Started by upstream project "Trigger" build number 95 originally caused by: Started by timer [Pipeline] Start of Pipeline [Pipeline] node Running on testintegration in /home/omero/workspace/OMERO-plugins-push [Pipeline] { [Pipeline] library Loading library recursiveMerge@master Attempting to resolve master from remote references... > git --version # timeout=10 > git --version # 'git version 2.47.3' > git ls-remote -- https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Found match: refs/heads/master revision 654fab96d71411fab33e55b79057bcbf94eef8a2 The recommended git tool is: NONE No credentials specified > git rev-parse --resolve-git-dir /var/jenkins_home/jobs/OMERO-plugins-push/workspace@libs/80042be2aab2f4c47851263660cdf7971582cd0b3548009ec2196c6f3069ef1a/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Fetching without tags Fetching upstream changes from https://github.com/ome/jenkins-library-recursivemerge.git > git --version # timeout=10 > git --version # 'git version 2.47.3' > git fetch --no-tags --force --progress -- https://github.com/ome/jenkins-library-recursivemerge.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Checking out Revision 654fab96d71411fab33e55b79057bcbf94eef8a2 (master) > git config core.sparsecheckout # timeout=10 > git checkout -f 654fab96d71411fab33e55b79057bcbf94eef8a2 # timeout=10 Commit message: "Merge pull request #18 from jburel/python_311" > git rev-list --no-walk 654fab96d71411fab33e55b79057bcbf94eef8a2 # timeout=10 [Pipeline] checkout The recommended git tool is: NONE No credentials specified Fetching changes from the remote Git repository Checking out Revision 84258d5f2eea775a37267d49c87b3698bcfa5d38 (refs/remotes/origin/master) Commit message: "Merge pull request #426 from ome/dependabot/submodules/omero-prometheus-tools-eb47378" > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-plugins-push/.git # timeout=10 > git config remote.origin.url https://github.com/ome/omero-plugins.git # timeout=10 Fetching upstream changes from https://github.com/ome/omero-plugins.git > git --version # timeout=10 > git --version # 'git version 2.47.3' > git fetch --tags --force --progress -- https://github.com/ome/omero-plugins.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 84258d5f2eea775a37267d49c87b3698bcfa5d38 # timeout=10 > git rev-list --no-walk 84258d5f2eea775a37267d49c87b3698bcfa5d38 # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -fdx # timeout=10 > git submodule foreach --recursive git reset --hard # timeout=10 > git submodule foreach --recursive git clean -fdx # timeout=10 > git remote # timeout=10 > git submodule init # timeout=10 > git submodule sync # timeout=10 > git config --get remote.origin.url # timeout=10 > git submodule init # timeout=10 > git config -f .gitmodules --get-regexp ^submodule\.(.+)\.url # timeout=10 > git config --get submodule.omero-figure.url # timeout=10 > git config -f .gitmodules --get submodule.omero-figure.path # timeout=10 > git config --get submodule.minimal-omero-client.url # timeout=10 > git config -f .gitmodules --get submodule.minimal-omero-client.path # timeout=10 > git config --get submodule.scripts.url # timeout=10 > git config -f .gitmodules --get submodule.scripts.path # timeout=10 > git config --get submodule.omero-test-infra.url # timeout=10 > git config -f .gitmodules --get submodule.omero-test-infra.path # timeout=10 > git config --get submodule.omero-prometheus-tools.url # timeout=10 > git config -f .gitmodules --get submodule.omero-prometheus-tools.path # timeout=10 > git config --get submodule.omero-parade.url # timeout=10 > git config -f .gitmodules --get submodule.omero-parade.path # timeout=10 > git config --get submodule.omero-mapr.url # timeout=10 > git config -f .gitmodules --get submodule.omero-mapr.path # timeout=10 > git config --get submodule.omero-fpbioimage.url # timeout=10 > git config -f .gitmodules --get submodule.omero-fpbioimage.path # timeout=10 > git config --get submodule.omero-iviewer.url # timeout=10 > git config -f .gitmodules --get submodule.omero-iviewer.path # timeout=10 > git config --get submodule.omero-gallery.url # timeout=10 > git config -f .gitmodules --get submodule.omero-gallery.path # timeout=10 > git config --get submodule.rOMERO-gateway.url # timeout=10 > git config -f .gitmodules --get submodule.rOMERO-gateway.path # timeout=10 > git config --get submodule.omero-weberror.url # timeout=10 > git config -f .gitmodules --get submodule.omero-weberror.path # timeout=10 > git config --get submodule.omero-cli-render.url # timeout=10 > git config -f .gitmodules --get submodule.omero-cli-render.path # timeout=10 > git config --get submodule.omero-cli-duplicate.url # timeout=10 > git config -f .gitmodules --get submodule.omero-cli-duplicate.path # timeout=10 > git config --get submodule.omero-metadata.url # timeout=10 > git config -f .gitmodules --get submodule.omero-metadata.path # timeout=10 > git config --get submodule.omero-webtest.url # timeout=10 > git config -f .gitmodules --get submodule.omero-webtest.path # timeout=10 > git config --get submodule.omero-upload.url # timeout=10 > git config -f .gitmodules --get submodule.omero-upload.path # timeout=10 > git config --get submodule.omero-virtual-microscope.url # timeout=10 > git config -f .gitmodules --get submodule.omero-virtual-microscope.path # timeout=10 > git config --get submodule.omero-rois.url # timeout=10 > git config -f .gitmodules --get submodule.omero-rois.path # timeout=10 > git config --get submodule.omero-signup.url # timeout=10 > git config -f .gitmodules --get submodule.omero-signup.path # timeout=10 > git config --get submodule.omero-web-zarr.url # timeout=10 > git config -f .gitmodules --get submodule.omero-web-zarr.path # timeout=10 > git config --get submodule.omero-cli-zarr.url # timeout=10 > git config -f .gitmodules --get submodule.omero-cli-zarr.path # timeout=10 > git submodule update --init --recursive omero-figure # timeout=10 > git submodule update --init --recursive minimal-omero-client # timeout=10 > git submodule update --init --recursive scripts # timeout=10 > git submodule update --init --recursive omero-test-infra # timeout=10 > git submodule update --init --recursive omero-prometheus-tools # timeout=10 > git submodule update --init --recursive omero-parade # timeout=10 > git submodule update --init --recursive omero-mapr # timeout=10 > git submodule update --init --recursive omero-fpbioimage # timeout=10 > git submodule update --init --recursive omero-iviewer # timeout=10 > git submodule update --init --recursive omero-gallery # timeout=10 > git submodule update --init --recursive rOMERO-gateway # timeout=10 > git submodule update --init --recursive omero-weberror # timeout=10 > git submodule update --init --recursive omero-cli-render # timeout=10 > git submodule update --init --recursive omero-cli-duplicate # timeout=10 > git submodule update --init --recursive omero-metadata # timeout=10 > git submodule update --init --recursive omero-webtest # timeout=10 > git submodule update --init --recursive omero-upload # timeout=10 > git submodule update --init --recursive omero-virtual-microscope # timeout=10 > git submodule update --init --recursive omero-rois # timeout=10 [Pipeline] pwd [Pipeline] copyArtifacts Copied 1 artifact from "OMERO-build-push" build number 71 [Pipeline] sh + pushd build ~/workspace/OMERO-plugins-push/build ~/workspace/OMERO-plugins-push + curl -sfL https://github.com/ome/build-infra/archive/master.tar.gz + tar -zxf - + popd ~/workspace/OMERO-plugins-push + python3.11 -m venv build/venv > git submodule update --init --recursive omero-signup # timeout=10 > git submodule update --init --recursive omero-web-zarr # timeout=10 > git submodule update --init --recursive omero-cli-zarr # timeout=10 + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-plugins-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-plugins-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(venv) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + python3.11 -m pip install -U pip Requirement already satisfied: pip in ./build/venv/lib64/python3.11/site-packages (22.3.1) Collecting pip Using cached pip-26.0.1-py3-none-any.whl (1.8 MB) Installing collected packages: pip Attempting uninstall: pip Found existing installation: pip 22.3.1 Uninstalling pip-22.3.1: Successfully uninstalled pip-22.3.1 Successfully installed pip-26.0.1 + python3.11 -m pip install scc Collecting scc Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB) Collecting PyGithub>=1.54 (from scc) Using cached pygithub-2.8.1-py3-none-any.whl.metadata (3.9 kB) Collecting PyYAML>=5.1 (from scc) Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB) Collecting future (from scc) Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) Collecting ruamel.yaml (from scc) Using cached ruamel_yaml-0.19.1-py3-none-any.whl.metadata (16 kB) Collecting ruamel.yaml.jinja2 (from scc) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB) Collecting six (from scc) Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) Collecting urllib3<2 (from scc) Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB) Collecting yaclifw<0.3,>=0.2.0 (from scc) Using cached yaclifw-0.2.0-py3-none-any.whl Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc) Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl.metadata (10.0 kB) Collecting requests>=2.14.0 (from PyGithub>=1.54->scc) Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB) Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached pyjwt-2.11.0-py3-none-any.whl.metadata (4.0 kB) Collecting typing-extensions>=4.5.0 (from PyGithub>=1.54->scc) Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB) Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cryptography-46.0.5-cp311-abi3-manylinux_2_34_x86_64.whl.metadata (5.7 kB) Collecting cffi>=2.0.0 (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cffi-2.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (2.6 kB) Collecting pycparser (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached pycparser-3.0-py3-none-any.whl.metadata (8.2 kB) Collecting charset_normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (37 kB) Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached idna-3.11-py3-none-any.whl.metadata (8.4 kB) Collecting certifi>=2017.4.17 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached certifi-2026.2.25-py3-none-any.whl.metadata (2.5 kB) Using cached scc-0.20.0-py3-none-any.whl (48 kB) Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) Using cached pygithub-2.8.1-py3-none-any.whl (432 kB) Using cached pyjwt-2.11.0-py3-none-any.whl (28 kB) Using cached cryptography-46.0.5-cp311-abi3-manylinux_2_34_x86_64.whl (4.5 MB) Using cached cffi-2.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (215 kB) Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl (1.4 MB) Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) Using cached requests-2.32.5-py3-none-any.whl (64 kB) Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB) Using cached idna-3.11-py3-none-any.whl (71 kB) Using cached certifi-2026.2.25-py3-none-any.whl (153 kB) Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB) Using cached future-1.0.0-py3-none-any.whl (491 kB) Using cached pycparser-3.0-py3-none-any.whl (48 kB) Using cached ruamel_yaml-0.19.1-py3-none-any.whl (118 kB) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB) Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) Installing collected packages: urllib3, typing-extensions, six, ruamel.yaml, PyYAML, pyjwt, pycparser, idna, future, charset_normalizer, certifi, yaclifw, ruamel.yaml.jinja2, requests, cffi, pynacl, cryptography, PyGithub, scc Successfully installed PyGithub-2.8.1 PyYAML-6.0.3 certifi-2026.2.25 cffi-2.0.0 charset_normalizer-3.4.4 cryptography-46.0.5 future-1.0.0 idna-3.11 pycparser-3.0 pyjwt-2.11.0 pynacl-1.6.2 requests-2.32.5 ruamel.yaml-0.19.1 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.17.0 typing-extensions-4.15.0 urllib3-1.26.20 yaclifw-0.2.0 [Pipeline] sh + export BASE_REPO=omero-plugins.git + BASE_REPO=omero-plugins.git + export BASE_BRANCH=master + BASE_BRANCH=master + export VERSION_LOG=/home/omero/workspace/OMERO-plugins-push/build/version.tsv + VERSION_LOG=/home/omero/workspace/OMERO-plugins-push/build/version.tsv + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-plugins-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-plugins-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(venv) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + '[' merge_ci '!=' null ']' + export PUSH_BRANCH=merge_ci + PUSH_BRANCH=merge_ci + '[' null '!=' null ']' + export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment' + STATUS=success-only + MERGE_OPTIONS='-vvv --no-ask --reset --comment' + bash build/build-infra-master/recursive-merge Merge base repository (no submodule updates) 2026-03-05 00:37:13,041 [ scc.config] DEBUG Found github.token 2026-03-05 00:37:13,042 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2026-03-05 00:37:13,245 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:37:13,649 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:37:14,036 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2026-03-05 00:37:14,036 [ scc.gh] DEBUG 4305 remaining from 5000 (Reset at 01:03 2026-03-05 00:37:14,037 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-03-05 00:37:14,039 [ scc.git] DEBUG Check current status 2026-03-05 00:37:14,039 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-03-05 00:37:14,042 [ scc.git] DEBUG 84258d5 Merge pull request #426 from ome/dependabot/submodules/omero-prometheus-tools-eb47378 2026-03-05 00:37:14,042 [ scc.git] DEBUG Calling 'git submodule status' 2026-03-05 00:37:14,088 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master) 2026-03-05 00:37:14,091 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2026-03-05 00:37:14,094 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c) 2026-03-05 00:37:14,097 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587) 2026-03-05 00:37:14,101 [ scc.git] DEBUG fb316a7ee6ca8aa5bc8dc55dd0acfa88fe3ca228 omero-figure (v7.2.0-1-gfb316a7e) 2026-03-05 00:37:14,104 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2026-03-05 00:37:14,106 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2026-03-05 00:37:14,109 [ scc.git] DEBUG b4102d46958a805cacff0c7ccceb05ccff746309 omero-iviewer (v0.15.0-1-gb4102d4) 2026-03-05 00:37:14,112 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2026-03-05 00:37:14,115 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c) 2026-03-05 00:37:14,117 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2026-03-05 00:37:14,120 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2026-03-05 00:37:14,124 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2026-03-05 00:37:14,126 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2026-03-05 00:37:14,130 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6) 2026-03-05 00:37:14,132 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2026-03-05 00:37:14,135 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2026-03-05 00:37:14,137 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313) 2026-03-05 00:37:14,140 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2026-03-05 00:37:14,142 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2026-03-05 00:37:14,145 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2026-03-05 00:37:14,148 [ scc.git] DEBUG 312afbed633613e1f728a1fe9eaac096e54318e0 scripts (v5.8.3-1-g312afbe) 2026-03-05 00:37:14,151 [ scc.config] DEBUG Found remote.origin.url 2026-03-05 00:37:14,545 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins HTTP/1.1" 200 None 2026-03-05 00:37:15,013 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-03-05 00:37:15,428 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-03-05 00:37:15,846 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-03-05 00:37:16,287 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-03-05 00:37:16,288 [ scc.git] DEBUG Resetting... 2026-03-05 00:37:16,288 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2026-03-05 00:37:16,296 [ scc.git] DEBUG HEAD is now at 84258d5 Merge pull request #426 from ome/dependabot/submodules/omero-prometheus-tools-eb47378 2026-03-05 00:37:16,296 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2026-03-05 00:37:16,393 [ scc.git] DEBUG Check current status 2026-03-05 00:37:16,393 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-03-05 00:37:16,395 [ scc.git] DEBUG 84258d5 Merge pull request #426 from ome/dependabot/submodules/omero-prometheus-tools-eb47378 2026-03-05 00:37:16,396 [ scc.git] DEBUG Calling 'git submodule status' 2026-03-05 00:37:16,439 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master) 2026-03-05 00:37:16,442 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2026-03-05 00:37:16,445 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c) 2026-03-05 00:37:16,449 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587) 2026-03-05 00:37:16,452 [ scc.git] DEBUG fb316a7ee6ca8aa5bc8dc55dd0acfa88fe3ca228 omero-figure (v7.2.0-1-gfb316a7e) 2026-03-05 00:37:16,455 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2026-03-05 00:37:16,458 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2026-03-05 00:37:16,461 [ scc.git] DEBUG b4102d46958a805cacff0c7ccceb05ccff746309 omero-iviewer (v0.15.0-1-gb4102d4) 2026-03-05 00:37:16,464 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2026-03-05 00:37:16,466 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c) 2026-03-05 00:37:16,469 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2026-03-05 00:37:16,472 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2026-03-05 00:37:16,475 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2026-03-05 00:37:16,478 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2026-03-05 00:37:16,481 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6) 2026-03-05 00:37:16,483 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2026-03-05 00:37:16,486 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2026-03-05 00:37:16,488 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313) 2026-03-05 00:37:16,491 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2026-03-05 00:37:16,493 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2026-03-05 00:37:16,496 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2026-03-05 00:37:16,499 [ scc.git] DEBUG 312afbed633613e1f728a1fe9eaac096e54318e0 scripts (v5.8.3-1-g312afbe) 2026-03-05 00:37:16,500 [ scc.merge] INFO Merging Pull Request(s) based on master 2026-03-05 00:37:16,500 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2026-03-05 00:37:16,500 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2026-03-05 00:37:16,500 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2026-03-05 00:37:16,500 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2026-03-05 00:37:16,500 [ scc.repo] DEBUG ## PRs found: 2026-03-05 00:37:16,811 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/pulls HTTP/1.1" 200 None 2026-03-05 00:37:17,336 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/433 HTTP/1.1" 200 None 2026-03-05 00:37:17,337 [ scc.repo] DEBUG # ... Include label: dependencies 2026-03-05 00:37:17,337 [ scc.repo] DEBUG - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2026-03-05 00:37:17,824 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/432 HTTP/1.1" 200 None 2026-03-05 00:37:17,825 [ scc.repo] DEBUG # ... Include label: dependencies 2026-03-05 00:37:17,825 [ scc.repo] DEBUG - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2026-03-05 00:37:18,343 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/429 HTTP/1.1" 200 None 2026-03-05 00:37:18,344 [ scc.repo] DEBUG # ... Include label: dependencies 2026-03-05 00:37:18,344 [ scc.repo] DEBUG - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2026-03-05 00:37:18,344 [ scc.repo] DEBUG ## Branches found: 2026-03-05 00:37:18,344 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:37:18,344 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:37:18,347 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-03-05 00:37:18,349 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-03-05 00:37:18,349 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-03-05 00:37:18,351 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-03-05 00:37:18,354 [ scc.git] DEBUG Already up to date. 2026-03-05 00:37:18,354 [ scc.git] DEBUG Calling 'git fetch origin pull/429/head' 2026-03-05 00:37:18,623 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-03-05 00:37:18,623 [ scc.git] DEBUG * branch refs/pull/429/head -> FETCH_HEAD 2026-03-05 00:37:18,628 [ scc.git] DEBUG Calling 'git fetch origin pull/432/head' 2026-03-05 00:37:19,088 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-03-05 00:37:19,088 [ scc.git] DEBUG * branch refs/pull/432/head -> FETCH_HEAD 2026-03-05 00:37:19,093 [ scc.git] DEBUG Calling 'git fetch origin pull/433/head' 2026-03-05 00:37:19,483 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-03-05 00:37:19,483 [ scc.git] DEBUG * branch refs/pull/433/head -> FETCH_HEAD 2026-03-05 00:37:19,487 [ scc.git] DEBUG ## Unique users: [] 2026-03-05 00:37:19,487 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:37:19,487 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:37:19,489 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2026-03-05 00:37:19,492 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:37:19,494 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 429 (Bump scripts from `312afbe` to `4b4c755`) 3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2026-03-05 00:37:19,508 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-03-05 00:37:19,511 [ scc.git] DEBUG scripts | 2 +- 2026-03-05 00:37:19,512 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-03-05 00:37:19,655 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:37:19,655 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25bf90a85a7e0945e652f9d78050c8c4860acb51' 2026-03-05 00:37:19,658 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:37:19,661 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 432 (Bump omero-figure from `fb316a7` to `9cc36cd`) 25bf90a85a7e0945e652f9d78050c8c4860acb51' 2026-03-05 00:37:19,675 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-03-05 00:37:19,678 [ scc.git] DEBUG omero-figure | 2 +- 2026-03-05 00:37:19,678 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-03-05 00:37:20,057 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:37:20,058 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6fd5dc72efc90d7f749b332dba3f903414852d74' 2026-03-05 00:37:20,061 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:37:20,063 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 433 (Bump omero-iviewer from `b4102d4` to `7a798ce`) 6fd5dc72efc90d7f749b332dba3f903414852d74' 2026-03-05 00:37:20,078 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-03-05 00:37:20,081 [ scc.git] DEBUG omero-iviewer | 2 +- 2026-03-05 00:37:20,081 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-03-05 00:37:20,451 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:37:20,452 [ scc.git] DEBUG Calling 'git submodule update' 2026-03-05 00:37:20,513 [ scc.git] DEBUG Submodule path 'omero-figure': checked out '9cc36cde05bde4def7b62b07c2e9ae5f66712e96' 2026-03-05 00:37:20,533 [ scc.git] DEBUG Submodule path 'omero-iviewer': checked out '7a798ceeb3926d049d73788555fb63269a071052' 2026-03-05 00:37:20,547 [ scc.git] DEBUG Submodule path 'scripts': checked out '4b4c755af4ccf8a5e709548d1f8415fab48a4867' 2026-03-05 00:37:20,548 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:37:20,548 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:37:20,550 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-03-05 00:37:20,627 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f5265573f10> has no local changes 2026-03-05 00:37:20,627 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone Repository: ome/omero-plugins Already up to date. Merged PRs: - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' Generated by OMERO-plugins-push#79 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/)' 2026-03-05 00:37:20,696 [ scc.git] DEBUG [detached HEAD a35d020] merge master -Dorg -Snone 2026-03-05 00:37:20,697 [ scc.merge] INFO Repository: ome/omero-plugins 2026-03-05 00:37:20,697 [ scc.merge] INFO Already up to date. 2026-03-05 00:37:20,697 [ scc.merge] INFO 2026-03-05 00:37:20,697 [ scc.merge] INFO Merged PRs: 2026-03-05 00:37:20,697 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2026-03-05 00:37:20,697 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2026-03-05 00:37:20,697 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2026-03-05 00:37:20,697 [ scc.merge] INFO 2026-03-05 00:37:20,697 [ scc.merge] DEBUG Cleaning remote branches created for merging 2026-03-05 00:37:20,697 [ scc.git] DEBUG Calling 'git remote' Synchronizing submodule url for 'minimal-omero-client' Synchronizing submodule url for 'omero-cli-duplicate' Synchronizing submodule url for 'omero-cli-render' Synchronizing submodule url for 'omero-cli-zarr' Synchronizing submodule url for 'omero-figure' Synchronizing submodule url for 'omero-fpbioimage' Synchronizing submodule url for 'omero-gallery' Synchronizing submodule url for 'omero-iviewer' Synchronizing submodule url for 'omero-mapr' Synchronizing submodule url for 'omero-metadata' Synchronizing submodule url for 'omero-parade' Synchronizing submodule url for 'omero-prometheus-tools' Synchronizing submodule url for 'omero-rois' Synchronizing submodule url for 'omero-signup' Synchronizing submodule url for 'omero-test-infra' Synchronizing submodule url for 'omero-upload' Synchronizing submodule url for 'omero-virtual-microscope' Synchronizing submodule url for 'omero-web-zarr' Synchronizing submodule url for 'omero-weberror' Synchronizing submodule url for 'omero-webtest' Synchronizing submodule url for 'rOMERO-gateway' Synchronizing submodule url for 'scripts' Submodule path 'omero-cli-render': checked out '68b73035cf2ab21ddd92022b80bda0966547b3c8' Submodule path 'omero-cli-zarr': checked out '9f844b877d8e19e42a69d7ba43f7dc086680fbec' From https://github.com/ome/omero-figure * [new branch] dependabot/npm_and_yarn/dompurify-3.3.1 -> origin/dependabot/npm_and_yarn/dompurify-3.3.1 Submodule path 'omero-figure': checked out '186921eab53e6bdfe6df0720213e1c3759898cf9' Submodule path 'omero-iviewer': checked out '5e2de43ad401fb00690a79644056e0ac15fabfd5' Submodule path 'omero-metadata': checked out '55060a256e99567f21e64ff3c225d933fba1c501' Submodule path 'omero-rois': checked out 'fc9ff96901ce7b92e3ba51327ba7ba64fff76959' Submodule path 'omero-test-infra': checked out 'c8a0015b0ce72ee0a49e6968af33de10ea00bc77' Submodule path 'omero-virtual-microscope': checked out '160d894dfb61e69618903425b340c7888f3a934f' Submodule path 'omero-web-zarr': checked out '4e1e685dff22136abfd2626f6fd6eaf985aba368' Submodule path 'scripts': checked out '5b4d76862a7141257c9ff221ff7f009f7ec416c0' Merge all submodules using repository configuration: base-branch: master submodules: scripts: base-branch: develop omero-web-zarr: base-branch: main 2026-03-05 00:37:29,231 [ scc.config] DEBUG Found github.token 2026-03-05 00:37:29,233 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2026-03-05 00:37:29,417 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:37:29,811 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:37:30,212 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2026-03-05 00:37:30,213 [ scc.gh] DEBUG 4291 remaining from 5000 (Reset at 01:03 2026-03-05 00:37:30,214 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-03-05 00:37:30,216 [ scc.git] DEBUG Check current status 2026-03-05 00:37:30,216 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-03-05 00:37:30,219 [ scc.git] DEBUG a35d020 merge master -Dorg -Snone 2026-03-05 00:37:30,219 [ scc.git] DEBUG Calling 'git submodule status' 2026-03-05 00:37:30,264 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master) 2026-03-05 00:37:30,266 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2026-03-05 00:37:30,269 [ scc.git] DEBUG +68b73035cf2ab21ddd92022b80bda0966547b3c8 omero-cli-render (v0.8.1-28-g68b7303) 2026-03-05 00:37:30,272 [ scc.git] DEBUG +9f844b877d8e19e42a69d7ba43f7dc086680fbec omero-cli-zarr (v0.8.0-1-g9f844b8) 2026-03-05 00:37:30,276 [ scc.git] DEBUG +186921eab53e6bdfe6df0720213e1c3759898cf9 omero-figure (v7.4.0-1-g186921ea) 2026-03-05 00:37:30,279 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2026-03-05 00:37:30,282 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2026-03-05 00:37:30,285 [ scc.git] DEBUG +5e2de43ad401fb00690a79644056e0ac15fabfd5 omero-iviewer (v0.16.0-20-g5e2de43) 2026-03-05 00:37:30,287 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2026-03-05 00:37:30,290 [ scc.git] DEBUG +55060a256e99567f21e64ff3c225d933fba1c501 omero-metadata (v0.13.0-8-g55060a2) 2026-03-05 00:37:30,293 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2026-03-05 00:37:30,296 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2026-03-05 00:37:30,299 [ scc.git] DEBUG +fc9ff96901ce7b92e3ba51327ba7ba64fff76959 omero-rois (v0.4.1-1-gfc9ff96) 2026-03-05 00:37:30,301 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2026-03-05 00:37:30,304 [ scc.git] DEBUG +c8a0015b0ce72ee0a49e6968af33de10ea00bc77 omero-test-infra (v0.6.3-67-gc8a0015) 2026-03-05 00:37:30,307 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2026-03-05 00:37:30,310 [ scc.git] DEBUG +160d894dfb61e69618903425b340c7888f3a934f omero-virtual-microscope (v1.1.1-12-g160d894) 2026-03-05 00:37:30,312 [ scc.git] DEBUG +4e1e685dff22136abfd2626f6fd6eaf985aba368 omero-web-zarr (v0.1.1-13-g4e1e685) 2026-03-05 00:37:30,315 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2026-03-05 00:37:30,317 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2026-03-05 00:37:30,320 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2026-03-05 00:37:30,324 [ scc.git] DEBUG +5b4d76862a7141257c9ff221ff7f009f7ec416c0 scripts (v5.10.0-1-g5b4d768) 2026-03-05 00:37:30,327 [ scc.config] DEBUG Found remote.origin.url 2026-03-05 00:37:30,327 [ scc.git] DEBUG Reading repository configuration from repositories.yml 2026-03-05 00:37:30,328 [ scc.git] DEBUG Repository configuration: base-branch: master submodules: omero-web-zarr: base-branch: main scripts: base-branch: develop 2026-03-05 00:37:30,703 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins HTTP/1.1" 200 None 2026-03-05 00:37:31,210 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-03-05 00:37:31,633 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-03-05 00:37:32,214 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-03-05 00:37:32,660 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-03-05 00:37:32,661 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-03-05 00:37:32,738 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client 2026-03-05 00:37:32,739 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-03-05 00:37:32,741 [ scc.git] DEBUG Check current status 2026-03-05 00:37:32,741 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-03-05 00:37:32,743 [ scc.git] DEBUG ca8c2ea Merge pull request #67 from jburel/gateway_5_10_0 2026-03-05 00:37:32,743 [ scc.git] DEBUG Calling 'git submodule status' 2026-03-05 00:37:32,782 [ scc.config] DEBUG Found remote.origin.url 2026-03-05 00:37:33,196 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/minimal-omero-client HTTP/1.1" 200 None 2026-03-05 00:37:33,662 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-03-05 00:37:34,069 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-03-05 00:37:34,483 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-03-05 00:37:34,918 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-03-05 00:37:34,920 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-03-05 00:37:34,959 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:37:34,960 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate 2026-03-05 00:37:34,960 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-03-05 00:37:34,962 [ scc.git] DEBUG Check current status 2026-03-05 00:37:34,962 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-03-05 00:37:34,964 [ scc.git] DEBUG 4777ef8 Merge pull request #27 from jburel/build 2026-03-05 00:37:34,964 [ scc.git] DEBUG Calling 'git submodule status' 2026-03-05 00:37:35,004 [ scc.config] DEBUG Found remote.origin.url 2026-03-05 00:37:35,444 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate HTTP/1.1" 200 None 2026-03-05 00:37:35,889 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-03-05 00:37:36,336 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-03-05 00:37:36,758 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-03-05 00:37:37,165 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-03-05 00:37:37,166 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-03-05 00:37:37,206 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:37:37,206 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render 2026-03-05 00:37:37,206 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-03-05 00:37:37,208 [ scc.git] DEBUG Check current status 2026-03-05 00:37:37,209 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-03-05 00:37:37,211 [ scc.git] DEBUG 68b7303 Merge pull request #74 from jburel/changelog2ghrelease 2026-03-05 00:37:37,211 [ scc.git] DEBUG Calling 'git submodule status' 2026-03-05 00:37:37,253 [ scc.config] DEBUG Found remote.origin.url 2026-03-05 00:37:37,687 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render HTTP/1.1" 200 None 2026-03-05 00:37:38,156 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-03-05 00:37:38,594 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-03-05 00:37:39,028 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-03-05 00:37:39,467 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-03-05 00:37:39,468 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-03-05 00:37:39,507 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:37:39,508 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr 2026-03-05 00:37:39,508 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-03-05 00:37:39,510 [ scc.git] DEBUG Check current status 2026-03-05 00:37:39,510 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-03-05 00:37:39,513 [ scc.git] DEBUG 9f844b8 Bump version: 0.8.0 → 0.8.1.dev0 2026-03-05 00:37:39,513 [ scc.git] DEBUG Calling 'git submodule status' 2026-03-05 00:37:39,552 [ scc.config] DEBUG Found remote.origin.url 2026-03-05 00:37:40,000 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr HTTP/1.1" 200 None 2026-03-05 00:37:40,515 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-03-05 00:37:40,935 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-03-05 00:37:41,381 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-03-05 00:37:41,795 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-03-05 00:37:41,796 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-03-05 00:37:41,834 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:37:41,834 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure 2026-03-05 00:37:41,834 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-03-05 00:37:41,837 [ scc.git] DEBUG Check current status 2026-03-05 00:37:41,837 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-03-05 00:37:41,840 [ scc.git] DEBUG 186921ea Bump version: 7.4.0 → 7.4.1.dev0 2026-03-05 00:37:41,840 [ scc.git] DEBUG Calling 'git submodule status' 2026-03-05 00:37:41,879 [ scc.config] DEBUG Found remote.origin.url 2026-03-05 00:37:42,364 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure HTTP/1.1" 200 None 2026-03-05 00:37:42,813 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-03-05 00:37:43,404 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-03-05 00:37:43,837 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-03-05 00:37:44,271 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-03-05 00:37:44,272 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-03-05 00:37:44,311 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:37:44,311 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage 2026-03-05 00:37:44,312 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-03-05 00:37:44,313 [ scc.git] DEBUG Check current status 2026-03-05 00:37:44,314 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-03-05 00:37:44,316 [ scc.git] DEBUG 3b6c05a Merge pull request #30 from jburel/build 2026-03-05 00:37:44,316 [ scc.git] DEBUG Calling 'git submodule status' 2026-03-05 00:37:44,356 [ scc.config] DEBUG Found remote.origin.url 2026-03-05 00:37:44,792 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage HTTP/1.1" 200 None 2026-03-05 00:37:45,282 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-03-05 00:37:45,698 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-03-05 00:37:46,152 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-03-05 00:37:46,601 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-03-05 00:37:46,602 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-03-05 00:37:46,642 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:37:46,643 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery 2026-03-05 00:37:46,643 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-03-05 00:37:46,645 [ scc.git] DEBUG Check current status 2026-03-05 00:37:46,645 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-03-05 00:37:46,647 [ scc.git] DEBUG 2a621da Merge pull request #112 from jburel/build 2026-03-05 00:37:46,647 [ scc.git] DEBUG Calling 'git submodule status' 2026-03-05 00:37:46,686 [ scc.config] DEBUG Found remote.origin.url 2026-03-05 00:37:47,130 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery HTTP/1.1" 200 None 2026-03-05 00:37:47,581 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-03-05 00:37:48,007 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-03-05 00:37:48,447 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-03-05 00:37:48,879 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-03-05 00:37:48,880 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-03-05 00:37:48,921 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:37:48,922 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer 2026-03-05 00:37:48,922 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-03-05 00:37:48,924 [ scc.git] DEBUG Check current status 2026-03-05 00:37:48,924 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-03-05 00:37:48,926 [ scc.git] DEBUG 5e2de43 Merge pull request #510 from joshmoore/issue-509 2026-03-05 00:37:48,927 [ scc.git] DEBUG Calling 'git submodule status' 2026-03-05 00:37:48,966 [ scc.config] DEBUG Found remote.origin.url 2026-03-05 00:37:49,402 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer HTTP/1.1" 200 None 2026-03-05 00:37:49,859 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-03-05 00:37:50,278 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-03-05 00:37:50,704 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-03-05 00:37:51,110 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-03-05 00:37:51,111 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-03-05 00:37:51,150 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:37:51,151 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr 2026-03-05 00:37:51,151 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-03-05 00:37:51,153 [ scc.git] DEBUG Check current status 2026-03-05 00:37:51,153 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-03-05 00:37:51,155 [ scc.git] DEBUG 0a557da Bump version: 0.5.3 → 0.5.4.dev0 2026-03-05 00:37:51,155 [ scc.git] DEBUG Calling 'git submodule status' 2026-03-05 00:37:51,193 [ scc.config] DEBUG Found remote.origin.url 2026-03-05 00:37:51,618 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr HTTP/1.1" 200 None 2026-03-05 00:37:52,100 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-03-05 00:37:52,529 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-03-05 00:37:52,966 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-03-05 00:37:53,397 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-03-05 00:37:53,398 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-03-05 00:37:53,437 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:37:53,438 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata 2026-03-05 00:37:53,438 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-03-05 00:37:53,440 [ scc.git] DEBUG Check current status 2026-03-05 00:37:53,440 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-03-05 00:37:53,442 [ scc.git] DEBUG 55060a2 Merge pull request #90 from will-moore/pypi_release_action 2026-03-05 00:37:53,443 [ scc.git] DEBUG Calling 'git submodule status' 2026-03-05 00:37:53,482 [ scc.config] DEBUG Found remote.origin.url 2026-03-05 00:37:53,938 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata HTTP/1.1" 200 None 2026-03-05 00:37:54,399 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-03-05 00:37:54,965 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-03-05 00:37:55,375 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-03-05 00:37:55,801 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-03-05 00:37:55,802 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-03-05 00:37:55,841 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:37:55,842 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade 2026-03-05 00:37:55,842 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-03-05 00:37:55,844 [ scc.git] DEBUG Check current status 2026-03-05 00:37:55,844 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-03-05 00:37:55,846 [ scc.git] DEBUG fb5ae86 Merge pull request #133 from jburel/build 2026-03-05 00:37:55,846 [ scc.git] DEBUG Calling 'git submodule status' 2026-03-05 00:37:55,886 [ scc.config] DEBUG Found remote.origin.url 2026-03-05 00:37:56,316 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade HTTP/1.1" 200 None 2026-03-05 00:37:56,774 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-03-05 00:37:57,191 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-03-05 00:37:57,621 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-03-05 00:37:58,040 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-03-05 00:37:58,041 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-03-05 00:37:58,080 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:37:58,081 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools 2026-03-05 00:37:58,081 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-03-05 00:37:58,083 [ scc.git] DEBUG Check current status 2026-03-05 00:37:58,083 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-03-05 00:37:58,085 [ scc.git] DEBUG eb47378 Merge pull request #15 from jburel/build 2026-03-05 00:37:58,085 [ scc.git] DEBUG Calling 'git submodule status' 2026-03-05 00:37:58,123 [ scc.config] DEBUG Found remote.origin.url 2026-03-05 00:37:58,635 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools HTTP/1.1" 200 None 2026-03-05 00:37:59,285 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-03-05 00:37:59,715 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-03-05 00:38:00,150 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-03-05 00:38:00,572 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-03-05 00:38:00,574 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-03-05 00:38:00,613 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:38:00,613 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois 2026-03-05 00:38:00,613 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-03-05 00:38:00,615 [ scc.git] DEBUG Check current status 2026-03-05 00:38:00,615 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-03-05 00:38:00,618 [ scc.git] DEBUG fc9ff96 Bump version: 0.4.1 → 0.4.2.dev0 2026-03-05 00:38:00,618 [ scc.git] DEBUG Calling 'git submodule status' 2026-03-05 00:38:00,657 [ scc.config] DEBUG Found remote.origin.url 2026-03-05 00:38:01,128 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois HTTP/1.1" 200 None 2026-03-05 00:38:01,619 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-03-05 00:38:02,057 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-03-05 00:38:02,482 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-03-05 00:38:02,901 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-03-05 00:38:02,903 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-03-05 00:38:02,942 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:38:02,942 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup 2026-03-05 00:38:02,942 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-03-05 00:38:02,945 [ scc.git] DEBUG Check current status 2026-03-05 00:38:02,945 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-03-05 00:38:02,947 [ scc.git] DEBUG be76813 Merge pull request #21 from jburel/build 2026-03-05 00:38:02,947 [ scc.git] DEBUG Calling 'git submodule status' 2026-03-05 00:38:02,986 [ scc.config] DEBUG Found remote.origin.url 2026-03-05 00:38:03,474 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup HTTP/1.1" 200 None 2026-03-05 00:38:03,956 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-03-05 00:38:04,389 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-03-05 00:38:04,806 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-03-05 00:38:05,231 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-03-05 00:38:05,232 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-03-05 00:38:05,269 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:38:05,270 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra 2026-03-05 00:38:05,270 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-03-05 00:38:05,272 [ scc.git] DEBUG Check current status 2026-03-05 00:38:05,272 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-03-05 00:38:05,274 [ scc.git] DEBUG c8a0015 Merge pull request #84 from joshmoore/fix-port-readme 2026-03-05 00:38:05,275 [ scc.git] DEBUG Calling 'git submodule status' 2026-03-05 00:38:05,313 [ scc.config] DEBUG Found remote.origin.url 2026-03-05 00:38:05,645 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-test-infra HTTP/1.1" 301 198 Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 2026-03-05 00:38:05,647 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 2026-03-05 00:38:05,962 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/111908919 HTTP/1.1" 200 None 2026-03-05 00:38:06,434 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-03-05 00:38:06,842 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-03-05 00:38:07,264 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-03-05 00:38:07,692 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-03-05 00:38:07,693 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-03-05 00:38:07,731 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:38:07,731 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload 2026-03-05 00:38:07,732 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-03-05 00:38:07,734 [ scc.git] DEBUG Check current status 2026-03-05 00:38:07,734 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-03-05 00:38:07,736 [ scc.git] DEBUG 100f6ae Merge pull request #13 from jburel/build 2026-03-05 00:38:07,736 [ scc.git] DEBUG Calling 'git submodule status' 2026-03-05 00:38:07,775 [ scc.config] DEBUG Found remote.origin.url 2026-03-05 00:38:08,202 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload HTTP/1.1" 200 None 2026-03-05 00:38:08,681 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-03-05 00:38:09,097 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-03-05 00:38:09,522 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-03-05 00:38:09,962 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-03-05 00:38:09,963 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-03-05 00:38:10,001 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:38:10,002 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope 2026-03-05 00:38:10,002 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-03-05 00:38:10,004 [ scc.git] DEBUG Check current status 2026-03-05 00:38:10,004 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-03-05 00:38:10,006 [ scc.git] DEBUG 160d894 Fix display of code 2026-03-05 00:38:10,006 [ scc.git] DEBUG Calling 'git submodule status' 2026-03-05 00:38:10,045 [ scc.config] DEBUG Found remote.origin.url 2026-03-05 00:38:10,445 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope HTTP/1.1" 200 None 2026-03-05 00:38:10,911 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-03-05 00:38:11,327 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-03-05 00:38:11,752 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-03-05 00:38:12,168 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-03-05 00:38:12,169 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-03-05 00:38:12,207 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:38:12,208 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr 2026-03-05 00:38:12,208 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-03-05 00:38:12,210 [ scc.git] DEBUG Check current status 2026-03-05 00:38:12,210 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-03-05 00:38:12,212 [ scc.git] DEBUG 4e1e685 Merge pull request #23 from lubianat/patch-1 2026-03-05 00:38:12,212 [ scc.git] DEBUG Calling 'git submodule status' 2026-03-05 00:38:12,249 [ scc.config] DEBUG Found remote.origin.url 2026-03-05 00:38:12,249 [ scc.git] DEBUG Repository configuration: base-branch: main 2026-03-05 00:38:12,666 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr HTTP/1.1" 200 None 2026-03-05 00:38:13,140 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-03-05 00:38:13,555 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-03-05 00:38:13,966 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-03-05 00:38:14,385 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-03-05 00:38:14,386 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-03-05 00:38:14,423 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:38:14,423 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror 2026-03-05 00:38:14,424 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-03-05 00:38:14,426 [ scc.git] DEBUG Check current status 2026-03-05 00:38:14,426 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-03-05 00:38:14,428 [ scc.git] DEBUG 70b01ed Merge pull request #24 from jburel/build 2026-03-05 00:38:14,428 [ scc.git] DEBUG Calling 'git submodule status' 2026-03-05 00:38:14,466 [ scc.config] DEBUG Found remote.origin.url 2026-03-05 00:38:14,818 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-weberror HTTP/1.1" 301 197 Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 2026-03-05 00:38:14,819 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 2026-03-05 00:38:15,072 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/38373425 HTTP/1.1" 200 None 2026-03-05 00:38:15,534 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-03-05 00:38:15,967 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-03-05 00:38:16,404 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-03-05 00:38:16,821 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-03-05 00:38:16,822 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-03-05 00:38:16,861 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:38:16,862 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest 2026-03-05 00:38:16,862 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-03-05 00:38:16,864 [ scc.git] DEBUG Check current status 2026-03-05 00:38:16,864 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-03-05 00:38:16,866 [ scc.git] DEBUG 5bfef29 Merge pull request #36 from jburel/build 2026-03-05 00:38:16,866 [ scc.git] DEBUG Calling 'git submodule status' 2026-03-05 00:38:16,904 [ scc.config] DEBUG Found remote.origin.url 2026-03-05 00:38:17,247 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-webtest HTTP/1.1" 301 197 Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 2026-03-05 00:38:17,248 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 2026-03-05 00:38:17,516 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/25970383 HTTP/1.1" 200 None 2026-03-05 00:38:17,959 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-03-05 00:38:18,372 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-03-05 00:38:18,786 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-03-05 00:38:19,214 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-03-05 00:38:19,215 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-03-05 00:38:19,254 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:38:19,255 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway 2026-03-05 00:38:19,255 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-03-05 00:38:19,257 [ scc.git] DEBUG Check current status 2026-03-05 00:38:19,257 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-03-05 00:38:19,259 [ scc.git] DEBUG 7b5d64d Merge pull request #106 from dominikl/add_examples_2 2026-03-05 00:38:19,260 [ scc.git] DEBUG Calling 'git submodule status' 2026-03-05 00:38:19,298 [ scc.config] DEBUG Found remote.origin.url 2026-03-05 00:38:19,742 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway HTTP/1.1" 200 None 2026-03-05 00:38:20,203 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-03-05 00:38:20,652 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-03-05 00:38:21,071 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-03-05 00:38:21,487 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-03-05 00:38:21,488 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-03-05 00:38:21,526 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:38:21,526 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts 2026-03-05 00:38:21,526 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-03-05 00:38:21,528 [ scc.git] DEBUG Check current status 2026-03-05 00:38:21,529 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-03-05 00:38:21,531 [ scc.git] DEBUG 5b4d768 Bump version: 5.10.0 → 5.10.1.dev0 2026-03-05 00:38:21,531 [ scc.git] DEBUG Calling 'git submodule status' 2026-03-05 00:38:21,572 [ scc.config] DEBUG Found remote.origin.url 2026-03-05 00:38:21,572 [ scc.git] DEBUG Repository configuration: base-branch: develop 2026-03-05 00:38:21,910 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/scripts HTTP/1.1" 301 196 Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2026-03-05 00:38:21,911 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2026-03-05 00:38:22,165 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/4865545 HTTP/1.1" 200 None 2026-03-05 00:38:22,652 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-03-05 00:38:23,079 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-03-05 00:38:23,501 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-03-05 00:38:23,940 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-03-05 00:38:23,942 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-03-05 00:38:23,979 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:38:23,979 [ scc.git] DEBUG Resetting... 2026-03-05 00:38:23,979 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2026-03-05 00:38:23,987 [ scc.git] DEBUG HEAD is now at a35d020 merge master -Dorg -Snone 2026-03-05 00:38:23,987 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2026-03-05 00:38:24,038 [ scc.git] DEBUG Submodule path 'omero-cli-render': checked out 'ce6e13cfea3157cab0d00fde40f6cc8158946264' 2026-03-05 00:38:24,055 [ scc.git] DEBUG Submodule path 'omero-cli-zarr': checked out '11d35873542022d9638ede115d0dfab4652f8e62' 2026-03-05 00:38:24,091 [ scc.git] DEBUG Submodule path 'omero-figure': checked out '9cc36cde05bde4def7b62b07c2e9ae5f66712e96' 2026-03-05 00:38:24,109 [ scc.git] DEBUG Submodule path 'omero-iviewer': checked out '7a798ceeb3926d049d73788555fb63269a071052' 2026-03-05 00:38:24,124 [ scc.git] DEBUG Submodule path 'omero-metadata': checked out '3cd120cf6f10f71421a4db91fa87baba865c7997' 2026-03-05 00:38:24,141 [ scc.git] DEBUG Submodule path 'omero-rois': checked out 'bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9' 2026-03-05 00:38:24,155 [ scc.git] DEBUG Submodule path 'omero-test-infra': checked out 'cda3ec65052d6933052c8683d080677c6c33dc73' 2026-03-05 00:38:24,168 [ scc.git] DEBUG Submodule path 'omero-virtual-microscope': checked out 'deab81790f403bef598915b89b5300258b44a743' 2026-03-05 00:38:24,179 [ scc.git] DEBUG Submodule path 'omero-web-zarr': checked out '8f3c31388de8a7c44f18a6f0e20ea41d35fae041' 2026-03-05 00:38:24,203 [ scc.git] DEBUG Submodule path 'scripts': checked out '4b4c755af4ccf8a5e709548d1f8415fab48a4867' 2026-03-05 00:38:24,206 [ scc.git] DEBUG Check current status 2026-03-05 00:38:24,206 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-03-05 00:38:24,208 [ scc.git] DEBUG a35d020 merge master -Dorg -Snone 2026-03-05 00:38:24,209 [ scc.git] DEBUG Calling 'git submodule status' 2026-03-05 00:38:24,251 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master) 2026-03-05 00:38:24,254 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2026-03-05 00:38:24,257 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c) 2026-03-05 00:38:24,260 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587) 2026-03-05 00:38:24,263 [ scc.git] DEBUG 9cc36cde05bde4def7b62b07c2e9ae5f66712e96 omero-figure (v7.2.1-3-g9cc36cde) 2026-03-05 00:38:24,266 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2026-03-05 00:38:24,269 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2026-03-05 00:38:24,272 [ scc.git] DEBUG 7a798ceeb3926d049d73788555fb63269a071052 omero-iviewer (v0.16.0-14-g7a798ce) 2026-03-05 00:38:24,274 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2026-03-05 00:38:24,277 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c) 2026-03-05 00:38:24,280 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2026-03-05 00:38:24,282 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2026-03-05 00:38:24,286 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2026-03-05 00:38:24,288 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2026-03-05 00:38:24,291 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6) 2026-03-05 00:38:24,294 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2026-03-05 00:38:24,296 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2026-03-05 00:38:24,298 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313) 2026-03-05 00:38:24,301 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2026-03-05 00:38:24,303 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2026-03-05 00:38:24,306 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2026-03-05 00:38:24,309 [ scc.git] DEBUG 4b4c755af4ccf8a5e709548d1f8415fab48a4867 scripts (v5.9.0-1-g4b4c755) 2026-03-05 00:38:24,310 [ scc.merge] INFO Merging Pull Request(s) based on master 2026-03-05 00:38:24,310 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2026-03-05 00:38:24,310 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2026-03-05 00:38:24,310 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2026-03-05 00:38:24,310 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2026-03-05 00:38:24,310 [ scc.merge] INFO Excluding Pull Request(s) without successful status 2026-03-05 00:38:24,310 [ scc.repo] DEBUG ## PRs found: 2026-03-05 00:38:24,567 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/pulls HTTP/1.1" 200 None 2026-03-05 00:38:25,108 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/433 HTTP/1.1" 200 None 2026-03-05 00:38:25,109 [ scc.repo] DEBUG # ... Include label: dependencies 2026-03-05 00:38:25,698 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74 HTTP/1.1" 200 None 2026-03-05 00:38:26,163 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-03-05 00:38:26,616 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74 HTTP/1.1" 200 None 2026-03-05 00:38:27,052 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/6fd5dc72efc90d7f749b332dba3f903414852d74?per_page=1 HTTP/1.1" 200 2 2026-03-05 00:38:27,053 [ scc.repo] DEBUG - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2026-03-05 00:38:27,579 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/432 HTTP/1.1" 200 None 2026-03-05 00:38:27,580 [ scc.repo] DEBUG # ... Include label: dependencies 2026-03-05 00:38:28,200 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51 HTTP/1.1" 200 None 2026-03-05 00:38:28,667 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-03-05 00:38:29,117 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51 HTTP/1.1" 200 None 2026-03-05 00:38:29,539 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/25bf90a85a7e0945e652f9d78050c8c4860acb51?per_page=1 HTTP/1.1" 200 2 2026-03-05 00:38:29,540 [ scc.repo] DEBUG - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2026-03-05 00:38:30,086 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/429 HTTP/1.1" 200 None 2026-03-05 00:38:30,087 [ scc.repo] DEBUG # ... Include label: dependencies 2026-03-05 00:38:30,732 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2 HTTP/1.1" 200 None 2026-03-05 00:38:31,196 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-03-05 00:38:31,642 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2 HTTP/1.1" 200 None 2026-03-05 00:38:32,086 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/3062fb487d55aef3602ecee795b63ccb73d1f8e2?per_page=1 HTTP/1.1" 200 2 2026-03-05 00:38:32,086 [ scc.repo] DEBUG - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2026-03-05 00:38:32,086 [ scc.repo] DEBUG ## Branches found: 2026-03-05 00:38:32,086 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:38:32,087 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:38:32,089 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-03-05 00:38:32,091 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-03-05 00:38:32,091 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-03-05 00:38:32,094 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-03-05 00:38:32,097 [ scc.git] DEBUG Already up to date. 2026-03-05 00:38:32,097 [ scc.git] DEBUG Calling 'git fetch origin pull/429/head' 2026-03-05 00:38:32,486 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-03-05 00:38:32,486 [ scc.git] DEBUG * branch refs/pull/429/head -> FETCH_HEAD 2026-03-05 00:38:32,490 [ scc.git] DEBUG Calling 'git fetch origin pull/432/head' 2026-03-05 00:38:32,827 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-03-05 00:38:32,827 [ scc.git] DEBUG * branch refs/pull/432/head -> FETCH_HEAD 2026-03-05 00:38:32,831 [ scc.git] DEBUG Calling 'git fetch origin pull/433/head' 2026-03-05 00:38:33,261 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-03-05 00:38:33,261 [ scc.git] DEBUG * branch refs/pull/433/head -> FETCH_HEAD 2026-03-05 00:38:33,265 [ scc.git] DEBUG ## Unique users: [] 2026-03-05 00:38:33,265 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:38:33,265 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:38:33,267 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2026-03-05 00:38:33,269 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:38:33,272 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 429 (Bump scripts from `312afbe` to `4b4c755`) 3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2026-03-05 00:38:33,274 [ scc.git] DEBUG Already up to date. 2026-03-05 00:38:33,437 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:38:33,437 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25bf90a85a7e0945e652f9d78050c8c4860acb51' 2026-03-05 00:38:33,440 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:38:33,442 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 432 (Bump omero-figure from `fb316a7` to `9cc36cd`) 25bf90a85a7e0945e652f9d78050c8c4860acb51' 2026-03-05 00:38:33,445 [ scc.git] DEBUG Already up to date. 2026-03-05 00:38:33,847 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:38:33,847 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6fd5dc72efc90d7f749b332dba3f903414852d74' 2026-03-05 00:38:33,850 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:38:33,852 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 433 (Bump omero-iviewer from `b4102d4` to `7a798ce`) 6fd5dc72efc90d7f749b332dba3f903414852d74' 2026-03-05 00:38:33,855 [ scc.git] DEBUG Already up to date. 2026-03-05 00:38:34,277 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:38:34,278 [ scc.git] DEBUG Calling 'git submodule update' 2026-03-05 00:38:34,328 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:38:34,328 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:38:34,330 [ scc.repo] DEBUG ## PRs found: 2026-03-05 00:38:34,708 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/minimal-omero-client/pulls HTTP/1.1" 200 2 2026-03-05 00:38:34,709 [ scc.repo] DEBUG ## Branches found: 2026-03-05 00:38:34,709 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client 2026-03-05 00:38:34,709 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:38:34,709 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:38:34,712 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-03-05 00:38:34,714 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-03-05 00:38:34,714 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-03-05 00:38:34,717 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-03-05 00:38:34,720 [ scc.git] DEBUG Already up to date. 2026-03-05 00:38:34,720 [ scc.git] DEBUG ## Unique users: [] 2026-03-05 00:38:34,720 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:38:34,720 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:38:34,723 [ scc.git] DEBUG Calling 'git submodule update' 2026-03-05 00:38:34,760 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:38:34,760 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:38:34,763 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-03-05 00:38:34,800 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-03-05 00:38:34,803 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa53cb34950> has no local changes 2026-03-05 00:38:34,803 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/minimal-omero-client Already up to date. Generated by OMERO-plugins-push#79 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/)' 2026-03-05 00:38:34,809 [ scc.git] DEBUG [detached HEAD 924e8b8] merge master -Dorg -Ssuccess-only 2026-03-05 00:38:34,810 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:38:34,810 [ scc.repo] DEBUG ## PRs found: 2026-03-05 00:38:35,261 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/pulls HTTP/1.1" 200 None 2026-03-05 00:38:35,892 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/29 HTTP/1.1" 200 None 2026-03-05 00:38:35,893 [ scc.repo] DEBUG # ... Include label: dependencies 2026-03-05 00:38:36,570 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4 HTTP/1.1" 200 None 2026-03-05 00:38:37,124 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-03-05 00:38:37,658 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-03-05 00:38:38,100 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4 HTTP/1.1" 200 None 2026-03-05 00:38:38,538 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/statuses/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4?per_page=1 HTTP/1.1" 200 2 2026-03-05 00:38:38,539 [ scc.repo] DEBUG - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-03-05 00:38:39,133 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/18 HTTP/1.1" 200 None 2026-03-05 00:38:39,623 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/18/comments HTTP/1.1" 200 None 2026-03-05 00:38:39,624 [ scc.repo] DEBUG ## Branches found: 2026-03-05 00:38:39,624 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate 2026-03-05 00:38:39,624 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:38:39,624 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:38:39,626 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-03-05 00:38:39,629 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-03-05 00:38:39,629 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-03-05 00:38:39,631 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-03-05 00:38:39,634 [ scc.git] DEBUG Already up to date. 2026-03-05 00:38:39,634 [ scc.git] DEBUG Calling 'git fetch origin pull/29/head' 2026-03-05 00:38:39,906 [ scc.git] DEBUG From https://github.com/ome/omero-cli-duplicate 2026-03-05 00:38:39,907 [ scc.git] DEBUG * branch refs/pull/29/head -> FETCH_HEAD 2026-03-05 00:38:39,910 [ scc.git] DEBUG ## Unique users: [] 2026-03-05 00:38:39,910 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:38:39,910 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:38:39,912 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4' 2026-03-05 00:38:39,915 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:38:39,917 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 29 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4' 2026-03-05 00:38:39,923 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-03-05 00:38:39,925 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-03-05 00:38:39,925 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-03-05 00:38:40,067 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:38:40,068 [ scc.git] DEBUG Calling 'git submodule update' 2026-03-05 00:38:40,104 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:38:40,104 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:38:40,106 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-03-05 00:38:40,141 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-03-05 00:38:40,144 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa53cfad910> has no local changes 2026-03-05 00:38:40,144 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-cli-duplicate Excluded PRs: - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment) Already up to date. Merged PRs: - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#79 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/)' 2026-03-05 00:38:40,149 [ scc.git] DEBUG [detached HEAD b791199] merge master -Dorg -Ssuccess-only 2026-03-05 00:38:40,150 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:38:40,150 [ scc.repo] DEBUG ## PRs found: 2026-03-05 00:38:40,626 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls HTTP/1.1" 200 None 2026-03-05 00:38:41,173 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/59 HTTP/1.1" 200 None 2026-03-05 00:38:41,650 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/59/comments HTTP/1.1" 200 None 2026-03-05 00:38:42,172 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99 HTTP/1.1" 200 None 2026-03-05 00:38:42,703 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-03-05 00:38:43,175 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-03-05 00:38:43,735 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99 HTTP/1.1" 200 None 2026-03-05 00:38:44,146 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/statuses/38c5fff61b004cd2efee36b3f5c034d2b8f01c99?per_page=1 HTTP/1.1" 200 2 2026-03-05 00:38:44,146 [ scc.repo] DEBUG - PR 59 will-moore 'Apply settings to Plate' 2026-03-05 00:38:44,670 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/52 HTTP/1.1" 200 None 2026-03-05 00:38:45,137 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/52/comments HTTP/1.1" 200 None 2026-03-05 00:38:45,138 [ scc.repo] DEBUG ## Branches found: 2026-03-05 00:38:45,138 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render 2026-03-05 00:38:45,138 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:38:45,138 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:38:45,141 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-03-05 00:38:45,143 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-03-05 00:38:45,143 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-03-05 00:38:45,145 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-03-05 00:38:45,153 [ scc.git] DEBUG Updating ce6e13c..68b7303 2026-03-05 00:38:45,835 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/74 HTTP/1.1" 200 None 2026-03-05 00:38:46,555 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/75 HTTP/1.1" 200 None 2026-03-05 00:38:47,218 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/71 HTTP/1.1" 200 None 2026-03-05 00:38:47,939 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/69 HTTP/1.1" 200 None 2026-03-05 00:38:47,940 [ scc.git] DEBUG Calling 'git fetch origin pull/59/head' 2026-03-05 00:38:48,329 [ scc.git] DEBUG From https://github.com/ome/omero-cli-render 2026-03-05 00:38:48,329 [ scc.git] DEBUG * branch refs/pull/59/head -> FETCH_HEAD 2026-03-05 00:38:48,333 [ scc.git] DEBUG ## Unique users: [] 2026-03-05 00:38:48,334 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:38:48,334 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:38:48,336 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38c5fff61b004cd2efee36b3f5c034d2b8f01c99' 2026-03-05 00:38:48,340 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:38:48,342 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 59 (Apply settings to Plate) 38c5fff61b004cd2efee36b3f5c034d2b8f01c99' 2026-03-05 00:38:48,349 [ scc.git] DEBUG Auto-merging src/omero_cli_render.py 2026-03-05 00:38:48,350 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-03-05 00:38:48,353 [ scc.git] DEBUG src/omero_cli_render.py | 170 ++++++++++++++++++++++++++++-------------------- 2026-03-05 00:38:48,353 [ scc.git] DEBUG 1 file changed, 101 insertions(+), 69 deletions(-) 2026-03-05 00:38:48,545 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:38:48,546 [ scc.git] DEBUG Calling 'git submodule update' 2026-03-05 00:38:48,583 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:38:48,583 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:38:48,585 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-03-05 00:38:48,620 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-03-05 00:38:48,623 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa53ca6df10> has no local changes 2026-03-05 00:38:48,624 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-cli-render Excluded PRs: - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft) Updating ce6e13c..68b7303 Previously merged: - PR 74 jburel 'Replace manual changelog by automated GH release step' - PR 75 jburel 'Sort the new channels to ensure settings are set' - PR 71 dominikl 'Escape slash character in image names' - PR 69 dominikl 'Fix help text for impo/export commands' Merged PRs: - PR 59 will-moore 'Apply settings to Plate' Generated by OMERO-plugins-push#79 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/)' 2026-03-05 00:38:48,629 [ scc.git] DEBUG [detached HEAD 2adbed6] merge master -Dorg -Ssuccess-only 2026-03-05 00:38:48,629 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:38:48,630 [ scc.repo] DEBUG ## PRs found: 2026-03-05 00:38:49,157 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls HTTP/1.1" 200 None 2026-03-05 00:38:49,712 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/182 HTTP/1.1" 200 None 2026-03-05 00:38:50,204 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/182/comments HTTP/1.1" 200 None 2026-03-05 00:38:50,758 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac HTTP/1.1" 200 None 2026-03-05 00:38:51,345 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-03-05 00:38:51,843 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-03-05 00:38:52,298 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac HTTP/1.1" 200 None 2026-03-05 00:38:52,717 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac?per_page=1 HTTP/1.1" 200 None 2026-03-05 00:38:53,185 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac HTTP/1.1" 200 None 2026-03-05 00:38:53,630 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac/status HTTP/1.1" 200 None 2026-03-05 00:38:53,631 [ scc.repo] DEBUG - PR 182 will-moore 'Revert "Remove support for Plate import"' 2026-03-05 00:38:54,120 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/181 HTTP/1.1" 200 None 2026-03-05 00:38:54,628 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/181/comments HTTP/1.1" 200 None 2026-03-05 00:38:55,111 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/178 HTTP/1.1" 200 None 2026-03-05 00:38:55,621 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/178/comments HTTP/1.1" 200 None 2026-03-05 00:38:56,186 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae HTTP/1.1" 200 None 2026-03-05 00:38:56,694 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-03-05 00:38:57,216 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-03-05 00:38:57,737 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae HTTP/1.1" 200 None 2026-03-05 00:38:58,249 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/f99a6a6869bf6259376adaea157f24955c9aa3ae?per_page=1 HTTP/1.1" 200 None 2026-03-05 00:38:58,703 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae HTTP/1.1" 200 None 2026-03-05 00:38:59,228 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae/status HTTP/1.1" 200 None 2026-03-05 00:38:59,228 [ scc.repo] DEBUG - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' 2026-03-05 00:38:59,724 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/174 HTTP/1.1" 200 None 2026-03-05 00:39:00,207 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/174/comments HTTP/1.1" 200 None 2026-03-05 00:39:00,741 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c HTTP/1.1" 200 None 2026-03-05 00:39:01,268 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-03-05 00:39:01,794 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-03-05 00:39:02,347 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c HTTP/1.1" 200 None 2026-03-05 00:39:02,903 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/e795ce506487fad5c1184c909aaa1dab9a30401c?per_page=1 HTTP/1.1" 200 None 2026-03-05 00:39:03,351 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c HTTP/1.1" 200 None 2026-03-05 00:39:03,805 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c/status HTTP/1.1" 200 None 2026-03-05 00:39:03,806 [ scc.repo] DEBUG - PR 174 will-moore 'Skip wells' 2026-03-05 00:39:04,263 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/170 HTTP/1.1" 200 None 2026-03-05 00:39:04,740 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/167 HTTP/1.1" 200 None 2026-03-05 00:39:05,263 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/167/comments HTTP/1.1" 200 None 2026-03-05 00:39:05,782 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/166 HTTP/1.1" 200 None 2026-03-05 00:39:06,264 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/162 HTTP/1.1" 200 None 2026-03-05 00:39:06,746 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/123 HTTP/1.1" 200 None 2026-03-05 00:39:07,265 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/123/comments HTTP/1.1" 200 None 2026-03-05 00:39:07,744 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/256245946/issues/123/comments?page=2 HTTP/1.1" 200 None 2026-03-05 00:39:07,745 [ scc.repo] DEBUG ## Branches found: 2026-03-05 00:39:07,746 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr 2026-03-05 00:39:07,746 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:39:07,746 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:39:07,748 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-03-05 00:39:07,751 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-03-05 00:39:07,751 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-03-05 00:39:07,754 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-03-05 00:39:07,767 [ scc.git] DEBUG Updating 11d3587..9f844b8 2026-03-05 00:39:08,553 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/172 HTTP/1.1" 200 None 2026-03-05 00:39:09,241 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/192 HTTP/1.1" 200 None 2026-03-05 00:39:10,262 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/186 HTTP/1.1" 200 None 2026-03-05 00:39:11,047 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/187 HTTP/1.1" 200 None 2026-03-05 00:39:11,742 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/180 HTTP/1.1" 200 None 2026-03-05 00:39:12,422 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/179 HTTP/1.1" 200 None 2026-03-05 00:39:13,081 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/177 HTTP/1.1" 200 None 2026-03-05 00:39:13,830 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/175 HTTP/1.1" 200 None 2026-03-05 00:39:14,544 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/147 HTTP/1.1" 200 None 2026-03-05 00:39:15,344 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/173 HTTP/1.1" 200 None 2026-03-05 00:39:16,036 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/171 HTTP/1.1" 200 None 2026-03-05 00:39:16,777 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/168 HTTP/1.1" 200 None 2026-03-05 00:39:16,778 [ scc.git] DEBUG Calling 'git fetch origin pull/174/head' 2026-03-05 00:39:17,262 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr 2026-03-05 00:39:17,262 [ scc.git] DEBUG * branch refs/pull/174/head -> FETCH_HEAD 2026-03-05 00:39:17,267 [ scc.git] DEBUG Calling 'git fetch origin pull/178/head' 2026-03-05 00:39:17,725 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr 2026-03-05 00:39:17,725 [ scc.git] DEBUG * branch refs/pull/178/head -> FETCH_HEAD 2026-03-05 00:39:17,729 [ scc.git] DEBUG Calling 'git fetch origin pull/182/head' 2026-03-05 00:39:18,157 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr 2026-03-05 00:39:18,157 [ scc.git] DEBUG * branch refs/pull/182/head -> FETCH_HEAD 2026-03-05 00:39:18,162 [ scc.git] DEBUG ## Unique users: [] 2026-03-05 00:39:18,162 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:39:18,162 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:39:18,164 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...e795ce506487fad5c1184c909aaa1dab9a30401c' 2026-03-05 00:39:18,168 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:39:18,170 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 174 (Skip wells) e795ce506487fad5c1184c909aaa1dab9a30401c' 2026-03-05 00:39:18,182 [ scc.git] DEBUG Auto-merging README.rst 2026-03-05 00:39:18,182 [ scc.git] DEBUG Auto-merging src/omero_zarr/cli.py 2026-03-05 00:39:18,182 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/cli.py 2026-03-05 00:39:18,182 [ scc.git] DEBUG Auto-merging src/omero_zarr/masks.py 2026-03-05 00:39:18,182 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/masks.py 2026-03-05 00:39:18,182 [ scc.git] DEBUG Auto-merging src/omero_zarr/raw_pixels.py 2026-03-05 00:39:18,182 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/raw_pixels.py 2026-03-05 00:39:18,182 [ scc.git] DEBUG Auto-merging src/omero_zarr/util.py 2026-03-05 00:39:18,182 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/util.py 2026-03-05 00:39:18,182 [ scc.git] DEBUG Auto-merging test/integration/clitest/test_export.py 2026-03-05 00:39:18,182 [ scc.git] DEBUG CONFLICT (content): Merge conflict in test/integration/clitest/test_export.py 2026-03-05 00:39:18,182 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-03-05 00:39:18,183 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-03-05 00:39:18,186 [ scc.git] DEBUG Calling 'git reset --hard 9f844b877d8e19e42a69d7ba43f7dc086680fbec' 2026-03-05 00:39:18,190 [ scc.git] DEBUG HEAD is now at 9f844b8 Bump version: 0.8.0 → 0.8.1.dev0 2026-03-05 00:39:18,358 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:39:18,358 [ scc.git] DEBUG Calling 'git merge-base 9f844b877d8e19e42a69d7ba43f7dc086680fbec e795ce506487fad5c1184c909aaa1dab9a30401c' 2026-03-05 00:39:18,362 [ scc.git] DEBUG Calling 'git diff --name-only 37ea7000309b4f8b87c5122c138fb59b17ecf86b..9f844b877d8e19e42a69d7ba43f7dc086680fbec' 2026-03-05 00:39:18,365 [ scc.git] INFO - PR 174 will-moore 'Skip wells' Conflicting PR. Removed from build [OMERO-plugins-push#79](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/consoleText) for more details. Possible conflicts: - Upstream changes - src/omero_zarr/cli.py - src/omero_zarr/masks.py - test/integration/clitest/test_export.py - src/omero_zarr/raw_pixels.py - src/omero_zarr/util.py --conflicts 2026-03-05 00:39:18,367 [ scc.config] DEBUG Found github.token 2026-03-05 00:39:18,367 [ scc.git] DEBUG Not adding comment to issue #174, already --conflicts. 2026-03-05 00:39:18,367 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...f99a6a6869bf6259376adaea157f24955c9aa3ae' 2026-03-05 00:39:18,370 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:39:18,372 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 178 (Fix export of masks with multi-theC as multi-channel labels) f99a6a6869bf6259376adaea157f24955c9aa3ae' 2026-03-05 00:39:18,382 [ scc.git] DEBUG Auto-merging src/omero_zarr/masks.py 2026-03-05 00:39:18,382 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/masks.py 2026-03-05 00:39:18,382 [ scc.git] DEBUG Auto-merging test/integration/clitest/test_export.py 2026-03-05 00:39:18,382 [ scc.git] DEBUG CONFLICT (content): Merge conflict in test/integration/clitest/test_export.py 2026-03-05 00:39:18,382 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-03-05 00:39:18,383 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-03-05 00:39:18,385 [ scc.git] DEBUG Calling 'git reset --hard 9f844b877d8e19e42a69d7ba43f7dc086680fbec' 2026-03-05 00:39:18,390 [ scc.git] DEBUG HEAD is now at 9f844b8 Bump version: 0.8.0 → 0.8.1.dev0 2026-03-05 00:39:18,755 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:39:18,755 [ scc.git] DEBUG Calling 'git merge-base 9f844b877d8e19e42a69d7ba43f7dc086680fbec f99a6a6869bf6259376adaea157f24955c9aa3ae' 2026-03-05 00:39:18,760 [ scc.git] DEBUG Calling 'git diff --name-only 9530c10ba9823fcba6b39139987bf4bcd4a60179..9f844b877d8e19e42a69d7ba43f7dc086680fbec' 2026-03-05 00:39:18,763 [ scc.git] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' Conflicting PR. Removed from build [OMERO-plugins-push#79](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/consoleText) for more details. Possible conflicts: - PR #174 will-moore 'Skip wells' - src/omero_zarr/masks.py - test/integration/clitest/test_export.py - Upstream changes - src/omero_zarr/masks.py - test/integration/clitest/test_export.py --conflicts 2026-03-05 00:39:18,766 [ scc.config] DEBUG Found github.token 2026-03-05 00:39:18,766 [ scc.git] DEBUG Not adding comment to issue #178, already --conflicts. 2026-03-05 00:39:18,766 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac' 2026-03-05 00:39:18,769 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:39:18,772 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 182 (Revert "Remove support for Plate import") cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac' 2026-03-05 00:39:18,782 [ scc.git] DEBUG Auto-merging src/omero_zarr/cli.py 2026-03-05 00:39:18,782 [ scc.git] DEBUG Auto-merging src/omero_zarr/zarr_import.py 2026-03-05 00:39:18,782 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/zarr_import.py 2026-03-05 00:39:18,782 [ scc.git] DEBUG Auto-merging test/integration/clitest/test_import.py 2026-03-05 00:39:18,782 [ scc.git] DEBUG CONFLICT (content): Merge conflict in test/integration/clitest/test_import.py 2026-03-05 00:39:18,782 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-03-05 00:39:18,782 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-03-05 00:39:18,785 [ scc.git] DEBUG Calling 'git reset --hard 9f844b877d8e19e42a69d7ba43f7dc086680fbec' 2026-03-05 00:39:18,790 [ scc.git] DEBUG HEAD is now at 9f844b8 Bump version: 0.8.0 → 0.8.1.dev0 2026-03-05 00:39:19,157 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:39:19,157 [ scc.git] DEBUG Calling 'git merge-base 9f844b877d8e19e42a69d7ba43f7dc086680fbec cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac' 2026-03-05 00:39:19,161 [ scc.git] DEBUG Calling 'git diff --name-only 37ea7000309b4f8b87c5122c138fb59b17ecf86b..9f844b877d8e19e42a69d7ba43f7dc086680fbec' 2026-03-05 00:39:19,164 [ scc.git] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"' Conflicting PR. Removed from build [OMERO-plugins-push#79](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/consoleText) for more details. Possible conflicts: - Upstream changes - src/omero_zarr/zarr_import.py - test/integration/clitest/test_import.py --conflicts 2026-03-05 00:39:19,166 [ scc.config] DEBUG Found github.token 2026-03-05 00:39:19,166 [ scc.git] DEBUG Not adding comment to issue #182, already --conflicts. 2026-03-05 00:39:19,166 [ scc.git] DEBUG Calling 'git submodule update' 2026-03-05 00:39:19,202 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:39:19,203 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:39:19,205 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-03-05 00:39:19,239 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-03-05 00:39:19,243 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa53ca20bd0> has no local changes 2026-03-05 00:39:19,243 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-cli-zarr Excluded PRs: - PR 181 will-moore 'Add labels support for import' (exclude comment) - PR 170 will-moore 'Use ome zarr models py' (stage: draft) - PR 167 dominikl 'Add extinfo command' (stage: draft) - PR 166 will-moore 'Downsample scale option' (stage: draft) - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment) Updating 11d3587..9f844b8 Previously merged: - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' - PR 192 jburel 'Set Omero pixel size' - PR 186 jburel 'Create release from tag' - PR 187 dominikl 'Fix target-by-name option' - PR 180 will-moore 'Import command' - PR 179 will-moore 'Changelog 0.6.0' - PR 177 jburel 'Replace fromstring by frombuffer' - PR 175 will-moore 'Pin ome-zarr-py <0.12.0' - PR 147 will-moore 'Name option' - PR 173 will-moore 'Add test_export_plate_polygons()' - PR 171 will-moore 'Initial addition of integration tests' - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Conflicting PRs (not included): - PR 174 will-moore 'Skip wells' - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' - PR 182 will-moore 'Revert "Remove support for Plate import"' Generated by OMERO-plugins-push#79 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/)' 2026-03-05 00:39:19,250 [ scc.git] DEBUG [detached HEAD 5628371] merge master -Dorg -Ssuccess-only 2026-03-05 00:39:19,250 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:39:19,250 [ scc.repo] DEBUG ## PRs found: 2026-03-05 00:39:19,756 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls HTTP/1.1" 200 None 2026-03-05 00:39:20,266 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/673 HTTP/1.1" 200 None 2026-03-05 00:39:20,266 [ scc.repo] DEBUG # ... Include label: dependencies 2026-03-05 00:39:20,793 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/0f229bda6445f7eca0560d1311a116db20c21e9d HTTP/1.1" 200 None 2026-03-05 00:39:21,284 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/0f229bda6445f7eca0560d1311a116db20c21e9d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-03-05 00:39:21,774 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/0f229bda6445f7eca0560d1311a116db20c21e9d/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-03-05 00:39:22,244 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/0f229bda6445f7eca0560d1311a116db20c21e9d HTTP/1.1" 200 None 2026-03-05 00:39:22,667 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/0f229bda6445f7eca0560d1311a116db20c21e9d?per_page=1 HTTP/1.1" 200 2 2026-03-05 00:39:22,668 [ scc.repo] DEBUG - PR 673 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.1' 2026-03-05 00:39:23,141 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/672 HTTP/1.1" 200 None 2026-03-05 00:39:23,596 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/672/comments HTTP/1.1" 200 None 2026-03-05 00:39:24,106 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/70872e138ecc3b909b3fc8ff38c34b417fde4f3c HTTP/1.1" 200 None 2026-03-05 00:39:24,641 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/70872e138ecc3b909b3fc8ff38c34b417fde4f3c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-03-05 00:39:25,134 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/70872e138ecc3b909b3fc8ff38c34b417fde4f3c/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-03-05 00:39:25,606 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/70872e138ecc3b909b3fc8ff38c34b417fde4f3c HTTP/1.1" 200 None 2026-03-05 00:39:26,027 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/70872e138ecc3b909b3fc8ff38c34b417fde4f3c?per_page=1 HTTP/1.1" 200 2 2026-03-05 00:39:26,027 [ scc.repo] DEBUG - PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues' 2026-03-05 00:39:26,525 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/671 HTTP/1.1" 200 None 2026-03-05 00:39:26,972 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/671/comments HTTP/1.1" 200 None 2026-03-05 00:39:26,972 [ scc.repo] DEBUG # ... Include label: dependencies 2026-03-05 00:39:27,556 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/db9437c6ec973c7d1a316a1331eac191cf2a2db6 HTTP/1.1" 200 None 2026-03-05 00:39:28,026 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/db9437c6ec973c7d1a316a1331eac191cf2a2db6/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-03-05 00:39:28,579 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/db9437c6ec973c7d1a316a1331eac191cf2a2db6/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-03-05 00:39:29,109 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/db9437c6ec973c7d1a316a1331eac191cf2a2db6 HTTP/1.1" 200 None 2026-03-05 00:39:29,557 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/db9437c6ec973c7d1a316a1331eac191cf2a2db6?per_page=1 HTTP/1.1" 200 2 2026-03-05 00:39:29,558 [ scc.repo] DEBUG - PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8' 2026-03-05 00:39:30,030 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/669 HTTP/1.1" 200 None 2026-03-05 00:39:30,548 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/666 HTTP/1.1" 200 None 2026-03-05 00:39:30,998 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/666/comments HTTP/1.1" 200 None 2026-03-05 00:39:31,516 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/870a04c282c68091e2e59c8bc04247f7419d05e4 HTTP/1.1" 200 None 2026-03-05 00:39:31,962 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/870a04c282c68091e2e59c8bc04247f7419d05e4/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-03-05 00:39:32,411 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/870a04c282c68091e2e59c8bc04247f7419d05e4 HTTP/1.1" 200 None 2026-03-05 00:39:32,837 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/870a04c282c68091e2e59c8bc04247f7419d05e4?per_page=1 HTTP/1.1" 200 2 2026-03-05 00:39:32,837 [ scc.repo] DEBUG - PR 666 will-moore 'Standalone app' 2026-03-05 00:39:33,360 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/663 HTTP/1.1" 200 None 2026-03-05 00:39:33,860 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/663/comments HTTP/1.1" 200 None 2026-03-05 00:39:34,470 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/2f986f52ea19f9209b6a83450286bc9f5dac72bb HTTP/1.1" 200 None 2026-03-05 00:39:34,979 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/2f986f52ea19f9209b6a83450286bc9f5dac72bb/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-03-05 00:39:35,473 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/2f986f52ea19f9209b6a83450286bc9f5dac72bb/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-03-05 00:39:36,114 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/2f986f52ea19f9209b6a83450286bc9f5dac72bb HTTP/1.1" 200 None 2026-03-05 00:39:36,538 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/2f986f52ea19f9209b6a83450286bc9f5dac72bb?per_page=1 HTTP/1.1" 200 2 2026-03-05 00:39:36,538 [ scc.repo] DEBUG - PR 663 will-moore 'Zarr' 2026-03-05 00:39:37,026 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/662 HTTP/1.1" 200 None 2026-03-05 00:39:37,487 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/662/comments HTTP/1.1" 200 None 2026-03-05 00:39:38,015 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/cfaed4dabe5ddc7f27de211c1a2630942a55a775 HTTP/1.1" 200 None 2026-03-05 00:39:38,528 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/cfaed4dabe5ddc7f27de211c1a2630942a55a775/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-03-05 00:39:39,034 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/cfaed4dabe5ddc7f27de211c1a2630942a55a775/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-03-05 00:39:39,523 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/cfaed4dabe5ddc7f27de211c1a2630942a55a775 HTTP/1.1" 200 None 2026-03-05 00:39:39,956 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/cfaed4dabe5ddc7f27de211c1a2630942a55a775?per_page=1 HTTP/1.1" 200 2 2026-03-05 00:39:39,956 [ scc.repo] DEBUG - PR 662 will-moore 'Export script handles OME-zarr images' 2026-03-05 00:39:40,487 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/652 HTTP/1.1" 200 None 2026-03-05 00:39:40,938 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/652/comments HTTP/1.1" 200 None 2026-03-05 00:39:40,939 [ scc.repo] DEBUG # ... Include label: include 2026-03-05 00:39:41,464 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/e4dd3031a6f8b0295d88c5a27d510e2ead252234 HTTP/1.1" 200 None 2026-03-05 00:39:41,944 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/e4dd3031a6f8b0295d88c5a27d510e2ead252234/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-03-05 00:39:42,437 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/e4dd3031a6f8b0295d88c5a27d510e2ead252234/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-03-05 00:39:42,953 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/e4dd3031a6f8b0295d88c5a27d510e2ead252234 HTTP/1.1" 200 None 2026-03-05 00:39:43,380 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/e4dd3031a6f8b0295d88c5a27d510e2ead252234?per_page=1 HTTP/1.1" 200 2 2026-03-05 00:39:43,380 [ scc.repo] DEBUG - PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 ' 2026-03-05 00:39:43,900 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/641 HTTP/1.1" 200 None 2026-03-05 00:39:44,382 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/641/comments HTTP/1.1" 200 None 2026-03-05 00:39:44,384 [ scc.repo] DEBUG ## Branches found: 2026-03-05 00:39:44,384 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure 2026-03-05 00:39:44,384 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:39:44,384 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:39:44,387 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-03-05 00:39:44,390 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-03-05 00:39:44,390 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-03-05 00:39:44,394 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-03-05 00:39:44,433 [ scc.git] DEBUG Updating 9cc36cde..186921ea 2026-03-05 00:39:45,044 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/667 HTTP/1.1" 200 None 2026-03-05 00:39:45,724 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/665 HTTP/1.1" 200 None 2026-03-05 00:39:46,467 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/656 HTTP/1.1" 200 None 2026-03-05 00:39:47,097 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/670 HTTP/1.1" 200 None 2026-03-05 00:39:47,816 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/664 HTTP/1.1" 200 None 2026-03-05 00:39:48,502 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/654 HTTP/1.1" 200 None 2026-03-05 00:39:49,228 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/648 HTTP/1.1" 200 None 2026-03-05 00:39:49,960 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/661 HTTP/1.1" 200 None 2026-03-05 00:39:52,137 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/649 HTTP/1.1" 200 None 2026-03-05 00:39:52,820 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/657 HTTP/1.1" 200 None 2026-03-05 00:39:53,696 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/637 HTTP/1.1" 200 None 2026-03-05 00:39:54,503 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/600 HTTP/1.1" 200 None 2026-03-05 00:39:55,186 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/653 HTTP/1.1" 200 None 2026-03-05 00:39:55,902 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/651 HTTP/1.1" 200 None 2026-03-05 00:39:56,570 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/650 HTTP/1.1" 200 None 2026-03-05 00:39:57,229 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/647 HTTP/1.1" 200 None 2026-03-05 00:39:57,969 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/610 HTTP/1.1" 200 None 2026-03-05 00:39:58,632 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/644 HTTP/1.1" 200 None 2026-03-05 00:39:59,464 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/646 HTTP/1.1" 200 None 2026-03-05 00:40:00,151 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/612 HTTP/1.1" 200 None 2026-03-05 00:40:00,817 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/630 HTTP/1.1" 200 None 2026-03-05 00:40:01,602 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/616 HTTP/1.1" 200 None 2026-03-05 00:40:02,374 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/605 HTTP/1.1" 200 None 2026-03-05 00:40:03,067 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/638 HTTP/1.1" 200 None 2026-03-05 00:40:03,707 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/633 HTTP/1.1" 200 None 2026-03-05 00:40:04,340 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/635 HTTP/1.1" 200 None 2026-03-05 00:40:05,132 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/623 HTTP/1.1" 200 None 2026-03-05 00:40:05,818 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/631 HTTP/1.1" 200 None 2026-03-05 00:40:05,820 [ scc.git] DEBUG Calling 'git fetch origin pull/652/head' 2026-03-05 00:40:06,644 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2026-03-05 00:40:06,644 [ scc.git] DEBUG * branch refs/pull/652/head -> FETCH_HEAD 2026-03-05 00:40:06,648 [ scc.git] DEBUG Calling 'git fetch origin pull/662/head' 2026-03-05 00:40:06,915 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2026-03-05 00:40:06,915 [ scc.git] DEBUG * branch refs/pull/662/head -> FETCH_HEAD 2026-03-05 00:40:06,919 [ scc.git] DEBUG Calling 'git fetch origin pull/663/head' 2026-03-05 00:40:07,295 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2026-03-05 00:40:07,295 [ scc.git] DEBUG * branch refs/pull/663/head -> FETCH_HEAD 2026-03-05 00:40:07,299 [ scc.git] DEBUG Calling 'git fetch origin pull/666/head' 2026-03-05 00:40:07,568 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2026-03-05 00:40:07,568 [ scc.git] DEBUG * branch refs/pull/666/head -> FETCH_HEAD 2026-03-05 00:40:07,575 [ scc.git] DEBUG Calling 'git fetch origin pull/671/head' 2026-03-05 00:40:08,001 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2026-03-05 00:40:08,001 [ scc.git] DEBUG * branch refs/pull/671/head -> FETCH_HEAD 2026-03-05 00:40:08,005 [ scc.git] DEBUG Calling 'git fetch origin pull/672/head' 2026-03-05 00:40:08,555 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2026-03-05 00:40:08,555 [ scc.git] DEBUG * branch refs/pull/672/head -> FETCH_HEAD 2026-03-05 00:40:08,557 [ scc.git] DEBUG Calling 'git fetch origin pull/673/head' 2026-03-05 00:40:09,021 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2026-03-05 00:40:09,022 [ scc.git] DEBUG * branch refs/pull/673/head -> FETCH_HEAD 2026-03-05 00:40:09,026 [ scc.git] DEBUG ## Unique users: [] 2026-03-05 00:40:09,026 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:40:09,026 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:40:09,028 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...e4dd3031a6f8b0295d88c5a27d510e2ead252234' 2026-03-05 00:40:09,037 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:40:09,039 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 652 (Add export option for PNG (72 dpi), fixes #394 ) e4dd3031a6f8b0295d88c5a27d510e2ead252234' 2026-03-05 00:40:09,065 [ scc.git] DEBUG Auto-merging omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 2026-03-05 00:40:09,066 [ scc.git] DEBUG Auto-merging src/index.html 2026-03-05 00:40:09,066 [ scc.git] DEBUG Auto-merging src/js/views/figure_view.js 2026-03-05 00:40:09,066 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-03-05 00:40:09,071 [ scc.git] DEBUG .../scripts/omero/figure_scripts/Figure_To_Pdf.py | 163 ++++++++++++++++++++- 2026-03-05 00:40:09,071 [ scc.git] DEBUG src/index.html | 11 ++ 2026-03-05 00:40:09,072 [ scc.git] DEBUG src/js/views/figure_view.js | 1 + 2026-03-05 00:40:09,072 [ scc.git] DEBUG 3 files changed, 172 insertions(+), 3 deletions(-) 2026-03-05 00:40:09,209 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:40:09,209 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...cfaed4dabe5ddc7f27de211c1a2630942a55a775' 2026-03-05 00:40:09,215 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:40:09,217 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 662 (Export script handles OME-zarr images) cfaed4dabe5ddc7f27de211c1a2630942a55a775' 2026-03-05 00:40:09,235 [ scc.git] DEBUG Auto-merging omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 2026-03-05 00:40:09,236 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-03-05 00:40:09,241 [ scc.git] DEBUG .../scripts/omero/figure_scripts/Figure_To_Pdf.py | 435 +++++++++++++++------ 2026-03-05 00:40:09,241 [ scc.git] DEBUG 1 file changed, 319 insertions(+), 116 deletions(-) 2026-03-05 00:40:09,623 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:40:09,624 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2f986f52ea19f9209b6a83450286bc9f5dac72bb' 2026-03-05 00:40:09,630 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:40:09,632 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 663 (Zarr) 2f986f52ea19f9209b6a83450286bc9f5dac72bb' 2026-03-05 00:40:09,650 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-03-05 00:40:09,657 [ scc.git] DEBUG omero_figure/views.py | 11 +- 2026-03-05 00:40:09,657 [ scc.git] DEBUG package-lock.json | 72 ++- 2026-03-05 00:40:09,657 [ scc.git] DEBUG package.json | 4 +- 2026-03-05 00:40:09,657 [ scc.git] DEBUG src/js/models/figure_model.js | 104 ++++- 2026-03-05 00:40:09,657 [ scc.git] DEBUG src/js/models/panel_model.js | 35 +- 2026-03-05 00:40:09,657 [ scc.git] DEBUG src/js/models/zarr_utils.js | 483 +++++++++++++++++++++ 2026-03-05 00:40:09,657 [ scc.git] DEBUG src/js/views/channel_slider_view.js | 3 + 2026-03-05 00:40:09,657 [ scc.git] DEBUG src/js/views/chgrp_modal_view.js | 10 +- 2026-03-05 00:40:09,657 [ scc.git] DEBUG src/js/views/crop_modal_view.js | 12 +- 2026-03-05 00:40:09,657 [ scc.git] DEBUG src/js/views/info_panel_view.js | 37 +- 2026-03-05 00:40:09,657 [ scc.git] DEBUG src/js/views/labels_from_maps_modal.js | 10 +- 2026-03-05 00:40:09,657 [ scc.git] DEBUG src/js/views/lutpicker.js | 2 +- 2026-03-05 00:40:09,657 [ scc.git] DEBUG src/js/views/modal_views.js | 33 +- 2026-03-05 00:40:09,657 [ scc.git] DEBUG src/js/views/panel_view.js | 9 +- 2026-03-05 00:40:09,657 [ scc.git] DEBUG src/js/views/right_panel_view.js | 11 +- 2026-03-05 00:40:09,658 [ scc.git] DEBUG src/js/views/roi_modal_view.js | 49 +-- 2026-03-05 00:40:09,658 [ scc.git] DEBUG src/js/views/util.js | 48 +- 2026-03-05 00:40:09,658 [ scc.git] DEBUG src/templates/figure_panel.template.html | 2 +- 2026-03-05 00:40:09,658 [ scc.git] DEBUG src/templates/info_panel.template.html | 7 + 2026-03-05 00:40:09,658 [ scc.git] DEBUG .../modal_dialogs/crop_modal_roi.template.html | 3 +- 2026-03-05 00:40:09,658 [ scc.git] DEBUG src/templates/viewport_inner.template.html | 3 +- 2026-03-05 00:40:09,658 [ scc.git] DEBUG src/test.html | 25 ++ 2026-03-05 00:40:09,658 [ scc.git] DEBUG 22 files changed, 832 insertions(+), 141 deletions(-) 2026-03-05 00:40:09,658 [ scc.git] DEBUG create mode 100644 src/js/models/zarr_utils.js 2026-03-05 00:40:09,658 [ scc.git] DEBUG create mode 100644 src/test.html 2026-03-05 00:40:10,175 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:40:10,175 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...870a04c282c68091e2e59c8bc04247f7419d05e4' 2026-03-05 00:40:10,182 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:40:10,184 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 666 (Standalone app) 870a04c282c68091e2e59c8bc04247f7419d05e4' 2026-03-05 00:40:10,208 [ scc.git] DEBUG Auto-merging omero_figure/views.py 2026-03-05 00:40:10,208 [ scc.git] DEBUG Auto-merging src/css/figure.css 2026-03-05 00:40:10,208 [ scc.git] DEBUG Auto-merging src/index.html 2026-03-05 00:40:10,208 [ scc.git] DEBUG Auto-merging src/js/models/figure_model.js 2026-03-05 00:40:10,208 [ scc.git] DEBUG Auto-merging src/js/views/figure_view.js 2026-03-05 00:40:10,208 [ scc.git] DEBUG Auto-merging src/js/views/util.js 2026-03-05 00:40:10,208 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/js/views/util.js 2026-03-05 00:40:10,208 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-03-05 00:40:10,208 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-03-05 00:40:10,212 [ scc.git] DEBUG Calling 'git reset --hard 26387528e9bb663ef989faf7a39f6b0174fdfe2a' 2026-03-05 00:40:10,220 [ scc.git] DEBUG HEAD is now at 26387528 merge master -Dorg -Ssuccess-only: PR 663 (Zarr) 2026-03-05 00:40:10,568 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:40:10,569 [ scc.git] DEBUG Calling 'git merge-base 186921eab53e6bdfe6df0720213e1c3759898cf9 870a04c282c68091e2e59c8bc04247f7419d05e4' 2026-03-05 00:40:10,575 [ scc.git] DEBUG Calling 'git diff --name-only b79d638b95385463319f73afc484cf4a1ee3ba13..186921eab53e6bdfe6df0720213e1c3759898cf9' 2026-03-05 00:40:10,578 [ scc.git] INFO - PR 666 will-moore 'Standalone app' Conflicting PR. Removed from build [OMERO-plugins-push#79](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/consoleText) for more details. Possible conflicts: - PR #663 will-moore 'Zarr' - src/js/views/util.js - Upstream changes - src/js/views/util.js --conflicts 2026-03-05 00:40:10,580 [ scc.config] DEBUG Found github.token 2026-03-05 00:40:10,580 [ scc.git] DEBUG Not adding comment to issue #666, already --conflicts. 2026-03-05 00:40:10,580 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...db9437c6ec973c7d1a316a1331eac191cf2a2db6' 2026-03-05 00:40:10,586 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:40:10,588 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 671 (Bump underscore from 1.13.4 to 1.13.8) db9437c6ec973c7d1a316a1331eac191cf2a2db6' 2026-03-05 00:40:10,603 [ scc.git] DEBUG Auto-merging package-lock.json 2026-03-05 00:40:10,603 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2026-03-05 00:40:10,603 [ scc.git] DEBUG Auto-merging package.json 2026-03-05 00:40:10,603 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package.json 2026-03-05 00:40:10,603 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-03-05 00:40:10,603 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-03-05 00:40:10,608 [ scc.git] DEBUG Calling 'git reset --hard 26387528e9bb663ef989faf7a39f6b0174fdfe2a' 2026-03-05 00:40:10,615 [ scc.git] DEBUG HEAD is now at 26387528 merge master -Dorg -Ssuccess-only: PR 663 (Zarr) 2026-03-05 00:40:10,965 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:40:10,965 [ scc.git] DEBUG Calling 'git merge-base 186921eab53e6bdfe6df0720213e1c3759898cf9 db9437c6ec973c7d1a316a1331eac191cf2a2db6' 2026-03-05 00:40:10,968 [ scc.git] DEBUG Calling 'git diff --name-only 186921eab53e6bdfe6df0720213e1c3759898cf9..186921eab53e6bdfe6df0720213e1c3759898cf9' 2026-03-05 00:40:10,971 [ scc.git] INFO - PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8' Conflicting PR. Removed from build [OMERO-plugins-push#79](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/consoleText) for more details. Possible conflicts: - PR #663 will-moore 'Zarr' - package-lock.json - package.json - PR #666 will-moore 'Standalone app' - package.json --conflicts 2026-03-05 00:40:10,973 [ scc.config] DEBUG Found github.token 2026-03-05 00:40:10,973 [ scc.git] DEBUG Not adding comment to issue #671, already --conflicts. 2026-03-05 00:40:10,973 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...70872e138ecc3b909b3fc8ff38c34b417fde4f3c' 2026-03-05 00:40:10,979 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:40:10,981 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 672 (Fix field label list and right panel view CSS issues) 70872e138ecc3b909b3fc8ff38c34b417fde4f3c' 2026-03-05 00:40:10,996 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-03-05 00:40:11,000 [ scc.git] DEBUG src/css/figure.css | 11 ++++++++++- 2026-03-05 00:40:11,000 [ scc.git] DEBUG src/js/views/label_suggestions.js | 2 +- 2026-03-05 00:40:11,000 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 2 deletions(-) 2026-03-05 00:40:11,360 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:40:11,361 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...0f229bda6445f7eca0560d1311a116db20c21e9d' 2026-03-05 00:40:11,367 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:40:11,369 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 673 (Bump dompurify from 3.2.4 to 3.3.1) 0f229bda6445f7eca0560d1311a116db20c21e9d' 2026-03-05 00:40:11,383 [ scc.git] DEBUG Auto-merging package-lock.json 2026-03-05 00:40:11,383 [ scc.git] DEBUG Auto-merging package.json 2026-03-05 00:40:11,384 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-03-05 00:40:11,388 [ scc.git] DEBUG package-lock.json | 8 ++++---- 2026-03-05 00:40:11,388 [ scc.git] DEBUG package.json | 2 +- 2026-03-05 00:40:11,388 [ scc.git] DEBUG 2 files changed, 5 insertions(+), 5 deletions(-) 2026-03-05 00:40:11,763 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:40:11,763 [ scc.git] DEBUG Calling 'git submodule update' 2026-03-05 00:40:11,801 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:40:11,801 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:40:11,803 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-03-05 00:40:11,838 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-03-05 00:40:11,843 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa53ca9b5d0> has no local changes 2026-03-05 00:40:11,843 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-figure Excluded PRs: - PR 669 will-moore 'Standalone python script' (stage: draft) - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier) Updating 9cc36cde..186921ea Previously merged: - PR 667 Tom-TBT 'Label suggestion interface' - PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID' - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO' - PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0' - PR 664 Nirkan 'Handle many channels ' - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes' - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540' - PR 661 Rdornier 'Align to grid - check if panels are already in the grid' - PR 649 jburel 'Replace manual changelog by automated GH release step' - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout' - PR 637 Rdornier 'Fix scalebar position' - PR 600 Rdornier 'Label on rois' - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles' - PR 651 Rdornier 'More compliant align to grid' - PR 650 jburel 'Bump Python version' - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…' - PR 610 will-moore 'Add docs/contributing.rst' - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1' - PR 646 JensWendt 'fix word wrap of image names' - PR 612 will-moore 'Script version' - PR 630 will-moore 'Fix color and position for ALL new panel insets' - PR 616 Rdornier 'Fix labels around border' - PR 605 Tom-TBT 'Colorbar feature' - PR 638 Rdornier 'Fix arrow opacity' - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4' - PR 635 dependabot[bot] 'Bump esbuild and vite' - PR 623 will-moore 'Fix wrapping of label X button. see issues/622' - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 ' - PR 662 will-moore 'Export script handles OME-zarr images' - PR 663 will-moore 'Zarr' - PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues' - PR 673 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.1' Conflicting PRs (not included): - PR 666 will-moore 'Standalone app' - PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8' Generated by OMERO-plugins-push#79 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/)' 2026-03-05 00:40:11,851 [ scc.git] DEBUG [detached HEAD abd97e0a] merge master -Dorg -Ssuccess-only 2026-03-05 00:40:11,851 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:40:11,851 [ scc.repo] DEBUG ## PRs found: 2026-03-05 00:40:12,275 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/pulls HTTP/1.1" 200 None 2026-03-05 00:40:12,790 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/31 HTTP/1.1" 200 None 2026-03-05 00:40:12,790 [ scc.repo] DEBUG # ... Include label: dependencies 2026-03-05 00:40:13,377 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c HTTP/1.1" 200 None 2026-03-05 00:40:13,897 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-03-05 00:40:14,457 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-03-05 00:40:14,927 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c HTTP/1.1" 200 None 2026-03-05 00:40:15,361 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/statuses/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c?per_page=1 HTTP/1.1" 200 2 2026-03-05 00:40:15,362 [ scc.repo] DEBUG - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-03-05 00:40:15,843 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/18 HTTP/1.1" 200 None 2026-03-05 00:40:16,313 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/18/comments HTTP/1.1" 200 None 2026-03-05 00:40:16,845 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337 HTTP/1.1" 200 None 2026-03-05 00:40:17,365 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-03-05 00:40:17,809 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337 HTTP/1.1" 200 None 2026-03-05 00:40:18,249 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/statuses/45aed4d15501fa5a524a8b500af8d426f0f6b337?per_page=1 HTTP/1.1" 200 2 2026-03-05 00:40:18,249 [ scc.repo] DEBUG - PR 18 jburel 'default size z value' 2026-03-05 00:40:18,249 [ scc.repo] DEBUG ## Branches found: 2026-03-05 00:40:18,249 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage 2026-03-05 00:40:18,249 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:40:18,249 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:40:18,252 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-03-05 00:40:18,254 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-03-05 00:40:18,254 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-03-05 00:40:18,257 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-03-05 00:40:18,260 [ scc.git] DEBUG Already up to date. 2026-03-05 00:40:18,260 [ scc.git] DEBUG Calling 'git fetch origin pull/18/head' 2026-03-05 00:40:18,651 [ scc.git] DEBUG From https://github.com/ome/omero-fpbioimage 2026-03-05 00:40:18,651 [ scc.git] DEBUG * branch refs/pull/18/head -> FETCH_HEAD 2026-03-05 00:40:18,655 [ scc.git] DEBUG Calling 'git fetch origin pull/31/head' 2026-03-05 00:40:19,001 [ scc.git] DEBUG From https://github.com/ome/omero-fpbioimage 2026-03-05 00:40:19,001 [ scc.git] DEBUG * branch refs/pull/31/head -> FETCH_HEAD 2026-03-05 00:40:19,005 [ scc.git] DEBUG ## Unique users: [] 2026-03-05 00:40:19,005 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:40:19,005 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:40:19,007 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45aed4d15501fa5a524a8b500af8d426f0f6b337' 2026-03-05 00:40:19,010 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:40:19,012 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 18 (default size z value) 45aed4d15501fa5a524a8b500af8d426f0f6b337' 2026-03-05 00:40:19,019 [ scc.git] DEBUG Auto-merging omero_fpbioimage/views.py 2026-03-05 00:40:19,019 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-03-05 00:40:19,022 [ scc.git] DEBUG omero_fpbioimage/views.py | 2 ++ 2026-03-05 00:40:19,022 [ scc.git] DEBUG 1 file changed, 2 insertions(+) 2026-03-05 00:40:19,197 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:40:19,198 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c' 2026-03-05 00:40:19,201 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:40:19,203 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 31 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c' 2026-03-05 00:40:19,210 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-03-05 00:40:19,212 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-03-05 00:40:19,212 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-03-05 00:40:19,595 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:40:19,595 [ scc.git] DEBUG Calling 'git submodule update' 2026-03-05 00:40:19,632 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:40:19,633 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:40:19,635 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-03-05 00:40:19,673 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-03-05 00:40:19,676 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa53b8e93d0> has no local changes 2026-03-05 00:40:19,676 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-fpbioimage Already up to date. Merged PRs: - PR 18 jburel 'default size z value' - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#79 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/)' 2026-03-05 00:40:19,682 [ scc.git] DEBUG [detached HEAD 0ac393d] merge master -Dorg -Ssuccess-only 2026-03-05 00:40:19,682 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:40:19,682 [ scc.repo] DEBUG ## PRs found: 2026-03-05 00:40:20,157 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/pulls HTTP/1.1" 200 None 2026-03-05 00:40:20,730 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/119 HTTP/1.1" 200 None 2026-03-05 00:40:21,285 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/119/comments HTTP/1.1" 200 None 2026-03-05 00:40:21,776 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/9042541/issues/119/comments?page=2 HTTP/1.1" 200 None 2026-03-05 00:40:21,777 [ scc.repo] DEBUG # ... Include label: dependencies 2026-03-05 00:40:22,390 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062 HTTP/1.1" 200 None 2026-03-05 00:40:22,925 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-03-05 00:40:23,447 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-03-05 00:40:24,006 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062 HTTP/1.1" 200 None 2026-03-05 00:40:24,444 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/00257fc993a12b3f78a45db039e7bf2c8a406062?per_page=1 HTTP/1.1" 200 2 2026-03-05 00:40:24,444 [ scc.repo] DEBUG - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' 2026-03-05 00:40:24,969 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/118 HTTP/1.1" 200 None 2026-03-05 00:40:25,463 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/118/comments HTTP/1.1" 200 None 2026-03-05 00:40:25,923 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/9042541/issues/118/comments?page=2 HTTP/1.1" 200 None 2026-03-05 00:40:25,924 [ scc.repo] DEBUG # ... Include label: dependencies 2026-03-05 00:40:26,495 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d HTTP/1.1" 200 None 2026-03-05 00:40:26,966 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-03-05 00:40:27,425 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d HTTP/1.1" 200 None 2026-03-05 00:40:27,861 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/2bf34ddacb511c52e473a104fe2a1c00204bae1d?per_page=1 HTTP/1.1" 200 2 2026-03-05 00:40:27,861 [ scc.repo] DEBUG - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' 2026-03-05 00:40:28,352 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/117 HTTP/1.1" 200 None 2026-03-05 00:40:28,352 [ scc.repo] DEBUG # ... Include label: dependencies 2026-03-05 00:40:28,920 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c HTTP/1.1" 200 None 2026-03-05 00:40:29,403 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-03-05 00:40:29,962 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c HTTP/1.1" 200 None 2026-03-05 00:40:30,387 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/155d7ddab4f04c4a91bffc5736ba0741003c566c?per_page=1 HTTP/1.1" 200 2 2026-03-05 00:40:30,388 [ scc.repo] DEBUG - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' 2026-03-05 00:40:30,900 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/116 HTTP/1.1" 200 None 2026-03-05 00:40:30,901 [ scc.repo] DEBUG # ... Include label: dependencies 2026-03-05 00:40:31,500 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d HTTP/1.1" 200 None 2026-03-05 00:40:31,963 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-03-05 00:40:32,515 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d HTTP/1.1" 200 None 2026-03-05 00:40:32,950 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d?per_page=1 HTTP/1.1" 200 2 2026-03-05 00:40:32,950 [ scc.repo] DEBUG - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' 2026-03-05 00:40:33,436 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/115 HTTP/1.1" 200 None 2026-03-05 00:40:33,892 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/115/comments HTTP/1.1" 200 None 2026-03-05 00:40:33,893 [ scc.repo] DEBUG # ... Include label: dependencies 2026-03-05 00:40:34,642 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5 HTTP/1.1" 200 None 2026-03-05 00:40:35,109 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-03-05 00:40:35,562 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5 HTTP/1.1" 200 None 2026-03-05 00:40:35,989 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/25020d66a7df4ec3cad5967706bb7d13b1493bb5?per_page=1 HTTP/1.1" 200 2 2026-03-05 00:40:35,989 [ scc.repo] DEBUG - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' 2026-03-05 00:40:36,496 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/114 HTTP/1.1" 200 None 2026-03-05 00:40:36,497 [ scc.repo] DEBUG # ... Include label: dependencies 2026-03-05 00:40:37,058 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b HTTP/1.1" 200 None 2026-03-05 00:40:37,522 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-03-05 00:40:38,010 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b HTTP/1.1" 200 None 2026-03-05 00:40:38,444 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/cf75d259b2882000d6be73bc1c11c99c27aa439b?per_page=1 HTTP/1.1" 200 2 2026-03-05 00:40:38,444 [ scc.repo] DEBUG - PR 114 dependabot[bot] 'Bump tar and fsevents' 2026-03-05 00:40:38,930 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/113 HTTP/1.1" 200 None 2026-03-05 00:40:38,930 [ scc.repo] DEBUG # ... Include label: dependencies 2026-03-05 00:40:39,499 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e HTTP/1.1" 200 None 2026-03-05 00:40:39,955 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-03-05 00:40:40,419 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e HTTP/1.1" 200 None 2026-03-05 00:40:40,844 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/6a657d7a4e0bbfaa3464e851023f29c63db15d4e?per_page=1 HTTP/1.1" 200 2 2026-03-05 00:40:40,844 [ scc.repo] DEBUG - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' 2026-03-05 00:40:40,844 [ scc.repo] DEBUG ## Branches found: 2026-03-05 00:40:40,844 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery 2026-03-05 00:40:40,845 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:40:40,845 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:40:40,847 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-03-05 00:40:40,850 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-03-05 00:40:40,850 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-03-05 00:40:40,852 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-03-05 00:40:40,855 [ scc.git] DEBUG Already up to date. 2026-03-05 00:40:40,855 [ scc.git] DEBUG Calling 'git fetch origin pull/113/head' 2026-03-05 00:40:41,129 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-03-05 00:40:41,129 [ scc.git] DEBUG * branch refs/pull/113/head -> FETCH_HEAD 2026-03-05 00:40:41,132 [ scc.git] DEBUG Calling 'git fetch origin pull/114/head' 2026-03-05 00:40:41,392 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-03-05 00:40:41,392 [ scc.git] DEBUG * branch refs/pull/114/head -> FETCH_HEAD 2026-03-05 00:40:41,396 [ scc.git] DEBUG Calling 'git fetch origin pull/115/head' 2026-03-05 00:40:41,775 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-03-05 00:40:41,775 [ scc.git] DEBUG * branch refs/pull/115/head -> FETCH_HEAD 2026-03-05 00:40:41,778 [ scc.git] DEBUG Calling 'git fetch origin pull/116/head' 2026-03-05 00:40:42,152 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-03-05 00:40:42,153 [ scc.git] DEBUG * branch refs/pull/116/head -> FETCH_HEAD 2026-03-05 00:40:42,157 [ scc.git] DEBUG Calling 'git fetch origin pull/117/head' 2026-03-05 00:40:42,426 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-03-05 00:40:42,426 [ scc.git] DEBUG * branch refs/pull/117/head -> FETCH_HEAD 2026-03-05 00:40:42,430 [ scc.git] DEBUG Calling 'git fetch origin pull/118/head' 2026-03-05 00:40:42,682 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-03-05 00:40:42,682 [ scc.git] DEBUG * branch refs/pull/118/head -> FETCH_HEAD 2026-03-05 00:40:42,685 [ scc.git] DEBUG Calling 'git fetch origin pull/119/head' 2026-03-05 00:40:43,130 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-03-05 00:40:43,130 [ scc.git] DEBUG * branch refs/pull/119/head -> FETCH_HEAD 2026-03-05 00:40:43,135 [ scc.git] DEBUG ## Unique users: [] 2026-03-05 00:40:43,135 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:40:43,135 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:40:43,137 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6a657d7a4e0bbfaa3464e851023f29c63db15d4e' 2026-03-05 00:40:43,140 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:40:43,142 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 113 (Bump elliptic from 6.5.4 to 6.6.1) 6a657d7a4e0bbfaa3464e851023f29c63db15d4e' 2026-03-05 00:40:43,150 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-03-05 00:40:43,154 [ scc.git] DEBUG package-lock.json | 12 ++++++------ 2026-03-05 00:40:43,154 [ scc.git] DEBUG 1 file changed, 6 insertions(+), 6 deletions(-) 2026-03-05 00:40:43,302 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:40:43,302 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...cf75d259b2882000d6be73bc1c11c99c27aa439b' 2026-03-05 00:40:43,305 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:40:43,307 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 114 (Bump tar and fsevents) cf75d259b2882000d6be73bc1c11c99c27aa439b' 2026-03-05 00:40:43,321 [ scc.git] DEBUG Auto-merging package-lock.json 2026-03-05 00:40:43,322 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-03-05 00:40:43,327 [ scc.git] DEBUG package-lock.json | 625 +++--------------------------------------------------- 2026-03-05 00:40:43,327 [ scc.git] DEBUG 1 file changed, 29 insertions(+), 596 deletions(-) 2026-03-05 00:40:43,701 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:40:43,702 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25020d66a7df4ec3cad5967706bb7d13b1493bb5' 2026-03-05 00:40:43,704 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:40:43,707 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 115 (Bump micromatch, webpack-cli and webpack) 25020d66a7df4ec3cad5967706bb7d13b1493bb5' 2026-03-05 00:40:43,723 [ scc.git] DEBUG Auto-merging package-lock.json 2026-03-05 00:40:43,723 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2026-03-05 00:40:43,723 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-03-05 00:40:43,723 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-03-05 00:40:43,726 [ scc.git] DEBUG Calling 'git reset --hard bde1f80b622a226548ce8928e748e4739f4e39b2' 2026-03-05 00:40:43,730 [ scc.git] DEBUG HEAD is now at bde1f80 merge master -Dorg -Ssuccess-only: PR 114 (Bump tar and fsevents) 2026-03-05 00:40:44,112 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:40:44,113 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 25020d66a7df4ec3cad5967706bb7d13b1493bb5' 2026-03-05 00:40:44,116 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd' 2026-03-05 00:40:44,118 [ scc.git] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' Conflicting PR. Removed from build [OMERO-plugins-push#79](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/consoleText) for more details. Possible conflicts: - PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - package-lock.json - PR #114 dependabot[bot] 'Bump tar and fsevents' - package-lock.json --conflicts 2026-03-05 00:40:44,120 [ scc.config] DEBUG Found github.token 2026-03-05 00:40:44,120 [ scc.git] DEBUG Not adding comment to issue #115, already --conflicts. 2026-03-05 00:40:44,120 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d' 2026-03-05 00:40:44,123 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:40:44,125 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 116 (Bump browserify-sign from 4.0.4 to 4.2.3) 42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d' 2026-03-05 00:40:44,139 [ scc.git] DEBUG Auto-merging package-lock.json 2026-03-05 00:40:44,139 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-03-05 00:40:44,144 [ scc.git] DEBUG package-lock.json | 119 +++++++++++++++++++++++++++++++++++++++++++++++++----- 2026-03-05 00:40:44,144 [ scc.git] DEBUG 1 file changed, 108 insertions(+), 11 deletions(-) 2026-03-05 00:40:44,507 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:40:44,508 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...155d7ddab4f04c4a91bffc5736ba0741003c566c' 2026-03-05 00:40:44,511 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:40:44,513 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6) 155d7ddab4f04c4a91bffc5736ba0741003c566c' 2026-03-05 00:40:44,529 [ scc.git] DEBUG Auto-merging package-lock.json 2026-03-05 00:40:44,529 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-03-05 00:40:44,534 [ scc.git] DEBUG package-lock.json | 6 +++--- 2026-03-05 00:40:44,534 [ scc.git] DEBUG 1 file changed, 3 insertions(+), 3 deletions(-) 2026-03-05 00:40:44,902 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:40:44,902 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2bf34ddacb511c52e473a104fe2a1c00204bae1d' 2026-03-05 00:40:44,905 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:40:44,908 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 118 (Bump braces, webpack-cli and webpack) 2bf34ddacb511c52e473a104fe2a1c00204bae1d' 2026-03-05 00:40:44,923 [ scc.git] DEBUG Auto-merging package-lock.json 2026-03-05 00:40:44,923 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2026-03-05 00:40:44,923 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-03-05 00:40:44,923 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-03-05 00:40:44,926 [ scc.git] DEBUG Calling 'git reset --hard 0d6cb60f86bccc586d72c3b7bf7d63de57243f27' 2026-03-05 00:40:44,931 [ scc.git] DEBUG HEAD is now at 0d6cb60 merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6) 2026-03-05 00:40:45,309 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:40:45,310 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 2bf34ddacb511c52e473a104fe2a1c00204bae1d' 2026-03-05 00:40:45,313 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd' 2026-03-05 00:40:45,316 [ scc.git] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' Conflicting PR. Removed from build [OMERO-plugins-push#79](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/consoleText) for more details. Possible conflicts: - PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - package-lock.json - PR #114 dependabot[bot] 'Bump tar and fsevents' - package-lock.json - PR #115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - package-lock.json - PR #116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - package-lock.json - PR #117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' - package-lock.json --conflicts 2026-03-05 00:40:45,318 [ scc.config] DEBUG Found github.token 2026-03-05 00:40:45,318 [ scc.git] DEBUG Not adding comment to issue #118, already --conflicts. 2026-03-05 00:40:45,318 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...00257fc993a12b3f78a45db039e7bf2c8a406062' 2026-03-05 00:40:45,321 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:40:45,323 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 119 (Bump serialize-javascript and webpack) 00257fc993a12b3f78a45db039e7bf2c8a406062' 2026-03-05 00:40:45,341 [ scc.git] DEBUG Auto-merging package-lock.json 2026-03-05 00:40:45,341 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2026-03-05 00:40:45,341 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-03-05 00:40:45,341 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-03-05 00:40:45,344 [ scc.git] DEBUG Calling 'git reset --hard 0d6cb60f86bccc586d72c3b7bf7d63de57243f27' 2026-03-05 00:40:45,348 [ scc.git] DEBUG HEAD is now at 0d6cb60 merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6) 2026-03-05 00:40:45,723 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:40:45,723 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 00257fc993a12b3f78a45db039e7bf2c8a406062' 2026-03-05 00:40:45,726 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd' 2026-03-05 00:40:45,728 [ scc.git] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' Conflicting PR. Removed from build [OMERO-plugins-push#79](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/consoleText) for more details. Possible conflicts: - PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - package-lock.json - PR #114 dependabot[bot] 'Bump tar and fsevents' - package-lock.json - PR #115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - package-lock.json - PR #116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - package-lock.json - PR #117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' - package-lock.json - PR #118 dependabot[bot] 'Bump braces, webpack-cli and webpack' - package-lock.json --conflicts 2026-03-05 00:40:45,730 [ scc.config] DEBUG Found github.token 2026-03-05 00:40:45,731 [ scc.git] DEBUG Not adding comment to issue #119, already --conflicts. 2026-03-05 00:40:45,731 [ scc.git] DEBUG Calling 'git submodule update' 2026-03-05 00:40:45,770 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:40:45,770 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:40:45,772 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-03-05 00:40:45,809 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-03-05 00:40:45,815 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa53b9037d0> has no local changes 2026-03-05 00:40:45,815 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-gallery Already up to date. Merged PRs: - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - PR 114 dependabot[bot] 'Bump tar and fsevents' - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' Conflicting PRs (not included): - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' Generated by OMERO-plugins-push#79 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/)' 2026-03-05 00:40:45,822 [ scc.git] DEBUG [detached HEAD bd79cdf] merge master -Dorg -Ssuccess-only 2026-03-05 00:40:45,823 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:40:45,823 [ scc.repo] DEBUG ## PRs found: 2026-03-05 00:40:46,391 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls HTTP/1.1" 200 None 2026-03-05 00:40:46,893 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/513 HTTP/1.1" 200 None 2026-03-05 00:40:47,420 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/aebb6273b9267a47a47363208fa97dc9c638a688 HTTP/1.1" 200 None 2026-03-05 00:40:47,951 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/aebb6273b9267a47a47363208fa97dc9c638a688/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-03-05 00:40:48,474 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/aebb6273b9267a47a47363208fa97dc9c638a688/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-03-05 00:40:49,026 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/aebb6273b9267a47a47363208fa97dc9c638a688 HTTP/1.1" 200 None 2026-03-05 00:40:49,441 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/aebb6273b9267a47a47363208fa97dc9c638a688?per_page=1 HTTP/1.1" 200 2 2026-03-05 00:40:49,442 [ scc.repo] DEBUG - PR 513 jburel 'Bump Python version' 2026-03-05 00:40:49,936 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/512 HTTP/1.1" 200 None 2026-03-05 00:40:50,470 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/ec8f9e716c574a715529da53dff61ef178020c43 HTTP/1.1" 200 None 2026-03-05 00:40:50,943 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/ec8f9e716c574a715529da53dff61ef178020c43/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-03-05 00:40:51,415 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/ec8f9e716c574a715529da53dff61ef178020c43/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-03-05 00:40:51,929 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/ec8f9e716c574a715529da53dff61ef178020c43 HTTP/1.1" 200 None 2026-03-05 00:40:52,503 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/ec8f9e716c574a715529da53dff61ef178020c43?per_page=1 HTTP/1.1" 200 2 2026-03-05 00:40:52,503 [ scc.repo] DEBUG - PR 512 jburel 'Replace manual changelog by automated GH release step' 2026-03-05 00:40:53,008 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/511 HTTP/1.1" 200 None 2026-03-05 00:40:53,478 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/508 HTTP/1.1" 200 None 2026-03-05 00:40:53,990 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/503 HTTP/1.1" 200 None 2026-03-05 00:40:54,456 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/503/comments HTTP/1.1" 200 None 2026-03-05 00:40:55,100 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/497 HTTP/1.1" 200 None 2026-03-05 00:40:55,574 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/497/comments HTTP/1.1" 200 None 2026-03-05 00:40:56,079 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/471 HTTP/1.1" 200 None 2026-03-05 00:40:56,544 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/471/comments HTTP/1.1" 200 None 2026-03-05 00:40:57,065 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9 HTTP/1.1" 200 None 2026-03-05 00:40:57,521 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-03-05 00:40:57,980 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9 HTTP/1.1" 200 None 2026-03-05 00:40:58,396 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/448d042a58da05a522531356cc58c1e35b5744d9?per_page=1 HTTP/1.1" 200 2 2026-03-05 00:40:58,397 [ scc.repo] DEBUG - PR 471 will-moore 'Z projection disabled tooltip' 2026-03-05 00:40:58,917 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/465 HTTP/1.1" 200 None 2026-03-05 00:40:59,414 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/465/comments HTTP/1.1" 200 None 2026-03-05 00:40:59,957 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/63dd9266a853ff522780066673d0ae2b770238cd HTTP/1.1" 200 None 2026-03-05 00:41:00,410 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/63dd9266a853ff522780066673d0ae2b770238cd/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-03-05 00:41:00,854 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/63dd9266a853ff522780066673d0ae2b770238cd HTTP/1.1" 200 None 2026-03-05 00:41:01,289 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/63dd9266a853ff522780066673d0ae2b770238cd?per_page=1 HTTP/1.1" 200 2 2026-03-05 00:41:01,290 [ scc.repo] DEBUG - PR 465 will-moore 'Save as Figure' 2026-03-05 00:41:01,812 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/460 HTTP/1.1" 200 None 2026-03-05 00:41:02,316 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/460/comments HTTP/1.1" 200 None 2026-03-05 00:41:02,855 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/dada2c46211e3bf8015cc47464ab2761ef74ca30 HTTP/1.1" 200 None 2026-03-05 00:41:03,366 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/dada2c46211e3bf8015cc47464ab2761ef74ca30/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-03-05 00:41:03,866 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/dada2c46211e3bf8015cc47464ab2761ef74ca30 HTTP/1.1" 200 None 2026-03-05 00:41:04,289 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/dada2c46211e3bf8015cc47464ab2761ef74ca30?per_page=1 HTTP/1.1" 200 2 2026-03-05 00:41:04,289 [ scc.repo] DEBUG - PR 460 will-moore 'Channel min spinner fix' 2026-03-05 00:41:04,919 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/227 HTTP/1.1" 200 None 2026-03-05 00:41:05,402 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/227/comments HTTP/1.1" 200 None 2026-03-05 00:41:05,903 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/a081a9f2892763bd49a7ad7ba425965150e76f97 HTTP/1.1" 200 None 2026-03-05 00:41:06,379 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/a081a9f2892763bd49a7ad7ba425965150e76f97/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-03-05 00:41:06,898 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/a081a9f2892763bd49a7ad7ba425965150e76f97/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-03-05 00:41:06,900 [ scc.repo] DEBUG ## Branches found: 2026-03-05 00:41:06,900 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer 2026-03-05 00:41:06,900 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:41:06,900 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:41:06,903 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-03-05 00:41:06,905 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-03-05 00:41:06,905 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-03-05 00:41:06,908 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-03-05 00:41:06,914 [ scc.git] DEBUG Updating 7a798ce..5e2de43 2026-03-05 00:41:07,600 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/510 HTTP/1.1" 200 None 2026-03-05 00:41:08,256 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/506 HTTP/1.1" 200 None 2026-03-05 00:41:08,257 [ scc.git] DEBUG Calling 'git fetch origin pull/460/head' 2026-03-05 00:41:08,558 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-03-05 00:41:08,558 [ scc.git] DEBUG * branch refs/pull/460/head -> FETCH_HEAD 2026-03-05 00:41:08,562 [ scc.git] DEBUG Calling 'git fetch origin pull/465/head' 2026-03-05 00:41:08,823 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-03-05 00:41:08,824 [ scc.git] DEBUG * branch refs/pull/465/head -> FETCH_HEAD 2026-03-05 00:41:08,828 [ scc.git] DEBUG Calling 'git fetch origin pull/471/head' 2026-03-05 00:41:09,219 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-03-05 00:41:09,219 [ scc.git] DEBUG * branch refs/pull/471/head -> FETCH_HEAD 2026-03-05 00:41:09,223 [ scc.git] DEBUG Calling 'git fetch origin pull/512/head' 2026-03-05 00:41:09,581 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-03-05 00:41:09,581 [ scc.git] DEBUG * branch refs/pull/512/head -> FETCH_HEAD 2026-03-05 00:41:09,585 [ scc.git] DEBUG Calling 'git fetch origin pull/513/head' 2026-03-05 00:41:09,840 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-03-05 00:41:09,841 [ scc.git] DEBUG * branch refs/pull/513/head -> FETCH_HEAD 2026-03-05 00:41:09,845 [ scc.git] DEBUG ## Unique users: [] 2026-03-05 00:41:09,845 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:41:09,845 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:41:09,847 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...dada2c46211e3bf8015cc47464ab2761ef74ca30' 2026-03-05 00:41:09,851 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:41:09,853 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 460 (Channel min spinner fix) dada2c46211e3bf8015cc47464ab2761ef74ca30' 2026-03-05 00:41:09,863 [ scc.git] DEBUG Auto-merging src/model/image_info.js 2026-03-05 00:41:09,863 [ scc.git] DEBUG Auto-merging src/settings/channel-range.js 2026-03-05 00:41:09,864 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-03-05 00:41:09,868 [ scc.git] DEBUG src/model/image_info.js | 7 ++++--- 2026-03-05 00:41:09,868 [ scc.git] DEBUG src/settings/channel-range.js | 4 +++- 2026-03-05 00:41:09,868 [ scc.git] DEBUG 2 files changed, 7 insertions(+), 4 deletions(-) 2026-03-05 00:41:10,009 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:41:10,010 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...63dd9266a853ff522780066673d0ae2b770238cd' 2026-03-05 00:41:10,014 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:41:10,016 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 465 (Save as Figure) 63dd9266a853ff522780066673d0ae2b770238cd' 2026-03-05 00:41:10,031 [ scc.git] DEBUG Auto-merging plugin/omero_iviewer/views.py 2026-03-05 00:41:10,031 [ scc.git] DEBUG Auto-merging src/app/context.js 2026-03-05 00:41:10,032 [ scc.git] DEBUG Auto-merging src/utils/constants.js 2026-03-05 00:41:10,032 [ scc.git] DEBUG Auto-merging src/viewers/viewer/Viewer.js 2026-03-05 00:41:10,032 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-03-05 00:41:10,036 [ scc.git] DEBUG plugin/omero_iviewer/views.py | 17 +++- 2026-03-05 00:41:10,036 [ scc.git] DEBUG src/app/context.js | 6 +- 2026-03-05 00:41:10,036 [ scc.git] DEBUG src/app/header.html | 5 + 2026-03-05 00:41:10,036 [ scc.git] DEBUG src/app/header.js | 45 ++++++++- 2026-03-05 00:41:10,036 [ scc.git] DEBUG src/utils/constants.js | 6 ++ 2026-03-05 00:41:10,036 [ scc.git] DEBUG src/utils/figure.js | 217 ++++++++++++++++++++++++++++++++++++++++++ 2026-03-05 00:41:10,036 [ scc.git] DEBUG 6 files changed, 290 insertions(+), 6 deletions(-) 2026-03-05 00:41:10,036 [ scc.git] DEBUG create mode 100644 src/utils/figure.js 2026-03-05 00:41:10,412 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:41:10,413 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...448d042a58da05a522531356cc58c1e35b5744d9' 2026-03-05 00:41:10,417 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:41:10,420 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 471 (Z projection disabled tooltip) 448d042a58da05a522531356cc58c1e35b5744d9' 2026-03-05 00:41:10,430 [ scc.git] DEBUG Auto-merging src/controls/dimension-slider.js 2026-03-05 00:41:10,431 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-03-05 00:41:10,434 [ scc.git] DEBUG src/controls/dimension-slider.html | 2 +- 2026-03-05 00:41:10,434 [ scc.git] DEBUG src/controls/dimension-slider.js | 20 ++++++++++++++++++++ 2026-03-05 00:41:10,434 [ scc.git] DEBUG 2 files changed, 21 insertions(+), 1 deletion(-) 2026-03-05 00:41:10,828 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:41:10,829 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...ec8f9e716c574a715529da53dff61ef178020c43' 2026-03-05 00:41:10,833 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:41:10,835 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 512 (Replace manual changelog by automated GH release step) ec8f9e716c574a715529da53dff61ef178020c43' 2026-03-05 00:41:10,845 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-03-05 00:41:10,848 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 5 + 2026-03-05 00:41:10,848 [ scc.git] DEBUG CHANGELOG.md | 261 ------------------------------------- 2026-03-05 00:41:10,848 [ scc.git] DEBUG 2 files changed, 5 insertions(+), 261 deletions(-) 2026-03-05 00:41:10,848 [ scc.git] DEBUG delete mode 100644 CHANGELOG.md 2026-03-05 00:41:11,533 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:41:11,534 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...aebb6273b9267a47a47363208fa97dc9c638a688' 2026-03-05 00:41:11,538 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:41:11,540 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 513 (Bump Python version) aebb6273b9267a47a47363208fa97dc9c638a688' 2026-03-05 00:41:11,549 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml 2026-03-05 00:41:11,550 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-03-05 00:41:11,553 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 4 ++-- 2026-03-05 00:41:11,553 [ scc.git] DEBUG 1 file changed, 2 insertions(+), 2 deletions(-) 2026-03-05 00:41:11,943 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:41:11,944 [ scc.git] DEBUG Calling 'git submodule update' 2026-03-05 00:41:11,981 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:41:11,981 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:41:11,983 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-03-05 00:41:12,018 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-03-05 00:41:12,022 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa53b911050> has no local changes 2026-03-05 00:41:12,022 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-iviewer Excluded PRs: - PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft) - PR 508 will-moore 'Broadcast channel demo' (stage: draft) - PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft) - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft) - PR 420 will-moore 'Add release process to README' (exclude comment) - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment) - PR 227 will-moore 'Vectortile investigation' (status: failure) Updating 7a798ce..5e2de43 Previously merged: - PR 510 joshmoore 'Re-enable omero-test-infra' - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 460 will-moore 'Channel min spinner fix' - PR 465 will-moore 'Save as Figure' - PR 471 will-moore 'Z projection disabled tooltip' - PR 512 jburel 'Replace manual changelog by automated GH release step' - PR 513 jburel 'Bump Python version' Generated by OMERO-plugins-push#79 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/)' 2026-03-05 00:41:12,028 [ scc.git] DEBUG [detached HEAD 8b41787] merge master -Dorg -Ssuccess-only 2026-03-05 00:41:12,028 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:41:12,028 [ scc.repo] DEBUG ## PRs found: 2026-03-05 00:41:12,604 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/pulls HTTP/1.1" 200 None 2026-03-05 00:41:13,122 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95 HTTP/1.1" 200 None 2026-03-05 00:41:13,582 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95/comments HTTP/1.1" 200 None 2026-03-05 00:41:13,583 [ scc.repo] DEBUG # ... Include label: dependencies 2026-03-05 00:41:14,147 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99 HTTP/1.1" 200 None 2026-03-05 00:41:14,881 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-03-05 00:41:15,405 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-03-05 00:41:15,993 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99 HTTP/1.1" 200 None 2026-03-05 00:41:16,419 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/38cc352a088eaedfaa2dd8874c4f200f98f41a99?per_page=1 HTTP/1.1" 200 2 2026-03-05 00:41:16,420 [ scc.repo] DEBUG - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-03-05 00:41:16,915 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/94 HTTP/1.1" 200 None 2026-03-05 00:41:17,416 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None 2026-03-05 00:41:17,886 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-03-05 00:41:18,430 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None 2026-03-05 00:41:18,869 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1896cfebc876f939f8d83bd1cf56b8584ff2921d?per_page=1 HTTP/1.1" 200 2 2026-03-05 00:41:18,870 [ scc.repo] DEBUG - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-03-05 00:41:19,359 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None 2026-03-05 00:41:19,844 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None 2026-03-05 00:41:20,403 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None 2026-03-05 00:41:20,864 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-03-05 00:41:21,351 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None 2026-03-05 00:41:21,779 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/45ee35acc44a7d119aa20b38b0427efbe5405322?per_page=1 HTTP/1.1" 200 2 2026-03-05 00:41:21,779 [ scc.repo] DEBUG - PR 74 will-moore 'mapr extension of webclient' 2026-03-05 00:41:21,780 [ scc.repo] DEBUG ## Branches found: 2026-03-05 00:41:21,780 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr 2026-03-05 00:41:21,780 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:41:21,780 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:41:21,782 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-03-05 00:41:21,785 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-03-05 00:41:21,785 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-03-05 00:41:21,787 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-03-05 00:41:21,790 [ scc.git] DEBUG Already up to date. 2026-03-05 00:41:21,790 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head' 2026-03-05 00:41:22,061 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2026-03-05 00:41:22,061 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD 2026-03-05 00:41:22,065 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head' 2026-03-05 00:41:22,321 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2026-03-05 00:41:22,321 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD 2026-03-05 00:41:22,325 [ scc.git] DEBUG Calling 'git fetch origin pull/95/head' 2026-03-05 00:41:22,710 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2026-03-05 00:41:22,710 [ scc.git] DEBUG * branch refs/pull/95/head -> FETCH_HEAD 2026-03-05 00:41:22,715 [ scc.git] DEBUG ## Unique users: [] 2026-03-05 00:41:22,715 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:41:22,715 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:41:22,717 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45ee35acc44a7d119aa20b38b0427efbe5405322' 2026-03-05 00:41:22,721 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:41:22,723 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (mapr extension of webclient) 45ee35acc44a7d119aa20b38b0427efbe5405322' 2026-03-05 00:41:22,730 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-03-05 00:41:22,733 [ scc.git] DEBUG .../templates/webclient/base/base_container.html | 182 +++++++++++++ 2026-03-05 00:41:22,733 [ scc.git] DEBUG .../data/includes/right_plugin.general.js.html | 290 --------------------- 2026-03-05 00:41:22,733 [ scc.git] DEBUG requirements.txt | 2 +- 2026-03-05 00:41:22,733 [ scc.git] DEBUG 3 files changed, 183 insertions(+), 291 deletions(-) 2026-03-05 00:41:22,733 [ scc.git] DEBUG create mode 100644 omero_mapr/templates/webclient/base/base_container.html 2026-03-05 00:41:22,733 [ scc.git] DEBUG delete mode 100644 omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html 2026-03-05 00:41:22,871 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:41:22,872 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d' 2026-03-05 00:41:22,875 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:41:22,877 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d' 2026-03-05 00:41:22,884 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-03-05 00:41:22,887 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-03-05 00:41:22,887 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-03-05 00:41:23,293 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:41:23,294 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38cc352a088eaedfaa2dd8874c4f200f98f41a99' 2026-03-05 00:41:23,297 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:41:23,300 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 95 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 38cc352a088eaedfaa2dd8874c4f200f98f41a99' 2026-03-05 00:41:23,306 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml 2026-03-05 00:41:23,306 [ scc.git] DEBUG CONFLICT (content): Merge conflict in .github/workflows/publish_pypi.yml 2026-03-05 00:41:23,307 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-03-05 00:41:23,307 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-03-05 00:41:23,309 [ scc.git] DEBUG Calling 'git reset --hard 923b6be26bbf78761702fbcffdd013051f55906b' 2026-03-05 00:41:23,313 [ scc.git] DEBUG HEAD is now at 923b6be merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 2026-03-05 00:41:23,687 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:41:23,687 [ scc.git] DEBUG Calling 'git merge-base 0a557da89145e65db313c1721a26cb43e490dd8a 38cc352a088eaedfaa2dd8874c4f200f98f41a99' 2026-03-05 00:41:23,690 [ scc.git] DEBUG Calling 'git diff --name-only 0a557da89145e65db313c1721a26cb43e490dd8a..0a557da89145e65db313c1721a26cb43e490dd8a' 2026-03-05 00:41:23,692 [ scc.git] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Conflicting PR. Removed from build [OMERO-plugins-push#79](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/consoleText) for more details. Possible conflicts: - PR #94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' - .github/workflows/publish_pypi.yml --conflicts 2026-03-05 00:41:23,694 [ scc.config] DEBUG Found github.token 2026-03-05 00:41:23,695 [ scc.git] DEBUG Not adding comment to issue #95, already --conflicts. 2026-03-05 00:41:23,695 [ scc.git] DEBUG Calling 'git submodule update' 2026-03-05 00:41:23,731 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:41:23,731 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:41:23,733 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-03-05 00:41:23,769 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-03-05 00:41:23,772 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa53b906b90> has no local changes 2026-03-05 00:41:23,772 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-mapr Excluded PRs: - PR 79 will-moore 'Right panel title' (exclude comment) Already up to date. Merged PRs: - PR 74 will-moore 'mapr extension of webclient' - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Conflicting PRs (not included): - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#79 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/)' 2026-03-05 00:41:23,778 [ scc.git] DEBUG [detached HEAD 03ec09f] merge master -Dorg -Ssuccess-only 2026-03-05 00:41:23,778 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:41:23,779 [ scc.repo] DEBUG ## PRs found: 2026-03-05 00:41:24,244 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None 2026-03-05 00:41:24,757 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/92 HTTP/1.1" 200 None 2026-03-05 00:41:25,206 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/92/comments HTTP/1.1" 200 None 2026-03-05 00:41:25,745 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f HTTP/1.1" 200 None 2026-03-05 00:41:26,225 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-03-05 00:41:26,721 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f HTTP/1.1" 200 None 2026-03-05 00:41:27,142 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/64d33da6022f537d572d4f69a5cec86377b6e78f?per_page=1 HTTP/1.1" 200 2 2026-03-05 00:41:27,142 [ scc.repo] DEBUG - PR 92 dominikl 'add resolve_rois to projectwrapper' 2026-03-05 00:41:27,610 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None 2026-03-05 00:41:28,125 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None 2026-03-05 00:41:28,773 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None 2026-03-05 00:41:29,275 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-03-05 00:41:29,852 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None 2026-03-05 00:41:30,297 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2 2026-03-05 00:41:30,297 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate' 2026-03-05 00:41:30,760 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None 2026-03-05 00:41:31,401 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None 2026-03-05 00:41:31,971 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None 2026-03-05 00:41:32,426 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-03-05 00:41:32,968 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None 2026-03-05 00:41:33,388 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2 2026-03-05 00:41:33,388 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names' 2026-03-05 00:41:33,388 [ scc.repo] DEBUG ## Branches found: 2026-03-05 00:41:33,388 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata 2026-03-05 00:41:33,389 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:41:33,389 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:41:33,391 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-03-05 00:41:33,394 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-03-05 00:41:33,394 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-03-05 00:41:33,397 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-03-05 00:41:33,403 [ scc.git] DEBUG Updating 3cd120c..55060a2 2026-03-05 00:41:34,057 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None 2026-03-05 00:41:34,058 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head' 2026-03-05 00:41:34,328 [ scc.git] DEBUG From https://github.com/ome/omero-metadata 2026-03-05 00:41:34,328 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD 2026-03-05 00:41:34,332 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head' 2026-03-05 00:41:34,587 [ scc.git] DEBUG From https://github.com/ome/omero-metadata 2026-03-05 00:41:34,587 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD 2026-03-05 00:41:34,591 [ scc.git] DEBUG Calling 'git fetch origin pull/92/head' 2026-03-05 00:41:34,847 [ scc.git] DEBUG From https://github.com/ome/omero-metadata 2026-03-05 00:41:34,847 [ scc.git] DEBUG * branch refs/pull/92/head -> FETCH_HEAD 2026-03-05 00:41:34,852 [ scc.git] DEBUG ## Unique users: [] 2026-03-05 00:41:34,852 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:41:34,852 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:41:34,854 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102' 2026-03-05 00:41:34,858 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:41:34,860 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102' 2026-03-05 00:41:34,872 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py 2026-03-05 00:41:34,872 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py 2026-03-05 00:41:34,872 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py 2026-03-05 00:41:34,872 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py 2026-03-05 00:41:34,872 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-03-05 00:41:34,873 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-03-05 00:41:34,875 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501' 2026-03-05 00:41:34,879 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action 2026-03-05 00:41:35,021 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:41:35,022 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102' 2026-03-05 00:41:35,026 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501' 2026-03-05 00:41:35,028 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names' Conflicting PR. Removed from build [OMERO-plugins-push#79](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/consoleText) for more details. Possible conflicts: - Upstream changes - src/omero_metadata/cli.py - src/omero_metadata/populate.py --conflicts 2026-03-05 00:41:35,030 [ scc.config] DEBUG Found github.token 2026-03-05 00:41:35,031 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts. 2026-03-05 00:41:35,031 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7' 2026-03-05 00:41:35,034 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:41:35,036 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7' 2026-03-05 00:41:35,049 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py 2026-03-05 00:41:35,049 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py 2026-03-05 00:41:35,049 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py 2026-03-05 00:41:35,049 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-03-05 00:41:35,050 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-03-05 00:41:35,052 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501' 2026-03-05 00:41:35,056 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action 2026-03-05 00:41:35,409 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:41:35,409 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7' 2026-03-05 00:41:35,413 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501' 2026-03-05 00:41:35,416 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate' Conflicting PR. Removed from build [OMERO-plugins-push#79](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/consoleText) for more details. Possible conflicts: - PR #55 kkoz 'Prevent users from creating columns with python keyword names' - src/omero_metadata/populate.py - Upstream changes - src/omero_metadata/populate.py --conflicts 2026-03-05 00:41:35,418 [ scc.config] DEBUG Found github.token 2026-03-05 00:41:35,418 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts. 2026-03-05 00:41:35,418 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...64d33da6022f537d572d4f69a5cec86377b6e78f' 2026-03-05 00:41:35,420 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:41:35,422 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 92 (add resolve_rois to projectwrapper) 64d33da6022f537d572d4f69a5cec86377b6e78f' 2026-03-05 00:41:35,431 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-03-05 00:41:35,435 [ scc.git] DEBUG src/omero_metadata/populate.py | 55 +++++++++++++++++++++++++++++++++++++++++- 2026-03-05 00:41:35,435 [ scc.git] DEBUG 1 file changed, 54 insertions(+), 1 deletion(-) 2026-03-05 00:41:35,823 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:41:35,824 [ scc.git] DEBUG Calling 'git submodule update' 2026-03-05 00:41:35,861 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:41:35,861 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:41:35,863 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-03-05 00:41:35,898 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-03-05 00:41:35,902 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa53b926910> has no local changes 2026-03-05 00:41:35,902 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-metadata Updating 3cd120c..55060a2 Previously merged: - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 92 dominikl 'add resolve_rois to projectwrapper' Conflicting PRs (not included): - PR 55 kkoz 'Prevent users from creating columns with python keyword names' - PR 64 will-moore 'Support images_by_name for Screen and Plate' Generated by OMERO-plugins-push#79 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/)' 2026-03-05 00:41:35,909 [ scc.git] DEBUG [detached HEAD 6121cfc] merge master -Dorg -Ssuccess-only 2026-03-05 00:41:35,909 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:41:35,909 [ scc.repo] DEBUG ## PRs found: 2026-03-05 00:41:36,425 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None 2026-03-05 00:41:36,999 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None 2026-03-05 00:41:37,543 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None 2026-03-05 00:41:38,068 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-03-05 00:41:38,570 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-03-05 00:41:39,295 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None 2026-03-05 00:41:39,708 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2 2026-03-05 00:41:39,709 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-03-05 00:41:40,220 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None 2026-03-05 00:41:40,221 [ scc.repo] DEBUG # ... Include label: dependencies 2026-03-05 00:41:40,835 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None 2026-03-05 00:41:41,397 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-03-05 00:41:41,976 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-03-05 00:41:42,442 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None 2026-03-05 00:41:42,871 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2 2026-03-05 00:41:42,871 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' 2026-03-05 00:41:43,338 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None 2026-03-05 00:41:43,339 [ scc.repo] DEBUG # ... Include label: dependencies 2026-03-05 00:41:43,958 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None 2026-03-05 00:41:44,489 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-03-05 00:41:45,041 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-03-05 00:41:45,494 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None 2026-03-05 00:41:45,937 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2 2026-03-05 00:41:45,937 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' 2026-03-05 00:41:46,416 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None 2026-03-05 00:41:46,924 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None 2026-03-05 00:41:47,379 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None 2026-03-05 00:41:47,893 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None 2026-03-05 00:41:48,403 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None 2026-03-05 00:41:48,875 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None 2026-03-05 00:41:49,349 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None 2026-03-05 00:41:49,351 [ scc.repo] DEBUG ## Branches found: 2026-03-05 00:41:49,351 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade 2026-03-05 00:41:49,351 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:41:49,351 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:41:49,353 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-03-05 00:41:49,356 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-03-05 00:41:49,356 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-03-05 00:41:49,358 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-03-05 00:41:49,361 [ scc.git] DEBUG Already up to date. 2026-03-05 00:41:49,361 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head' 2026-03-05 00:41:49,728 [ scc.git] DEBUG From https://github.com/ome/omero-parade 2026-03-05 00:41:49,728 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD 2026-03-05 00:41:49,732 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head' 2026-03-05 00:41:50,092 [ scc.git] DEBUG From https://github.com/ome/omero-parade 2026-03-05 00:41:50,092 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD 2026-03-05 00:41:50,096 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head' 2026-03-05 00:41:50,360 [ scc.git] DEBUG From https://github.com/ome/omero-parade 2026-03-05 00:41:50,360 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD 2026-03-05 00:41:50,364 [ scc.git] DEBUG ## Unique users: [] 2026-03-05 00:41:50,364 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:41:50,364 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:41:50,366 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0' 2026-03-05 00:41:50,369 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:41:50,371 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0' 2026-03-05 00:41:50,378 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-03-05 00:41:50,381 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++---------------------------- 2026-03-05 00:41:50,381 [ scc.git] DEBUG package.json | 2 +- 2026-03-05 00:41:50,381 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-) 2026-03-05 00:41:50,534 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:41:50,535 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80' 2026-03-05 00:41:50,537 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:41:50,540 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80' 2026-03-05 00:41:50,548 [ scc.git] DEBUG Auto-merging package-lock.json 2026-03-05 00:41:50,548 [ scc.git] DEBUG Auto-merging package.json 2026-03-05 00:41:50,549 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-03-05 00:41:50,552 [ scc.git] DEBUG package-lock.json | 18 ++++++++++-------- 2026-03-05 00:41:50,552 [ scc.git] DEBUG package.json | 2 +- 2026-03-05 00:41:50,552 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-) 2026-03-05 00:41:50,953 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:41:50,954 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0' 2026-03-05 00:41:50,958 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:41:50,960 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0' 2026-03-05 00:41:50,968 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-03-05 00:41:50,971 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-03-05 00:41:50,971 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-03-05 00:41:51,365 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:41:51,366 [ scc.git] DEBUG Calling 'git submodule update' 2026-03-05 00:41:51,403 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:41:51,404 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:41:51,406 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-03-05 00:41:51,443 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-03-05 00:41:51,447 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa53c9ede50> has no local changes 2026-03-05 00:41:51,447 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-parade Excluded PRs: - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft) - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment) - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment) - PR 39 chris-allan 'Expand all for Screens' (exclude comment) Already up to date. Merged PRs: - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Generated by OMERO-plugins-push#79 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/)' 2026-03-05 00:41:51,453 [ scc.git] DEBUG [detached HEAD c0a6649] merge master -Dorg -Ssuccess-only 2026-03-05 00:41:51,453 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:41:51,453 [ scc.repo] DEBUG ## PRs found: 2026-03-05 00:41:51,860 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None 2026-03-05 00:41:52,366 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/16 HTTP/1.1" 200 None 2026-03-05 00:41:52,366 [ scc.repo] DEBUG # ... Include label: dependencies 2026-03-05 00:41:53,117 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None 2026-03-05 00:41:53,660 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-03-05 00:41:54,322 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-03-05 00:41:54,887 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None 2026-03-05 00:41:55,343 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/5381b9f25e1666d81d236039a1317276291e9b2e?per_page=1 HTTP/1.1" 200 2 2026-03-05 00:41:55,344 [ scc.repo] DEBUG - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-03-05 00:41:55,344 [ scc.repo] DEBUG ## Branches found: 2026-03-05 00:41:55,344 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools 2026-03-05 00:41:55,344 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:41:55,344 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:41:55,347 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-03-05 00:41:55,349 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-03-05 00:41:55,349 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-03-05 00:41:55,351 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-03-05 00:41:55,355 [ scc.git] DEBUG Already up to date. 2026-03-05 00:41:55,355 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head' 2026-03-05 00:41:55,744 [ scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools 2026-03-05 00:41:55,744 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD 2026-03-05 00:41:55,747 [ scc.git] DEBUG ## Unique users: [] 2026-03-05 00:41:55,747 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:41:55,747 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:41:55,750 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5381b9f25e1666d81d236039a1317276291e9b2e' 2026-03-05 00:41:55,753 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:41:55,755 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 5381b9f25e1666d81d236039a1317276291e9b2e' 2026-03-05 00:41:55,762 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-03-05 00:41:55,764 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-03-05 00:41:55,764 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-03-05 00:41:55,907 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:41:55,907 [ scc.git] DEBUG Calling 'git submodule update' 2026-03-05 00:41:55,945 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:41:55,945 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:41:55,947 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-03-05 00:41:55,983 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-03-05 00:41:55,987 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa53cb37250> has no local changes 2026-03-05 00:41:55,987 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-prometheus-tools Already up to date. Merged PRs: - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#79 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/)' 2026-03-05 00:41:55,992 [ scc.git] DEBUG [detached HEAD 8404fd4] merge master -Dorg -Ssuccess-only 2026-03-05 00:41:55,993 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:41:55,993 [ scc.repo] DEBUG ## PRs found: 2026-03-05 00:41:56,424 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None 2026-03-05 00:41:56,916 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/34 HTTP/1.1" 200 None 2026-03-05 00:41:57,368 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/34/comments HTTP/1.1" 200 None 2026-03-05 00:41:57,369 [ scc.repo] DEBUG # ... Include label: dependencies 2026-03-05 00:41:57,976 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None 2026-03-05 00:41:58,639 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-03-05 00:41:59,215 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-03-05 00:42:00,070 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None 2026-03-05 00:42:00,520 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/149bb248277256d589ea0db597c04739e8134301?per_page=1 HTTP/1.1" 200 None 2026-03-05 00:42:00,999 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None 2026-03-05 00:42:01,432 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/status HTTP/1.1" 200 None 2026-03-05 00:42:01,432 [ scc.repo] DEBUG - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-03-05 00:42:01,922 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None 2026-03-05 00:42:01,923 [ scc.repo] DEBUG ## Branches found: 2026-03-05 00:42:01,923 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois 2026-03-05 00:42:01,923 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:42:01,923 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:42:01,926 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-03-05 00:42:01,928 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-03-05 00:42:01,928 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-03-05 00:42:01,931 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-03-05 00:42:01,939 [ scc.git] DEBUG Updating bdfeb5e..fc9ff96 2026-03-05 00:42:02,634 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls/36 HTTP/1.1" 200 None 2026-03-05 00:42:03,451 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls/35 HTTP/1.1" 200 None 2026-03-05 00:42:03,452 [ scc.git] DEBUG Calling 'git fetch origin pull/34/head' 2026-03-05 00:42:03,740 [ scc.git] DEBUG From https://github.com/ome/omero-rois 2026-03-05 00:42:03,740 [ scc.git] DEBUG * branch refs/pull/34/head -> FETCH_HEAD 2026-03-05 00:42:03,743 [ scc.git] DEBUG ## Unique users: [] 2026-03-05 00:42:03,743 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:42:03,743 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:42:03,746 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...149bb248277256d589ea0db597c04739e8134301' 2026-03-05 00:42:03,749 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:42:03,751 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 34 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 149bb248277256d589ea0db597c04739e8134301' 2026-03-05 00:42:03,758 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml 2026-03-05 00:42:03,758 [ scc.git] DEBUG CONFLICT (content): Merge conflict in .github/workflows/publish_pypi.yml 2026-03-05 00:42:03,758 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-03-05 00:42:03,758 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-03-05 00:42:03,760 [ scc.git] DEBUG Calling 'git reset --hard fc9ff96901ce7b92e3ba51327ba7ba64fff76959' 2026-03-05 00:42:03,764 [ scc.git] DEBUG HEAD is now at fc9ff96 Bump version: 0.4.1 → 0.4.2.dev0 2026-03-05 00:42:03,906 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:42:03,907 [ scc.git] DEBUG Calling 'git merge-base fc9ff96901ce7b92e3ba51327ba7ba64fff76959 149bb248277256d589ea0db597c04739e8134301' 2026-03-05 00:42:03,909 [ scc.git] DEBUG Calling 'git diff --name-only bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9..fc9ff96901ce7b92e3ba51327ba7ba64fff76959' 2026-03-05 00:42:03,912 [ scc.git] INFO - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Conflicting PR. Removed from build [OMERO-plugins-push#79](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/consoleText) for more details. Possible conflicts: - Upstream changes - .github/workflows/publish_pypi.yml --conflicts 2026-03-05 00:42:03,914 [ scc.config] DEBUG Found github.token 2026-03-05 00:42:03,914 [ scc.git] DEBUG Not adding comment to issue #34, already --conflicts. 2026-03-05 00:42:03,914 [ scc.git] DEBUG Calling 'git submodule update' 2026-03-05 00:42:03,951 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:42:03,952 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:42:03,954 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-03-05 00:42:03,990 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-03-05 00:42:03,993 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa53b91cbd0> has no local changes 2026-03-05 00:42:03,993 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-rois Excluded PRs: - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) Updating bdfeb5e..fc9ff96 Previously merged: - PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml' - PR 35 will-moore 'Add roi to array functions' Conflicting PRs (not included): - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#79 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/)' 2026-03-05 00:42:03,999 [ scc.git] DEBUG [detached HEAD d008f1b] merge master -Dorg -Ssuccess-only 2026-03-05 00:42:03,999 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:42:03,999 [ scc.repo] DEBUG ## PRs found: 2026-03-05 00:42:04,488 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None 2026-03-05 00:42:05,181 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/22 HTTP/1.1" 200 None 2026-03-05 00:42:05,182 [ scc.repo] DEBUG # ... Include label: dependencies 2026-03-05 00:42:05,733 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None 2026-03-05 00:42:06,241 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-03-05 00:42:06,733 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-03-05 00:42:07,221 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None 2026-03-05 00:42:07,647 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/8b27e47a330555e99e9594f0c4b546946f4f98aa?per_page=1 HTTP/1.1" 200 2 2026-03-05 00:42:07,647 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-03-05 00:42:08,147 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None 2026-03-05 00:42:08,602 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None 2026-03-05 00:42:09,196 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None 2026-03-05 00:42:09,730 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-03-05 00:42:10,250 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None 2026-03-05 00:42:10,681 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2 2026-03-05 00:42:10,681 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)' 2026-03-05 00:42:10,681 [ scc.repo] DEBUG ## Branches found: 2026-03-05 00:42:10,681 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup 2026-03-05 00:42:10,682 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:42:10,682 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:42:10,684 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-03-05 00:42:10,687 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-03-05 00:42:10,687 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-03-05 00:42:10,689 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-03-05 00:42:10,692 [ scc.git] DEBUG Already up to date. 2026-03-05 00:42:10,692 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head' 2026-03-05 00:42:11,097 [ scc.git] DEBUG From https://github.com/ome/omero-signup 2026-03-05 00:42:11,097 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD 2026-03-05 00:42:11,101 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head' 2026-03-05 00:42:11,360 [ scc.git] DEBUG From https://github.com/ome/omero-signup 2026-03-05 00:42:11,360 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD 2026-03-05 00:42:11,364 [ scc.git] DEBUG ## Unique users: [] 2026-03-05 00:42:11,364 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:42:11,364 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:42:11,367 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d' 2026-03-05 00:42:11,370 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:42:11,372 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d' 2026-03-05 00:42:11,379 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py 2026-03-05 00:42:11,379 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py 2026-03-05 00:42:11,379 [ scc.git] DEBUG Auto-merging omero_signup/urls.py 2026-03-05 00:42:11,379 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py 2026-03-05 00:42:11,379 [ scc.git] DEBUG Auto-merging omero_signup/views.py 2026-03-05 00:42:11,379 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py 2026-03-05 00:42:11,379 [ scc.git] DEBUG Auto-merging setup.py 2026-03-05 00:42:11,379 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py 2026-03-05 00:42:11,379 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-03-05 00:42:11,380 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-03-05 00:42:11,382 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e' 2026-03-05 00:42:11,386 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build 2026-03-05 00:42:11,543 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:42:11,543 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d' 2026-03-05 00:42:11,546 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e' 2026-03-05 00:42:11,549 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)' Conflicting PR. Removed from build [OMERO-plugins-push#79](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/consoleText) for more details. Possible conflicts: - Upstream changes - omero_signup/urls.py - omero_signup/views.py - omero_signup/signup_settings.py - setup.py --conflicts 2026-03-05 00:42:11,551 [ scc.config] DEBUG Found github.token 2026-03-05 00:42:11,551 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts. 2026-03-05 00:42:11,551 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8b27e47a330555e99e9594f0c4b546946f4f98aa' 2026-03-05 00:42:11,554 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:42:11,556 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8b27e47a330555e99e9594f0c4b546946f4f98aa' 2026-03-05 00:42:11,562 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-03-05 00:42:11,565 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-03-05 00:42:11,565 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-03-05 00:42:11,955 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:42:11,955 [ scc.git] DEBUG Calling 'git submodule update' 2026-03-05 00:42:11,991 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:42:11,992 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:42:11,994 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-03-05 00:42:12,030 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-03-05 00:42:12,033 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa53b931710> has no local changes 2026-03-05 00:42:12,034 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-signup Already up to date. Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Conflicting PRs (not included): - PR 14 manics 'Add pre-commit (black, flake8)' Generated by OMERO-plugins-push#79 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/)' 2026-03-05 00:42:12,039 [ scc.git] DEBUG [detached HEAD 8608017] merge master -Dorg -Ssuccess-only 2026-03-05 00:42:12,039 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:42:12,039 [ scc.repo] DEBUG ## PRs found: 2026-03-05 00:42:12,518 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None 2026-03-05 00:42:13,037 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None 2026-03-05 00:42:13,532 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None 2026-03-05 00:42:13,980 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74/comments HTTP/1.1" 200 None 2026-03-05 00:42:14,500 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None 2026-03-05 00:42:14,954 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-03-05 00:42:15,498 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None 2026-03-05 00:42:15,937 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/c18c080227e97899382d3464baa7c7885a621623?per_page=1 HTTP/1.1" 200 2 2026-03-05 00:42:15,937 [ scc.repo] DEBUG - PR 74 joshmoore 'Add 'ms' target for ./docker' 2026-03-05 00:42:15,938 [ scc.repo] DEBUG ## Branches found: 2026-03-05 00:42:15,938 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra 2026-03-05 00:42:15,938 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:42:15,938 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:42:15,940 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-03-05 00:42:15,943 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-03-05 00:42:15,943 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-03-05 00:42:15,945 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-03-05 00:42:15,952 [ scc.git] DEBUG Updating cda3ec6..c8a0015 2026-03-05 00:42:16,603 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/84 HTTP/1.1" 200 None 2026-03-05 00:42:17,257 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/82 HTTP/1.1" 200 None 2026-03-05 00:42:18,003 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/81 HTTP/1.1" 200 None 2026-03-05 00:42:18,003 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head' 2026-03-05 00:42:18,285 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra 2026-03-05 00:42:18,285 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD 2026-03-05 00:42:18,289 [ scc.git] DEBUG ## Unique users: [] 2026-03-05 00:42:18,289 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:42:18,289 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:42:18,291 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c18c080227e97899382d3464baa7c7885a621623' 2026-03-05 00:42:18,294 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:42:18,296 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (Add 'ms' target for ./docker) c18c080227e97899382d3464baa7c7885a621623' 2026-03-05 00:42:18,302 [ scc.git] DEBUG Auto-merging .github/workflows/main.yml 2026-03-05 00:42:18,303 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-03-05 00:42:18,307 [ scc.git] DEBUG .github/workflows/main.yml | 8 ++++++++ 2026-03-05 00:42:18,307 [ scc.git] DEBUG docker | 22 ++++++++++++++++++++++ 2026-03-05 00:42:18,307 [ scc.git] DEBUG ms/compose.yml | 11 +++++++++++ 2026-03-05 00:42:18,307 [ scc.git] DEBUG ms/example/Dockerfile | 13 +++++++++++++ 2026-03-05 00:42:18,307 [ scc.git] DEBUG ms/test | 2 ++ 2026-03-05 00:42:18,307 [ scc.git] DEBUG 5 files changed, 56 insertions(+) 2026-03-05 00:42:18,307 [ scc.git] DEBUG create mode 100644 ms/compose.yml 2026-03-05 00:42:18,307 [ scc.git] DEBUG create mode 100644 ms/example/Dockerfile 2026-03-05 00:42:18,307 [ scc.git] DEBUG create mode 100755 ms/test 2026-03-05 00:42:18,450 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:42:18,451 [ scc.git] DEBUG Calling 'git submodule update' 2026-03-05 00:42:18,488 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:42:18,488 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:42:18,490 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-03-05 00:42:18,527 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-03-05 00:42:18,530 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa53b978850> has no local changes 2026-03-05 00:42:18,530 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: openmicroscopy/omero-test-infra Excluded PRs: - PR 75 marimeireles 'Microservices' (user: marimeireles) Updating cda3ec6..c8a0015 Previously merged: - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT' - PR 82 jburel 'Upgrade python' - PR 81 erickmartins 'add ulimits to omero-server container' Merged PRs: - PR 74 joshmoore 'Add 'ms' target for ./docker' Generated by OMERO-plugins-push#79 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/)' 2026-03-05 00:42:18,536 [ scc.git] DEBUG [detached HEAD 958e3d9] merge master -Dorg -Ssuccess-only 2026-03-05 00:42:18,536 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:42:18,536 [ scc.repo] DEBUG ## PRs found: 2026-03-05 00:42:18,930 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 None 2026-03-05 00:42:19,614 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/issues/14 HTTP/1.1" 200 None 2026-03-05 00:42:19,615 [ scc.repo] DEBUG # ... Include label: dependencies 2026-03-05 00:42:20,216 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None 2026-03-05 00:42:20,735 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-03-05 00:42:21,253 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-03-05 00:42:21,735 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None 2026-03-05 00:42:22,168 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/statuses/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?per_page=1 HTTP/1.1" 200 2 2026-03-05 00:42:22,169 [ scc.repo] DEBUG - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-03-05 00:42:22,169 [ scc.repo] DEBUG ## Branches found: 2026-03-05 00:42:22,169 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload 2026-03-05 00:42:22,169 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:42:22,169 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:42:22,171 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-03-05 00:42:22,174 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-03-05 00:42:22,174 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-03-05 00:42:22,176 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-03-05 00:42:22,179 [ scc.git] DEBUG Already up to date. 2026-03-05 00:42:22,179 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head' 2026-03-05 00:42:22,456 [ scc.git] DEBUG From https://github.com/ome/omero-upload 2026-03-05 00:42:22,456 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD 2026-03-05 00:42:22,459 [ scc.git] DEBUG ## Unique users: [] 2026-03-05 00:42:22,459 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:42:22,459 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:42:22,462 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1a4dbe9a31854f4f65c509ea929debf3319ba1ea' 2026-03-05 00:42:22,464 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:42:22,466 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 1a4dbe9a31854f4f65c509ea929debf3319ba1ea' 2026-03-05 00:42:22,473 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-03-05 00:42:22,475 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-03-05 00:42:22,475 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-03-05 00:42:22,670 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:42:22,670 [ scc.git] DEBUG Calling 'git submodule update' 2026-03-05 00:42:22,709 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:42:22,709 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:42:22,711 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-03-05 00:42:22,749 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-03-05 00:42:22,752 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa53b98ca90> has no local changes 2026-03-05 00:42:22,752 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-upload Already up to date. Merged PRs: - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#79 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/)' 2026-03-05 00:42:22,758 [ scc.git] DEBUG [detached HEAD db68b7f] merge master -Dorg -Ssuccess-only 2026-03-05 00:42:22,758 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:42:22,758 [ scc.repo] DEBUG ## PRs found: 2026-03-05 00:42:23,193 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 None 2026-03-05 00:42:23,749 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/issues/22 HTTP/1.1" 200 None 2026-03-05 00:42:23,750 [ scc.repo] DEBUG # ... Include label: dependencies 2026-03-05 00:42:24,298 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None 2026-03-05 00:42:24,809 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-03-05 00:42:25,304 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-03-05 00:42:25,890 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None 2026-03-05 00:42:26,332 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/statuses/2ee819462af52bf2878fadf06d6ebdbafb8f1902?per_page=1 HTTP/1.1" 200 2 2026-03-05 00:42:26,333 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-03-05 00:42:26,333 [ scc.repo] DEBUG ## Branches found: 2026-03-05 00:42:26,333 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope 2026-03-05 00:42:26,333 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:42:26,333 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:42:26,335 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-03-05 00:42:26,338 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-03-05 00:42:26,338 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-03-05 00:42:26,340 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-03-05 00:42:26,347 [ scc.git] DEBUG Updating deab817..160d894 2026-03-05 00:42:27,104 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None 2026-03-05 00:42:27,105 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head' 2026-03-05 00:42:27,386 [ scc.git] DEBUG From https://github.com/ome/omero-virtual-microscope 2026-03-05 00:42:27,386 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD 2026-03-05 00:42:27,390 [ scc.git] DEBUG ## Unique users: [] 2026-03-05 00:42:27,390 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:42:27,390 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:42:27,392 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee819462af52bf2878fadf06d6ebdbafb8f1902' 2026-03-05 00:42:27,394 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:42:27,396 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 2ee819462af52bf2878fadf06d6ebdbafb8f1902' 2026-03-05 00:42:27,402 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-03-05 00:42:27,406 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-03-05 00:42:27,406 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-03-05 00:42:27,562 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:42:27,563 [ scc.git] DEBUG Calling 'git submodule update' 2026-03-05 00:42:27,600 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:42:27,600 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:42:27,602 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-03-05 00:42:27,638 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-03-05 00:42:27,641 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa53b963650> has no local changes 2026-03-05 00:42:27,641 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-virtual-microscope Updating deab817..160d894 Previously merged: - PR 20 jburel 'Build' Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#79 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/)' 2026-03-05 00:42:27,647 [ scc.git] DEBUG [detached HEAD fc1275b] merge master -Dorg -Ssuccess-only 2026-03-05 00:42:27,647 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:42:27,647 [ scc.git] INFO Overriding base-branch from master to main 2026-03-05 00:42:27,647 [ scc.repo] DEBUG ## PRs found: 2026-03-05 00:42:28,142 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None 2026-03-05 00:42:28,704 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None 2026-03-05 00:42:29,186 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21/comments HTTP/1.1" 200 None 2026-03-05 00:42:29,722 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None 2026-03-05 00:42:30,210 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-03-05 00:42:30,773 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-03-05 00:42:31,248 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None 2026-03-05 00:42:31,662 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/d07067753650282c9e8cdbbeae37897b7ed0d4cc?per_page=1 HTTP/1.1" 200 2 2026-03-05 00:42:31,663 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import' 2026-03-05 00:42:32,149 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None 2026-03-05 00:42:32,605 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None 2026-03-05 00:42:33,078 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None 2026-03-05 00:42:33,604 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None 2026-03-05 00:42:34,111 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-03-05 00:42:34,659 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None 2026-03-05 00:42:35,088 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2 2026-03-05 00:42:35,088 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' 2026-03-05 00:42:35,089 [ scc.repo] DEBUG ## Branches found: 2026-03-05 00:42:35,089 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr 2026-03-05 00:42:35,089 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:42:35,089 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:42:35,091 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main' 2026-03-05 00:42:35,094 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-03-05 00:42:35,094 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main' 2026-03-05 00:42:35,096 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main' 2026-03-05 00:42:35,103 [ scc.git] DEBUG Updating 8f3c313..4e1e685 2026-03-05 00:42:35,763 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/23 HTTP/1.1" 200 None 2026-03-05 00:42:36,549 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/20 HTTP/1.1" 200 None 2026-03-05 00:42:36,551 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head' 2026-03-05 00:42:36,930 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr 2026-03-05 00:42:36,930 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD 2026-03-05 00:42:36,934 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head' 2026-03-05 00:42:37,198 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr 2026-03-05 00:42:37,198 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD 2026-03-05 00:42:37,202 [ scc.git] DEBUG ## Unique users: [] 2026-03-05 00:42:37,202 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:42:37,202 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:42:37,204 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8' 2026-03-05 00:42:37,207 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:42:37,209 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8' 2026-03-05 00:42:37,217 [ scc.git] DEBUG Auto-merging README.rst 2026-03-05 00:42:37,217 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py 2026-03-05 00:42:37,217 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py 2026-03-05 00:42:37,217 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py 2026-03-05 00:42:37,217 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-03-05 00:42:37,217 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-03-05 00:42:37,220 [ scc.git] DEBUG Calling 'git reset --hard 4e1e685dff22136abfd2626f6fd6eaf985aba368' 2026-03-05 00:42:37,223 [ scc.git] DEBUG HEAD is now at 4e1e685 Merge pull request #23 from lubianat/patch-1 2026-03-05 00:42:37,529 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:42:37,529 [ scc.git] DEBUG Calling 'git merge-base 4e1e685dff22136abfd2626f6fd6eaf985aba368 85cf4c893f393da6763bf4cee2a308832a41a9e8' 2026-03-05 00:42:37,532 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..4e1e685dff22136abfd2626f6fd6eaf985aba368' 2026-03-05 00:42:37,534 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' Conflicting PR. Removed from build [OMERO-plugins-push#79](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/consoleText) for more details. Possible conflicts: - Upstream changes - omero_web_zarr/urls.py --conflicts 2026-03-05 00:42:37,536 [ scc.config] DEBUG Found github.token 2026-03-05 00:42:37,536 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts. 2026-03-05 00:42:37,536 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d07067753650282c9e8cdbbeae37897b7ed0d4cc' 2026-03-05 00:42:37,539 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:42:37,541 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) d07067753650282c9e8cdbbeae37897b7ed0d4cc' 2026-03-05 00:42:37,549 [ scc.git] DEBUG Auto-merging README.rst 2026-03-05 00:42:37,549 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py 2026-03-05 00:42:37,550 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-03-05 00:42:37,553 [ scc.git] DEBUG README.rst | 3 + 2026-03-05 00:42:37,553 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++ 2026-03-05 00:42:37,553 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 + 2026-03-05 00:42:37,553 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++- 2026-03-05 00:42:37,553 [ scc.git] DEBUG setup.py | 5 +- 2026-03-05 00:42:37,553 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-) 2026-03-05 00:42:37,554 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html 2026-03-05 00:42:37,916 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:42:37,917 [ scc.git] DEBUG Calling 'git submodule update' 2026-03-05 00:42:37,955 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:42:37,955 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:42:37,957 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-03-05 00:42:37,994 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-03-05 00:42:37,997 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa53b98b090> has no local changes 2026-03-05 00:42:37,997 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-web-zarr Excluded PRs: - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft) Updating 8f3c313..4e1e685 Previously merged: - PR 23 lubianat 'Fix mix of .rst and .md on README' - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints' Merged PRs: - PR 21 will-moore 'Web zarr import' Conflicting PRs (not included): - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' Generated by OMERO-plugins-push#79 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/)' 2026-03-05 00:42:38,003 [ scc.git] DEBUG [detached HEAD b70c6bd] merge master -Dorg -Ssuccess-only 2026-03-05 00:42:38,003 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:42:38,004 [ scc.repo] DEBUG ## PRs found: 2026-03-05 00:42:38,444 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 None 2026-03-05 00:42:38,968 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/issues/25 HTTP/1.1" 200 None 2026-03-05 00:42:38,969 [ scc.repo] DEBUG # ... Include label: dependencies 2026-03-05 00:42:39,492 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None 2026-03-05 00:42:40,079 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-03-05 00:42:40,601 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-03-05 00:42:41,165 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None 2026-03-05 00:42:41,620 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/statuses/c73bedb717b9ecce0af666245d3486aa5a2dafe9?per_page=1 HTTP/1.1" 200 2 2026-03-05 00:42:41,621 [ scc.repo] DEBUG - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-03-05 00:42:41,621 [ scc.repo] DEBUG ## Branches found: 2026-03-05 00:42:41,621 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror 2026-03-05 00:42:41,621 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:42:41,621 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:42:41,623 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-03-05 00:42:41,626 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-03-05 00:42:41,626 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-03-05 00:42:41,629 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-03-05 00:42:41,632 [ scc.git] DEBUG Already up to date. 2026-03-05 00:42:41,632 [ scc.git] DEBUG Calling 'git fetch origin pull/25/head' 2026-03-05 00:42:41,908 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-weberror 2026-03-05 00:42:41,908 [ scc.git] DEBUG * branch refs/pull/25/head -> FETCH_HEAD 2026-03-05 00:42:41,912 [ scc.git] DEBUG ## Unique users: [] 2026-03-05 00:42:41,913 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:42:41,913 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:42:41,915 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c73bedb717b9ecce0af666245d3486aa5a2dafe9' 2026-03-05 00:42:41,917 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:42:41,919 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) c73bedb717b9ecce0af666245d3486aa5a2dafe9' 2026-03-05 00:42:41,926 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-03-05 00:42:41,929 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-03-05 00:42:41,929 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-03-05 00:42:42,068 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:42:42,068 [ scc.git] DEBUG Calling 'git submodule update' 2026-03-05 00:42:42,106 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:42:42,106 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:42:42,108 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-03-05 00:42:42,144 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-03-05 00:42:42,147 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa52c6fe210> has no local changes 2026-03-05 00:42:42,147 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: openmicroscopy/omero-weberror Already up to date. Merged PRs: - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#79 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/)' 2026-03-05 00:42:42,153 [ scc.git] DEBUG [detached HEAD 78ceae0] merge master -Dorg -Ssuccess-only 2026-03-05 00:42:42,153 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:42:42,153 [ scc.repo] DEBUG ## PRs found: 2026-03-05 00:42:42,601 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 None 2026-03-05 00:42:43,102 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/issues/37 HTTP/1.1" 200 None 2026-03-05 00:42:43,103 [ scc.repo] DEBUG # ... Include label: dependencies 2026-03-05 00:42:43,671 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None 2026-03-05 00:42:44,191 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-03-05 00:42:44,742 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-03-05 00:42:45,213 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None 2026-03-05 00:42:45,662 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/statuses/8cf5f7e65ae8e945b134e41e77bc13a785aff478?per_page=1 HTTP/1.1" 200 2 2026-03-05 00:42:45,662 [ scc.repo] DEBUG - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-03-05 00:42:45,662 [ scc.repo] DEBUG ## Branches found: 2026-03-05 00:42:45,663 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest 2026-03-05 00:42:45,663 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:42:45,663 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:42:45,665 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-03-05 00:42:45,667 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-03-05 00:42:45,667 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-03-05 00:42:45,670 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-03-05 00:42:45,673 [ scc.git] DEBUG Already up to date. 2026-03-05 00:42:45,673 [ scc.git] DEBUG Calling 'git fetch origin pull/37/head' 2026-03-05 00:42:46,094 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-webtest 2026-03-05 00:42:46,094 [ scc.git] DEBUG * branch refs/pull/37/head -> FETCH_HEAD 2026-03-05 00:42:46,099 [ scc.git] DEBUG ## Unique users: [] 2026-03-05 00:42:46,099 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:42:46,099 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:42:46,101 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8cf5f7e65ae8e945b134e41e77bc13a785aff478' 2026-03-05 00:42:46,104 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:42:46,106 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 37 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8cf5f7e65ae8e945b134e41e77bc13a785aff478' 2026-03-05 00:42:46,113 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-03-05 00:42:46,115 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-03-05 00:42:46,115 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-03-05 00:42:46,260 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:42:46,261 [ scc.git] DEBUG Calling 'git submodule update' 2026-03-05 00:42:46,299 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:42:46,299 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:42:46,301 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-03-05 00:42:46,337 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-03-05 00:42:46,340 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa52c715d90> has no local changes 2026-03-05 00:42:46,340 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: openmicroscopy/omero-webtest Already up to date. Merged PRs: - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#79 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/)' 2026-03-05 00:42:46,346 [ scc.git] DEBUG [detached HEAD 8a6ef31] merge master -Dorg -Ssuccess-only 2026-03-05 00:42:46,346 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:42:46,346 [ scc.repo] DEBUG ## PRs found: 2026-03-05 00:42:46,689 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 2 2026-03-05 00:42:46,689 [ scc.repo] DEBUG ## Branches found: 2026-03-05 00:42:46,690 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway 2026-03-05 00:42:46,690 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:42:46,690 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:42:46,692 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-03-05 00:42:46,694 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-03-05 00:42:46,694 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-03-05 00:42:46,696 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-03-05 00:42:46,699 [ scc.git] DEBUG Already up to date. 2026-03-05 00:42:46,699 [ scc.git] DEBUG ## Unique users: [] 2026-03-05 00:42:46,699 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:42:46,699 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:42:46,701 [ scc.git] DEBUG Calling 'git submodule update' 2026-03-05 00:42:46,738 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:42:46,738 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:42:46,740 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-03-05 00:42:46,776 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-03-05 00:42:46,779 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa53cb018d0> has no local changes 2026-03-05 00:42:46,779 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/rOMERO-gateway Already up to date. Generated by OMERO-plugins-push#79 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/)' 2026-03-05 00:42:46,785 [ scc.git] DEBUG [detached HEAD 8e9ef03] merge master -Dorg -Ssuccess-only 2026-03-05 00:42:46,785 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:42:46,785 [ scc.git] INFO Overriding base-branch from master to develop 2026-03-05 00:42:46,785 [ scc.repo] DEBUG ## PRs found: 2026-03-05 00:42:47,108 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 2 2026-03-05 00:42:47,109 [ scc.repo] DEBUG ## Branches found: 2026-03-05 00:42:47,109 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts 2026-03-05 00:42:47,109 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:42:47,109 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:42:47,111 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop' 2026-03-05 00:42:47,113 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-03-05 00:42:47,113 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop' 2026-03-05 00:42:47,116 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop' 2026-03-05 00:42:47,128 [ scc.git] DEBUG Updating 4b4c755..5b4d768 2026-03-05 00:42:47,816 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/231 HTTP/1.1" 200 None 2026-03-05 00:42:48,451 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/229 HTTP/1.1" 200 None 2026-03-05 00:42:49,463 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/223 HTTP/1.1" 200 None 2026-03-05 00:42:50,120 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/230 HTTP/1.1" 200 None 2026-03-05 00:42:50,750 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/228 HTTP/1.1" 200 None 2026-03-05 00:42:51,429 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None 2026-03-05 00:42:52,147 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None 2026-03-05 00:42:52,148 [ scc.git] DEBUG ## Unique users: [] 2026-03-05 00:42:52,148 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:42:52,148 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:42:52,151 [ scc.git] DEBUG Calling 'git submodule update' 2026-03-05 00:42:52,189 [ scc.git] DEBUG Get sha1 of %s 2026-03-05 00:42:52,189 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-03-05 00:42:52,191 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-03-05 00:42:52,228 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-03-05 00:42:52,232 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa53cb10210> has no local changes 2026-03-05 00:42:52,232 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/scripts Updating 4b4c755..5b4d768 Previously merged: - PR 231 jburel 'Create Release ' - PR 229 Rdornier 'Adding support for custom user label' - PR 223 will-moore 'don't attempt ROI stats on big images' - PR 230 Rdornier 'Import from csv fix' - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows' - PR 227 jburel 'Replace tostring by tobytes' - PR 225 will-moore 'Fix param names and assertion texts in tests' Generated by OMERO-plugins-push#79 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/)' 2026-03-05 00:42:52,238 [ scc.git] DEBUG [detached HEAD fd430e1] merge master -Dorg -Ssuccess-only 2026-03-05 00:42:52,239 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:42:52,239 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-03-05 00:42:52,308 [ scc.config] DEBUG Found submodule.minimal-omero-client.url 2026-03-05 00:42:52,539 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:42:52,544 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch 2026-03-05 00:42:52,546 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url 2026-03-05 00:42:53,097 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:42:53,103 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch 2026-03-05 00:42:53,105 [ scc.config] DEBUG Found submodule.omero-cli-render.url 2026-03-05 00:42:53,482 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:42:53,488 [ scc.config] DEBUG Found submodule.omero-cli-render.branch 2026-03-05 00:42:53,490 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url 2026-03-05 00:42:53,878 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:42:53,886 [ scc.config] DEBUG Found submodule.omero-figure.url 2026-03-05 00:42:54,274 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:42:54,278 [ scc.config] DEBUG Found submodule.omero-figure.branch 2026-03-05 00:42:54,280 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url 2026-03-05 00:42:54,692 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:42:54,698 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch 2026-03-05 00:42:54,699 [ scc.config] DEBUG Found submodule.omero-gallery.url 2026-03-05 00:42:55,082 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:42:55,087 [ scc.config] DEBUG Found submodule.omero-gallery.branch 2026-03-05 00:42:55,089 [ scc.config] DEBUG Found submodule.omero-iviewer.url 2026-03-05 00:42:55,476 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:42:55,481 [ scc.config] DEBUG Found submodule.omero-iviewer.branch 2026-03-05 00:42:55,483 [ scc.config] DEBUG Found submodule.omero-mapr.url 2026-03-05 00:42:55,880 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:42:55,885 [ scc.config] DEBUG Found submodule.omero-mapr.branch 2026-03-05 00:42:55,887 [ scc.config] DEBUG Found submodule.omero-metadata.url 2026-03-05 00:42:56,267 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:42:56,272 [ scc.config] DEBUG Found submodule.omero-metadata.branch 2026-03-05 00:42:56,274 [ scc.config] DEBUG Found submodule.omero-parade.url 2026-03-05 00:42:56,801 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:42:56,806 [ scc.config] DEBUG Found submodule.omero-parade.branch 2026-03-05 00:42:56,808 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url 2026-03-05 00:42:57,211 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:42:57,216 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch 2026-03-05 00:42:57,218 [ scc.config] DEBUG Found submodule.omero-rois.url 2026-03-05 00:42:57,629 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:42:57,635 [ scc.config] DEBUG Found submodule.omero-signup.url 2026-03-05 00:42:58,029 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:42:58,036 [ scc.config] DEBUG Found submodule.omero-test-infra.url 2026-03-05 00:42:58,420 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:42:58,425 [ scc.config] DEBUG Found submodule.omero-test-infra.branch 2026-03-05 00:42:58,427 [ scc.config] DEBUG Found submodule.omero-upload.url 2026-03-05 00:42:58,809 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:42:58,816 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url 2026-03-05 00:42:59,202 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:42:59,209 [ scc.config] DEBUG Found submodule.omero-web-zarr.url 2026-03-05 00:42:59,613 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:42:59,617 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch 2026-03-05 00:42:59,619 [ scc.config] DEBUG Found submodule.omero-weberror.url 2026-03-05 00:43:00,008 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:43:00,013 [ scc.config] DEBUG Found submodule.omero-weberror.branch 2026-03-05 00:43:00,015 [ scc.config] DEBUG Found submodule.omero-webtest.url 2026-03-05 00:43:00,396 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:43:00,400 [ scc.config] DEBUG Found submodule.omero-webtest.branch 2026-03-05 00:43:00,402 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url 2026-03-05 00:43:00,804 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:43:00,809 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch 2026-03-05 00:43:00,811 [ scc.config] DEBUG Found submodule.scripts.url 2026-03-05 00:43:01,205 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-03-05 00:43:01,209 [ scc.config] DEBUG Found submodule.scripts.branch 2026-03-05 00:43:01,210 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-03-05 00:43:01,287 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa53c9dfad0> has local changes 2026-03-05 00:43:01,287 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-plugins Already up to date. Merged PRs: - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' Repository: ome/minimal-omero-client Already up to date. Repository: ome/omero-cli-duplicate Excluded PRs: - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment) Already up to date. Merged PRs: - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-cli-render Excluded PRs: - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft) Updating ce6e13c..68b7303 Previously merged: - PR 74 jburel 'Replace manual changelog by automated GH release step' - PR 75 jburel 'Sort the new channels to ensure settings are set' - PR 71 dominikl 'Escape slash character in image names' - PR 69 dominikl 'Fix help text for impo/export commands' Merged PRs: - PR 59 will-moore 'Apply settings to Plate' Repository: ome/omero-cli-zarr Excluded PRs: - PR 181 will-moore 'Add labels support for import' (exclude comment) - PR 170 will-moore 'Use ome zarr models py' (stage: draft) - PR 167 dominikl 'Add extinfo command' (stage: draft) - PR 166 will-moore 'Downsample scale option' (stage: draft) - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment) Updating 11d3587..9f844b8 Previously merged: - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' - PR 192 jburel 'Set Omero pixel size' - PR 186 jburel 'Create release from tag' - PR 187 dominikl 'Fix target-by-name option' - PR 180 will-moore 'Import command' - PR 179 will-moore 'Changelog 0.6.0' - PR 177 jburel 'Replace fromstring by frombuffer' - PR 175 will-moore 'Pin ome-zarr-py <0.12.0' - PR 147 will-moore 'Name option' - PR 173 will-moore 'Add test_export_plate_polygons()' - PR 171 will-moore 'Initial addition of integration tests' - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Conflicting PRs (not included): - PR 174 will-moore 'Skip wells' - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' - PR 182 will-moore 'Revert "Remove support for Plate import"' Repository: ome/omero-figure Excluded PRs: - PR 669 will-moore 'Standalone python script' (stage: draft) - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier) Updating 9cc36cde..186921ea Previously merged: - PR 667 Tom-TBT 'Label suggestion interface' - PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID' - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO' - PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0' - PR 664 Nirkan 'Handle many channels ' - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes' - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540' - PR 661 Rdornier 'Align to grid - check if panels are already in the grid' - PR 649 jburel 'Replace manual changelog by automated GH release step' - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout' - PR 637 Rdornier 'Fix scalebar position' - PR 600 Rdornier 'Label on rois' - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles' - PR 651 Rdornier 'More compliant align to grid' - PR 650 jburel 'Bump Python version' - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…' - PR 610 will-moore 'Add docs/contributing.rst' - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1' - PR 646 JensWendt 'fix word wrap of image names' - PR 612 will-moore 'Script version' - PR 630 will-moore 'Fix color and position for ALL new panel insets' - PR 616 Rdornier 'Fix labels around border' - PR 605 Tom-TBT 'Colorbar feature' - PR 638 Rdornier 'Fix arrow opacity' - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4' - PR 635 dependabot[bot] 'Bump esbuild and vite' - PR 623 will-moore 'Fix wrapping of label X button. see issues/622' - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 ' - PR 662 will-moore 'Export script handles OME-zarr images' - PR 663 will-moore 'Zarr' - PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues' - PR 673 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.1' Conflicting PRs (not included): - PR 666 will-moore 'Standalone app' - PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8' Repository: ome/omero-fpbioimage Already up to date. Merged PRs: - PR 18 jburel 'default size z value' - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-gallery Already up to date. Merged PRs: - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - PR 114 dependabot[bot] 'Bump tar and fsevents' - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' Conflicting PRs (not included): - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' Repository: ome/omero-iviewer Excluded PRs: - PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft) - PR 508 will-moore 'Broadcast channel demo' (stage: draft) - PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft) - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft) - PR 420 will-moore 'Add release process to README' (exclude comment) - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment) - PR 227 will-moore 'Vectortile investigation' (status: failure) Updating 7a798ce..5e2de43 Previously merged: - PR 510 joshmoore 'Re-enable omero-test-infra' - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 460 will-moore 'Channel min spinner fix' - PR 465 will-moore 'Save as Figure' - PR 471 will-moore 'Z projection disabled tooltip' - PR 512 jburel 'Replace manual changelog by automated GH release step' - PR 513 jburel 'Bump Python version' Repository: ome/omero-mapr Excluded PRs: - PR 79 will-moore 'Right panel title' (exclude comment) Already up to date. Merged PRs: - PR 74 will-moore 'mapr extension of webclient' - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Conflicting PRs (not included): - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-metadata Updating 3cd120c..55060a2 Previously merged: - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 92 dominikl 'add resolve_rois to projectwrapper' Conflicting PRs (not included): - PR 55 kkoz 'Prevent users from creating columns with python keyword names' - PR 64 will-moore 'Support images_by_name for Screen and Plate' Repository: ome/omero-parade Excluded PRs: - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft) - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment) - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment) - PR 39 chris-allan 'Expand all for Screens' (exclude comment) Already up to date. Merged PRs: - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Repository: ome/omero-prometheus-tools Already up to date. Merged PRs: - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-rois Excluded PRs: - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) Updating bdfeb5e..fc9ff96 Previously merged: - PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml' - PR 35 will-moore 'Add roi to array functions' Conflicting PRs (not included): - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-signup Already up to date. Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Conflicting PRs (not included): - PR 14 manics 'Add pre-commit (black, flake8)' Repository: openmicroscopy/omero-test-infra Excluded PRs: - PR 75 marimeireles 'Microservices' (user: marimeireles) Updating cda3ec6..c8a0015 Previously merged: - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT' - PR 82 jburel 'Upgrade python' - PR 81 erickmartins 'add ulimits to omero-server container' Merged PRs: - PR 74 joshmoore 'Add 'ms' target for ./docker' Repository: ome/omero-upload Already up to date. Merged PRs: - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-virtual-microscope Updating deab817..160d894 Previously merged: - PR 20 jburel 'Build' Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-web-zarr Excluded PRs: - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft) Updating 8f3c313..4e1e685 Previously merged: - PR 23 lubianat 'Fix mix of .rst and .md on README' - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints' Merged PRs: - PR 21 will-moore 'Web zarr import' Conflicting PRs (not included): - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' Repository: openmicroscopy/omero-weberror Already up to date. Merged PRs: - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: openmicroscopy/omero-webtest Already up to date. Merged PRs: - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/rOMERO-gateway Already up to date. Repository: ome/scripts Updating 4b4c755..5b4d768 Previously merged: - PR 231 jburel 'Create Release ' - PR 229 Rdornier 'Adding support for custom user label' - PR 223 will-moore 'don't attempt ROI stats on big images' - PR 230 Rdornier 'Import from csv fix' - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows' - PR 227 jburel 'Replace tostring by tobytes' - PR 225 will-moore 'Fix param names and assertion texts in tests' Generated by OMERO-plugins-push#79 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/)' 2026-03-05 00:43:01,298 [ scc.git] DEBUG [detached HEAD 89011a7] merge master -Dorg -Ssuccess-only 2026-03-05 00:43:01,298 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-) 2026-03-05 00:43:01,299 [ scc.merge] INFO Repository: ome/omero-plugins 2026-03-05 00:43:01,299 [ scc.merge] INFO Already up to date. 2026-03-05 00:43:01,299 [ scc.merge] INFO 2026-03-05 00:43:01,299 [ scc.merge] INFO Merged PRs: 2026-03-05 00:43:01,299 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2026-03-05 00:43:01,299 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2026-03-05 00:43:01,299 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2026-03-05 00:43:01,299 [ scc.merge] INFO 2026-03-05 00:43:01,299 [ scc.merge] INFO Repository: ome/minimal-omero-client 2026-03-05 00:43:01,299 [ scc.merge] INFO Already up to date. 2026-03-05 00:43:01,299 [ scc.merge] INFO 2026-03-05 00:43:01,299 [ scc.merge] INFO 2026-03-05 00:43:01,299 [ scc.merge] INFO Repository: ome/omero-cli-duplicate 2026-03-05 00:43:01,299 [ scc.merge] INFO Excluded PRs: 2026-03-05 00:43:01,299 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment) 2026-03-05 00:43:01,299 [ scc.merge] INFO Already up to date. 2026-03-05 00:43:01,299 [ scc.merge] INFO 2026-03-05 00:43:01,301 [ scc.merge] INFO Merged PRs: 2026-03-05 00:43:01,301 [ scc.merge] INFO - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-03-05 00:43:01,301 [ scc.merge] INFO 2026-03-05 00:43:01,301 [ scc.merge] INFO Repository: ome/omero-cli-render 2026-03-05 00:43:01,301 [ scc.merge] INFO Excluded PRs: 2026-03-05 00:43:01,301 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft) 2026-03-05 00:43:01,301 [ scc.merge] INFO Updating ce6e13c..68b7303 2026-03-05 00:43:01,301 [ scc.merge] INFO Previously merged: 2026-03-05 00:43:01,302 [ scc.merge] INFO - PR 74 jburel 'Replace manual changelog by automated GH release step' 2026-03-05 00:43:01,302 [ scc.merge] INFO - PR 75 jburel 'Sort the new channels to ensure settings are set' 2026-03-05 00:43:01,302 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names' 2026-03-05 00:43:01,302 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands' 2026-03-05 00:43:01,302 [ scc.merge] INFO 2026-03-05 00:43:01,302 [ scc.merge] INFO Merged PRs: 2026-03-05 00:43:01,302 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate' 2026-03-05 00:43:01,302 [ scc.merge] INFO 2026-03-05 00:43:01,302 [ scc.merge] INFO Repository: ome/omero-cli-zarr 2026-03-05 00:43:01,302 [ scc.merge] INFO Excluded PRs: 2026-03-05 00:43:01,302 [ scc.merge] INFO - PR 181 will-moore 'Add labels support for import' (exclude comment) 2026-03-05 00:43:01,302 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft) 2026-03-05 00:43:01,302 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft) 2026-03-05 00:43:01,302 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft) 2026-03-05 00:43:01,302 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) 2026-03-05 00:43:01,302 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment) 2026-03-05 00:43:01,302 [ scc.merge] INFO Updating 11d3587..9f844b8 2026-03-05 00:43:01,302 [ scc.merge] INFO Previously merged: 2026-03-05 00:43:01,302 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' 2026-03-05 00:43:01,302 [ scc.merge] INFO - PR 192 jburel 'Set Omero pixel size' 2026-03-05 00:43:01,302 [ scc.merge] INFO - PR 186 jburel 'Create release from tag' 2026-03-05 00:43:01,302 [ scc.merge] INFO - PR 187 dominikl 'Fix target-by-name option' 2026-03-05 00:43:01,302 [ scc.merge] INFO - PR 180 will-moore 'Import command' 2026-03-05 00:43:01,302 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0' 2026-03-05 00:43:01,302 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer' 2026-03-05 00:43:01,302 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0' 2026-03-05 00:43:01,302 [ scc.merge] INFO - PR 147 will-moore 'Name option' 2026-03-05 00:43:01,302 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()' 2026-03-05 00:43:01,302 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests' 2026-03-05 00:43:01,302 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-03-05 00:43:01,302 [ scc.merge] INFO 2026-03-05 00:43:01,302 [ scc.merge] INFO Conflicting PRs (not included): 2026-03-05 00:43:01,302 [ scc.merge] INFO - PR 174 will-moore 'Skip wells' 2026-03-05 00:43:01,302 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' 2026-03-05 00:43:01,302 [ scc.merge] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"' 2026-03-05 00:43:01,302 [ scc.merge] INFO 2026-03-05 00:43:01,302 [ scc.merge] INFO Repository: ome/omero-figure 2026-03-05 00:43:01,302 [ scc.merge] INFO Excluded PRs: 2026-03-05 00:43:01,302 [ scc.merge] INFO - PR 669 will-moore 'Standalone python script' (stage: draft) 2026-03-05 00:43:01,303 [ scc.merge] INFO - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier) 2026-03-05 00:43:01,303 [ scc.merge] INFO Updating 9cc36cde..186921ea 2026-03-05 00:43:01,303 [ scc.merge] INFO Previously merged: 2026-03-05 00:43:01,303 [ scc.merge] INFO - PR 667 Tom-TBT 'Label suggestion interface' 2026-03-05 00:43:01,303 [ scc.merge] INFO - PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID' 2026-03-05 00:43:01,303 [ scc.merge] INFO - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO' 2026-03-05 00:43:01,303 [ scc.merge] INFO - PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0' 2026-03-05 00:43:01,303 [ scc.merge] INFO - PR 664 Nirkan 'Handle many channels ' 2026-03-05 00:43:01,303 [ scc.merge] INFO - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes' 2026-03-05 00:43:01,303 [ scc.merge] INFO - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540' 2026-03-05 00:43:01,303 [ scc.merge] INFO - PR 661 Rdornier 'Align to grid - check if panels are already in the grid' 2026-03-05 00:43:01,303 [ scc.merge] INFO - PR 649 jburel 'Replace manual changelog by automated GH release step' 2026-03-05 00:43:01,303 [ scc.merge] INFO - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout' 2026-03-05 00:43:01,303 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position' 2026-03-05 00:43:01,303 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois' 2026-03-05 00:43:01,303 [ scc.merge] INFO - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles' 2026-03-05 00:43:01,303 [ scc.merge] INFO - PR 651 Rdornier 'More compliant align to grid' 2026-03-05 00:43:01,303 [ scc.merge] INFO - PR 650 jburel 'Bump Python version' 2026-03-05 00:43:01,303 [ scc.merge] INFO - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…' 2026-03-05 00:43:01,303 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst' 2026-03-05 00:43:01,303 [ scc.merge] INFO - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1' 2026-03-05 00:43:01,303 [ scc.merge] INFO - PR 646 JensWendt 'fix word wrap of image names' 2026-03-05 00:43:01,303 [ scc.merge] INFO - PR 612 will-moore 'Script version' 2026-03-05 00:43:01,303 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets' 2026-03-05 00:43:01,303 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border' 2026-03-05 00:43:01,303 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature' 2026-03-05 00:43:01,303 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity' 2026-03-05 00:43:01,303 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4' 2026-03-05 00:43:01,303 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite' 2026-03-05 00:43:01,303 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622' 2026-03-05 00:43:01,303 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-03-05 00:43:01,303 [ scc.merge] INFO 2026-03-05 00:43:01,303 [ scc.merge] INFO Merged PRs: 2026-03-05 00:43:01,303 [ scc.merge] INFO - PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 ' 2026-03-05 00:43:01,303 [ scc.merge] INFO - PR 662 will-moore 'Export script handles OME-zarr images' 2026-03-05 00:43:01,303 [ scc.merge] INFO - PR 663 will-moore 'Zarr' 2026-03-05 00:43:01,303 [ scc.merge] INFO - PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues' 2026-03-05 00:43:01,303 [ scc.merge] INFO - PR 673 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.1' 2026-03-05 00:43:01,303 [ scc.merge] INFO 2026-03-05 00:43:01,303 [ scc.merge] INFO Conflicting PRs (not included): 2026-03-05 00:43:01,303 [ scc.merge] INFO - PR 666 will-moore 'Standalone app' 2026-03-05 00:43:01,303 [ scc.merge] INFO - PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8' 2026-03-05 00:43:01,303 [ scc.merge] INFO 2026-03-05 00:43:01,303 [ scc.merge] INFO Repository: ome/omero-fpbioimage 2026-03-05 00:43:01,303 [ scc.merge] INFO Already up to date. 2026-03-05 00:43:01,304 [ scc.merge] INFO 2026-03-05 00:43:01,304 [ scc.merge] INFO Merged PRs: 2026-03-05 00:43:01,304 [ scc.merge] INFO - PR 18 jburel 'default size z value' 2026-03-05 00:43:01,304 [ scc.merge] INFO - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-03-05 00:43:01,304 [ scc.merge] INFO 2026-03-05 00:43:01,304 [ scc.merge] INFO Repository: ome/omero-gallery 2026-03-05 00:43:01,304 [ scc.merge] INFO Already up to date. 2026-03-05 00:43:01,304 [ scc.merge] INFO 2026-03-05 00:43:01,304 [ scc.merge] INFO Merged PRs: 2026-03-05 00:43:01,304 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' 2026-03-05 00:43:01,304 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents' 2026-03-05 00:43:01,304 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' 2026-03-05 00:43:01,304 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' 2026-03-05 00:43:01,304 [ scc.merge] INFO 2026-03-05 00:43:01,304 [ scc.merge] INFO Conflicting PRs (not included): 2026-03-05 00:43:01,304 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' 2026-03-05 00:43:01,304 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' 2026-03-05 00:43:01,304 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' 2026-03-05 00:43:01,304 [ scc.merge] INFO 2026-03-05 00:43:01,304 [ scc.merge] INFO Repository: ome/omero-iviewer 2026-03-05 00:43:01,304 [ scc.merge] INFO Excluded PRs: 2026-03-05 00:43:01,304 [ scc.merge] INFO - PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft) 2026-03-05 00:43:01,304 [ scc.merge] INFO - PR 508 will-moore 'Broadcast channel demo' (stage: draft) 2026-03-05 00:43:01,304 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft) 2026-03-05 00:43:01,304 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft) 2026-03-05 00:43:01,304 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment) 2026-03-05 00:43:01,304 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment) 2026-03-05 00:43:01,304 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure) 2026-03-05 00:43:01,304 [ scc.merge] INFO Updating 7a798ce..5e2de43 2026-03-05 00:43:01,304 [ scc.merge] INFO Previously merged: 2026-03-05 00:43:01,304 [ scc.merge] INFO - PR 510 joshmoore 'Re-enable omero-test-infra' 2026-03-05 00:43:01,304 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-03-05 00:43:01,304 [ scc.merge] INFO 2026-03-05 00:43:01,304 [ scc.merge] INFO Merged PRs: 2026-03-05 00:43:01,304 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix' 2026-03-05 00:43:01,304 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure' 2026-03-05 00:43:01,304 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip' 2026-03-05 00:43:01,304 [ scc.merge] INFO - PR 512 jburel 'Replace manual changelog by automated GH release step' 2026-03-05 00:43:01,304 [ scc.merge] INFO - PR 513 jburel 'Bump Python version' 2026-03-05 00:43:01,304 [ scc.merge] INFO 2026-03-05 00:43:01,304 [ scc.merge] INFO Repository: ome/omero-mapr 2026-03-05 00:43:01,304 [ scc.merge] INFO Excluded PRs: 2026-03-05 00:43:01,304 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment) 2026-03-05 00:43:01,304 [ scc.merge] INFO Already up to date. 2026-03-05 00:43:01,304 [ scc.merge] INFO 2026-03-05 00:43:01,304 [ scc.merge] INFO Merged PRs: 2026-03-05 00:43:01,304 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient' 2026-03-05 00:43:01,304 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-03-05 00:43:01,304 [ scc.merge] INFO 2026-03-05 00:43:01,304 [ scc.merge] INFO Conflicting PRs (not included): 2026-03-05 00:43:01,305 [ scc.merge] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-03-05 00:43:01,305 [ scc.merge] INFO 2026-03-05 00:43:01,305 [ scc.merge] INFO Repository: ome/omero-metadata 2026-03-05 00:43:01,305 [ scc.merge] INFO Updating 3cd120c..55060a2 2026-03-05 00:43:01,305 [ scc.merge] INFO Previously merged: 2026-03-05 00:43:01,305 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-03-05 00:43:01,305 [ scc.merge] INFO 2026-03-05 00:43:01,305 [ scc.merge] INFO Merged PRs: 2026-03-05 00:43:01,305 [ scc.merge] INFO - PR 92 dominikl 'add resolve_rois to projectwrapper' 2026-03-05 00:43:01,305 [ scc.merge] INFO 2026-03-05 00:43:01,305 [ scc.merge] INFO Conflicting PRs (not included): 2026-03-05 00:43:01,305 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names' 2026-03-05 00:43:01,305 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate' 2026-03-05 00:43:01,305 [ scc.merge] INFO 2026-03-05 00:43:01,305 [ scc.merge] INFO Repository: ome/omero-parade 2026-03-05 00:43:01,305 [ scc.merge] INFO Excluded PRs: 2026-03-05 00:43:01,305 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft) 2026-03-05 00:43:01,305 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment) 2026-03-05 00:43:01,305 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment) 2026-03-05 00:43:01,305 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment) 2026-03-05 00:43:01,305 [ scc.merge] INFO Already up to date. 2026-03-05 00:43:01,305 [ scc.merge] INFO 2026-03-05 00:43:01,305 [ scc.merge] INFO Merged PRs: 2026-03-05 00:43:01,305 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' 2026-03-05 00:43:01,305 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' 2026-03-05 00:43:01,305 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-03-05 00:43:01,305 [ scc.merge] INFO 2026-03-05 00:43:01,305 [ scc.merge] INFO Repository: ome/omero-prometheus-tools 2026-03-05 00:43:01,305 [ scc.merge] INFO Already up to date. 2026-03-05 00:43:01,305 [ scc.merge] INFO 2026-03-05 00:43:01,305 [ scc.merge] INFO Merged PRs: 2026-03-05 00:43:01,305 [ scc.merge] INFO - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-03-05 00:43:01,305 [ scc.merge] INFO 2026-03-05 00:43:01,305 [ scc.merge] INFO Repository: ome/omero-rois 2026-03-05 00:43:01,305 [ scc.merge] INFO Excluded PRs: 2026-03-05 00:43:01,305 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) 2026-03-05 00:43:01,305 [ scc.merge] INFO Updating bdfeb5e..fc9ff96 2026-03-05 00:43:01,305 [ scc.merge] INFO Previously merged: 2026-03-05 00:43:01,305 [ scc.merge] INFO - PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml' 2026-03-05 00:43:01,305 [ scc.merge] INFO - PR 35 will-moore 'Add roi to array functions' 2026-03-05 00:43:01,305 [ scc.merge] INFO 2026-03-05 00:43:01,305 [ scc.merge] INFO Conflicting PRs (not included): 2026-03-05 00:43:01,305 [ scc.merge] INFO - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-03-05 00:43:01,305 [ scc.merge] INFO 2026-03-05 00:43:01,305 [ scc.merge] INFO Repository: ome/omero-signup 2026-03-05 00:43:01,305 [ scc.merge] INFO Already up to date. 2026-03-05 00:43:01,305 [ scc.merge] INFO 2026-03-05 00:43:01,305 [ scc.merge] INFO Merged PRs: 2026-03-05 00:43:01,305 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-03-05 00:43:01,305 [ scc.merge] INFO 2026-03-05 00:43:01,306 [ scc.merge] INFO Conflicting PRs (not included): 2026-03-05 00:43:01,306 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)' 2026-03-05 00:43:01,306 [ scc.merge] INFO 2026-03-05 00:43:01,306 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra 2026-03-05 00:43:01,306 [ scc.merge] INFO Excluded PRs: 2026-03-05 00:43:01,306 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles) 2026-03-05 00:43:01,306 [ scc.merge] INFO Updating cda3ec6..c8a0015 2026-03-05 00:43:01,306 [ scc.merge] INFO Previously merged: 2026-03-05 00:43:01,306 [ scc.merge] INFO - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT' 2026-03-05 00:43:01,306 [ scc.merge] INFO - PR 82 jburel 'Upgrade python' 2026-03-05 00:43:01,306 [ scc.merge] INFO - PR 81 erickmartins 'add ulimits to omero-server container' 2026-03-05 00:43:01,306 [ scc.merge] INFO 2026-03-05 00:43:01,306 [ scc.merge] INFO Merged PRs: 2026-03-05 00:43:01,306 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' 2026-03-05 00:43:01,306 [ scc.merge] INFO 2026-03-05 00:43:01,306 [ scc.merge] INFO Repository: ome/omero-upload 2026-03-05 00:43:01,306 [ scc.merge] INFO Already up to date. 2026-03-05 00:43:01,306 [ scc.merge] INFO 2026-03-05 00:43:01,306 [ scc.merge] INFO Merged PRs: 2026-03-05 00:43:01,306 [ scc.merge] INFO - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-03-05 00:43:01,306 [ scc.merge] INFO 2026-03-05 00:43:01,306 [ scc.merge] INFO Repository: ome/omero-virtual-microscope 2026-03-05 00:43:01,306 [ scc.merge] INFO Updating deab817..160d894 2026-03-05 00:43:01,306 [ scc.merge] INFO Previously merged: 2026-03-05 00:43:01,306 [ scc.merge] INFO - PR 20 jburel 'Build' 2026-03-05 00:43:01,306 [ scc.merge] INFO 2026-03-05 00:43:01,306 [ scc.merge] INFO Merged PRs: 2026-03-05 00:43:01,306 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-03-05 00:43:01,306 [ scc.merge] INFO 2026-03-05 00:43:01,306 [ scc.merge] INFO Repository: ome/omero-web-zarr 2026-03-05 00:43:01,306 [ scc.merge] INFO Excluded PRs: 2026-03-05 00:43:01,306 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft) 2026-03-05 00:43:01,306 [ scc.merge] INFO Updating 8f3c313..4e1e685 2026-03-05 00:43:01,306 [ scc.merge] INFO Previously merged: 2026-03-05 00:43:01,306 [ scc.merge] INFO - PR 23 lubianat 'Fix mix of .rst and .md on README' 2026-03-05 00:43:01,306 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints' 2026-03-05 00:43:01,306 [ scc.merge] INFO 2026-03-05 00:43:01,306 [ scc.merge] INFO Merged PRs: 2026-03-05 00:43:01,306 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import' 2026-03-05 00:43:01,306 [ scc.merge] INFO 2026-03-05 00:43:01,306 [ scc.merge] INFO Conflicting PRs (not included): 2026-03-05 00:43:01,306 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' 2026-03-05 00:43:01,306 [ scc.merge] INFO 2026-03-05 00:43:01,306 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror 2026-03-05 00:43:01,306 [ scc.merge] INFO Already up to date. 2026-03-05 00:43:01,306 [ scc.merge] INFO 2026-03-05 00:43:01,306 [ scc.merge] INFO Merged PRs: 2026-03-05 00:43:01,306 [ scc.merge] INFO - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-03-05 00:43:01,306 [ scc.merge] INFO 2026-03-05 00:43:01,306 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest 2026-03-05 00:43:01,306 [ scc.merge] INFO Already up to date. 2026-03-05 00:43:01,306 [ scc.merge] INFO 2026-03-05 00:43:01,307 [ scc.merge] INFO Merged PRs: 2026-03-05 00:43:01,307 [ scc.merge] INFO - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-03-05 00:43:01,307 [ scc.merge] INFO 2026-03-05 00:43:01,307 [ scc.merge] INFO Repository: ome/rOMERO-gateway 2026-03-05 00:43:01,307 [ scc.merge] INFO Already up to date. 2026-03-05 00:43:01,307 [ scc.merge] INFO 2026-03-05 00:43:01,307 [ scc.merge] INFO 2026-03-05 00:43:01,307 [ scc.merge] INFO Repository: ome/scripts 2026-03-05 00:43:01,307 [ scc.merge] INFO Updating 4b4c755..5b4d768 2026-03-05 00:43:01,307 [ scc.merge] INFO Previously merged: 2026-03-05 00:43:01,307 [ scc.merge] INFO - PR 231 jburel 'Create Release ' 2026-03-05 00:43:01,307 [ scc.merge] INFO - PR 229 Rdornier 'Adding support for custom user label' 2026-03-05 00:43:01,307 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images' 2026-03-05 00:43:01,307 [ scc.merge] INFO - PR 230 Rdornier 'Import from csv fix' 2026-03-05 00:43:01,307 [ scc.merge] INFO - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows' 2026-03-05 00:43:01,307 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes' 2026-03-05 00:43:01,307 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests' 2026-03-05 00:43:01,307 [ scc.merge] INFO 2026-03-05 00:43:01,307 [ scc.merge] INFO 2026-03-05 00:43:01,307 [ scc.merge] DEBUG Cleaning remote branches created for merging 2026-03-05 00:43:01,307 [ scc.git] DEBUG Calling 'git remote' 2026-03-05 00:43:01,310 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client 2026-03-05 00:43:01,310 [ scc.git] DEBUG Calling 'git remote' 2026-03-05 00:43:01,313 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:43:01,313 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate 2026-03-05 00:43:01,313 [ scc.git] DEBUG Calling 'git remote' 2026-03-05 00:43:01,315 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:43:01,315 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render 2026-03-05 00:43:01,315 [ scc.git] DEBUG Calling 'git remote' 2026-03-05 00:43:01,317 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:43:01,317 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr 2026-03-05 00:43:01,317 [ scc.git] DEBUG Calling 'git remote' 2026-03-05 00:43:01,319 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:43:01,319 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure 2026-03-05 00:43:01,319 [ scc.git] DEBUG Calling 'git remote' 2026-03-05 00:43:01,321 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:43:01,321 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage 2026-03-05 00:43:01,321 [ scc.git] DEBUG Calling 'git remote' 2026-03-05 00:43:01,324 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:43:01,324 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery 2026-03-05 00:43:01,324 [ scc.git] DEBUG Calling 'git remote' 2026-03-05 00:43:01,326 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:43:01,326 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer 2026-03-05 00:43:01,326 [ scc.git] DEBUG Calling 'git remote' 2026-03-05 00:43:01,328 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:43:01,328 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr 2026-03-05 00:43:01,328 [ scc.git] DEBUG Calling 'git remote' 2026-03-05 00:43:01,330 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:43:01,330 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata 2026-03-05 00:43:01,330 [ scc.git] DEBUG Calling 'git remote' 2026-03-05 00:43:01,332 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:43:01,333 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade 2026-03-05 00:43:01,333 [ scc.git] DEBUG Calling 'git remote' 2026-03-05 00:43:01,335 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:43:01,335 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools 2026-03-05 00:43:01,335 [ scc.git] DEBUG Calling 'git remote' 2026-03-05 00:43:01,337 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:43:01,337 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois 2026-03-05 00:43:01,337 [ scc.git] DEBUG Calling 'git remote' 2026-03-05 00:43:01,339 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:43:01,339 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup 2026-03-05 00:43:01,339 [ scc.git] DEBUG Calling 'git remote' 2026-03-05 00:43:01,341 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:43:01,341 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra 2026-03-05 00:43:01,341 [ scc.git] DEBUG Calling 'git remote' 2026-03-05 00:43:01,344 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:43:01,344 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload 2026-03-05 00:43:01,344 [ scc.git] DEBUG Calling 'git remote' 2026-03-05 00:43:01,346 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:43:01,346 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope 2026-03-05 00:43:01,346 [ scc.git] DEBUG Calling 'git remote' 2026-03-05 00:43:01,348 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:43:01,348 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr 2026-03-05 00:43:01,348 [ scc.git] DEBUG Calling 'git remote' 2026-03-05 00:43:01,350 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:43:01,350 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror 2026-03-05 00:43:01,350 [ scc.git] DEBUG Calling 'git remote' 2026-03-05 00:43:01,353 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:43:01,353 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest 2026-03-05 00:43:01,353 [ scc.git] DEBUG Calling 'git remote' 2026-03-05 00:43:01,355 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:43:01,355 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway 2026-03-05 00:43:01,355 [ scc.git] DEBUG Calling 'git remote' 2026-03-05 00:43:01,357 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-03-05 00:43:01,357 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts 2026-03-05 00:43:01,357 [ scc.git] DEBUG Calling 'git remote' 2026-03-05 00:43:01,359 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push Update component versions python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer. warnings.warn( WARNING: The wheel package is not available. WARNING: The wheel package is not available. /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer. warnings.warn( WARNING: The wheel package is not available. WARNING: The wheel package is not available. /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0' warnings.warn(tmpl.format(**locals())) /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0' warnings.warn(tmpl.format(**locals())) /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory Updating omero-gateway from 5.10.0 to 5.10.6-SNAPSHOT grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Commit all component version changes Entering 'minimal-omero-client' Entering 'omero-cli-duplicate' Entering 'omero-cli-render' Entering 'omero-cli-zarr' Entering 'omero-figure' Entering 'omero-fpbioimage' Entering 'omero-gallery' Entering 'omero-iviewer' Entering 'omero-mapr' Entering 'omero-metadata' Entering 'omero-parade' Entering 'omero-prometheus-tools' Entering 'omero-rois' Entering 'omero-signup' Entering 'omero-test-infra' Entering 'omero-upload' Entering 'omero-virtual-microscope' Entering 'omero-web-zarr' Entering 'omero-weberror' Entering 'omero-webtest' Entering 'rOMERO-gateway' Entering 'scripts' Entering 'minimal-omero-client' [detached HEAD 2487b94] Update component versions 1 file changed, 1 insertion(+), 1 deletion(-) Entering 'omero-cli-duplicate' HEAD detached from 4777ef8 nothing to commit, working tree clean Entering 'omero-cli-render' HEAD detached from ce6e13c nothing to commit, working tree clean Entering 'omero-cli-zarr' HEAD detached from 11d3587 Untracked files: (use "git add <file>..." to include in what will be committed) .eggs/ nothing added to commit but untracked files present (use "git add" to track) Entering 'omero-figure' HEAD detached from 9cc36cde nothing to commit, working tree clean Entering 'omero-fpbioimage' HEAD detached from 3b6c05a nothing to commit, working tree clean Entering 'omero-gallery' HEAD detached from 2a621da nothing to commit, working tree clean Entering 'omero-iviewer' HEAD detached from 7a798ce nothing to commit, working tree clean Entering 'omero-mapr' HEAD detached from 0a557da nothing to commit, working tree clean Entering 'omero-metadata' HEAD detached from 3cd120c nothing to commit, working tree clean Entering 'omero-parade' HEAD detached from fb5ae86 nothing to commit, working tree clean Entering 'omero-prometheus-tools' HEAD detached from eb47378 nothing to commit, working tree clean Entering 'omero-rois' HEAD detached from bdfeb5e nothing to commit, working tree clean Entering 'omero-signup' HEAD detached from be76813 nothing to commit, working tree clean Entering 'omero-test-infra' HEAD detached from cda3ec6 nothing to commit, working tree clean Entering 'omero-upload' HEAD detached from 100f6ae nothing to commit, working tree clean Entering 'omero-virtual-microscope' HEAD detached from deab817 nothing to commit, working tree clean Entering 'omero-web-zarr' HEAD detached from 8f3c313 nothing to commit, working tree clean Entering 'omero-weberror' HEAD detached from 70b01ed nothing to commit, working tree clean Entering 'omero-webtest' HEAD detached from 5bfef29 nothing to commit, working tree clean Entering 'rOMERO-gateway' HEAD detached from 7b5d64d nothing to commit, working tree clean Entering 'scripts' HEAD detached from 4b4c755 nothing to commit, working tree clean [detached HEAD 3423496] Update component versions 1 file changed, 1 insertion(+), 1 deletion(-) Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 2026-03-05 00:43:47,372 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 2026-03-05 00:43:56,703 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 2026-03-05 00:43:59,174 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2026-03-05 00:44:03,815 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2026-03-05 00:44:44,958 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci [Pipeline] archiveArtifacts Archiving artifacts [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS