ed96be98c4d HTTP/1.1" 200 None 2024-10-24 13:10:15,825 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/384771c9fd794e2b472a35dca65e6ed96be98c4d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-10-24 13:10:16,321 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/384771c9fd794e2b472a35dca65e6ed96be98c4d/check-suites?app_id=15368 HTTP/1.1" 200 None 2024-10-24 13:10:16,886 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/384771c9fd794e2b472a35dca65e6ed96be98c4d HTTP/1.1" 200 None 2024-10-24 13:10:17,295 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/384771c9fd794e2b472a35dca65e6ed96be98c4d?per_page=1 HTTP/1.1" 200 2 2024-10-24 13:10:17,295 [ scc.repo] DEBUG - PR 483 dependabot[bot] 'Bump webpack from 5.82.0 to 5.94.0' 2024-10-24 13:10:17,761 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/482 HTTP/1.1" 200 None 2024-10-24 13:10:18,216 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/482/comments HTTP/1.1" 200 None 2024-10-24 13:10:18,764 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/7e1dd40572c8cc9a1bdc4cb1ff58c82367c89b1b HTTP/1.1" 200 None 2024-10-24 13:10:19,251 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/7e1dd40572c8cc9a1bdc4cb1ff58c82367c89b1b/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-10-24 13:10:19,777 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/7e1dd40572c8cc9a1bdc4cb1ff58c82367c89b1b/check-suites?app_id=15368 HTTP/1.1" 200 None 2024-10-24 13:10:20,202 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/7e1dd40572c8cc9a1bdc4cb1ff58c82367c89b1b HTTP/1.1" 200 None 2024-10-24 13:10:20,598 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/7e1dd40572c8cc9a1bdc4cb1ff58c82367c89b1b?per_page=1 HTTP/1.1" 200 2 2024-10-24 13:10:20,598 [ scc.repo] DEBUG - PR 482 will-moore 'Support ?collapse_left/right and ?full_page=true' 2024-10-24 13:10:21,068 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/478 HTTP/1.1" 200 None 2024-10-24 13:10:21,069 [ scc.repo] DEBUG # ... Include label: dependencies 2024-10-24 13:10:21,715 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/91cd18bb57d92337a1fb0c60a10824e5d057ee11 HTTP/1.1" 200 None 2024-10-24 13:10:22,242 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/91cd18bb57d92337a1fb0c60a10824e5d057ee11/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-10-24 13:10:22,740 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/91cd18bb57d92337a1fb0c60a10824e5d057ee11/check-suites?app_id=15368 HTTP/1.1" 200 None 2024-10-24 13:10:23,293 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/91cd18bb57d92337a1fb0c60a10824e5d057ee11 HTTP/1.1" 200 None 2024-10-24 13:10:23,695 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/91cd18bb57d92337a1fb0c60a10824e5d057ee11?per_page=1 HTTP/1.1" 200 2 2024-10-24 13:10:23,696 [ scc.repo] DEBUG - PR 478 dependabot[bot] 'Bump socket.io from 4.6.1 to 4.7.5' 2024-10-24 13:10:24,170 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/477 HTTP/1.1" 200 None 2024-10-24 13:10:24,171 [ scc.repo] DEBUG # ... Include label: dependencies 2024-10-24 13:10:24,816 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/274749c0dfc8162eaf89cdb16a9ef23195d5d5b5 HTTP/1.1" 200 None 2024-10-24 13:10:25,297 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/274749c0dfc8162eaf89cdb16a9ef23195d5d5b5/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-10-24 13:10:25,803 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/274749c0dfc8162eaf89cdb16a9ef23195d5d5b5/check-suites?app_id=15368 HTTP/1.1" 200 None 2024-10-24 13:10:26,381 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/274749c0dfc8162eaf89cdb16a9ef23195d5d5b5 HTTP/1.1" 200 None 2024-10-24 13:10:26,814 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/274749c0dfc8162eaf89cdb16a9ef23195d5d5b5?per_page=1 HTTP/1.1" 200 2 2024-10-24 13:10:26,815 [ scc.repo] DEBUG - PR 477 dependabot[bot] 'Bump ws and socket.io' 2024-10-24 13:10:27,261 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/471 HTTP/1.1" 200 None 2024-10-24 13:10:27,707 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/471/comments HTTP/1.1" 200 None 2024-10-24 13:10:28,232 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9 HTTP/1.1" 200 None 2024-10-24 13:10:28,801 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-10-24 13:10:29,299 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9/check-suites?app_id=15368 HTTP/1.1" 200 None 2024-10-24 13:10:29,788 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9 HTTP/1.1" 200 None 2024-10-24 13:10:30,181 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/448d042a58da05a522531356cc58c1e35b5744d9?per_page=1 HTTP/1.1" 200 2 2024-10-24 13:10:30,182 [ scc.repo] DEBUG - PR 471 will-moore 'Z projection disabled tooltip' 2024-10-24 13:10:30,629 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/465 HTTP/1.1" 200 None 2024-10-24 13:10:31,120 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/465/comments HTTP/1.1" 200 None 2024-10-24 13:10:31,662 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/63dd9266a853ff522780066673d0ae2b770238cd HTTP/1.1" 200 None 2024-10-24 13:10:32,110 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/63dd9266a853ff522780066673d0ae2b770238cd/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-10-24 13:10:32,630 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/63dd9266a853ff522780066673d0ae2b770238cd/check-suites?app_id=15368 HTTP/1.1" 200 None 2024-10-24 13:10:33,076 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/63dd9266a853ff522780066673d0ae2b770238cd HTTP/1.1" 200 None 2024-10-24 13:10:33,493 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/63dd9266a853ff522780066673d0ae2b770238cd?per_page=1 HTTP/1.1" 200 2 2024-10-24 13:10:33,493 [ scc.repo] DEBUG - PR 465 will-moore 'Save as Figure' 2024-10-24 13:10:33,927 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/460 HTTP/1.1" 200 None 2024-10-24 13:10:34,359 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/460/comments HTTP/1.1" 200 None 2024-10-24 13:10:34,904 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/dada2c46211e3bf8015cc47464ab2761ef74ca30 HTTP/1.1" 200 None 2024-10-24 13:10:35,462 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/dada2c46211e3bf8015cc47464ab2761ef74ca30/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-10-24 13:10:36,006 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/dada2c46211e3bf8015cc47464ab2761ef74ca30 HTTP/1.1" 200 None 2024-10-24 13:10:36,408 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/dada2c46211e3bf8015cc47464ab2761ef74ca30?per_page=1 HTTP/1.1" 200 2 2024-10-24 13:10:36,408 [ scc.repo] DEBUG - PR 460 will-moore 'Channel min spinner fix' 2024-10-24 13:10:36,409 [ scc.repo] DEBUG ## Branches found: 2024-10-24 13:10:36,409 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer 2024-10-24 13:10:36,409 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:10:36,409 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:10:36,414 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-10-24 13:10:36,419 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-10-24 13:10:36,419 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-10-24 13:10:36,621 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-10-24 13:10:36,626 [ scc.git] DEBUG Already up to date. 2024-10-24 13:10:36,627 [ scc.git] DEBUG Calling 'git fetch origin pull/460/head' 2024-10-24 13:10:37,572 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2024-10-24 13:10:37,573 [ scc.git] DEBUG * branch refs/pull/460/head -> FETCH_HEAD 2024-10-24 13:10:37,576 [ scc.git] DEBUG Calling 'git fetch origin pull/465/head' 2024-10-24 13:10:39,317 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2024-10-24 13:10:39,317 [ scc.git] DEBUG * branch refs/pull/465/head -> FETCH_HEAD 2024-10-24 13:10:39,321 [ scc.git] DEBUG Calling 'git fetch origin pull/471/head' 2024-10-24 13:10:39,723 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2024-10-24 13:10:39,723 [ scc.git] DEBUG * branch refs/pull/471/head -> FETCH_HEAD 2024-10-24 13:10:39,727 [ scc.git] DEBUG Calling 'git fetch origin pull/477/head' 2024-10-24 13:10:40,037 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2024-10-24 13:10:40,037 [ scc.git] DEBUG * branch refs/pull/477/head -> FETCH_HEAD 2024-10-24 13:10:40,041 [ scc.git] DEBUG Calling 'git fetch origin pull/478/head' 2024-10-24 13:10:40,350 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2024-10-24 13:10:40,350 [ scc.git] DEBUG * branch refs/pull/478/head -> FETCH_HEAD 2024-10-24 13:10:40,354 [ scc.git] DEBUG Calling 'git fetch origin pull/482/head' 2024-10-24 13:10:41,194 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2024-10-24 13:10:41,194 [ scc.git] DEBUG * branch refs/pull/482/head -> FETCH_HEAD 2024-10-24 13:10:41,198 [ scc.git] DEBUG Calling 'git fetch origin pull/483/head' 2024-10-24 13:10:41,476 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2024-10-24 13:10:41,477 [ scc.git] DEBUG * branch refs/pull/483/head -> FETCH_HEAD 2024-10-24 13:10:41,480 [ scc.git] DEBUG Calling 'git fetch origin pull/484/head' 2024-10-24 13:10:42,134 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2024-10-24 13:10:42,134 [ scc.git] DEBUG * branch refs/pull/484/head -> FETCH_HEAD 2024-10-24 13:10:42,138 [ scc.git] DEBUG ## Unique users: [] 2024-10-24 13:10:42,138 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:10:42,138 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:10:42,142 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...dada2c46211e3bf8015cc47464ab2761ef74ca30' 2024-10-24 13:10:42,148 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:10:42,152 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 460 (Channel min spinner fix) dada2c46211e3bf8015cc47464ab2761ef74ca30' 2024-10-24 13:10:42,163 [ scc.git] DEBUG Auto-merging src/model/image_info.js 2024-10-24 13:10:42,164 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-10-24 13:10:42,166 [ scc.git] DEBUG src/model/image_info.js | 7 ++++--- 2024-10-24 13:10:42,166 [ scc.git] DEBUG src/settings/channel-range.js | 4 +++- 2024-10-24 13:10:42,166 [ scc.git] DEBUG 2 files changed, 7 insertions(+), 4 deletions(-) 2024-10-24 13:10:42,296 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:10:42,297 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...63dd9266a853ff522780066673d0ae2b770238cd' 2024-10-24 13:10:42,303 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:10:42,307 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 465 (Save as Figure) 63dd9266a853ff522780066673d0ae2b770238cd' 2024-10-24 13:10:42,620 [ scc.git] DEBUG Auto-merging plugin/omero_iviewer/views.py 2024-10-24 13:10:42,621 [ scc.git] DEBUG Auto-merging src/app/context.js 2024-10-24 13:10:42,621 [ scc.git] DEBUG Auto-merging src/utils/constants.js 2024-10-24 13:10:42,621 [ scc.git] DEBUG Auto-merging src/viewers/viewer/Viewer.js 2024-10-24 13:10:42,621 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-10-24 13:10:42,625 [ scc.git] DEBUG plugin/omero_iviewer/views.py | 17 +++- 2024-10-24 13:10:42,625 [ scc.git] DEBUG src/app/context.js | 6 +- 2024-10-24 13:10:42,625 [ scc.git] DEBUG src/app/header.html | 5 + 2024-10-24 13:10:42,625 [ scc.git] DEBUG src/app/header.js | 45 ++++++++- 2024-10-24 13:10:42,625 [ scc.git] DEBUG src/utils/constants.js | 6 ++ 2024-10-24 13:10:42,625 [ scc.git] DEBUG src/utils/figure.js | 217 ++++++++++++++++++++++++++++++++++++++++++ 2024-10-24 13:10:42,625 [ scc.git] DEBUG 6 files changed, 290 insertions(+), 6 deletions(-) 2024-10-24 13:10:42,625 [ scc.git] DEBUG create mode 100644 src/utils/figure.js 2024-10-24 13:10:42,758 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:10:42,758 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...448d042a58da05a522531356cc58c1e35b5744d9' 2024-10-24 13:10:42,764 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:10:42,768 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 471 (Z projection disabled tooltip) 448d042a58da05a522531356cc58c1e35b5744d9' 2024-10-24 13:10:42,806 [ scc.git] DEBUG Auto-merging src/controls/dimension-slider.js 2024-10-24 13:10:42,807 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-10-24 13:10:42,809 [ scc.git] DEBUG src/controls/dimension-slider.html | 2 +- 2024-10-24 13:10:42,809 [ scc.git] DEBUG src/controls/dimension-slider.js | 20 ++++++++++++++++++++ 2024-10-24 13:10:42,809 [ scc.git] DEBUG 2 files changed, 21 insertions(+), 1 deletion(-) 2024-10-24 13:10:43,141 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:10:43,142 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...274749c0dfc8162eaf89cdb16a9ef23195d5d5b5' 2024-10-24 13:10:43,148 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:10:43,153 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 477 (Bump ws and socket.io) 274749c0dfc8162eaf89cdb16a9ef23195d5d5b5' 2024-10-24 13:10:43,167 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-10-24 13:10:43,176 [ scc.git] DEBUG package-lock.json | 108 ++++++++++++++++++++++++++++++++++-------------------- 2024-10-24 13:10:43,176 [ scc.git] DEBUG 1 file changed, 68 insertions(+), 40 deletions(-) 2024-10-24 13:10:43,529 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:10:43,529 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...91cd18bb57d92337a1fb0c60a10824e5d057ee11' 2024-10-24 13:10:43,538 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:10:43,542 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 478 (Bump socket.io from 4.6.1 to 4.7.5) 91cd18bb57d92337a1fb0c60a10824e5d057ee11' 2024-10-24 13:10:43,621 [ scc.git] DEBUG Auto-merging package-lock.json 2024-10-24 13:10:43,622 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-10-24 13:10:43,923 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:10:43,924 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...7e1dd40572c8cc9a1bdc4cb1ff58c82367c89b1b' 2024-10-24 13:10:43,930 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:10:43,934 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 482 (Support ?collapse_left/right and ?full_page=true) 7e1dd40572c8cc9a1bdc4cb1ff58c82367c89b1b' 2024-10-24 13:10:44,022 [ scc.git] DEBUG Auto-merging src/app/context.js 2024-10-24 13:10:44,022 [ scc.git] DEBUG Auto-merging src/model/image_info.js 2024-10-24 13:10:44,022 [ scc.git] DEBUG Auto-merging src/utils/constants.js 2024-10-24 13:10:44,022 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-10-24 13:10:44,026 [ scc.git] DEBUG src/app/context.js | 12 +++++++++++ 2024-10-24 13:10:44,026 [ scc.git] DEBUG src/app/index.js | 5 +---- 2024-10-24 13:10:44,026 [ scc.git] DEBUG src/model/image_info.js | 1 - 2024-10-24 13:10:44,026 [ scc.git] DEBUG src/utils/constants.js | 5 ++++- 2024-10-24 13:10:44,026 [ scc.git] DEBUG src/utils/ui.js | 44 ++++++++++++++++++++++---------------- 2024-10-24 13:10:44,026 [ scc.git] DEBUG src/viewers/viewer/source/Image.js | 1 - 2024-10-24 13:10:44,026 [ scc.git] DEBUG 6 files changed, 42 insertions(+), 26 deletions(-) 2024-10-24 13:10:44,309 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:10:44,309 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...384771c9fd794e2b472a35dca65e6ed96be98c4d' 2024-10-24 13:10:44,381 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:10:44,386 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 483 (Bump webpack from 5.82.0 to 5.94.0) 384771c9fd794e2b472a35dca65e6ed96be98c4d' 2024-10-24 13:10:44,616 [ scc.git] DEBUG Auto-merging package-lock.json 2024-10-24 13:10:44,617 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-10-24 13:10:44,625 [ scc.git] DEBUG package-lock.json | 686 ++++++++++++++++++++++++++---------------------------- 2024-10-24 13:10:44,625 [ scc.git] DEBUG package.json | 2 +- 2024-10-24 13:10:44,625 [ scc.git] DEBUG 2 files changed, 329 insertions(+), 359 deletions(-) 2024-10-24 13:10:44,759 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:10:44,760 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...233e0442b0f738b5aeffd80bd4c7549ea9d5cc81' 2024-10-24 13:10:44,766 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:10:44,770 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 484 (improved mirroring) 233e0442b0f738b5aeffd80bd4c7549ea9d5cc81' 2024-10-24 13:10:44,826 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-10-24 13:10:44,828 [ scc.git] DEBUG src/viewers/viewer/controls/Mirror.js | 235 ++++++++++++++++------------------ 2024-10-24 13:10:44,829 [ scc.git] DEBUG 1 file changed, 111 insertions(+), 124 deletions(-) 2024-10-24 13:10:45,196 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:10:45,197 [ scc.git] DEBUG Calling 'git submodule update' 2024-10-24 13:10:45,231 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:10:45,231 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:10:45,235 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-10-24 13:10:45,271 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-10-24 13:10:45,280 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7b8dfe9430> has no local changes 2024-10-24 13:10:45,281 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-iviewer Excluded PRs: - PR 486 Tom-TBT 'Query timestamps from all planes when C or Z dimensions are not filled' (user: Tom-TBT) - PR 485 Tom-TBT 'Dynamic LUT for iviewer' (user: Tom-TBT) - PR 420 will-moore 'Add release process to README' (exclude comment) - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment) Already up to date. Merged PRs: - PR 460 will-moore 'Channel min spinner fix' - PR 465 will-moore 'Save as Figure' - PR 471 will-moore 'Z projection disabled tooltip' - PR 477 dependabot[bot] 'Bump ws and socket.io' - PR 478 dependabot[bot] 'Bump socket.io from 4.6.1 to 4.7.5' - PR 482 will-moore 'Support ?collapse_left/right and ?full_page=true' - PR 483 dependabot[bot] 'Bump webpack from 5.82.0 to 5.94.0' - PR 484 barrettMCW 'improved mirroring' Generated by OMERO-plugins-push#222 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/222/)' 2024-10-24 13:10:45,289 [ scc.git] DEBUG [detached HEAD 451da20] merge master -Dorg -Ssuccess-only 2024-10-24 13:10:45,289 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:10:45,289 [ scc.repo] DEBUG ## PRs found: 2024-10-24 13:10:45,686 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/pulls HTTP/1.1" 200 None 2024-10-24 13:10:46,122 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/87 HTTP/1.1" 200 None 2024-10-24 13:10:46,561 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/87/comments HTTP/1.1" 200 None 2024-10-24 13:10:47,106 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/c9642f31154cd66dd416599d485409543b18618a HTTP/1.1" 200 None 2024-10-24 13:10:47,614 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/c9642f31154cd66dd416599d485409543b18618a/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-10-24 13:10:48,049 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/c9642f31154cd66dd416599d485409543b18618a/check-suites?app_id=15368 HTTP/1.1" 200 None 2024-10-24 13:10:48,592 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/86 HTTP/1.1" 200 None 2024-10-24 13:10:49,047 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/86/comments HTTP/1.1" 200 None 2024-10-24 13:10:49,575 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/c698c730a10c08fde992fdc12bc1c2fab329957b HTTP/1.1" 200 None 2024-10-24 13:10:50,028 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/c698c730a10c08fde992fdc12bc1c2fab329957b/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-10-24 13:10:50,458 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/c698c730a10c08fde992fdc12bc1c2fab329957b/check-suites?app_id=15368 HTTP/1.1" 200 None 2024-10-24 13:10:50,922 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None 2024-10-24 13:10:51,447 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None 2024-10-24 13:10:51,948 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None 2024-10-24 13:10:52,368 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-10-24 13:10:52,783 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None 2024-10-24 13:10:53,202 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/45ee35acc44a7d119aa20b38b0427efbe5405322?per_page=1 HTTP/1.1" 200 2 2024-10-24 13:10:53,202 [ scc.repo] DEBUG - PR 74 will-moore 'mapr extension of webclient' 2024-10-24 13:10:53,202 [ scc.repo] DEBUG ## Branches found: 2024-10-24 13:10:53,202 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr 2024-10-24 13:10:53,203 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:10:53,203 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:10:53,208 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-10-24 13:10:53,212 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-10-24 13:10:53,212 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-10-24 13:10:53,217 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-10-24 13:10:53,222 [ scc.git] DEBUG Already up to date. 2024-10-24 13:10:53,222 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head' 2024-10-24 13:10:53,519 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2024-10-24 13:10:53,519 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD 2024-10-24 13:10:53,522 [ scc.git] DEBUG ## Unique users: [] 2024-10-24 13:10:53,522 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:10:53,522 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:10:53,527 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45ee35acc44a7d119aa20b38b0427efbe5405322' 2024-10-24 13:10:53,532 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:10:53,536 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (mapr extension of webclient) 45ee35acc44a7d119aa20b38b0427efbe5405322' 2024-10-24 13:10:53,545 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-10-24 13:10:53,548 [ scc.git] DEBUG .../templates/webclient/base/base_container.html | 182 +++++++++++++ 2024-10-24 13:10:53,548 [ scc.git] DEBUG .../data/includes/right_plugin.general.js.html | 290 --------------------- 2024-10-24 13:10:53,548 [ scc.git] DEBUG requirements.txt | 2 +- 2024-10-24 13:10:53,548 [ scc.git] DEBUG 3 files changed, 183 insertions(+), 291 deletions(-) 2024-10-24 13:10:53,548 [ scc.git] DEBUG create mode 100644 omero_mapr/templates/webclient/base/base_container.html 2024-10-24 13:10:53,548 [ scc.git] DEBUG delete mode 100644 omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html 2024-10-24 13:10:53,683 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:10:53,684 [ scc.git] DEBUG Calling 'git submodule update' 2024-10-24 13:10:53,719 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:10:53,719 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:10:53,723 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-10-24 13:10:53,757 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-10-24 13:10:53,763 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7b8cfc5370> has no local changes 2024-10-24 13:10:53,763 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-mapr Excluded PRs: - PR 87 will-moore 'Tests dont use omero utils' (status: failure) - PR 86 will-moore 'fix return of default favicon if not found' (status: failure) - PR 79 will-moore 'Right panel title' (exclude comment) Already up to date. Merged PRs: - PR 74 will-moore 'mapr extension of webclient' Generated by OMERO-plugins-push#222 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/222/)' 2024-10-24 13:10:53,770 [ scc.git] DEBUG [detached HEAD 6546327] merge master -Dorg -Ssuccess-only 2024-10-24 13:10:53,771 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:10:53,771 [ scc.repo] DEBUG ## PRs found: 2024-10-24 13:10:54,283 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None 2024-10-24 13:10:54,742 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/86 HTTP/1.1" 200 None 2024-10-24 13:10:55,255 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/86/comments HTTP/1.1" 200 None 2024-10-24 13:10:55,748 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/d222577494040c63f4ce3c1a266d43257c9f1c61 HTTP/1.1" 200 None 2024-10-24 13:10:56,235 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/d222577494040c63f4ce3c1a266d43257c9f1c61/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-10-24 13:10:56,765 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/d222577494040c63f4ce3c1a266d43257c9f1c61 HTTP/1.1" 200 None 2024-10-24 13:10:57,167 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/d222577494040c63f4ce3c1a266d43257c9f1c61?per_page=1 HTTP/1.1" 200 2 2024-10-24 13:10:57,168 [ scc.repo] DEBUG - PR 86 dominikl 'Add tablename option' 2024-10-24 13:10:57,620 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None 2024-10-24 13:10:58,181 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None 2024-10-24 13:10:58,730 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None 2024-10-24 13:10:59,146 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-10-24 13:10:59,688 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None 2024-10-24 13:11:00,092 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2 2024-10-24 13:11:00,093 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate' 2024-10-24 13:11:00,535 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None 2024-10-24 13:11:00,996 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None 2024-10-24 13:11:01,489 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None 2024-10-24 13:11:01,903 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-10-24 13:11:02,407 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None 2024-10-24 13:11:02,818 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2 2024-10-24 13:11:02,818 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names' 2024-10-24 13:11:02,818 [ scc.repo] DEBUG ## Branches found: 2024-10-24 13:11:02,818 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata 2024-10-24 13:11:02,818 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:11:02,819 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:02,824 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-10-24 13:11:02,828 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-10-24 13:11:02,828 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-10-24 13:11:02,833 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-10-24 13:11:02,838 [ scc.git] DEBUG Already up to date. 2024-10-24 13:11:02,838 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head' 2024-10-24 13:11:03,500 [ scc.git] DEBUG From https://github.com/ome/omero-metadata 2024-10-24 13:11:03,500 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD 2024-10-24 13:11:03,503 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head' 2024-10-24 13:11:04,120 [ scc.git] DEBUG From https://github.com/ome/omero-metadata 2024-10-24 13:11:04,120 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD 2024-10-24 13:11:04,124 [ scc.git] DEBUG Calling 'git fetch origin pull/86/head' 2024-10-24 13:11:04,419 [ scc.git] DEBUG From https://github.com/ome/omero-metadata 2024-10-24 13:11:04,420 [ scc.git] DEBUG * branch refs/pull/86/head -> FETCH_HEAD 2024-10-24 13:11:04,424 [ scc.git] DEBUG ## Unique users: [] 2024-10-24 13:11:04,424 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:11:04,424 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:04,429 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102' 2024-10-24 13:11:04,435 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:04,440 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102' 2024-10-24 13:11:04,468 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py 2024-10-24 13:11:04,468 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py 2024-10-24 13:11:04,468 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py 2024-10-24 13:11:04,468 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py 2024-10-24 13:11:04,468 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2024-10-24 13:11:04,468 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2024-10-24 13:11:04,473 [ scc.git] DEBUG Calling 'git reset --hard e2fc5ec5aeb38953ac2a12cb7c980aeee5bf306c' 2024-10-24 13:11:04,479 [ scc.git] DEBUG HEAD is now at e2fc5ec Merge pull request #85 from sbesson/pytest_logging 2024-10-24 13:11:04,610 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:11:04,610 [ scc.git] DEBUG Calling 'git merge-base e2fc5ec5aeb38953ac2a12cb7c980aeee5bf306c 14f0448a90ccd781126a5c9dc267f4d0a6939102' 2024-10-24 13:11:04,616 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..e2fc5ec5aeb38953ac2a12cb7c980aeee5bf306c' 2024-10-24 13:11:04,621 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names' Conflicting PR. Removed from build [OMERO-plugins-push#222](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/222/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/222/consoleText) for more details. Possible conflicts: - Upstream changes - src/omero_metadata/populate.py - src/omero_metadata/cli.py --conflicts 2024-10-24 13:11:04,626 [ scc.config] DEBUG Found github.token 2024-10-24 13:11:04,626 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts. 2024-10-24 13:11:04,626 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7' 2024-10-24 13:11:04,632 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:04,637 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7' 2024-10-24 13:11:04,664 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py 2024-10-24 13:11:04,664 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py 2024-10-24 13:11:04,664 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py 2024-10-24 13:11:04,664 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2024-10-24 13:11:04,664 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2024-10-24 13:11:04,670 [ scc.git] DEBUG Calling 'git reset --hard e2fc5ec5aeb38953ac2a12cb7c980aeee5bf306c' 2024-10-24 13:11:04,677 [ scc.git] DEBUG HEAD is now at e2fc5ec Merge pull request #85 from sbesson/pytest_logging 2024-10-24 13:11:04,992 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:11:04,993 [ scc.git] DEBUG Calling 'git merge-base e2fc5ec5aeb38953ac2a12cb7c980aeee5bf306c 78e55539b68e351ed5ef202854718b49a37729a7' 2024-10-24 13:11:04,999 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..e2fc5ec5aeb38953ac2a12cb7c980aeee5bf306c' 2024-10-24 13:11:05,005 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate' Conflicting PR. Removed from build [OMERO-plugins-push#222](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/222/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/222/consoleText) for more details. Possible conflicts: - PR #55 kkoz 'Prevent users from creating columns with python keyword names' - src/omero_metadata/populate.py - Upstream changes - src/omero_metadata/populate.py --conflicts 2024-10-24 13:11:05,010 [ scc.config] DEBUG Found github.token 2024-10-24 13:11:05,010 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts. 2024-10-24 13:11:05,010 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d222577494040c63f4ce3c1a266d43257c9f1c61' 2024-10-24 13:11:05,015 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:05,019 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 86 (Add tablename option) d222577494040c63f4ce3c1a266d43257c9f1c61' 2024-10-24 13:11:05,030 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-10-24 13:11:05,032 [ scc.git] DEBUG src/omero_metadata/cli.py | 10 ++++++++-- 2024-10-24 13:11:05,032 [ scc.git] DEBUG 1 file changed, 8 insertions(+), 2 deletions(-) 2024-10-24 13:11:05,376 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:11:05,377 [ scc.git] DEBUG Calling 'git submodule update' 2024-10-24 13:11:05,412 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:11:05,412 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:05,416 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-10-24 13:11:05,450 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-10-24 13:11:05,456 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7b8cfa7a60> has no local changes 2024-10-24 13:11:05,456 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-metadata Already up to date. Merged PRs: - PR 86 dominikl 'Add tablename option' Conflicting PRs (not included): - PR 55 kkoz 'Prevent users from creating columns with python keyword names' - PR 64 will-moore 'Support images_by_name for Screen and Plate' Generated by OMERO-plugins-push#222 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/222/)' 2024-10-24 13:11:05,463 [ scc.git] DEBUG [detached HEAD 1985b82] merge master -Dorg -Ssuccess-only 2024-10-24 13:11:05,464 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:11:05,464 [ scc.repo] DEBUG ## PRs found: 2024-10-24 13:11:05,968 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None 2024-10-24 13:11:06,426 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/131 HTTP/1.1" 200 None 2024-10-24 13:11:06,427 [ scc.repo] DEBUG # ... Include label: dependencies 2024-10-24 13:11:07,023 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/a7d2dc0dc9098294c014cb634e1226fea404721f HTTP/1.1" 200 None 2024-10-24 13:11:07,537 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/a7d2dc0dc9098294c014cb634e1226fea404721f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-10-24 13:11:08,076 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/a7d2dc0dc9098294c014cb634e1226fea404721f/check-suites?app_id=15368 HTTP/1.1" 200 None 2024-10-24 13:11:08,499 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/a7d2dc0dc9098294c014cb634e1226fea404721f HTTP/1.1" 200 None 2024-10-24 13:11:08,899 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/a7d2dc0dc9098294c014cb634e1226fea404721f?per_page=1 HTTP/1.1" 200 2 2024-10-24 13:11:08,899 [ scc.repo] DEBUG - PR 131 dependabot[bot] 'Bump axios from 1.3.5 to 1.6.0' 2024-10-24 13:11:09,339 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/129 HTTP/1.1" 200 None 2024-10-24 13:11:09,340 [ scc.repo] DEBUG # ... Include label: dependencies 2024-10-24 13:11:09,950 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/733f52703019d4b6d7e375c121a25c107b64dbec HTTP/1.1" 200 None 2024-10-24 13:11:10,458 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/733f52703019d4b6d7e375c121a25c107b64dbec/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-10-24 13:11:10,907 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/733f52703019d4b6d7e375c121a25c107b64dbec/check-suites?app_id=15368 HTTP/1.1" 200 None 2024-10-24 13:11:11,355 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/733f52703019d4b6d7e375c121a25c107b64dbec HTTP/1.1" 200 None 2024-10-24 13:11:11,745 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/733f52703019d4b6d7e375c121a25c107b64dbec?per_page=1 HTTP/1.1" 200 2 2024-10-24 13:11:11,746 [ scc.repo] DEBUG - PR 129 dependabot[bot] 'Bump @babel/traverse from 7.21.4 to 7.23.2' 2024-10-24 13:11:12,197 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/128 HTTP/1.1" 200 None 2024-10-24 13:11:12,198 [ scc.repo] DEBUG # ... Include label: dependencies 2024-10-24 13:11:12,763 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/55ca13b67cc0254ed6e1a340952b8741cc54d680 HTTP/1.1" 200 None 2024-10-24 13:11:13,306 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/55ca13b67cc0254ed6e1a340952b8741cc54d680/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-10-24 13:11:13,758 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/55ca13b67cc0254ed6e1a340952b8741cc54d680/check-suites?app_id=15368 HTTP/1.1" 200 None 2024-10-24 13:11:14,323 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/55ca13b67cc0254ed6e1a340952b8741cc54d680 HTTP/1.1" 200 None 2024-10-24 13:11:14,726 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/55ca13b67cc0254ed6e1a340952b8741cc54d680?per_page=1 HTTP/1.1" 200 2 2024-10-24 13:11:14,726 [ scc.repo] DEBUG - PR 128 dependabot[bot] 'Bump postcss from 8.4.21 to 8.4.31' 2024-10-24 13:11:15,216 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None 2024-10-24 13:11:15,707 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None 2024-10-24 13:11:16,214 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None 2024-10-24 13:11:16,707 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None 2024-10-24 13:11:17,153 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None 2024-10-24 13:11:17,704 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None 2024-10-24 13:11:17,706 [ scc.repo] DEBUG ## Branches found: 2024-10-24 13:11:17,706 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade 2024-10-24 13:11:17,706 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:11:17,706 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:17,711 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-10-24 13:11:17,716 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-10-24 13:11:17,716 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-10-24 13:11:17,721 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-10-24 13:11:17,725 [ scc.git] DEBUG Already up to date. 2024-10-24 13:11:17,726 [ scc.git] DEBUG Calling 'git fetch origin pull/128/head' 2024-10-24 13:11:18,045 [ scc.git] DEBUG From https://github.com/ome/omero-parade 2024-10-24 13:11:18,045 [ scc.git] DEBUG * branch refs/pull/128/head -> FETCH_HEAD 2024-10-24 13:11:18,049 [ scc.git] DEBUG Calling 'git fetch origin pull/129/head' 2024-10-24 13:11:18,353 [ scc.git] DEBUG From https://github.com/ome/omero-parade 2024-10-24 13:11:18,353 [ scc.git] DEBUG * branch refs/pull/129/head -> FETCH_HEAD 2024-10-24 13:11:18,357 [ scc.git] DEBUG Calling 'git fetch origin pull/131/head' 2024-10-24 13:11:18,629 [ scc.git] DEBUG From https://github.com/ome/omero-parade 2024-10-24 13:11:18,629 [ scc.git] DEBUG * branch refs/pull/131/head -> FETCH_HEAD 2024-10-24 13:11:18,633 [ scc.git] DEBUG ## Unique users: [] 2024-10-24 13:11:18,633 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:11:18,633 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:18,637 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...55ca13b67cc0254ed6e1a340952b8741cc54d680' 2024-10-24 13:11:18,642 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:18,646 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 128 (Bump postcss from 8.4.21 to 8.4.31) 55ca13b67cc0254ed6e1a340952b8741cc54d680' 2024-10-24 13:11:18,655 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-10-24 13:11:18,657 [ scc.git] DEBUG package-lock.json | 12 ++++++++---- 2024-10-24 13:11:18,657 [ scc.git] DEBUG 1 file changed, 8 insertions(+), 4 deletions(-) 2024-10-24 13:11:18,808 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:11:18,809 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...733f52703019d4b6d7e375c121a25c107b64dbec' 2024-10-24 13:11:18,815 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:18,819 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 129 (Bump @babel/traverse from 7.21.4 to 7.23.2) 733f52703019d4b6d7e375c121a25c107b64dbec' 2024-10-24 13:11:18,847 [ scc.git] DEBUG Auto-merging package-lock.json 2024-10-24 13:11:18,847 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-10-24 13:11:18,850 [ scc.git] DEBUG package-lock.json | 121 +++++++++++++++++++++++++++--------------------------- 2024-10-24 13:11:18,850 [ scc.git] DEBUG 1 file changed, 61 insertions(+), 60 deletions(-) 2024-10-24 13:11:19,189 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:11:19,189 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...a7d2dc0dc9098294c014cb634e1226fea404721f' 2024-10-24 13:11:19,195 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:19,199 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 131 (Bump axios from 1.3.5 to 1.6.0) a7d2dc0dc9098294c014cb634e1226fea404721f' 2024-10-24 13:11:19,214 [ scc.git] DEBUG Auto-merging package-lock.json 2024-10-24 13:11:19,214 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-10-24 13:11:19,217 [ scc.git] DEBUG package-lock.json | 8 ++++---- 2024-10-24 13:11:19,217 [ scc.git] DEBUG package.json | 2 +- 2024-10-24 13:11:19,217 [ scc.git] DEBUG 2 files changed, 5 insertions(+), 5 deletions(-) 2024-10-24 13:11:19,568 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:11:19,569 [ scc.git] DEBUG Calling 'git submodule update' 2024-10-24 13:11:19,606 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:11:19,606 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:19,611 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-10-24 13:11:19,645 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-10-24 13:11:19,651 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7b8cfd0be0> has no local changes 2024-10-24 13:11:19,651 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-parade Excluded PRs: - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment) - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment) - PR 39 chris-allan 'Expand all for Screens' (exclude comment) Already up to date. Merged PRs: - PR 128 dependabot[bot] 'Bump postcss from 8.4.21 to 8.4.31' - PR 129 dependabot[bot] 'Bump @babel/traverse from 7.21.4 to 7.23.2' - PR 131 dependabot[bot] 'Bump axios from 1.3.5 to 1.6.0' Generated by OMERO-plugins-push#222 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/222/)' 2024-10-24 13:11:19,659 [ scc.git] DEBUG [detached HEAD 6b794c7] merge master -Dorg -Ssuccess-only 2024-10-24 13:11:19,659 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:11:19,659 [ scc.repo] DEBUG ## PRs found: 2024-10-24 13:11:20,074 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None 2024-10-24 13:11:20,526 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/14 HTTP/1.1" 200 None 2024-10-24 13:11:21,083 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/fb7700b8eb4b753884260b7921e65b58b29f954e HTTP/1.1" 200 None 2024-10-24 13:11:21,574 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/fb7700b8eb4b753884260b7921e65b58b29f954e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-10-24 13:11:22,109 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/fb7700b8eb4b753884260b7921e65b58b29f954e HTTP/1.1" 200 None 2024-10-24 13:11:22,494 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/fb7700b8eb4b753884260b7921e65b58b29f954e?per_page=1 HTTP/1.1" 200 2 2024-10-24 13:11:22,495 [ scc.repo] DEBUG - PR 14 jburel 'use conda-forge channel' 2024-10-24 13:11:22,495 [ scc.repo] DEBUG ## Branches found: 2024-10-24 13:11:22,495 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools 2024-10-24 13:11:22,495 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:11:22,495 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:22,499 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-10-24 13:11:22,504 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-10-24 13:11:22,504 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-10-24 13:11:22,509 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-10-24 13:11:22,514 [ scc.git] DEBUG Already up to date. 2024-10-24 13:11:22,514 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head' 2024-10-24 13:11:22,829 [ scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools 2024-10-24 13:11:22,829 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD 2024-10-24 13:11:22,833 [ scc.git] DEBUG ## Unique users: [] 2024-10-24 13:11:22,833 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:11:22,833 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:22,837 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...fb7700b8eb4b753884260b7921e65b58b29f954e' 2024-10-24 13:11:22,842 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:22,847 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (use conda-forge channel) fb7700b8eb4b753884260b7921e65b58b29f954e' 2024-10-24 13:11:22,855 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-10-24 13:11:23,004 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:11:23,004 [ scc.git] DEBUG Calling 'git submodule update' 2024-10-24 13:11:23,039 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:11:23,039 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:23,044 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-10-24 13:11:23,078 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-10-24 13:11:23,083 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7b8c793fa0> has no local changes 2024-10-24 13:11:23,084 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-prometheus-tools Already up to date. Merged PRs: - PR 14 jburel 'use conda-forge channel' Generated by OMERO-plugins-push#222 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/222/)' 2024-10-24 13:11:23,091 [ scc.git] DEBUG [detached HEAD c62de2d] merge master -Dorg -Ssuccess-only 2024-10-24 13:11:23,091 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:11:23,091 [ scc.repo] DEBUG ## PRs found: 2024-10-24 13:11:23,528 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None 2024-10-24 13:11:24,013 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/28 HTTP/1.1" 200 None 2024-10-24 13:11:24,490 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/6 HTTP/1.1" 200 None 2024-10-24 13:11:24,928 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/6/comments HTTP/1.1" 200 None 2024-10-24 13:11:25,461 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/20757563a49aa42b99a0c43176f6ef747e965b61 HTTP/1.1" 200 None 2024-10-24 13:11:25,947 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/20757563a49aa42b99a0c43176f6ef747e965b61/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-10-24 13:11:26,432 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/20757563a49aa42b99a0c43176f6ef747e965b61 HTTP/1.1" 200 None 2024-10-24 13:11:26,823 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/20757563a49aa42b99a0c43176f6ef747e965b61?per_page=1 HTTP/1.1" 200 2 2024-10-24 13:11:26,824 [ scc.repo] DEBUG - PR 6 dominikl 'Add method to create masks grouped by label id' 2024-10-24 13:11:26,824 [ scc.repo] DEBUG ## Branches found: 2024-10-24 13:11:26,824 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois 2024-10-24 13:11:26,824 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:11:26,824 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:26,829 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-10-24 13:11:26,833 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-10-24 13:11:26,834 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-10-24 13:11:26,838 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-10-24 13:11:26,843 [ scc.git] DEBUG Already up to date. 2024-10-24 13:11:26,844 [ scc.git] DEBUG Calling 'git fetch origin pull/6/head' 2024-10-24 13:11:27,276 [ scc.git] DEBUG From https://github.com/ome/omero-rois 2024-10-24 13:11:27,276 [ scc.git] DEBUG * branch refs/pull/6/head -> FETCH_HEAD 2024-10-24 13:11:27,280 [ scc.git] DEBUG ## Unique users: [] 2024-10-24 13:11:27,280 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:11:27,280 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:27,284 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...20757563a49aa42b99a0c43176f6ef747e965b61' 2024-10-24 13:11:27,289 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:27,294 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 6 (Add method to create masks grouped by label id) 20757563a49aa42b99a0c43176f6ef747e965b61' 2024-10-24 13:11:27,303 [ scc.git] DEBUG Auto-merging src/omero_rois/library.py 2024-10-24 13:11:27,303 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-10-24 13:11:27,305 [ scc.git] DEBUG src/omero_rois/library.py | 33 +++++++++++++++++++++++++++++++++ 2024-10-24 13:11:27,306 [ scc.git] DEBUG 1 file changed, 33 insertions(+) 2024-10-24 13:11:27,449 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:11:27,450 [ scc.git] DEBUG Calling 'git submodule update' 2024-10-24 13:11:27,484 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:11:27,484 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:27,489 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-10-24 13:11:27,523 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-10-24 13:11:27,528 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7b8c761e80> has no local changes 2024-10-24 13:11:27,528 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-rois Excluded PRs: - PR 28 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) Already up to date. Merged PRs: - PR 6 dominikl 'Add method to create masks grouped by label id' Generated by OMERO-plugins-push#222 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/222/)' 2024-10-24 13:11:27,535 [ scc.git] DEBUG [detached HEAD e70bd6e] merge master -Dorg -Ssuccess-only 2024-10-24 13:11:27,536 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:11:27,536 [ scc.repo] DEBUG ## PRs found: 2024-10-24 13:11:27,949 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None 2024-10-24 13:11:28,414 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None 2024-10-24 13:11:28,848 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None 2024-10-24 13:11:29,423 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None 2024-10-24 13:11:29,912 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-10-24 13:11:30,465 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None 2024-10-24 13:11:30,864 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2 2024-10-24 13:11:30,865 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)' 2024-10-24 13:11:30,865 [ scc.repo] DEBUG ## Branches found: 2024-10-24 13:11:30,865 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup 2024-10-24 13:11:30,865 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:11:30,865 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:30,870 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-10-24 13:11:30,874 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-10-24 13:11:30,875 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-10-24 13:11:30,879 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-10-24 13:11:30,884 [ scc.git] DEBUG Already up to date. 2024-10-24 13:11:30,885 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head' 2024-10-24 13:11:31,490 [ scc.git] DEBUG From https://github.com/ome/omero-signup 2024-10-24 13:11:31,491 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD 2024-10-24 13:11:31,494 [ scc.git] DEBUG ## Unique users: [] 2024-10-24 13:11:31,494 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:11:31,494 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:31,499 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d' 2024-10-24 13:11:31,504 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:31,508 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d' 2024-10-24 13:11:31,619 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py 2024-10-24 13:11:31,620 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py 2024-10-24 13:11:31,620 [ scc.git] DEBUG Auto-merging omero_signup/urls.py 2024-10-24 13:11:31,620 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py 2024-10-24 13:11:31,620 [ scc.git] DEBUG Auto-merging omero_signup/views.py 2024-10-24 13:11:31,620 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py 2024-10-24 13:11:31,620 [ scc.git] DEBUG Auto-merging setup.py 2024-10-24 13:11:31,620 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py 2024-10-24 13:11:31,620 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2024-10-24 13:11:31,620 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2024-10-24 13:11:31,625 [ scc.git] DEBUG Calling 'git reset --hard c8610dba25f39870a09fa5401c735fb3be85a319' 2024-10-24 13:11:31,630 [ scc.git] DEBUG HEAD is now at c8610db Bump version: 0.3.3 → 0.3.4.dev0 2024-10-24 13:11:31,769 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:11:31,770 [ scc.git] DEBUG Calling 'git merge-base c8610dba25f39870a09fa5401c735fb3be85a319 b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d' 2024-10-24 13:11:31,775 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..c8610dba25f39870a09fa5401c735fb3be85a319' 2024-10-24 13:11:31,780 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)' Conflicting PR. Removed from build [OMERO-plugins-push#222](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/222/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/222/consoleText) for more details. Possible conflicts: - Upstream changes - omero_signup/signup_settings.py - omero_signup/urls.py - omero_signup/views.py - setup.py --conflicts 2024-10-24 13:11:31,784 [ scc.config] DEBUG Found github.token 2024-10-24 13:11:31,785 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts. 2024-10-24 13:11:31,785 [ scc.git] DEBUG Calling 'git submodule update' 2024-10-24 13:11:31,820 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:11:31,820 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:31,824 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-10-24 13:11:31,858 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-10-24 13:11:31,863 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7b8c788fd0> has no local changes 2024-10-24 13:11:31,863 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-signup Already up to date. Conflicting PRs (not included): - PR 14 manics 'Add pre-commit (black, flake8)' Generated by OMERO-plugins-push#222 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/222/)' 2024-10-24 13:11:31,871 [ scc.git] DEBUG [detached HEAD e72a6a6] merge master -Dorg -Ssuccess-only 2024-10-24 13:11:31,871 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:11:31,871 [ scc.repo] DEBUG ## PRs found: 2024-10-24 13:11:32,386 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None 2024-10-24 13:11:32,864 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12 HTTP/1.1" 200 None 2024-10-24 13:11:33,309 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12/comments HTTP/1.1" 200 None 2024-10-24 13:11:33,833 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None 2024-10-24 13:11:34,356 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-10-24 13:11:34,845 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None 2024-10-24 13:11:35,244 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/425319051224e8481afc40083fd9b5db4bc99928?per_page=1 HTTP/1.1" 200 2 2024-10-24 13:11:35,245 [ scc.repo] DEBUG - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra' 2024-10-24 13:11:35,245 [ scc.repo] DEBUG ## Branches found: 2024-10-24 13:11:35,245 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra 2024-10-24 13:11:35,245 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:11:35,245 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:35,250 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-10-24 13:11:35,254 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-10-24 13:11:35,255 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-10-24 13:11:35,259 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-10-24 13:11:35,264 [ scc.git] DEBUG Already up to date. 2024-10-24 13:11:35,265 [ scc.git] DEBUG Calling 'git fetch origin pull/12/head' 2024-10-24 13:11:35,727 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra 2024-10-24 13:11:35,727 [ scc.git] DEBUG * branch refs/pull/12/head -> FETCH_HEAD 2024-10-24 13:11:35,730 [ scc.git] DEBUG ## Unique users: [] 2024-10-24 13:11:35,730 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:11:35,730 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:35,735 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...425319051224e8481afc40083fd9b5db4bc99928' 2024-10-24 13:11:35,741 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:35,745 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 12 (IDR: use downloaded ansible templates & variables to configure infra) 425319051224e8481afc40083fd9b5db4bc99928' 2024-10-24 13:11:35,763 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-10-24 13:11:35,765 [ scc.git] DEBUG idr-compose.yml | 66 ++++++++++++++ 2024-10-24 13:11:35,765 [ scc.git] DEBUG idr-haproxy.yml | 58 +++++++++++++ 2024-10-24 13:11:35,765 [ scc.git] DEBUG idr/40-ansible.sh | 7 ++ 2024-10-24 13:11:35,765 [ scc.git] DEBUG idr/70-reset-password.sh | 1 + 2024-10-24 13:11:35,765 [ scc.git] DEBUG idr/nginx/conf.d/default.conf | 1 + 2024-10-24 13:11:35,765 [ scc.git] DEBUG idr/nginx/conf.d/example_ssl.conf | 1 + 2024-10-24 13:11:35,767 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cache.conf | 53 +++++++++++ 2024-10-24 13:11:35,767 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cachebuster.conf | 114 ++++++++++++++++++++++++ 2024-10-24 13:11:35,767 [ scc.git] DEBUG idr/nginx/conf.d/proxy-default.conf | 135 +++++++++++++++++++++++++++++ 2024-10-24 13:11:35,767 [ scc.git] DEBUG idr/nginx/conf.d/proxy-omeroreadwrite.conf | 115 ++++++++++++++++++++++++ 2024-10-24 13:11:35,767 [ scc.git] DEBUG idr/nginx/conf.d/proxy-redirect.conf | 15 ++++ 2024-10-24 13:11:35,767 [ scc.git] DEBUG idr/nginx/conf.d/proxy-upstream.conf | 13 +++ 2024-10-24 13:11:35,767 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v0.conf | 26 ++++++ 2024-10-24 13:11:35,767 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v1.conf | 30 +++++++ 2024-10-24 13:11:35,767 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v2.conf | 30 +++++++ 2024-10-24 13:11:35,768 [ scc.git] DEBUG idr/nginx/conf.d/proxy-websockets.conf | 6 ++ 2024-10-24 13:11:35,768 [ scc.git] DEBUG idr/nginx/nginx.conf | 53 +++++++++++ 2024-10-24 13:11:35,768 [ scc.git] DEBUG idr/omero/Dockerfile | 3 + 2024-10-24 13:11:35,768 [ scc.git] DEBUG idr/omero/playbook.yml | 41 +++++++++ 2024-10-24 13:11:35,768 [ scc.git] DEBUG idr/redirect/Dockerfile | 6 ++ 2024-10-24 13:11:35,768 [ scc.git] DEBUG idr/web/Dockerfile | 5 ++ 2024-10-24 13:11:35,768 [ scc.git] DEBUG idr/web/playbook.yml | 45 ++++++++++ 2024-10-24 13:11:35,768 [ scc.git] DEBUG 22 files changed, 824 insertions(+) 2024-10-24 13:11:35,768 [ scc.git] DEBUG create mode 100644 idr-compose.yml 2024-10-24 13:11:35,768 [ scc.git] DEBUG create mode 100644 idr-haproxy.yml 2024-10-24 13:11:35,768 [ scc.git] DEBUG create mode 100755 idr/40-ansible.sh 2024-10-24 13:11:35,768 [ scc.git] DEBUG create mode 100755 idr/70-reset-password.sh 2024-10-24 13:11:35,768 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/default.conf 2024-10-24 13:11:35,768 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/example_ssl.conf 2024-10-24 13:11:35,768 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cache.conf 2024-10-24 13:11:35,768 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cachebuster.conf 2024-10-24 13:11:35,768 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-default.conf 2024-10-24 13:11:35,768 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-omeroreadwrite.conf 2024-10-24 13:11:35,768 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-redirect.conf 2024-10-24 13:11:35,768 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-upstream.conf 2024-10-24 13:11:35,768 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v0.conf 2024-10-24 13:11:35,768 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v1.conf 2024-10-24 13:11:35,768 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v2.conf 2024-10-24 13:11:35,768 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-websockets.conf 2024-10-24 13:11:35,768 [ scc.git] DEBUG create mode 100644 idr/nginx/nginx.conf 2024-10-24 13:11:35,768 [ scc.git] DEBUG create mode 100644 idr/omero/Dockerfile 2024-10-24 13:11:35,768 [ scc.git] DEBUG create mode 100644 idr/omero/playbook.yml 2024-10-24 13:11:35,768 [ scc.git] DEBUG create mode 100644 idr/redirect/Dockerfile 2024-10-24 13:11:35,768 [ scc.git] DEBUG create mode 100644 idr/web/Dockerfile 2024-10-24 13:11:35,768 [ scc.git] DEBUG create mode 100644 idr/web/playbook.yml 2024-10-24 13:11:35,908 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:11:35,909 [ scc.git] DEBUG Calling 'git submodule update' 2024-10-24 13:11:35,944 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:11:35,944 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:35,949 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-10-24 13:11:35,982 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-10-24 13:11:35,988 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7b8c7935b0> has no local changes 2024-10-24 13:11:35,989 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: openmicroscopy/omero-test-infra Already up to date. Merged PRs: - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra' Generated by OMERO-plugins-push#222 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/222/)' 2024-10-24 13:11:35,997 [ scc.git] DEBUG [detached HEAD 86c8d52] merge master -Dorg -Ssuccess-only 2024-10-24 13:11:35,997 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:11:35,997 [ scc.repo] DEBUG ## PRs found: 2024-10-24 13:11:36,322 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 2 2024-10-24 13:11:36,322 [ scc.repo] DEBUG ## Branches found: 2024-10-24 13:11:36,322 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload 2024-10-24 13:11:36,322 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:11:36,322 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:36,327 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-10-24 13:11:36,331 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-10-24 13:11:36,331 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-10-24 13:11:36,336 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-10-24 13:11:36,341 [ scc.git] DEBUG Already up to date. 2024-10-24 13:11:36,341 [ scc.git] DEBUG ## Unique users: [] 2024-10-24 13:11:36,341 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:11:36,341 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:36,345 [ scc.git] DEBUG Calling 'git submodule update' 2024-10-24 13:11:36,380 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:11:36,380 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:36,384 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-10-24 13:11:36,419 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-10-24 13:11:36,424 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7b8c74f2e0> has no local changes 2024-10-24 13:11:36,425 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-upload Already up to date. Generated by OMERO-plugins-push#222 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/222/)' 2024-10-24 13:11:36,432 [ scc.git] DEBUG [detached HEAD 2acfc72] merge master -Dorg -Ssuccess-only 2024-10-24 13:11:36,432 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:11:36,432 [ scc.repo] DEBUG ## PRs found: 2024-10-24 13:11:36,805 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 2 2024-10-24 13:11:36,805 [ scc.repo] DEBUG ## Branches found: 2024-10-24 13:11:36,805 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope 2024-10-24 13:11:36,805 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:11:36,806 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:36,810 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-10-24 13:11:36,814 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-10-24 13:11:36,814 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-10-24 13:11:36,819 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-10-24 13:11:36,824 [ scc.git] DEBUG Already up to date. 2024-10-24 13:11:36,824 [ scc.git] DEBUG ## Unique users: [] 2024-10-24 13:11:36,824 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:11:36,824 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:36,828 [ scc.git] DEBUG Calling 'git submodule update' 2024-10-24 13:11:36,863 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:11:36,863 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:36,867 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-10-24 13:11:36,901 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-10-24 13:11:36,906 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7b8c6f9a00> has no local changes 2024-10-24 13:11:36,906 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-virtual-microscope Already up to date. Generated by OMERO-plugins-push#222 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/222/)' 2024-10-24 13:11:36,914 [ scc.git] DEBUG [detached HEAD 90e8ba0] merge master -Dorg -Ssuccess-only 2024-10-24 13:11:36,914 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:11:36,914 [ scc.git] INFO Overriding base-branch from master to main 2024-10-24 13:11:36,914 [ scc.repo] DEBUG ## PRs found: 2024-10-24 13:11:37,357 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None 2024-10-24 13:11:37,802 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None 2024-10-24 13:11:38,248 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None 2024-10-24 13:11:38,710 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None 2024-10-24 13:11:39,215 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None 2024-10-24 13:11:39,627 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-10-24 13:11:40,142 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None 2024-10-24 13:11:40,548 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2 2024-10-24 13:11:40,548 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' 2024-10-24 13:11:40,548 [ scc.repo] DEBUG ## Branches found: 2024-10-24 13:11:40,549 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr 2024-10-24 13:11:40,549 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:11:40,549 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:40,554 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main' 2024-10-24 13:11:40,558 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-10-24 13:11:40,558 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main' 2024-10-24 13:11:40,563 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main' 2024-10-24 13:11:40,568 [ scc.git] DEBUG Already up to date. 2024-10-24 13:11:40,568 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head' 2024-10-24 13:11:40,993 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr 2024-10-24 13:11:40,993 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD 2024-10-24 13:11:40,997 [ scc.git] DEBUG ## Unique users: [] 2024-10-24 13:11:40,997 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:11:40,997 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:41,002 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8' 2024-10-24 13:11:41,007 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:41,011 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8' 2024-10-24 13:11:41,019 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py 2024-10-24 13:11:41,019 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py 2024-10-24 13:11:41,020 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2024-10-24 13:11:41,020 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2024-10-24 13:11:41,025 [ scc.git] DEBUG Calling 'git reset --hard 67bb245b8b08709e04a8bf52b02de2298a029a94' 2024-10-24 13:11:41,030 [ scc.git] DEBUG HEAD is now at 67bb245 Bump version: 0.1.1 → 0.1.2.dev0 2024-10-24 13:11:41,167 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:11:41,168 [ scc.git] DEBUG Calling 'git merge-base 67bb245b8b08709e04a8bf52b02de2298a029a94 85cf4c893f393da6763bf4cee2a308832a41a9e8' 2024-10-24 13:11:41,173 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..67bb245b8b08709e04a8bf52b02de2298a029a94' 2024-10-24 13:11:41,177 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' Conflicting PR. Removed from build [OMERO-plugins-push#222](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/222/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/222/consoleText) for more details. Possible conflicts: - Upstream changes - omero_web_zarr/urls.py --conflicts 2024-10-24 13:11:41,181 [ scc.config] DEBUG Found github.token 2024-10-24 13:11:41,182 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts. 2024-10-24 13:11:41,182 [ scc.git] DEBUG Calling 'git submodule update' 2024-10-24 13:11:41,216 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:11:41,217 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:41,221 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-10-24 13:11:41,255 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-10-24 13:11:41,260 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7b8c73aeb0> has no local changes 2024-10-24 13:11:41,261 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-web-zarr Excluded PRs: - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft) Already up to date. Conflicting PRs (not included): - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' Generated by OMERO-plugins-push#222 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/222/)' 2024-10-24 13:11:41,268 [ scc.git] DEBUG [detached HEAD f2bc95b] merge master -Dorg -Ssuccess-only 2024-10-24 13:11:41,268 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:11:41,268 [ scc.repo] DEBUG ## PRs found: 2024-10-24 13:11:41,598 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 2 2024-10-24 13:11:41,599 [ scc.repo] DEBUG ## Branches found: 2024-10-24 13:11:41,599 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror 2024-10-24 13:11:41,599 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:11:41,599 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:41,603 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-10-24 13:11:41,608 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-10-24 13:11:41,608 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-10-24 13:11:41,613 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-10-24 13:11:41,617 [ scc.git] DEBUG Already up to date. 2024-10-24 13:11:41,618 [ scc.git] DEBUG ## Unique users: [] 2024-10-24 13:11:41,618 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:11:41,618 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:41,622 [ scc.git] DEBUG Calling 'git submodule update' 2024-10-24 13:11:41,656 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:11:41,656 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:41,660 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-10-24 13:11:41,694 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-10-24 13:11:41,699 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7b8c6f97c0> has no local changes 2024-10-24 13:11:41,699 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: openmicroscopy/omero-weberror Already up to date. Generated by OMERO-plugins-push#222 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/222/)' 2024-10-24 13:11:41,706 [ scc.git] DEBUG [detached HEAD ec8dfa6] merge master -Dorg -Ssuccess-only 2024-10-24 13:11:41,707 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:11:41,707 [ scc.repo] DEBUG ## PRs found: 2024-10-24 13:11:42,032 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 2 2024-10-24 13:11:42,032 [ scc.repo] DEBUG ## Branches found: 2024-10-24 13:11:42,033 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest 2024-10-24 13:11:42,033 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:11:42,033 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:42,037 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-10-24 13:11:42,041 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-10-24 13:11:42,042 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-10-24 13:11:42,046 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-10-24 13:11:42,051 [ scc.git] DEBUG Already up to date. 2024-10-24 13:11:42,051 [ scc.git] DEBUG ## Unique users: [] 2024-10-24 13:11:42,051 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:11:42,052 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:42,056 [ scc.git] DEBUG Calling 'git submodule update' 2024-10-24 13:11:42,090 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:11:42,090 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:42,094 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-10-24 13:11:42,128 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-10-24 13:11:42,133 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7b8c6dfc10> has no local changes 2024-10-24 13:11:42,134 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: openmicroscopy/omero-webtest Already up to date. Generated by OMERO-plugins-push#222 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/222/)' 2024-10-24 13:11:42,141 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:11:42,142 [ scc.git] DEBUG [detached HEAD 1e3cd3c] merge master -Dorg -Ssuccess-only 2024-10-24 13:11:42,142 [ scc.repo] DEBUG ## PRs found: 2024-10-24 13:11:42,543 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 None 2024-10-24 13:11:42,990 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100 HTTP/1.1" 200 None 2024-10-24 13:11:43,449 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100/comments HTTP/1.1" 200 None 2024-10-24 13:11:43,973 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None 2024-10-24 13:11:44,448 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-10-24 13:11:45,014 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None 2024-10-24 13:11:45,415 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/statuses/b4abacf0cb9b7aee150761d320bdbb80762cd6e7?per_page=1 HTTP/1.1" 200 2 2024-10-24 13:11:45,416 [ scc.repo] DEBUG - PR 100 dominikl 'Run tests properly' 2024-10-24 13:11:45,416 [ scc.repo] DEBUG ## Branches found: 2024-10-24 13:11:45,416 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway 2024-10-24 13:11:45,416 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:11:45,416 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:45,421 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-10-24 13:11:45,426 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-10-24 13:11:45,426 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-10-24 13:11:45,431 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-10-24 13:11:45,436 [ scc.git] DEBUG Already up to date. 2024-10-24 13:11:45,436 [ scc.git] DEBUG Calling 'git fetch origin pull/100/head' 2024-10-24 13:11:45,780 [ scc.git] DEBUG From https://github.com/ome/rOMERO-gateway 2024-10-24 13:11:45,780 [ scc.git] DEBUG * branch refs/pull/100/head -> FETCH_HEAD 2024-10-24 13:11:45,784 [ scc.git] DEBUG ## Unique users: [] 2024-10-24 13:11:45,784 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:11:45,784 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:45,789 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b4abacf0cb9b7aee150761d320bdbb80762cd6e7' 2024-10-24 13:11:45,794 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:45,798 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 100 (Run tests properly) b4abacf0cb9b7aee150761d320bdbb80762cd6e7' 2024-10-24 13:11:45,807 [ scc.git] DEBUG Auto-merging Dockerfile 2024-10-24 13:11:45,808 [ scc.git] DEBUG CONFLICT (content): Merge conflict in Dockerfile 2024-10-24 13:11:45,808 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2024-10-24 13:11:45,808 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2024-10-24 13:11:45,813 [ scc.git] DEBUG Calling 'git reset --hard 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9' 2024-10-24 13:11:45,819 [ scc.git] DEBUG HEAD is now at 7b5d64d Merge pull request #106 from dominikl/add_examples_2 2024-10-24 13:11:45,951 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:11:45,952 [ scc.git] DEBUG Calling 'git merge-base 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 b4abacf0cb9b7aee150761d320bdbb80762cd6e7' 2024-10-24 13:11:45,957 [ scc.git] DEBUG Calling 'git diff --name-only 8b424d2d21f70d07729c4da38a9241b9a9f483be..7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9' 2024-10-24 13:11:45,962 [ scc.git] INFO - PR 100 dominikl 'Run tests properly' Conflicting PR. Removed from build [OMERO-plugins-push#222](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/222/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/222/consoleText) for more details. Possible conflicts: - Upstream changes - Dockerfile --conflicts 2024-10-24 13:11:45,966 [ scc.config] DEBUG Found github.token 2024-10-24 13:11:45,966 [ scc.git] DEBUG Not adding comment to issue #100, already --conflicts. 2024-10-24 13:11:45,966 [ scc.git] DEBUG Calling 'git submodule update' 2024-10-24 13:11:46,001 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:11:46,001 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:46,005 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-10-24 13:11:46,042 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-10-24 13:11:46,048 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7b8c70ffa0> has no local changes 2024-10-24 13:11:46,049 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/rOMERO-gateway Already up to date. Conflicting PRs (not included): - PR 100 dominikl 'Run tests properly' Generated by OMERO-plugins-push#222 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/222/)' 2024-10-24 13:11:46,057 [ scc.git] DEBUG [detached HEAD eb2ec1f] merge master -Dorg -Ssuccess-only 2024-10-24 13:11:46,057 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:11:46,057 [ scc.git] INFO Overriding base-branch from master to develop 2024-10-24 13:11:46,057 [ scc.repo] DEBUG ## PRs found: 2024-10-24 13:11:46,559 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None 2024-10-24 13:11:47,044 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223 HTTP/1.1" 200 None 2024-10-24 13:11:47,488 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223/comments HTTP/1.1" 200 None 2024-10-24 13:11:47,968 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None 2024-10-24 13:11:48,451 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-10-24 13:11:48,910 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368 HTTP/1.1" 200 None 2024-10-24 13:11:49,380 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None 2024-10-24 13:11:49,768 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/d8b2bbd6f5066de883a41ba5338662d60472b0d8?per_page=1 HTTP/1.1" 200 2 2024-10-24 13:11:49,768 [ scc.repo] DEBUG - PR 223 will-moore 'don't attempt ROI stats on big images' 2024-10-24 13:11:50,231 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/216 HTTP/1.1" 200 None 2024-10-24 13:11:50,818 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/216/comments HTTP/1.1" 200 None 2024-10-24 13:11:51,275 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/206 HTTP/1.1" 200 None 2024-10-24 13:11:51,745 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/206/comments HTTP/1.1" 200 None 2024-10-24 13:11:52,194 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202 HTTP/1.1" 200 None 2024-10-24 13:11:52,648 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202/comments HTTP/1.1" 200 None 2024-10-24 13:11:53,083 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None 2024-10-24 13:11:53,566 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-10-24 13:11:54,061 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None 2024-10-24 13:11:54,460 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/1fd6030669613cdb8879cfe6395db8c820fdcf19?per_page=1 HTTP/1.1" 200 2 2024-10-24 13:11:54,461 [ scc.repo] DEBUG - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py' 2024-10-24 13:11:54,925 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None 2024-10-24 13:11:55,408 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None 2024-10-24 13:11:55,872 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103 HTTP/1.1" 200 None 2024-10-24 13:11:56,336 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103/comments HTTP/1.1" 200 None 2024-10-24 13:11:56,338 [ scc.repo] DEBUG ## Branches found: 2024-10-24 13:11:56,338 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts 2024-10-24 13:11:56,338 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:11:56,338 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:56,344 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop' 2024-10-24 13:11:56,348 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-10-24 13:11:56,348 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop' 2024-10-24 13:11:56,353 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop' 2024-10-24 13:11:56,358 [ scc.git] DEBUG Already up to date. 2024-10-24 13:11:56,359 [ scc.git] DEBUG Calling 'git fetch origin pull/202/head' 2024-10-24 13:11:57,062 [ scc.git] DEBUG From https://github.com/ome/scripts 2024-10-24 13:11:57,063 [ scc.git] DEBUG * branch refs/pull/202/head -> FETCH_HEAD 2024-10-24 13:11:57,066 [ scc.git] DEBUG Calling 'git fetch origin pull/223/head' 2024-10-24 13:11:57,630 [ scc.git] DEBUG From https://github.com/ome/scripts 2024-10-24 13:11:57,630 [ scc.git] DEBUG * branch refs/pull/223/head -> FETCH_HEAD 2024-10-24 13:11:57,634 [ scc.git] DEBUG ## Unique users: [] 2024-10-24 13:11:57,634 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:11:57,634 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:57,639 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1fd6030669613cdb8879cfe6395db8c820fdcf19' 2024-10-24 13:11:57,645 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:57,650 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 202 (Add Plate support to KeyVal_to_csv.py) 1fd6030669613cdb8879cfe6395db8c820fdcf19' 2024-10-24 13:11:57,719 [ scc.git] DEBUG Auto-merging omero/annotation_scripts/KeyVal_to_csv.py 2024-10-24 13:11:57,719 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero/annotation_scripts/KeyVal_to_csv.py 2024-10-24 13:11:57,719 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2024-10-24 13:11:57,719 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2024-10-24 13:11:57,724 [ scc.git] DEBUG Calling 'git reset --hard 312afbed633613e1f728a1fe9eaac096e54318e0' 2024-10-24 13:11:57,730 [ scc.git] DEBUG HEAD is now at 312afbe Bump version: 5.8.3 → 5.8.4.dev0 2024-10-24 13:11:57,874 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:11:57,875 [ scc.git] DEBUG Calling 'git merge-base 312afbed633613e1f728a1fe9eaac096e54318e0 1fd6030669613cdb8879cfe6395db8c820fdcf19' 2024-10-24 13:11:57,881 [ scc.git] DEBUG Calling 'git diff --name-only a90f59802f6752ad74badec5c0c1d6b0c9c43b15..312afbed633613e1f728a1fe9eaac096e54318e0' 2024-10-24 13:11:57,886 [ scc.git] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py' Conflicting PR. Removed from build [OMERO-plugins-push#222](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/222/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/222/consoleText) for more details. Possible conflicts: - Upstream changes - omero/annotation_scripts/KeyVal_to_csv.py --conflicts 2024-10-24 13:11:57,890 [ scc.config] DEBUG Found github.token 2024-10-24 13:11:57,891 [ scc.git] DEBUG Not adding comment to issue #202, already --conflicts. 2024-10-24 13:11:57,891 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d8b2bbd6f5066de883a41ba5338662d60472b0d8' 2024-10-24 13:11:57,896 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:57,900 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 223 (don't attempt ROI stats on big images) d8b2bbd6f5066de883a41ba5338662d60472b0d8' 2024-10-24 13:11:57,917 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-10-24 13:11:57,920 [ scc.git] DEBUG omero/export_scripts/Batch_ROI_Export.py | 9 ++++++++- 2024-10-24 13:11:57,920 [ scc.git] DEBUG 1 file changed, 8 insertions(+), 1 deletion(-) 2024-10-24 13:11:58,268 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:11:58,269 [ scc.git] DEBUG Calling 'git submodule update' 2024-10-24 13:11:58,303 [ scc.git] DEBUG Get sha1 of %s 2024-10-24 13:11:58,304 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-10-24 13:11:58,308 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-10-24 13:11:58,342 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-10-24 13:11:58,347 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7b8c6d8520> has no local changes 2024-10-24 13:11:58,347 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/scripts Excluded PRs: - PR 216 Tom-TBT 'Key-value pair scripts enhancement' (user: Tom-TBT) - PR 206 Rdornier 'Adding a script that saves data owner as key-value pair' (user: Rdornier) - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn) - PR 103 joshmoore 'Script for calculating min/max' (exclude comment) Already up to date. Merged PRs: - PR 223 will-moore 'don't attempt ROI stats on big images' Conflicting PRs (not included): - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py' Generated by OMERO-plugins-push#222 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/222/)' 2024-10-24 13:11:58,355 [ scc.git] DEBUG [detached HEAD de2d179] merge master -Dorg -Ssuccess-only 2024-10-24 13:11:58,355 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:11:58,355 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-10-24 13:11:58,425 [ scc.config] DEBUG Found submodule.minimal-omero-client.url 2024-10-24 13:11:58,652 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:11:58,661 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch 2024-10-24 13:11:58,665 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url 2024-10-24 13:11:59,042 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:11:59,051 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch 2024-10-24 13:11:59,056 [ scc.config] DEBUG Found submodule.omero-cli-render.url 2024-10-24 13:11:59,428 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:11:59,437 [ scc.config] DEBUG Found submodule.omero-cli-render.branch 2024-10-24 13:11:59,441 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url 2024-10-24 13:11:59,816 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:11:59,829 [ scc.config] DEBUG Found submodule.omero-figure.url 2024-10-24 13:12:00,197 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:12:00,206 [ scc.config] DEBUG Found submodule.omero-figure.branch 2024-10-24 13:12:00,211 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url 2024-10-24 13:12:00,601 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:12:00,610 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch 2024-10-24 13:12:00,614 [ scc.config] DEBUG Found submodule.omero-gallery.url 2024-10-24 13:12:00,981 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:12:00,990 [ scc.config] DEBUG Found submodule.omero-gallery.branch 2024-10-24 13:12:00,994 [ scc.config] DEBUG Found submodule.omero-iviewer.url 2024-10-24 13:12:01,371 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:12:01,380 [ scc.config] DEBUG Found submodule.omero-iviewer.branch 2024-10-24 13:12:01,385 [ scc.config] DEBUG Found submodule.omero-mapr.url 2024-10-24 13:12:01,773 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:12:01,782 [ scc.config] DEBUG Found submodule.omero-mapr.branch 2024-10-24 13:12:01,786 [ scc.config] DEBUG Found submodule.omero-metadata.url 2024-10-24 13:12:02,561 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:12:02,570 [ scc.config] DEBUG Found submodule.omero-metadata.branch 2024-10-24 13:12:02,574 [ scc.config] DEBUG Found submodule.omero-parade.url 2024-10-24 13:12:02,947 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:12:02,955 [ scc.config] DEBUG Found submodule.omero-parade.branch 2024-10-24 13:12:02,959 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url 2024-10-24 13:12:03,332 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:12:03,340 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch 2024-10-24 13:12:03,345 [ scc.config] DEBUG Found submodule.omero-rois.url 2024-10-24 13:12:03,731 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:12:03,744 [ scc.config] DEBUG Found submodule.omero-signup.url 2024-10-24 13:12:04,128 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:12:04,141 [ scc.config] DEBUG Found submodule.omero-test-infra.url 2024-10-24 13:12:04,517 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:12:04,525 [ scc.config] DEBUG Found submodule.omero-test-infra.branch 2024-10-24 13:12:04,529 [ scc.config] DEBUG Found submodule.omero-upload.url 2024-10-24 13:12:04,907 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:12:04,920 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url 2024-10-24 13:12:05,286 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:12:05,299 [ scc.config] DEBUG Found submodule.omero-web-zarr.url 2024-10-24 13:12:05,677 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:12:05,686 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch 2024-10-24 13:12:05,690 [ scc.config] DEBUG Found submodule.omero-weberror.url 2024-10-24 13:12:06,065 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:12:06,074 [ scc.config] DEBUG Found submodule.omero-weberror.branch 2024-10-24 13:12:06,078 [ scc.config] DEBUG Found submodule.omero-webtest.url 2024-10-24 13:12:06,465 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:12:06,474 [ scc.config] DEBUG Found submodule.omero-webtest.branch 2024-10-24 13:12:06,478 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url 2024-10-24 13:12:06,852 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:12:06,861 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch 2024-10-24 13:12:06,865 [ scc.config] DEBUG Found submodule.scripts.url 2024-10-24 13:12:07,248 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-10-24 13:12:07,258 [ scc.config] DEBUG Found submodule.scripts.branch 2024-10-24 13:12:07,258 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-10-24 13:12:07,330 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7b8f3488b0> has local changes 2024-10-24 13:12:07,330 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-plugins Already up to date. Repository: ome/minimal-omero-client Already up to date. Merged PRs: - PR 66 jburel 'Gateway 5 9 2' Repository: ome/omero-cli-duplicate Excluded PRs: - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment) Already up to date. Merged PRs: - PR 25 jburel 'review message' Repository: ome/omero-cli-render Excluded PRs: - PR 62 dominikl 'Add export and impo(rt) commands' (stage: draft) - PR 54 dominikl 'Change rendering settings spec' (stage: draft) - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft) - PR 48 dominikl 'Don't start rendering engine to get settings' (stage: draft) Already up to date. Merged PRs: - PR 59 will-moore 'Apply settings to Plate' Repository: ome/omero-cli-zarr Excluded PRs: - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) Already up to date. Merged PRs: - PR 147 will-moore 'Name option' Conflicting PRs (not included): - PR 102 will-moore 'Zarr export tests' - PR 123 will-moore 'Support export of Fileset:ID' Repository: ome/omero-figure Excluded PRs: - PR 597 Rdornier 'Rounding zoom label in pdf' (user: Rdornier) - PR 596 Tom-TBT 'Dynamic lut for figure' (user: Tom-TBT) - PR 543 will-moore 'Plate well labels' (exclude comment) Already up to date. Merged PRs: - PR 577 Rdornier 'Fill rois' - PR 578 Rdornier 'Image outline' - PR 591 MinaEnayat 'Add Horizontal and Vertical Image Flipping Functionality' - PR 592 will-moore 'Filter owners and groups dropdown lists' - PR 598 Tom-TBT 'Query timestamps from all planes when C or Z dimensions are not filled' - PR 599 Tom-TBT 'Patch label text selection and cue for dragging' Conflicting PRs (not included): - PR 595 Rdornier 'Rotate image panel by 90°' Repository: ome/omero-fpbioimage Already up to date. Merged PRs: - PR 18 jburel 'default size z value' Repository: ome/omero-gallery Already up to date. Merged PRs: - PR 111 dependabot[bot] 'Bump semver from 5.7.0 to 5.7.2' Repository: ome/omero-iviewer Excluded PRs: - PR 486 Tom-TBT 'Query timestamps from all planes when C or Z dimensions are not filled' (user: Tom-TBT) - PR 485 Tom-TBT 'Dynamic LUT for iviewer' (user: Tom-TBT) - PR 420 will-moore 'Add release process to README' (exclude comment) - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment) Already up to date. Merged PRs: - PR 460 will-moore 'Channel min spinner fix' - PR 465 will-moore 'Save as Figure' - PR 471 will-moore 'Z projection disabled tooltip' - PR 477 dependabot[bot] 'Bump ws and socket.io' - PR 478 dependabot[bot] 'Bump socket.io from 4.6.1 to 4.7.5' - PR 482 will-moore 'Support ?collapse_left/right and ?full_page=true' - PR 483 dependabot[bot] 'Bump webpack from 5.82.0 to 5.94.0' - PR 484 barrettMCW 'improved mirroring' Repository: ome/omero-mapr Excluded PRs: - PR 87 will-moore 'Tests dont use omero utils' (status: failure) - PR 86 will-moore 'fix return of default favicon if not found' (status: failure) - PR 79 will-moore 'Right panel title' (exclude comment) Already up to date. Merged PRs: - PR 74 will-moore 'mapr extension of webclient' Repository: ome/omero-metadata Already up to date. Merged PRs: - PR 86 dominikl 'Add tablename option' Conflicting PRs (not included): - PR 55 kkoz 'Prevent users from creating columns with python keyword names' - PR 64 will-moore 'Support images_by_name for Screen and Plate' Repository: ome/omero-parade Excluded PRs: - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment) - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment) - PR 39 chris-allan 'Expand all for Screens' (exclude comment) Already up to date. Merged PRs: - PR 128 dependabot[bot] 'Bump postcss from 8.4.21 to 8.4.31' - PR 129 dependabot[bot] 'Bump @babel/traverse from 7.21.4 to 7.23.2' - PR 131 dependabot[bot] 'Bump axios from 1.3.5 to 1.6.0' Repository: ome/omero-prometheus-tools Already up to date. Merged PRs: - PR 14 jburel 'use conda-forge channel' Repository: ome/omero-rois Excluded PRs: - PR 28 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) Already up to date. Merged PRs: - PR 6 dominikl 'Add method to create masks grouped by label id' Repository: ome/omero-signup Already up to date. Conflicting PRs (not included): - PR 14 manics 'Add pre-commit (black, flake8)' Repository: openmicroscopy/omero-test-infra Already up to date. Merged PRs: - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra' Repository: ome/omero-upload Already up to date. Repository: ome/omero-virtual-microscope Already up to date. Repository: ome/omero-web-zarr Excluded PRs: - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft) Already up to date. Conflicting PRs (not included): - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' Repository: openmicroscopy/omero-weberror Already up to date. Repository: openmicroscopy/omero-webtest Already up to date. Repository: ome/rOMERO-gateway Already up to date. Conflicting PRs (not included): - PR 100 dominikl 'Run tests properly' Repository: ome/scripts Excluded PRs: - PR 216 Tom-TBT 'Key-value pair scripts enhancement' (user: Tom-TBT) - PR 206 Rdornier 'Adding a script that saves data owner as key-value pair' (user: Rdornier) - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn) - PR 103 joshmoore 'Script for calculating min/max' (exclude comment) Already up to date. Merged PRs: - PR 223 will-moore 'don't attempt ROI stats on big images' Conflicting PRs (not included): - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py' Generated by OMERO-plugins-push#222 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/222/)' 2024-10-24 13:12:07,343 [ scc.git] DEBUG [detached HEAD 1801d7b] merge master -Dorg -Ssuccess-only 2024-10-24 13:12:07,344 [ scc.merge] INFO Repository: ome/omero-plugins 2024-10-24 13:12:07,344 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-) 2024-10-24 13:12:07,344 [ scc.merge] INFO Already up to date. 2024-10-24 13:12:07,344 [ scc.merge] INFO 2024-10-24 13:12:07,344 [ scc.merge] INFO 2024-10-24 13:12:07,344 [ scc.merge] INFO Repository: ome/minimal-omero-client 2024-10-24 13:12:07,344 [ scc.merge] INFO Already up to date. 2024-10-24 13:12:07,344 [ scc.merge] INFO 2024-10-24 13:12:07,344 [ scc.merge] INFO Merged PRs: 2024-10-24 13:12:07,344 [ scc.merge] INFO - PR 66 jburel 'Gateway 5 9 2' 2024-10-24 13:12:07,344 [ scc.merge] INFO 2024-10-24 13:12:07,344 [ scc.merge] INFO Repository: ome/omero-cli-duplicate 2024-10-24 13:12:07,344 [ scc.merge] INFO Excluded PRs: 2024-10-24 13:12:07,344 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment) 2024-10-24 13:12:07,344 [ scc.merge] INFO Already up to date. 2024-10-24 13:12:07,344 [ scc.merge] INFO 2024-10-24 13:12:07,344 [ scc.merge] INFO Merged PRs: 2024-10-24 13:12:07,344 [ scc.merge] INFO - PR 25 jburel 'review message' 2024-10-24 13:12:07,344 [ scc.merge] INFO 2024-10-24 13:12:07,344 [ scc.merge] INFO Repository: ome/omero-cli-render 2024-10-24 13:12:07,344 [ scc.merge] INFO Excluded PRs: 2024-10-24 13:12:07,344 [ scc.merge] INFO - PR 62 dominikl 'Add export and impo(rt) commands' (stage: draft) 2024-10-24 13:12:07,344 [ scc.merge] INFO - PR 54 dominikl 'Change rendering settings spec' (stage: draft) 2024-10-24 13:12:07,344 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft) 2024-10-24 13:12:07,344 [ scc.merge] INFO - PR 48 dominikl 'Don't start rendering engine to get settings' (stage: draft) 2024-10-24 13:12:07,344 [ scc.merge] INFO Already up to date. 2024-10-24 13:12:07,345 [ scc.merge] INFO 2024-10-24 13:12:07,345 [ scc.merge] INFO Merged PRs: 2024-10-24 13:12:07,345 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate' 2024-10-24 13:12:07,345 [ scc.merge] INFO 2024-10-24 13:12:07,345 [ scc.merge] INFO Repository: ome/omero-cli-zarr 2024-10-24 13:12:07,345 [ scc.merge] INFO Excluded PRs: 2024-10-24 13:12:07,345 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) 2024-10-24 13:12:07,345 [ scc.merge] INFO Already up to date. 2024-10-24 13:12:07,345 [ scc.merge] INFO 2024-10-24 13:12:07,345 [ scc.merge] INFO Merged PRs: 2024-10-24 13:12:07,345 [ scc.merge] INFO - PR 147 will-moore 'Name option' 2024-10-24 13:12:07,345 [ scc.merge] INFO 2024-10-24 13:12:07,345 [ scc.merge] INFO Conflicting PRs (not included): 2024-10-24 13:12:07,345 [ scc.merge] INFO - PR 102 will-moore 'Zarr export tests' 2024-10-24 13:12:07,345 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' 2024-10-24 13:12:07,345 [ scc.merge] INFO 2024-10-24 13:12:07,345 [ scc.merge] INFO Repository: ome/omero-figure 2024-10-24 13:12:07,345 [ scc.merge] INFO Excluded PRs: 2024-10-24 13:12:07,345 [ scc.merge] INFO - PR 597 Rdornier 'Rounding zoom label in pdf' (user: Rdornier) 2024-10-24 13:12:07,345 [ scc.merge] INFO - PR 596 Tom-TBT 'Dynamic lut for figure' (user: Tom-TBT) 2024-10-24 13:12:07,345 [ scc.merge] INFO - PR 543 will-moore 'Plate well labels' (exclude comment) 2024-10-24 13:12:07,345 [ scc.merge] INFO Already up to date. 2024-10-24 13:12:07,345 [ scc.merge] INFO 2024-10-24 13:12:07,345 [ scc.merge] INFO Merged PRs: 2024-10-24 13:12:07,345 [ scc.merge] INFO - PR 577 Rdornier 'Fill rois' 2024-10-24 13:12:07,345 [ scc.merge] INFO - PR 578 Rdornier 'Image outline' 2024-10-24 13:12:07,345 [ scc.merge] INFO - PR 591 MinaEnayat 'Add Horizontal and Vertical Image Flipping Functionality' 2024-10-24 13:12:07,345 [ scc.merge] INFO - PR 592 will-moore 'Filter owners and groups dropdown lists' 2024-10-24 13:12:07,345 [ scc.merge] INFO - PR 598 Tom-TBT 'Query timestamps from all planes when C or Z dimensions are not filled' 2024-10-24 13:12:07,345 [ scc.merge] INFO - PR 599 Tom-TBT 'Patch label text selection and cue for dragging' 2024-10-24 13:12:07,345 [ scc.merge] INFO 2024-10-24 13:12:07,345 [ scc.merge] INFO Conflicting PRs (not included): 2024-10-24 13:12:07,345 [ scc.merge] INFO - PR 595 Rdornier 'Rotate image panel by 90°' 2024-10-24 13:12:07,345 [ scc.merge] INFO 2024-10-24 13:12:07,345 [ scc.merge] INFO Repository: ome/omero-fpbioimage 2024-10-24 13:12:07,345 [ scc.merge] INFO Already up to date. 2024-10-24 13:12:07,345 [ scc.merge] INFO 2024-10-24 13:12:07,345 [ scc.merge] INFO Merged PRs: 2024-10-24 13:12:07,345 [ scc.merge] INFO - PR 18 jburel 'default size z value' 2024-10-24 13:12:07,346 [ scc.merge] INFO 2024-10-24 13:12:07,346 [ scc.merge] INFO Repository: ome/omero-gallery 2024-10-24 13:12:07,346 [ scc.merge] INFO Already up to date. 2024-10-24 13:12:07,346 [ scc.merge] INFO 2024-10-24 13:12:07,346 [ scc.merge] INFO Merged PRs: 2024-10-24 13:12:07,346 [ scc.merge] INFO - PR 111 dependabot[bot] 'Bump semver from 5.7.0 to 5.7.2' 2024-10-24 13:12:07,346 [ scc.merge] INFO 2024-10-24 13:12:07,346 [ scc.merge] INFO Repository: ome/omero-iviewer 2024-10-24 13:12:07,346 [ scc.merge] INFO Excluded PRs: 2024-10-24 13:12:07,346 [ scc.merge] INFO - PR 486 Tom-TBT 'Query timestamps from all planes when C or Z dimensions are not filled' (user: Tom-TBT) 2024-10-24 13:12:07,346 [ scc.merge] INFO - PR 485 Tom-TBT 'Dynamic LUT for iviewer' (user: Tom-TBT) 2024-10-24 13:12:07,346 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment) 2024-10-24 13:12:07,346 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment) 2024-10-24 13:12:07,346 [ scc.merge] INFO Already up to date. 2024-10-24 13:12:07,346 [ scc.merge] INFO 2024-10-24 13:12:07,346 [ scc.merge] INFO Merged PRs: 2024-10-24 13:12:07,346 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix' 2024-10-24 13:12:07,346 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure' 2024-10-24 13:12:07,346 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip' 2024-10-24 13:12:07,346 [ scc.merge] INFO - PR 477 dependabot[bot] 'Bump ws and socket.io' 2024-10-24 13:12:07,346 [ scc.merge] INFO - PR 478 dependabot[bot] 'Bump socket.io from 4.6.1 to 4.7.5' 2024-10-24 13:12:07,346 [ scc.merge] INFO - PR 482 will-moore 'Support ?collapse_left/right and ?full_page=true' 2024-10-24 13:12:07,346 [ scc.merge] INFO - PR 483 dependabot[bot] 'Bump webpack from 5.82.0 to 5.94.0' 2024-10-24 13:12:07,346 [ scc.merge] INFO - PR 484 barrettMCW 'improved mirroring' 2024-10-24 13:12:07,346 [ scc.merge] INFO 2024-10-24 13:12:07,346 [ scc.merge] INFO Repository: ome/omero-mapr 2024-10-24 13:12:07,346 [ scc.merge] INFO Excluded PRs: 2024-10-24 13:12:07,346 [ scc.merge] INFO - PR 87 will-moore 'Tests dont use omero utils' (status: failure) 2024-10-24 13:12:07,346 [ scc.merge] INFO - PR 86 will-moore 'fix return of default favicon if not found' (status: failure) 2024-10-24 13:12:07,346 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment) 2024-10-24 13:12:07,346 [ scc.merge] INFO Already up to date. 2024-10-24 13:12:07,346 [ scc.merge] INFO 2024-10-24 13:12:07,346 [ scc.merge] INFO Merged PRs: 2024-10-24 13:12:07,346 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient' 2024-10-24 13:12:07,346 [ scc.merge] INFO 2024-10-24 13:12:07,346 [ scc.merge] INFO Repository: ome/omero-metadata 2024-10-24 13:12:07,346 [ scc.merge] INFO Already up to date. 2024-10-24 13:12:07,346 [ scc.merge] INFO 2024-10-24 13:12:07,346 [ scc.merge] INFO Merged PRs: 2024-10-24 13:12:07,346 [ scc.merge] INFO - PR 86 dominikl 'Add tablename option' 2024-10-24 13:12:07,347 [ scc.merge] INFO 2024-10-24 13:12:07,347 [ scc.merge] INFO Conflicting PRs (not included): 2024-10-24 13:12:07,347 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names' 2024-10-24 13:12:07,347 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate' 2024-10-24 13:12:07,347 [ scc.merge] INFO 2024-10-24 13:12:07,347 [ scc.merge] INFO Repository: ome/omero-parade 2024-10-24 13:12:07,347 [ scc.merge] INFO Excluded PRs: 2024-10-24 13:12:07,347 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment) 2024-10-24 13:12:07,347 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment) 2024-10-24 13:12:07,347 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment) 2024-10-24 13:12:07,347 [ scc.merge] INFO Already up to date. 2024-10-24 13:12:07,347 [ scc.merge] INFO 2024-10-24 13:12:07,347 [ scc.merge] INFO Merged PRs: 2024-10-24 13:12:07,347 [ scc.merge] INFO - PR 128 dependabot[bot] 'Bump postcss from 8.4.21 to 8.4.31' 2024-10-24 13:12:07,347 [ scc.merge] INFO - PR 129 dependabot[bot] 'Bump @babel/traverse from 7.21.4 to 7.23.2' 2024-10-24 13:12:07,347 [ scc.merge] INFO - PR 131 dependabot[bot] 'Bump axios from 1.3.5 to 1.6.0' 2024-10-24 13:12:07,347 [ scc.merge] INFO 2024-10-24 13:12:07,347 [ scc.merge] INFO Repository: ome/omero-prometheus-tools 2024-10-24 13:12:07,347 [ scc.merge] INFO Already up to date. 2024-10-24 13:12:07,347 [ scc.merge] INFO 2024-10-24 13:12:07,347 [ scc.merge] INFO Merged PRs: 2024-10-24 13:12:07,347 [ scc.merge] INFO - PR 14 jburel 'use conda-forge channel' 2024-10-24 13:12:07,347 [ scc.merge] INFO 2024-10-24 13:12:07,347 [ scc.merge] INFO Repository: ome/omero-rois 2024-10-24 13:12:07,347 [ scc.merge] INFO Excluded PRs: 2024-10-24 13:12:07,347 [ scc.merge] INFO - PR 28 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) 2024-10-24 13:12:07,347 [ scc.merge] INFO Already up to date. 2024-10-24 13:12:07,347 [ scc.merge] INFO 2024-10-24 13:12:07,347 [ scc.merge] INFO Merged PRs: 2024-10-24 13:12:07,347 [ scc.merge] INFO - PR 6 dominikl 'Add method to create masks grouped by label id' 2024-10-24 13:12:07,347 [ scc.merge] INFO 2024-10-24 13:12:07,347 [ scc.merge] INFO Repository: ome/omero-signup 2024-10-24 13:12:07,347 [ scc.merge] INFO Already up to date. 2024-10-24 13:12:07,347 [ scc.merge] INFO 2024-10-24 13:12:07,347 [ scc.merge] INFO Conflicting PRs (not included): 2024-10-24 13:12:07,347 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)' 2024-10-24 13:12:07,347 [ scc.merge] INFO 2024-10-24 13:12:07,347 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra 2024-10-24 13:12:07,347 [ scc.merge] INFO Already up to date. 2024-10-24 13:12:07,348 [ scc.merge] INFO 2024-10-24 13:12:07,348 [ scc.merge] INFO Merged PRs: 2024-10-24 13:12:07,348 [ scc.merge] INFO - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra' 2024-10-24 13:12:07,348 [ scc.merge] INFO 2024-10-24 13:12:07,348 [ scc.merge] INFO Repository: ome/omero-upload 2024-10-24 13:12:07,348 [ scc.merge] INFO Already up to date. 2024-10-24 13:12:07,348 [ scc.merge] INFO 2024-10-24 13:12:07,348 [ scc.merge] INFO 2024-10-24 13:12:07,348 [ scc.merge] INFO Repository: ome/omero-virtual-microscope 2024-10-24 13:12:07,348 [ scc.merge] INFO Already up to date. 2024-10-24 13:12:07,348 [ scc.merge] INFO 2024-10-24 13:12:07,348 [ scc.merge] INFO 2024-10-24 13:12:07,348 [ scc.merge] INFO Repository: ome/omero-web-zarr 2024-10-24 13:12:07,348 [ scc.merge] INFO Excluded PRs: 2024-10-24 13:12:07,348 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft) 2024-10-24 13:12:07,348 [ scc.merge] INFO Already up to date. 2024-10-24 13:12:07,348 [ scc.merge] INFO 2024-10-24 13:12:07,348 [ scc.merge] INFO Conflicting PRs (not included): 2024-10-24 13:12:07,348 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' 2024-10-24 13:12:07,348 [ scc.merge] INFO 2024-10-24 13:12:07,348 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror 2024-10-24 13:12:07,348 [ scc.merge] INFO Already up to date. 2024-10-24 13:12:07,348 [ scc.merge] INFO 2024-10-24 13:12:07,348 [ scc.merge] INFO 2024-10-24 13:12:07,348 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest 2024-10-24 13:12:07,348 [ scc.merge] INFO Already up to date. 2024-10-24 13:12:07,348 [ scc.merge] INFO 2024-10-24 13:12:07,348 [ scc.merge] INFO 2024-10-24 13:12:07,348 [ scc.merge] INFO Repository: ome/rOMERO-gateway 2024-10-24 13:12:07,348 [ scc.merge] INFO Already up to date. 2024-10-24 13:12:07,348 [ scc.merge] INFO 2024-10-24 13:12:07,348 [ scc.merge] INFO Conflicting PRs (not included): 2024-10-24 13:12:07,348 [ scc.merge] INFO - PR 100 dominikl 'Run tests properly' 2024-10-24 13:12:07,348 [ scc.merge] INFO 2024-10-24 13:12:07,348 [ scc.merge] INFO Repository: ome/scripts 2024-10-24 13:12:07,348 [ scc.merge] INFO Excluded PRs: 2024-10-24 13:12:07,348 [ scc.merge] INFO - PR 216 Tom-TBT 'Key-value pair scripts enhancement' (user: Tom-TBT) 2024-10-24 13:12:07,348 [ scc.merge] INFO - PR 206 Rdornier 'Adding a script that saves data owner as key-value pair' (user: Rdornier) 2024-10-24 13:12:07,348 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn) 2024-10-24 13:12:07,348 [ scc.merge] INFO - PR 103 joshmoore 'Script for calculating min/max' (exclude comment) 2024-10-24 13:12:07,349 [ scc.merge] INFO Already up to date. 2024-10-24 13:12:07,349 [ scc.merge] INFO 2024-10-24 13:12:07,349 [ scc.merge] INFO Merged PRs: 2024-10-24 13:12:07,349 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images' 2024-10-24 13:12:07,349 [ scc.merge] INFO 2024-10-24 13:12:07,349 [ scc.merge] INFO Conflicting PRs (not included): 2024-10-24 13:12:07,349 [ scc.merge] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py' 2024-10-24 13:12:07,349 [ scc.merge] INFO 2024-10-24 13:12:07,349 [ scc.merge] DEBUG Cleaning remote branches created for merging 2024-10-24 13:12:07,349 [ scc.git] DEBUG Calling 'git remote' 2024-10-24 13:12:07,353 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client 2024-10-24 13:12:07,353 [ scc.git] DEBUG Calling 'git remote' 2024-10-24 13:12:07,358 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:12:07,358 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate 2024-10-24 13:12:07,358 [ scc.git] DEBUG Calling 'git remote' 2024-10-24 13:12:07,362 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:12:07,362 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render 2024-10-24 13:12:07,362 [ scc.git] DEBUG Calling 'git remote' 2024-10-24 13:12:07,367 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:12:07,367 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr 2024-10-24 13:12:07,367 [ scc.git] DEBUG Calling 'git remote' 2024-10-24 13:12:07,371 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:12:07,371 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure 2024-10-24 13:12:07,371 [ scc.git] DEBUG Calling 'git remote' 2024-10-24 13:12:07,376 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:12:07,376 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage 2024-10-24 13:12:07,376 [ scc.git] DEBUG Calling 'git remote' 2024-10-24 13:12:07,380 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:12:07,380 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery 2024-10-24 13:12:07,380 [ scc.git] DEBUG Calling 'git remote' 2024-10-24 13:12:07,385 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:12:07,385 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer 2024-10-24 13:12:07,385 [ scc.git] DEBUG Calling 'git remote' 2024-10-24 13:12:07,389 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:12:07,389 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr 2024-10-24 13:12:07,389 [ scc.git] DEBUG Calling 'git remote' 2024-10-24 13:12:07,394 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:12:07,394 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata 2024-10-24 13:12:07,394 [ scc.git] DEBUG Calling 'git remote' 2024-10-24 13:12:07,398 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:12:07,398 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade 2024-10-24 13:12:07,398 [ scc.git] DEBUG Calling 'git remote' 2024-10-24 13:12:07,403 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:12:07,403 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools 2024-10-24 13:12:07,403 [ scc.git] DEBUG Calling 'git remote' 2024-10-24 13:12:07,407 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:12:07,407 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois 2024-10-24 13:12:07,408 [ scc.git] DEBUG Calling 'git remote' 2024-10-24 13:12:07,412 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:12:07,412 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup 2024-10-24 13:12:07,412 [ scc.git] DEBUG Calling 'git remote' 2024-10-24 13:12:07,416 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:12:07,417 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra 2024-10-24 13:12:07,417 [ scc.git] DEBUG Calling 'git remote' 2024-10-24 13:12:07,421 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:12:07,421 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload 2024-10-24 13:12:07,421 [ scc.git] DEBUG Calling 'git remote' 2024-10-24 13:12:07,426 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:12:07,426 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope 2024-10-24 13:12:07,426 [ scc.git] DEBUG Calling 'git remote' 2024-10-24 13:12:07,430 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:12:07,430 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr 2024-10-24 13:12:07,430 [ scc.git] DEBUG Calling 'git remote' 2024-10-24 13:12:07,435 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:12:07,435 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror 2024-10-24 13:12:07,435 [ scc.git] DEBUG Calling 'git remote' 2024-10-24 13:12:07,439 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:12:07,439 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest 2024-10-24 13:12:07,439 [ scc.git] DEBUG Calling 'git remote' 2024-10-24 13:12:07,444 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:12:07,444 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway 2024-10-24 13:12:07,444 [ scc.git] DEBUG Calling 'git remote' 2024-10-24 13:12:07,448 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-10-24 13:12:07,448 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts 2024-10-24 13:12:07,448 [ scc.git] DEBUG Calling 'git remote' 2024-10-24 13:12:07,453 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push Update component versions python3: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory python3: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: The wheel package is not available. WARNING: The wheel package is not available. WARNING: The wheel package is not available. WARNING: The wheel package is not available. WARNING: The wheel package is not available. WARNING: The wheel package is not available. /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.9/site-packages/setuptools/dist.py:466: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0' warnings.warn(tmpl.format(**locals())) /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.9/site-packages/setuptools/dist.py:466: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0' warnings.warn(tmpl.format(**locals())) python3: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory python3: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py python3: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory python3: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py python3: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory python3: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory Updating omero-gateway from 5.9.2 to 5.9.4-SNAPSHOT grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: 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Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Commit all component version changes Entering 'minimal-omero-client' Entering 'omero-cli-duplicate' Entering 'omero-cli-render' Entering 'omero-cli-zarr' Entering 'omero-figure' Entering 'omero-fpbioimage' Entering 'omero-gallery' Entering 'omero-iviewer' Entering 'omero-mapr' Entering 'omero-metadata' Entering 'omero-parade' Entering 'omero-prometheus-tools' Entering 'omero-rois' Entering 'omero-signup' Entering 'omero-test-infra' Entering 'omero-upload' Entering 'omero-virtual-microscope' Entering 'omero-web-zarr' Entering 'omero-weberror' Entering 'omero-webtest' Entering 'rOMERO-gateway' Entering 'scripts' Entering 'minimal-omero-client' [detached HEAD f8ca3a6] Update component versions 1 file changed, 1 insertion(+), 1 deletion(-) Entering 'omero-cli-duplicate' HEAD detached from 027b3e6 nothing to commit, working tree clean Entering 'omero-cli-render' HEAD detached from 173cac0 nothing to commit, working tree clean Entering 'omero-cli-zarr' HEAD detached from 9b73dd9 Untracked files: (use "git add <file>..." to include in what will be committed) .eggs/ nothing added to commit but untracked files present (use "git add" to track) Entering 'omero-figure' HEAD detached from 24444fe6 nothing to commit, working tree clean Entering 'omero-fpbioimage' HEAD detached from e5b3ca3 nothing to commit, working tree clean Entering 'omero-gallery' HEAD detached from 56f4435 nothing to commit, working tree clean Entering 'omero-iviewer' HEAD detached from a8f380f nothing to commit, working tree clean Entering 'omero-mapr' HEAD detached from 9631b15 nothing to commit, working tree clean Entering 'omero-metadata' HEAD detached from e2fc5ec nothing to commit, working tree clean Entering 'omero-parade' HEAD detached from 5d441c2 nothing to commit, working tree clean Entering 'omero-prometheus-tools' HEAD detached from 18bccb6 nothing to commit, working tree clean Entering 'omero-rois' HEAD detached from 5c752d5 nothing to commit, working tree clean Entering 'omero-signup' HEAD detached from c8610db nothing to commit, working tree clean Entering 'omero-test-infra' HEAD detached from cda3ec6 nothing to commit, working tree clean Entering 'omero-upload' HEAD detached from aca9e9c nothing to commit, working tree clean Entering 'omero-virtual-microscope' HEAD detached from deab817 nothing to commit, working tree clean Entering 'omero-web-zarr' HEAD detached from 67bb245 nothing to commit, working tree clean Entering 'omero-weberror' HEAD detached from adfa132 nothing to commit, working tree clean Entering 'omero-webtest' HEAD detached from 8da48e1 nothing to commit, working tree clean Entering 'rOMERO-gateway' HEAD detached from 7b5d64d nothing to commit, working tree clean Entering 'scripts' HEAD detached from 312afbe nothing to commit, working tree clean [detached HEAD 600d80e] Update component versions 1 file changed, 1 insertion(+), 1 deletion(-) Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 2024-10-24 13:12:51,543 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 2024-10-24 13:13:00,248 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 2024-10-24 13:13:02,600 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2024-10-24 13:13:07,058 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2024-10-24 13:13:48,828 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci [Pipeline] archiveArtifacts Archiving artifacts [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS