Console Output
Skipping 218 KB..
Full LogTP/1.1" 200 None
2026-09-28 12:26:25,787 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2
2026-09-28 12:26:25,788 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2026-09-28 12:26:26,279 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None
2026-09-28 12:26:26,789 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None
2026-09-28 12:26:27,439 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102?page=1 HTTP/1.1" 200 None
2026-09-28 12:26:28,019 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-09-28 12:26:28,523 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102?page=1 HTTP/1.1" 200 None
2026-09-28 12:26:28,993 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2026-09-28 12:26:28,994 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2026-09-28 12:26:28,994 [ scc.repo] DEBUG ## Branches found:
2026-09-28 12:26:28,994 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2026-09-28 12:26:28,995 [ scc.git] DEBUG Get sha1 of %s
2026-09-28 12:26:28,995 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:26:29,014 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-09-28 12:26:29,032 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-09-28 12:26:29,032 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-09-28 12:26:29,162 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-09-28 12:26:29,475 [ scc.git] DEBUG Updating 3cd120c..6a653e4
2026-09-28 12:26:30,192 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/95 HTTP/1.1" 200 None
2026-09-28 12:26:31,042 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/94 HTTP/1.1" 200 None
2026-09-28 12:26:31,860 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2026-09-28 12:26:31,861 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2026-09-28 12:26:32,740 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-09-28 12:26:32,740 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2026-09-28 12:26:32,767 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2026-09-28 12:26:33,549 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-09-28 12:26:33,549 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2026-09-28 12:26:33,575 [ scc.git] DEBUG Calling 'git fetch origin pull/92/head'
2026-09-28 12:26:34,134 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-09-28 12:26:34,134 [ scc.git] DEBUG * branch refs/pull/92/head -> FETCH_HEAD
2026-09-28 12:26:34,158 [ scc.git] DEBUG ## Unique users: []
2026-09-28 12:26:34,158 [ scc.git] DEBUG Get sha1 of %s
2026-09-28 12:26:34,158 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:26:34,176 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-09-28 12:26:34,235 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:26:34,250 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-09-28 12:26:34,494 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2026-09-28 12:26:34,494 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2026-09-28 12:26:34,494 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2026-09-28 12:26:34,494 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2026-09-28 12:26:34,524 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-09-28 12:26:34,526 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-09-28 12:26:34,550 [ scc.git] DEBUG Calling 'git reset --hard 6a653e49e3589ccb463166506896639f6f0a5a2b'
2026-09-28 12:26:34,686 [ scc.git] DEBUG HEAD is now at 6a653e4 Fix workflow permission indentation
2026-09-28 12:26:34,880 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-28 12:26:34,881 [ scc.git] DEBUG Calling 'git merge-base 6a653e49e3589ccb463166506896639f6f0a5a2b 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-09-28 12:26:34,936 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..6a653e49e3589ccb463166506896639f6f0a5a2b'
2026-09-28 12:26:34,967 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#91](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/91/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/91/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/cli.py
- src/omero_metadata/populate.py
--conflicts
2026-09-28 12:26:34,981 [ scc.config] DEBUG Found github.token
2026-09-28 12:26:34,981 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2026-09-28 12:26:34,981 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2026-09-28 12:26:35,079 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:26:35,098 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2026-09-28 12:26:35,420 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2026-09-28 12:26:35,420 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2026-09-28 12:26:35,420 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2026-09-28 12:26:35,445 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-09-28 12:26:35,446 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-09-28 12:26:35,481 [ scc.git] DEBUG Calling 'git reset --hard 6a653e49e3589ccb463166506896639f6f0a5a2b'
2026-09-28 12:26:35,631 [ scc.git] DEBUG HEAD is now at 6a653e4 Fix workflow permission indentation
2026-09-28 12:26:35,821 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-28 12:26:35,822 [ scc.git] DEBUG Calling 'git merge-base 6a653e49e3589ccb463166506896639f6f0a5a2b 78e55539b68e351ed5ef202854718b49a37729a7'
2026-09-28 12:26:35,867 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..6a653e49e3589ccb463166506896639f6f0a5a2b'
2026-09-28 12:26:35,891 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#91](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/91/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/91/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2026-09-28 12:26:35,903 [ scc.config] DEBUG Found github.token
2026-09-28 12:26:35,904 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2026-09-28 12:26:35,904 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...64d33da6022f537d572d4f69a5cec86377b6e78f'
2026-09-28 12:26:35,943 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:26:35,957 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 92 (add resolve_rois to projectwrapper) 64d33da6022f537d572d4f69a5cec86377b6e78f'
2026-09-28 12:26:36,196 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-09-28 12:26:36,276 [ scc.git] DEBUG src/omero_metadata/populate.py | 55 +++++++++++++++++++++++++++++++++++++++++-
2026-09-28 12:26:36,276 [ scc.git] DEBUG 1 file changed, 54 insertions(+), 1 deletion(-)
2026-09-28 12:26:36,451 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-28 12:26:36,452 [ scc.git] DEBUG Calling 'git submodule update'
2026-09-28 12:26:36,598 [ scc.git] DEBUG Get sha1 of %s
2026-09-28 12:26:36,598 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:26:36,614 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-09-28 12:26:36,720 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-09-28 12:26:36,787 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff029a13f10> has no local changes
2026-09-28 12:26:36,787 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..6a653e4
Previously merged:
- PR 95 sbesson 'Remove manual CHANGELOG in favor of automated GitHub releases'
- PR 94 sbesson 'Cap pandas to 2.x and clean up unused dependencies'
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 92 dominikl 'add resolve_rois to projectwrapper'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#91 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/91/)'
2026-09-28 12:26:36,934 [ scc.git] DEBUG [detached HEAD 844f01a] merge master -Dorg -Ssuccess-only
2026-09-28 12:26:36,936 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-28 12:26:36,936 [ scc.repo] DEBUG ## PRs found:
2026-09-28 12:26:37,292 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2026-09-28 12:26:37,825 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2026-09-28 12:26:38,400 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0?page=1 HTTP/1.1" 200 None
2026-09-28 12:26:38,967 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-09-28 12:26:39,439 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0?page=1 HTTP/1.1" 200 None
2026-09-28 12:26:40,098 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2026-09-28 12:26:40,099 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-09-28 12:26:40,982 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2026-09-28 12:26:40,983 [ scc.repo] DEBUG # ... Include label: dependencies
2026-09-28 12:26:41,677 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80?page=1 HTTP/1.1" 200 None
2026-09-28 12:26:42,207 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-09-28 12:26:42,710 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80?page=1 HTTP/1.1" 200 None
2026-09-28 12:26:43,169 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2026-09-28 12:26:43,170 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2026-09-28 12:26:43,693 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2026-09-28 12:26:43,694 [ scc.repo] DEBUG # ... Include label: dependencies
2026-09-28 12:26:44,387 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0?page=1 HTTP/1.1" 200 None
2026-09-28 12:26:44,994 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-09-28 12:26:45,525 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0?page=1 HTTP/1.1" 200 None
2026-09-28 12:26:45,997 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2026-09-28 12:26:45,998 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2026-09-28 12:26:46,504 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2026-09-28 12:26:47,197 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2026-09-28 12:26:47,700 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2026-09-28 12:26:48,237 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2026-09-28 12:26:48,765 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2026-09-28 12:26:49,275 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2026-09-28 12:26:49,820 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2026-09-28 12:26:49,822 [ scc.repo] DEBUG ## Branches found:
2026-09-28 12:26:49,823 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2026-09-28 12:26:49,823 [ scc.git] DEBUG Get sha1 of %s
2026-09-28 12:26:49,823 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:26:49,842 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-09-28 12:26:49,860 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-09-28 12:26:49,860 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-09-28 12:26:49,878 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-09-28 12:26:49,929 [ scc.git] DEBUG Already up to date.
2026-09-28 12:26:49,929 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2026-09-28 12:26:50,469 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-09-28 12:26:50,469 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2026-09-28 12:26:50,498 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2026-09-28 12:26:51,021 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-09-28 12:26:51,021 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2026-09-28 12:26:51,047 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2026-09-28 12:26:51,561 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-09-28 12:26:51,561 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2026-09-28 12:26:51,587 [ scc.git] DEBUG ## Unique users: []
2026-09-28 12:26:51,587 [ scc.git] DEBUG Get sha1 of %s
2026-09-28 12:26:51,587 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:26:51,603 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2026-09-28 12:26:51,625 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:26:51,641 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2026-09-28 12:26:51,880 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-09-28 12:26:51,944 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2026-09-28 12:26:51,944 [ scc.git] DEBUG package.json | 2 +-
2026-09-28 12:26:51,944 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2026-09-28 12:26:52,132 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-28 12:26:52,134 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2026-09-28 12:26:52,158 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:26:52,170 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2026-09-28 12:26:52,333 [ scc.git] DEBUG Auto-merging package-lock.json
2026-09-28 12:26:52,333 [ scc.git] DEBUG Auto-merging package.json
2026-09-28 12:26:52,394 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-09-28 12:26:52,457 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2026-09-28 12:26:52,457 [ scc.git] DEBUG package.json | 2 +-
2026-09-28 12:26:52,458 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2026-09-28 12:26:52,652 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-28 12:26:52,653 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2026-09-28 12:26:52,689 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:26:52,705 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2026-09-28 12:26:52,925 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-09-28 12:26:52,997 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-09-28 12:26:52,997 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-09-28 12:26:53,183 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-28 12:26:53,183 [ scc.git] DEBUG Calling 'git submodule update'
2026-09-28 12:26:53,325 [ scc.git] DEBUG Get sha1 of %s
2026-09-28 12:26:53,325 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:26:53,341 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-09-28 12:26:53,477 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-09-28 12:26:53,547 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff0299eb150> has no local changes
2026-09-28 12:26:53,547 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#91 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/91/)'
2026-09-28 12:26:53,694 [ scc.git] DEBUG [detached HEAD 1a097fb] merge master -Dorg -Ssuccess-only
2026-09-28 12:26:53,696 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-28 12:26:53,697 [ scc.repo] DEBUG ## PRs found:
2026-09-28 12:26:54,102 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None
2026-09-28 12:26:54,619 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/16 HTTP/1.1" 200 None
2026-09-28 12:26:54,619 [ scc.repo] DEBUG # ... Include label: dependencies
2026-09-28 12:26:55,236 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e?page=1 HTTP/1.1" 200 None
2026-09-28 12:26:55,856 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-09-28 12:26:56,473 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-09-28 12:26:56,962 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e?page=1 HTTP/1.1" 200 None
2026-09-28 12:26:57,448 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/5381b9f25e1666d81d236039a1317276291e9b2e?per_page=1 HTTP/1.1" 200 2
2026-09-28 12:26:57,449 [ scc.repo] DEBUG - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-09-28 12:26:57,449 [ scc.repo] DEBUG ## Branches found:
2026-09-28 12:26:57,449 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2026-09-28 12:26:57,450 [ scc.git] DEBUG Get sha1 of %s
2026-09-28 12:26:57,450 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:26:57,471 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-09-28 12:26:57,494 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-09-28 12:26:57,494 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-09-28 12:26:57,515 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-09-28 12:26:57,580 [ scc.git] DEBUG Already up to date.
2026-09-28 12:26:57,580 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head'
2026-09-28 12:26:58,076 [ scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools
2026-09-28 12:26:58,076 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD
2026-09-28 12:26:58,103 [ scc.git] DEBUG ## Unique users: []
2026-09-28 12:26:58,103 [ scc.git] DEBUG Get sha1 of %s
2026-09-28 12:26:58,103 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:26:58,119 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5381b9f25e1666d81d236039a1317276291e9b2e'
2026-09-28 12:26:58,145 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:26:58,162 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 5381b9f25e1666d81d236039a1317276291e9b2e'
2026-09-28 12:26:58,358 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-09-28 12:26:58,429 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-09-28 12:26:58,429 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-09-28 12:26:58,624 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-28 12:26:58,625 [ scc.git] DEBUG Calling 'git submodule update'
2026-09-28 12:26:58,759 [ scc.git] DEBUG Get sha1 of %s
2026-09-28 12:26:58,759 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:26:58,772 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-09-28 12:26:58,905 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-09-28 12:26:58,958 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff029a3c350> has no local changes
2026-09-28 12:26:58,958 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#91 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/91/)'
2026-09-28 12:26:59,085 [ scc.git] DEBUG [detached HEAD 63dbc0a] merge master -Dorg -Ssuccess-only
2026-09-28 12:26:59,087 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-28 12:26:59,087 [ scc.repo] DEBUG ## PRs found:
2026-09-28 12:26:59,364 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2026-09-28 12:26:59,886 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2026-09-28 12:26:59,887 [ scc.repo] DEBUG ## Branches found:
2026-09-28 12:26:59,887 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2026-09-28 12:26:59,888 [ scc.git] DEBUG Get sha1 of %s
2026-09-28 12:26:59,888 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:26:59,910 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-09-28 12:26:59,931 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-09-28 12:26:59,932 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-09-28 12:26:59,991 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-09-28 12:27:00,214 [ scc.git] DEBUG Updating bdfeb5e..fc9ff96
2026-09-28 12:27:02,811 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls/36 HTTP/1.1" 200 None
2026-09-28 12:27:03,763 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls/35 HTTP/1.1" 200 None
2026-09-28 12:27:03,867 [ scc.git] DEBUG ## Unique users: []
2026-09-28 12:27:03,867 [ scc.git] DEBUG Get sha1 of %s
2026-09-28 12:27:03,867 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:27:03,885 [ scc.git] DEBUG Calling 'git submodule update'
2026-09-28 12:27:04,021 [ scc.git] DEBUG Get sha1 of %s
2026-09-28 12:27:04,021 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:27:04,037 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-09-28 12:27:04,177 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-09-28 12:27:04,262 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff029a3cb10> has no local changes
2026-09-28 12:27:04,262 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Updating bdfeb5e..fc9ff96
Previously merged:
- PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml'
- PR 35 will-moore 'Add roi to array functions'
Generated by OMERO-plugins-push#91 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/91/)'
2026-09-28 12:27:04,408 [ scc.git] DEBUG [detached HEAD f54cfb3] merge master -Dorg -Ssuccess-only
2026-09-28 12:27:04,411 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-28 12:27:04,411 [ scc.repo] DEBUG ## PRs found:
2026-09-28 12:27:04,815 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2026-09-28 12:27:05,331 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/22 HTTP/1.1" 200 None
2026-09-28 12:27:05,332 [ scc.repo] DEBUG # ... Include label: dependencies
2026-09-28 12:27:05,931 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa?page=1 HTTP/1.1" 200 None
2026-09-28 12:27:06,652 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-09-28 12:27:07,259 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-09-28 12:27:07,785 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa?page=1 HTTP/1.1" 200 None
2026-09-28 12:27:08,247 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/8b27e47a330555e99e9594f0c4b546946f4f98aa?per_page=1 HTTP/1.1" 200 2
2026-09-28 12:27:08,248 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-09-28 12:27:08,834 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2026-09-28 12:27:09,428 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2026-09-28 12:27:10,073 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?page=1 HTTP/1.1" 200 None
2026-09-28 12:27:10,628 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-09-28 12:27:11,168 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?page=1 HTTP/1.1" 200 None
2026-09-28 12:27:11,629 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2026-09-28 12:27:11,629 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2026-09-28 12:27:11,630 [ scc.repo] DEBUG ## Branches found:
2026-09-28 12:27:11,630 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2026-09-28 12:27:11,631 [ scc.git] DEBUG Get sha1 of %s
2026-09-28 12:27:11,631 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:27:11,660 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-09-28 12:27:11,681 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-09-28 12:27:11,682 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-09-28 12:27:11,704 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-09-28 12:27:11,770 [ scc.git] DEBUG Already up to date.
2026-09-28 12:27:11,770 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2026-09-28 12:27:12,480 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2026-09-28 12:27:12,480 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2026-09-28 12:27:12,511 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2026-09-28 12:27:13,015 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2026-09-28 12:27:13,015 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2026-09-28 12:27:13,051 [ scc.git] DEBUG ## Unique users: []
2026-09-28 12:27:13,051 [ scc.git] DEBUG Get sha1 of %s
2026-09-28 12:27:13,051 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:27:13,067 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-09-28 12:27:13,103 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:27:13,129 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-09-28 12:27:13,460 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2026-09-28 12:27:13,460 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2026-09-28 12:27:13,460 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2026-09-28 12:27:13,460 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2026-09-28 12:27:13,460 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2026-09-28 12:27:13,460 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2026-09-28 12:27:13,460 [ scc.git] DEBUG Auto-merging setup.py
2026-09-28 12:27:13,460 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2026-09-28 12:27:13,490 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-09-28 12:27:13,492 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-09-28 12:27:13,537 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2026-09-28 12:27:13,730 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2026-09-28 12:27:13,952 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-28 12:27:13,953 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-09-28 12:27:13,988 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2026-09-28 12:27:14,013 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#91](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/91/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/91/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_signup/signup_settings.py
- omero_signup/views.py
- omero_signup/urls.py
- setup.py
--conflicts
2026-09-28 12:27:14,027 [ scc.config] DEBUG Found github.token
2026-09-28 12:27:14,028 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2026-09-28 12:27:14,028 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8b27e47a330555e99e9594f0c4b546946f4f98aa'
2026-09-28 12:27:14,050 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:27:14,065 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8b27e47a330555e99e9594f0c4b546946f4f98aa'
2026-09-28 12:27:14,275 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-09-28 12:27:14,357 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-09-28 12:27:14,357 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-09-28 12:27:14,639 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-28 12:27:14,640 [ scc.git] DEBUG Calling 'git submodule update'
2026-09-28 12:27:14,784 [ scc.git] DEBUG Get sha1 of %s
2026-09-28 12:27:14,784 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:27:14,804 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-09-28 12:27:14,936 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-09-28 12:27:15,002 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff0299d99d0> has no local changes
2026-09-28 12:27:15,002 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#91 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/91/)'
2026-09-28 12:27:15,164 [ scc.git] DEBUG [detached HEAD e42c8ac] merge master -Dorg -Ssuccess-only
2026-09-28 12:27:15,167 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-28 12:27:15,167 [ scc.repo] DEBUG ## PRs found:
2026-09-28 12:27:15,517 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2026-09-28 12:27:16,041 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2026-09-28 12:27:16,579 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2026-09-28 12:27:17,122 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74/comments HTTP/1.1" 200 None
2026-09-28 12:27:17,788 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623?page=1 HTTP/1.1" 200 None
2026-09-28 12:27:18,422 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-09-28 12:27:18,927 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623?page=1 HTTP/1.1" 200 None
2026-09-28 12:27:19,406 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/c18c080227e97899382d3464baa7c7885a621623?per_page=1 HTTP/1.1" 200 2
2026-09-28 12:27:19,406 [ scc.repo] DEBUG - PR 74 joshmoore 'Add 'ms' target for ./docker'
2026-09-28 12:27:19,406 [ scc.repo] DEBUG ## Branches found:
2026-09-28 12:27:19,406 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2026-09-28 12:27:19,407 [ scc.git] DEBUG Get sha1 of %s
2026-09-28 12:27:19,407 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:27:19,429 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-09-28 12:27:19,450 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-09-28 12:27:19,451 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-09-28 12:27:19,503 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-09-28 12:27:19,682 [ scc.git] DEBUG Updating cda3ec6..c8a0015
2026-09-28 12:27:20,709 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/84 HTTP/1.1" 200 None
2026-09-28 12:27:21,625 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/82 HTTP/1.1" 200 None
2026-09-28 12:27:22,451 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/81 HTTP/1.1" 200 None
2026-09-28 12:27:22,452 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head'
2026-09-28 12:27:23,038 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2026-09-28 12:27:23,038 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD
2026-09-28 12:27:23,064 [ scc.git] DEBUG ## Unique users: []
2026-09-28 12:27:23,065 [ scc.git] DEBUG Get sha1 of %s
2026-09-28 12:27:23,065 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:27:23,081 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c18c080227e97899382d3464baa7c7885a621623'
2026-09-28 12:27:23,115 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:27:23,132 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (Add 'ms' target for ./docker) c18c080227e97899382d3464baa7c7885a621623'
2026-09-28 12:27:23,344 [ scc.git] DEBUG Auto-merging .github/workflows/main.yml
2026-09-28 12:27:23,424 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-09-28 12:27:23,510 [ scc.git] DEBUG .github/workflows/main.yml | 8 ++++++++
2026-09-28 12:27:23,510 [ scc.git] DEBUG docker | 22 ++++++++++++++++++++++
2026-09-28 12:27:23,510 [ scc.git] DEBUG ms/compose.yml | 11 +++++++++++
2026-09-28 12:27:23,510 [ scc.git] DEBUG ms/example/Dockerfile | 13 +++++++++++++
2026-09-28 12:27:23,510 [ scc.git] DEBUG ms/test | 2 ++
2026-09-28 12:27:23,510 [ scc.git] DEBUG 5 files changed, 56 insertions(+)
2026-09-28 12:27:23,510 [ scc.git] DEBUG create mode 100644 ms/compose.yml
2026-09-28 12:27:23,510 [ scc.git] DEBUG create mode 100644 ms/example/Dockerfile
2026-09-28 12:27:23,510 [ scc.git] DEBUG create mode 100755 ms/test
2026-09-28 12:27:23,754 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-28 12:27:23,754 [ scc.git] DEBUG Calling 'git submodule update'
2026-09-28 12:27:23,895 [ scc.git] DEBUG Get sha1 of %s
2026-09-28 12:27:23,895 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:27:23,911 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-09-28 12:27:24,043 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-09-28 12:27:24,122 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff02ac01810> has no local changes
2026-09-28 12:27:24,122 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Merged PRs:
- PR 74 joshmoore 'Add 'ms' target for ./docker'
Generated by OMERO-plugins-push#91 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/91/)'
2026-09-28 12:27:24,273 [ scc.git] DEBUG [detached HEAD 3c6d633] merge master -Dorg -Ssuccess-only
2026-09-28 12:27:24,275 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-28 12:27:24,275 [ scc.repo] DEBUG ## PRs found:
2026-09-28 12:27:25,136 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 None
2026-09-28 12:27:25,662 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/issues/14 HTTP/1.1" 200 None
2026-09-28 12:27:25,663 [ scc.repo] DEBUG # ... Include label: dependencies
2026-09-28 12:27:26,332 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?page=1 HTTP/1.1" 200 None
2026-09-28 12:27:26,916 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-09-28 12:27:27,571 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-09-28 12:27:28,138 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?page=1 HTTP/1.1" 200 None
2026-09-28 12:27:28,790 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/statuses/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?per_page=1 HTTP/1.1" 200 2
2026-09-28 12:27:28,790 [ scc.repo] DEBUG - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-09-28 12:27:28,790 [ scc.repo] DEBUG ## Branches found:
2026-09-28 12:27:28,790 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2026-09-28 12:27:28,792 [ scc.git] DEBUG Get sha1 of %s
2026-09-28 12:27:28,792 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:27:28,811 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-09-28 12:27:28,829 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-09-28 12:27:28,829 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-09-28 12:27:28,847 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-09-28 12:27:28,913 [ scc.git] DEBUG Already up to date.
2026-09-28 12:27:28,913 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2026-09-28 12:27:29,407 [ scc.git] DEBUG From https://github.com/ome/omero-upload
2026-09-28 12:27:29,407 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2026-09-28 12:27:29,432 [ scc.git] DEBUG ## Unique users: []
2026-09-28 12:27:29,432 [ scc.git] DEBUG Get sha1 of %s
2026-09-28 12:27:29,432 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:27:29,446 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2026-09-28 12:27:29,465 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:27:29,479 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2026-09-28 12:27:29,687 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-09-28 12:27:29,770 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-09-28 12:27:29,770 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-09-28 12:27:30,298 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-28 12:27:30,299 [ scc.git] DEBUG Calling 'git submodule update'
2026-09-28 12:27:30,446 [ scc.git] DEBUG Get sha1 of %s
2026-09-28 12:27:30,446 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:27:30,463 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-09-28 12:27:30,575 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-09-28 12:27:30,634 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff0299d8350> has no local changes
2026-09-28 12:27:30,634 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#91 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/91/)'
2026-09-28 12:27:30,810 [ scc.git] DEBUG [detached HEAD cb4ad7c] merge master -Dorg -Ssuccess-only
2026-09-28 12:27:30,812 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-28 12:27:30,812 [ scc.repo] DEBUG ## PRs found:
2026-09-28 12:27:31,193 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 None
2026-09-28 12:27:31,728 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/issues/22 HTTP/1.1" 200 None
2026-09-28 12:27:31,729 [ scc.repo] DEBUG # ... Include label: dependencies
2026-09-28 12:27:32,407 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902?page=1 HTTP/1.1" 200 None
2026-09-28 12:27:32,994 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-09-28 12:27:33,580 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-09-28 12:27:34,151 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902?page=1 HTTP/1.1" 200 None
2026-09-28 12:27:34,697 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/statuses/2ee819462af52bf2878fadf06d6ebdbafb8f1902?per_page=1 HTTP/1.1" 200 2
2026-09-28 12:27:34,698 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-09-28 12:27:34,698 [ scc.repo] DEBUG ## Branches found:
2026-09-28 12:27:34,698 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2026-09-28 12:27:34,699 [ scc.git] DEBUG Get sha1 of %s
2026-09-28 12:27:34,699 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:27:34,721 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-09-28 12:27:34,743 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-09-28 12:27:34,743 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-09-28 12:27:34,786 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-09-28 12:27:34,957 [ scc.git] DEBUG Updating deab817..160d894
2026-09-28 12:27:35,640 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2026-09-28 12:27:35,641 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2026-09-28 12:27:36,160 [ scc.git] DEBUG From https://github.com/ome/omero-virtual-microscope
2026-09-28 12:27:36,160 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2026-09-28 12:27:36,187 [ scc.git] DEBUG ## Unique users: []
2026-09-28 12:27:36,187 [ scc.git] DEBUG Get sha1 of %s
2026-09-28 12:27:36,187 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:27:36,203 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2026-09-28 12:27:36,226 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:27:36,240 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2026-09-28 12:27:36,459 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-09-28 12:27:36,535 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-09-28 12:27:36,535 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-09-28 12:27:36,775 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-28 12:27:36,776 [ scc.git] DEBUG Calling 'git submodule update'
2026-09-28 12:27:36,898 [ scc.git] DEBUG Get sha1 of %s
2026-09-28 12:27:36,898 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:27:36,912 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-09-28 12:27:37,022 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-09-28 12:27:37,074 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff02aadbfd0> has no local changes
2026-09-28 12:27:37,074 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#91 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/91/)'
2026-09-28 12:27:37,202 [ scc.git] DEBUG [detached HEAD 3cb12dd] merge master -Dorg -Ssuccess-only
2026-09-28 12:27:37,204 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-28 12:27:37,204 [ scc.git] INFO Overriding base-branch from master to main
2026-09-28 12:27:37,204 [ scc.repo] DEBUG ## PRs found:
2026-09-28 12:27:37,550 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2026-09-28 12:27:38,073 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None
2026-09-28 12:27:38,572 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21/comments HTTP/1.1" 200 None
2026-09-28 12:27:39,130 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc?page=1 HTTP/1.1" 200 None
2026-09-28 12:27:39,719 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-09-28 12:27:40,287 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-09-28 12:27:41,570 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc?page=1 HTTP/1.1" 200 None
2026-09-28 12:27:42,113 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/d07067753650282c9e8cdbbeae37897b7ed0d4cc?per_page=1 HTTP/1.1" 200 2
2026-09-28 12:27:42,113 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import'
2026-09-28 12:27:42,649 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2026-09-28 12:27:43,188 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2026-09-28 12:27:44,785 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2026-09-28 12:27:45,376 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8?page=1 HTTP/1.1" 200 None
2026-09-28 12:27:45,906 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-09-28 12:27:46,408 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8?page=1 HTTP/1.1" 200 None
2026-09-28 12:27:46,882 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2026-09-28 12:27:46,883 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2026-09-28 12:27:46,883 [ scc.repo] DEBUG ## Branches found:
2026-09-28 12:27:46,883 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-09-28 12:27:46,884 [ scc.git] DEBUG Get sha1 of %s
2026-09-28 12:27:46,884 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:27:46,903 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2026-09-28 12:27:46,922 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-09-28 12:27:46,922 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2026-09-28 12:27:46,943 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2026-09-28 12:27:47,092 [ scc.git] DEBUG Updating 8f3c313..4e1e685
2026-09-28 12:27:47,769 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/23 HTTP/1.1" 200 None
2026-09-28 12:27:48,783 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/20 HTTP/1.1" 200 None
2026-09-28 12:27:48,785 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2026-09-28 12:27:49,404 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2026-09-28 12:27:49,404 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2026-09-28 12:27:49,429 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head'
2026-09-28 12:27:50,243 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2026-09-28 12:27:50,243 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD
2026-09-28 12:27:50,268 [ scc.git] DEBUG ## Unique users: []
2026-09-28 12:27:50,268 [ scc.git] DEBUG Get sha1 of %s
2026-09-28 12:27:50,268 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:27:50,282 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-09-28 12:27:50,312 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:27:50,327 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-09-28 12:27:50,535 [ scc.git] DEBUG Auto-merging README.rst
2026-09-28 12:27:50,535 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2026-09-28 12:27:50,535 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2026-09-28 12:27:50,535 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2026-09-28 12:27:50,559 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-09-28 12:27:50,560 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-09-28 12:27:50,593 [ scc.git] DEBUG Calling 'git reset --hard 4e1e685dff22136abfd2626f6fd6eaf985aba368'
2026-09-28 12:27:50,749 [ scc.git] DEBUG HEAD is now at 4e1e685 Merge pull request #23 from lubianat/patch-1
2026-09-28 12:27:50,953 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-28 12:27:50,953 [ scc.git] DEBUG Calling 'git merge-base 4e1e685dff22136abfd2626f6fd6eaf985aba368 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-09-28 12:27:50,985 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..4e1e685dff22136abfd2626f6fd6eaf985aba368'
2026-09-28 12:27:51,006 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#91](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/91/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/91/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2026-09-28 12:27:51,018 [ scc.config] DEBUG Found github.token
2026-09-28 12:27:51,018 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2026-09-28 12:27:51,019 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2026-09-28 12:27:51,069 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:27:51,083 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2026-09-28 12:27:51,321 [ scc.git] DEBUG Auto-merging README.rst
2026-09-28 12:27:51,321 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2026-09-28 12:27:51,401 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-09-28 12:27:51,483 [ scc.git] DEBUG README.rst | 3 +
2026-09-28 12:27:51,483 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++
2026-09-28 12:27:51,483 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 +
2026-09-28 12:27:51,483 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++-
2026-09-28 12:27:51,483 [ scc.git] DEBUG setup.py | 5 +-
2026-09-28 12:27:51,483 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-)
2026-09-28 12:27:51,483 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html
2026-09-28 12:27:51,691 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-28 12:27:51,691 [ scc.git] DEBUG Calling 'git submodule update'
2026-09-28 12:27:51,828 [ scc.git] DEBUG Get sha1 of %s
2026-09-28 12:27:51,828 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:27:51,841 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-09-28 12:27:51,944 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-09-28 12:27:52,008 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff029a25110> has no local changes
2026-09-28 12:27:52,008 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#91 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/91/)'
2026-09-28 12:27:52,136 [ scc.git] DEBUG [detached HEAD 48edb6a] merge master -Dorg -Ssuccess-only
2026-09-28 12:27:52,137 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-28 12:27:52,137 [ scc.repo] DEBUG ## PRs found:
2026-09-28 12:27:52,494 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 None
2026-09-28 12:27:53,245 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/issues/25 HTTP/1.1" 200 None
2026-09-28 12:27:53,246 [ scc.repo] DEBUG # ... Include label: dependencies
2026-09-28 12:27:53,797 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9?page=1 HTTP/1.1" 200 None
2026-09-28 12:27:54,392 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-09-28 12:27:55,122 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-09-28 12:27:55,699 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9?page=1 HTTP/1.1" 200 None
2026-09-28 12:27:56,223 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/statuses/c73bedb717b9ecce0af666245d3486aa5a2dafe9?per_page=1 HTTP/1.1" 200 2
2026-09-28 12:27:56,224 [ scc.repo] DEBUG - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-09-28 12:27:56,224 [ scc.repo] DEBUG ## Branches found:
2026-09-28 12:27:56,224 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-09-28 12:27:56,225 [ scc.git] DEBUG Get sha1 of %s
2026-09-28 12:27:56,225 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:27:56,245 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-09-28 12:27:56,262 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-09-28 12:27:56,262 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-09-28 12:27:56,285 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-09-28 12:27:56,341 [ scc.git] DEBUG Already up to date.
2026-09-28 12:27:56,341 [ scc.git] DEBUG Calling 'git fetch origin pull/25/head'
2026-09-28 12:27:56,846 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-weberror
2026-09-28 12:27:56,847 [ scc.git] DEBUG * branch refs/pull/25/head -> FETCH_HEAD
2026-09-28 12:27:56,870 [ scc.git] DEBUG ## Unique users: []
2026-09-28 12:27:56,870 [ scc.git] DEBUG Get sha1 of %s
2026-09-28 12:27:56,870 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:27:56,884 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2026-09-28 12:27:56,904 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:27:56,919 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2026-09-28 12:27:57,096 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-09-28 12:27:57,187 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-09-28 12:27:57,187 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-09-28 12:27:57,421 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-28 12:27:57,421 [ scc.git] DEBUG Calling 'git submodule update'
2026-09-28 12:27:57,543 [ scc.git] DEBUG Get sha1 of %s
2026-09-28 12:27:57,543 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:27:57,558 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-09-28 12:27:57,674 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-09-28 12:27:57,734 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff0299df190> has no local changes
2026-09-28 12:27:57,734 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#91 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/91/)'
2026-09-28 12:27:57,858 [ scc.git] DEBUG [detached HEAD 868250c] merge master -Dorg -Ssuccess-only
2026-09-28 12:27:57,860 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-28 12:27:57,860 [ scc.repo] DEBUG ## PRs found:
2026-09-28 12:27:58,218 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 None
2026-09-28 12:27:58,733 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/issues/37 HTTP/1.1" 200 None
2026-09-28 12:27:58,734 [ scc.repo] DEBUG # ... Include label: dependencies
2026-09-28 12:27:59,327 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478?page=1 HTTP/1.1" 200 None
2026-09-28 12:28:00,059 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-09-28 12:28:00,694 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-09-28 12:28:01,269 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478?page=1 HTTP/1.1" 200 None
2026-09-28 12:28:01,844 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/statuses/8cf5f7e65ae8e945b134e41e77bc13a785aff478?per_page=1 HTTP/1.1" 200 2
2026-09-28 12:28:01,845 [ scc.repo] DEBUG - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-09-28 12:28:01,845 [ scc.repo] DEBUG ## Branches found:
2026-09-28 12:28:01,845 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-09-28 12:28:01,846 [ scc.git] DEBUG Get sha1 of %s
2026-09-28 12:28:01,846 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:28:01,868 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-09-28 12:28:01,893 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-09-28 12:28:01,893 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-09-28 12:28:01,916 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-09-28 12:28:01,982 [ scc.git] DEBUG Already up to date.
2026-09-28 12:28:01,982 [ scc.git] DEBUG Calling 'git fetch origin pull/37/head'
2026-09-28 12:28:02,625 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-webtest
2026-09-28 12:28:02,626 [ scc.git] DEBUG * branch refs/pull/37/head -> FETCH_HEAD
2026-09-28 12:28:02,649 [ scc.git] DEBUG ## Unique users: []
2026-09-28 12:28:02,649 [ scc.git] DEBUG Get sha1 of %s
2026-09-28 12:28:02,649 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:28:02,663 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2026-09-28 12:28:02,686 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:28:02,701 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 37 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2026-09-28 12:28:02,936 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-09-28 12:28:03,020 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-09-28 12:28:03,020 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-09-28 12:28:04,305 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-28 12:28:04,305 [ scc.git] DEBUG Calling 'git submodule update'
2026-09-28 12:28:04,426 [ scc.git] DEBUG Get sha1 of %s
2026-09-28 12:28:04,426 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:28:04,439 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-09-28 12:28:04,553 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-09-28 12:28:04,615 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff02abefc90> has no local changes
2026-09-28 12:28:04,615 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#91 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/91/)'
2026-09-28 12:28:04,776 [ scc.git] DEBUG [detached HEAD b484ed4] merge master -Dorg -Ssuccess-only
2026-09-28 12:28:04,779 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-28 12:28:04,779 [ scc.repo] DEBUG ## PRs found:
2026-09-28 12:28:05,051 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 2
2026-09-28 12:28:05,051 [ scc.repo] DEBUG ## Branches found:
2026-09-28 12:28:05,051 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-09-28 12:28:05,053 [ scc.git] DEBUG Get sha1 of %s
2026-09-28 12:28:05,053 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:28:05,073 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-09-28 12:28:05,094 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-09-28 12:28:05,094 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-09-28 12:28:05,115 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-09-28 12:28:05,181 [ scc.git] DEBUG Already up to date.
2026-09-28 12:28:05,181 [ scc.git] DEBUG ## Unique users: []
2026-09-28 12:28:05,181 [ scc.git] DEBUG Get sha1 of %s
2026-09-28 12:28:05,181 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:28:05,198 [ scc.git] DEBUG Calling 'git submodule update'
2026-09-28 12:28:05,324 [ scc.git] DEBUG Get sha1 of %s
2026-09-28 12:28:05,324 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:28:05,340 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-09-28 12:28:05,465 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-09-28 12:28:05,586 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff028019090> has no local changes
2026-09-28 12:28:05,586 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Generated by OMERO-plugins-push#91 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/91/)'
2026-09-28 12:28:05,738 [ scc.git] DEBUG [detached HEAD 06bd003] merge master -Dorg -Ssuccess-only
2026-09-28 12:28:05,740 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-28 12:28:05,740 [ scc.git] INFO Overriding base-branch from master to develop
2026-09-28 12:28:05,740 [ scc.repo] DEBUG ## PRs found:
2026-09-28 12:28:06,181 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2026-09-28 12:28:06,686 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/232 HTTP/1.1" 200 None
2026-09-28 12:28:07,286 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f?page=1 HTTP/1.1" 200 None
2026-09-28 12:28:07,910 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-09-28 12:28:08,470 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-09-28 12:28:09,022 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f?page=1 HTTP/1.1" 200 None
2026-09-28 12:28:09,542 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/e190baa635f40826befc84321719243092ee849f?per_page=1 HTTP/1.1" 200 2
2026-09-28 12:28:09,542 [ scc.repo] DEBUG - PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`'
2026-09-28 12:28:09,542 [ scc.repo] DEBUG ## Branches found:
2026-09-28 12:28:09,542 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-09-28 12:28:09,543 [ scc.git] DEBUG Get sha1 of %s
2026-09-28 12:28:09,543 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:28:09,565 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2026-09-28 12:28:09,586 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-09-28 12:28:09,586 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2026-09-28 12:28:09,627 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2026-09-28 12:28:09,916 [ scc.git] DEBUG Updating 4b4c755..5b4d768
2026-09-28 12:28:10,722 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/231 HTTP/1.1" 200 None
2026-09-28 12:28:11,607 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/229 HTTP/1.1" 200 None
2026-09-28 12:28:12,605 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/223 HTTP/1.1" 200 None
2026-09-28 12:28:13,530 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/230 HTTP/1.1" 200 None
2026-09-28 12:28:14,392 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/228 HTTP/1.1" 200 None
2026-09-28 12:28:15,249 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2026-09-28 12:28:16,200 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2026-09-28 12:28:16,201 [ scc.git] DEBUG Calling 'git fetch origin pull/232/head'
2026-09-28 12:28:16,772 [ scc.git] DEBUG From https://github.com/ome/scripts
2026-09-28 12:28:16,772 [ scc.git] DEBUG * branch refs/pull/232/head -> FETCH_HEAD
2026-09-28 12:28:16,797 [ scc.git] DEBUG ## Unique users: []
2026-09-28 12:28:16,797 [ scc.git] DEBUG Get sha1 of %s
2026-09-28 12:28:16,797 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:28:16,812 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...e190baa635f40826befc84321719243092ee849f'
2026-09-28 12:28:16,844 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:28:16,857 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 232 (Add Auto header detection to `Populate_Metadata.py`) e190baa635f40826befc84321719243092ee849f'
2026-09-28 12:28:17,076 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-09-28 12:28:17,137 [ scc.git] DEBUG omero/import_scripts/Populate_Metadata.py | 26 ++++++++++++++++++++++++--
2026-09-28 12:28:17,137 [ scc.git] DEBUG 1 file changed, 24 insertions(+), 2 deletions(-)
2026-09-28 12:28:17,360 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-28 12:28:17,361 [ scc.git] DEBUG Calling 'git submodule update'
2026-09-28 12:28:17,484 [ scc.git] DEBUG Get sha1 of %s
2026-09-28 12:28:17,484 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-09-28 12:28:17,499 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-09-28 12:28:17,616 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-09-28 12:28:17,669 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff02aac4e50> has no local changes
2026-09-28 12:28:17,670 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Updating 4b4c755..5b4d768
Previously merged:
- PR 231 jburel 'Create Release '
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`'
Generated by OMERO-plugins-push#91 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/91/)'
2026-09-28 12:28:17,811 [ scc.git] DEBUG [detached HEAD 9f23d21] merge master -Dorg -Ssuccess-only
2026-09-28 12:28:17,814 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-28 12:28:17,814 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-09-28 12:28:18,074 [ scc.config] DEBUG Found submodule.figure.url
2026-09-28 12:28:18,274 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-28 12:28:18,309 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2026-09-28 12:28:18,726 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-28 12:28:18,755 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2026-09-28 12:28:18,763 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2026-09-28 12:28:19,173 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-28 12:28:19,203 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2026-09-28 12:28:19,211 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2026-09-28 12:28:19,625 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-28 12:28:19,657 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2026-09-28 12:28:19,665 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2026-09-28 12:28:20,059 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-28 12:28:20,099 [ scc.config] DEBUG Found submodule.omero-figure.url
2026-09-28 12:28:20,533 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-28 12:28:20,563 [ scc.config] DEBUG Found submodule.omero-figure.branch
2026-09-28 12:28:20,571 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2026-09-28 12:28:20,965 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-28 12:28:20,998 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2026-09-28 12:28:21,007 [ scc.config] DEBUG Found submodule.omero-gallery.url
2026-09-28 12:28:21,448 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-28 12:28:21,479 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2026-09-28 12:28:21,487 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2026-09-28 12:28:21,902 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-28 12:28:21,947 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2026-09-28 12:28:21,956 [ scc.config] DEBUG Found submodule.omero-mapr.url
2026-09-28 12:28:22,356 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-28 12:28:22,386 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2026-09-28 12:28:22,393 [ scc.config] DEBUG Found submodule.omero-metadata.url
2026-09-28 12:28:22,824 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-28 12:28:22,861 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2026-09-28 12:28:22,869 [ scc.config] DEBUG Found submodule.omero-parade.url
2026-09-28 12:28:23,259 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-28 12:28:23,291 [ scc.config] DEBUG Found submodule.omero-parade.branch
2026-09-28 12:28:23,299 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2026-09-28 12:28:23,926 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-28 12:28:23,963 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2026-09-28 12:28:23,972 [ scc.config] DEBUG Found submodule.omero-rois.url
2026-09-28 12:28:24,341 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-28 12:28:24,381 [ scc.config] DEBUG Found submodule.omero-signup.url
2026-09-28 12:28:24,780 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-28 12:28:24,821 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2026-09-28 12:28:25,208 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-28 12:28:25,242 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2026-09-28 12:28:25,251 [ scc.config] DEBUG Found submodule.omero-upload.url
2026-09-28 12:28:25,653 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-28 12:28:25,692 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2026-09-28 12:28:26,214 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-28 12:28:26,252 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2026-09-28 12:28:26,672 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-28 12:28:26,704 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2026-09-28 12:28:26,713 [ scc.config] DEBUG Found submodule.omero-weberror.url
2026-09-28 12:28:27,138 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-28 12:28:27,170 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2026-09-28 12:28:27,179 [ scc.config] DEBUG Found submodule.omero-webtest.url
2026-09-28 12:28:27,584 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-28 12:28:27,617 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2026-09-28 12:28:27,627 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2026-09-28 12:28:28,028 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-28 12:28:28,062 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2026-09-28 12:28:28,070 [ scc.config] DEBUG Found submodule.scripts.url
2026-09-28 12:28:28,471 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-09-28 12:28:28,507 [ scc.config] DEBUG Found submodule.scripts.branch
2026-09-28 12:28:28,507 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-09-28 12:28:30,793 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff02bcbc910> has local changes
2026-09-28 12:28:30,793 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/figure
Excluded PRs:
- PR 12 will-moore 'Browser based export' (stage: draft)
- PR 9 will-moore 'Save omezarr collection' (stage: draft)
Updating 3935875..833a7e1
Previously merged:
- PR 14 will-moore 'App served by omero env'
- PR 17 Rdornier 'Do not crop rotated panel at export'
- PR 15 will-moore 'Replace navbar 'OMERO' with 'figure' and OME logo'
Merged PRs:
- PR 5 will-moore 'Add sample_figures/ngff_images_figure.json'
- PR 19 Rdornier 'Fix rectangle crop'
- PR 20 will-moore 'Hide export dropdown unless omero'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Merged PRs:
- PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-cli-render
Excluded PRs:
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Updating ce6e13c..68b7303
Previously merged:
- PR 74 jburel 'Replace manual changelog by automated GH release step'
- PR 75 jburel 'Sort the new channels to ensure settings are set'
- PR 71 dominikl 'Escape slash character in image names'
- PR 69 dominikl 'Fix help text for impo/export commands'
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..d5f88d8
Previously merged:
- PR 193 dominikl 'Only parse import uris if stated'
- PR 182 will-moore 'Revert "Remove support for Plate import"'
- PR 194 will-moore 'Update uk1s3.embassy links to livingobjects'
- PR 197 pwalczysko 'Fix pragma'
- PR 196 will-moore 'Storage options only if needed'
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py'
- PR 192 jburel 'Set Omero pixel size'
- PR 186 jburel 'Create release from tag'
- PR 187 dominikl 'Fix target-by-name option'
- PR 180 will-moore 'Import command'
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 174 will-moore 'Skip wells'
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
Repository: ome/omero-figure
Updating 9cc36cde..3195c3df
Previously merged:
- PR 704 jburel 'Revert commit 49ae9c9'
- PR 703 will-moore 'Readme remove rc'
- PR 700 will-moore 'Fix parentheses in zoom level for loop for export script'
- PR 692 will-moore 'colorbar lut background fix'
- PR 701 will-moore 'bump nanoid to 3.3.18 with 'npm audit fix''
- PR 698 dependabot[bot] 'Bump dompurify from 3.4.9 to 3.4.13'
- PR 697 dependabot[bot] 'Bump postcss from 8.5.15 to 8.5.25'
- PR 695 dependabot[bot] 'Bump immutable from 5.1.6 to 5.1.9'
- PR 693 dependabot[bot] 'Bump dompurify from 3.4.0 to 3.4.9'
- PR 691 dependabot[bot] 'Bump esbuild and vite'
- PR 686 will-moore 'Add note about zarr etc requirement for export script with zarr images'
- PR 690 dependabot[bot] 'Bump postcss from 8.5.3 to 8.5.15'
- PR 681 dependabot[bot] 'Bump dompurify from 3.3.2 to 3.4.0'
- PR 688 will-moore 'app handles ?image=1 without needing /new?image=1'
- PR 685 will-moore 'Fix static files links for release build'
- PR 683 will-moore 'Add touch support for clicking on single panel'
- PR 680 will-moore 'Use --pre install for export script in README'
- PR 684 will-moore 'Fix PKG_VERSION fix in publish_pypi.yml'
- PR 682 will-moore 'Enable pre-release rc workflow with bumpversion and publish to pypi'
- PR 679 will-moore 'Remove commit from gist demoUrl to load latest, with livingobjects URLs'
- PR 677 dependabot[bot] 'Bump vite from 6.4.1 to 6.4.2'
- PR 666 will-moore 'Standalone app'
- PR 676 dependabot[bot] 'Bump picomatch'
- PR 669 will-moore 'Standalone python script'
- PR 662 will-moore 'Export script handles OME-zarr images'
- PR 663 will-moore 'Zarr'
- PR 674 dependabot[bot] 'Bump immutable from 4.1.0 to 4.3.8'
- PR 675 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.2'
- PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8'
- PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues'
- PR 667 Tom-TBT 'Label suggestion interface'
- PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID'
- PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
- PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0'
- PR 664 Nirkan 'Handle many channels '
- PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
- PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540'
- PR 661 Rdornier 'Align to grid - check if panels are already in the grid'
- PR 649 jburel 'Replace manual changelog by automated GH release step'
- PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
- PR 637 Rdornier 'Fix scalebar position'
- PR 600 Rdornier 'Label on rois'
- PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
- PR 651 Rdornier 'More compliant align to grid'
- PR 650 jburel 'Bump Python version'
- PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
- PR 646 JensWendt 'fix word wrap of image names'
- PR 612 will-moore 'Script version'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 616 Rdornier 'Fix labels around border'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 706 will-moore 'Figure repo migration'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
- PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
Updating 7a798cee..6c554250
Previously merged:
- PR 562 will-moore 'Keyboard select roi'
- PR 563 will-moore 'Use POST data for imgRdef save'
- PR 559 dependabot[bot] 'Bump js-yaml and mocha'
- PR 558 dependabot[bot] 'Bump fast-uri from 3.1.4 to 3.1.5'
- PR 557 dependabot[bot] 'Bump socket.io-parser from 4.2.6 to 4.2.7'
- PR 541 will-moore 'Only add channel to tile request string if active'
- PR 556 dependabot[bot] 'Bump webpack-dev-server from 5.2.6 to 6.0.0'
- PR 554 dependabot[bot] 'Bump http-proxy-middleware from 2.0.9 to 2.0.10'
- PR 553 dependabot[bot] 'Bump postcss from 8.5.10 to 8.5.25'
- PR 552 dependabot[bot] 'Bump tmp from 0.2.6 to 0.2.7'
- PR 551 dependabot[bot] 'Bump body-parser from 1.20.5 to 1.20.6'
- PR 550 dependabot[bot] 'Bump webpack-dev-server from 5.2.4 to 5.2.6'
- PR 549 dependabot[bot] 'Bump shell-quote from 1.8.4 to 1.10.0'
- PR 548 dependabot[bot] 'Bump fast-uri from 3.1.2 to 3.1.4'
- PR 547 dependabot[bot] 'Bump websocket-driver from 0.7.4 to 0.7.5'
- PR 540 dependabot[bot] 'Bump @babel/core from 7.5.4 to 7.29.6'
- PR 539 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter'
- PR 537 dependabot[bot] 'Bump launch-editor from 2.13.2 to 2.14.1'
- PR 535 dependabot[bot] 'Bump tmp and eslint'
- PR 527 PollenGeo 'Add grid overlay feature with configurable cell size and labels'
- PR 534 will-moore 'Fix settings.md link to master branch. Move iviewer redirect settings'
- PR 533 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter'
- PR 530 dependabot[bot] 'Bump webpack-dev-server from 4.13.2 to 5.2.4'
- PR 528 dependabot[bot] 'Bump fast-uri from 3.1.0 to 3.1.2'
- PR 529 will-moore 'Image id and roi id initial params'
- PR 526 will-moore 'Add keyboard handling for Left, Right, Up, Down Arrows to pan'
- PR 525 dependabot[bot] 'Bump postcss from 8.4.31 to 8.5.10'
- PR 524 dependabot[bot] 'Bump protocol-buffers-schema from 3.3.2 to 3.6.1'
- PR 523 dependabot[bot] 'Bump follow-redirects from 1.15.6 to 1.16.0'
- PR 522 dependabot[bot] 'Bump lodash from 4.17.21 to 4.18.1'
- PR 521 dependabot[bot] 'Bump brace-expansion from 1.1.11 to 1.1.13'
- PR 520 dependabot[bot] 'Bump node-forge from 1.3.1 to 1.4.0'
- PR 519 dependabot[bot] 'Bump picomatch from 2.3.1 to 2.3.2'
- PR 518 dependabot[bot] 'Bump ajv from 6.12.6 to 6.14.0'
- PR 514 Tom-TBT 'Fix where interpolate_pixels server config is read from'
- PR 513 jburel 'Bump Python version'
- PR 512 jburel 'Replace manual changelog by automated GH release step'
- PR 465 will-moore 'Save as Figure'
- PR 517 will-moore 'Fix roi link permissions'
- PR 516 dependabot[bot] 'Bump socket.io-parser from 4.2.4 to 4.2.6'
- PR 510 joshmoore 'Re-enable omero-test-infra'
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 564 dependabot[bot] 'Bump fast-uri from 3.1.5 to 3.1.7'
- PR 565 dependabot[bot] 'Bump qs and body-parser'
- PR 566 dependabot[bot] 'Bump js-yaml from 4.1.0 to 4.3.2'
- PR 567 will-moore 'Basic fix of prev/next shapes when shapes sorted'
Conflicting PRs (not included):
- PR 532 will-moore 'Zarr layers'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
- PR 74 will-moore 'mapr extension of webclient' (exclude comment)
Already up to date.
Merged PRs:
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
- PR 97 JoshuaFortriede 'BUG Fix: use HTML value to replace HTML'
- PR 98 JoshuaFortriede 'use namespace with keys'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-metadata
Updating 3cd120c..6a653e4
Previously merged:
- PR 95 sbesson 'Remove manual CHANGELOG in favor of automated GitHub releases'
- PR 94 sbesson 'Cap pandas to 2.x and clean up unused dependencies'
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 92 dominikl 'add resolve_rois to projectwrapper'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Updating bdfeb5e..fc9ff96
Previously merged:
- PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml'
- PR 35 will-moore 'Add roi to array functions'
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Merged PRs:
- PR 74 joshmoore 'Add 'ms' target for ./docker'
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/rOMERO-gateway
Already up to date.
Repository: ome/scripts
Updating 4b4c755..5b4d768
Previously merged:
- PR 231 jburel 'Create Release '
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`'
Generated by OMERO-plugins-push#91 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/91/)'
2026-09-28 12:28:31,419 [ scc.git] DEBUG [detached HEAD f63be78] merge master -Dorg -Ssuccess-only
2026-09-28 12:28:31,419 [ scc.git] DEBUG 24 files changed, 46 insertions(+), 46 deletions(-)
2026-09-28 12:28:31,421 [ scc.merge] INFO Repository: ome/omero-plugins
2026-09-28 12:28:31,421 [ scc.merge] INFO Already up to date.
2026-09-28 12:28:31,421 [ scc.merge] INFO
2026-09-28 12:28:31,421 [ scc.merge] INFO Merged PRs:
2026-09-28 12:28:31,421 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2026-09-28 12:28:31,421 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2026-09-28 12:28:31,421 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2026-09-28 12:28:31,421 [ scc.merge] INFO
2026-09-28 12:28:31,421 [ scc.merge] INFO Repository: ome/figure
2026-09-28 12:28:31,421 [ scc.merge] INFO Excluded PRs:
2026-09-28 12:28:31,421 [ scc.merge] INFO - PR 12 will-moore 'Browser based export' (stage: draft)
2026-09-28 12:28:31,421 [ scc.merge] INFO - PR 9 will-moore 'Save omezarr collection' (stage: draft)
2026-09-28 12:28:31,421 [ scc.merge] INFO Updating 3935875..833a7e1
2026-09-28 12:28:31,421 [ scc.merge] INFO Previously merged:
2026-09-28 12:28:31,421 [ scc.merge] INFO - PR 14 will-moore 'App served by omero env'
2026-09-28 12:28:31,421 [ scc.merge] INFO - PR 17 Rdornier 'Do not crop rotated panel at export'
2026-09-28 12:28:31,421 [ scc.merge] INFO - PR 15 will-moore 'Replace navbar 'OMERO' with 'figure' and OME logo'
2026-09-28 12:28:31,421 [ scc.merge] INFO
2026-09-28 12:28:31,421 [ scc.merge] INFO Merged PRs:
2026-09-28 12:28:31,421 [ scc.merge] INFO - PR 5 will-moore 'Add sample_figures/ngff_images_figure.json'
2026-09-28 12:28:31,421 [ scc.merge] INFO - PR 19 Rdornier 'Fix rectangle crop'
2026-09-28 12:28:31,421 [ scc.merge] INFO - PR 20 will-moore 'Hide export dropdown unless omero'
2026-09-28 12:28:31,421 [ scc.merge] INFO
2026-09-28 12:28:31,421 [ scc.merge] INFO Repository: ome/minimal-omero-client
2026-09-28 12:28:31,421 [ scc.merge] INFO Already up to date.
2026-09-28 12:28:31,421 [ scc.merge] INFO
2026-09-28 12:28:31,421 [ scc.merge] INFO
2026-09-28 12:28:31,421 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2026-09-28 12:28:31,421 [ scc.merge] INFO Excluded PRs:
2026-09-28 12:28:31,421 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2026-09-28 12:28:31,421 [ scc.merge] INFO Already up to date.
2026-09-28 12:28:31,421 [ scc.merge] INFO
2026-09-28 12:28:31,421 [ scc.merge] INFO Merged PRs:
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-09-28 12:28:31,422 [ scc.merge] INFO
2026-09-28 12:28:31,422 [ scc.merge] INFO Repository: ome/omero-cli-render
2026-09-28 12:28:31,422 [ scc.merge] INFO Excluded PRs:
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2026-09-28 12:28:31,422 [ scc.merge] INFO Updating ce6e13c..68b7303
2026-09-28 12:28:31,422 [ scc.merge] INFO Previously merged:
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 74 jburel 'Replace manual changelog by automated GH release step'
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 75 jburel 'Sort the new channels to ensure settings are set'
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2026-09-28 12:28:31,422 [ scc.merge] INFO
2026-09-28 12:28:31,422 [ scc.merge] INFO Merged PRs:
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2026-09-28 12:28:31,422 [ scc.merge] INFO
2026-09-28 12:28:31,422 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2026-09-28 12:28:31,422 [ scc.merge] INFO Excluded PRs:
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2026-09-28 12:28:31,422 [ scc.merge] INFO Updating 11d3587..d5f88d8
2026-09-28 12:28:31,422 [ scc.merge] INFO Previously merged:
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 193 dominikl 'Only parse import uris if stated'
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"'
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 194 will-moore 'Update uk1s3.embassy links to livingobjects'
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 197 pwalczysko 'Fix pragma'
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 196 will-moore 'Storage options only if needed'
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py'
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 192 jburel 'Set Omero pixel size'
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 186 jburel 'Create release from tag'
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 187 dominikl 'Fix target-by-name option'
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 180 will-moore 'Import command'
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-09-28 12:28:31,422 [ scc.merge] INFO
2026-09-28 12:28:31,422 [ scc.merge] INFO Conflicting PRs (not included):
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 174 will-moore 'Skip wells'
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2026-09-28 12:28:31,422 [ scc.merge] INFO
2026-09-28 12:28:31,422 [ scc.merge] INFO Repository: ome/omero-figure
2026-09-28 12:28:31,422 [ scc.merge] INFO Updating 9cc36cde..3195c3df
2026-09-28 12:28:31,422 [ scc.merge] INFO Previously merged:
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 704 jburel 'Revert commit 49ae9c9'
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 703 will-moore 'Readme remove rc'
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 700 will-moore 'Fix parentheses in zoom level for loop for export script'
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 692 will-moore 'colorbar lut background fix'
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 701 will-moore 'bump nanoid to 3.3.18 with 'npm audit fix''
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 698 dependabot[bot] 'Bump dompurify from 3.4.9 to 3.4.13'
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 697 dependabot[bot] 'Bump postcss from 8.5.15 to 8.5.25'
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 695 dependabot[bot] 'Bump immutable from 5.1.6 to 5.1.9'
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 693 dependabot[bot] 'Bump dompurify from 3.4.0 to 3.4.9'
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 691 dependabot[bot] 'Bump esbuild and vite'
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 686 will-moore 'Add note about zarr etc requirement for export script with zarr images'
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 690 dependabot[bot] 'Bump postcss from 8.5.3 to 8.5.15'
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 681 dependabot[bot] 'Bump dompurify from 3.3.2 to 3.4.0'
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 688 will-moore 'app handles ?image=1 without needing /new?image=1'
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 685 will-moore 'Fix static files links for release build'
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 683 will-moore 'Add touch support for clicking on single panel'
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 680 will-moore 'Use --pre install for export script in README'
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 684 will-moore 'Fix PKG_VERSION fix in publish_pypi.yml'
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 682 will-moore 'Enable pre-release rc workflow with bumpversion and publish to pypi'
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 679 will-moore 'Remove commit from gist demoUrl to load latest, with livingobjects URLs'
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 677 dependabot[bot] 'Bump vite from 6.4.1 to 6.4.2'
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 666 will-moore 'Standalone app'
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 676 dependabot[bot] 'Bump picomatch'
2026-09-28 12:28:31,422 [ scc.merge] INFO - PR 669 will-moore 'Standalone python script'
2026-09-28 12:28:31,423 [ scc.merge] INFO - PR 662 will-moore 'Export script handles OME-zarr images'
2026-09-28 12:28:31,423 [ scc.merge] INFO - PR 663 will-moore 'Zarr'
2026-09-28 12:28:31,423 [ scc.merge] INFO - PR 674 dependabot[bot] 'Bump immutable from 4.1.0 to 4.3.8'
2026-09-28 12:28:31,423 [ scc.merge] INFO - PR 675 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.2'
2026-09-28 12:28:31,423 [ scc.merge] INFO - PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8'
2026-09-28 12:28:31,423 [ scc.merge] INFO - PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues'
2026-09-28 12:28:31,423 [ scc.merge] INFO - PR 667 Tom-TBT 'Label suggestion interface'
2026-09-28 12:28:31,423 [ scc.merge] INFO - PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID'
2026-09-28 12:28:31,423 [ scc.merge] INFO - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
2026-09-28 12:28:31,423 [ scc.merge] INFO - PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0'
2026-09-28 12:28:31,423 [ scc.merge] INFO - PR 664 Nirkan 'Handle many channels '
2026-09-28 12:28:31,423 [ scc.merge] INFO - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
2026-09-28 12:28:31,423 [ scc.merge] INFO - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540'
2026-09-28 12:28:31,423 [ scc.merge] INFO - PR 661 Rdornier 'Align to grid - check if panels are already in the grid'
2026-09-28 12:28:31,423 [ scc.merge] INFO - PR 649 jburel 'Replace manual changelog by automated GH release step'
2026-09-28 12:28:31,423 [ scc.merge] INFO - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
2026-09-28 12:28:31,423 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2026-09-28 12:28:31,423 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2026-09-28 12:28:31,423 [ scc.merge] INFO - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
2026-09-28 12:28:31,423 [ scc.merge] INFO - PR 651 Rdornier 'More compliant align to grid'
2026-09-28 12:28:31,423 [ scc.merge] INFO - PR 650 jburel 'Bump Python version'
2026-09-28 12:28:31,423 [ scc.merge] INFO - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
2026-09-28 12:28:31,423 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2026-09-28 12:28:31,423 [ scc.merge] INFO - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
2026-09-28 12:28:31,423 [ scc.merge] INFO - PR 646 JensWendt 'fix word wrap of image names'
2026-09-28 12:28:31,423 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2026-09-28 12:28:31,423 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2026-09-28 12:28:31,423 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2026-09-28 12:28:31,423 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2026-09-28 12:28:31,423 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2026-09-28 12:28:31,423 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2026-09-28 12:28:31,423 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2026-09-28 12:28:31,423 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2026-09-28 12:28:31,423 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-09-28 12:28:31,423 [ scc.merge] INFO
2026-09-28 12:28:31,423 [ scc.merge] INFO Merged PRs:
2026-09-28 12:28:31,423 [ scc.merge] INFO - PR 706 will-moore 'Figure repo migration'
2026-09-28 12:28:31,423 [ scc.merge] INFO
2026-09-28 12:28:31,423 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2026-09-28 12:28:31,423 [ scc.merge] INFO Already up to date.
2026-09-28 12:28:31,423 [ scc.merge] INFO
2026-09-28 12:28:31,423 [ scc.merge] INFO Merged PRs:
2026-09-28 12:28:31,423 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2026-09-28 12:28:31,423 [ scc.merge] INFO - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-09-28 12:28:31,423 [ scc.merge] INFO
2026-09-28 12:28:31,423 [ scc.merge] INFO Repository: ome/omero-gallery
2026-09-28 12:28:31,423 [ scc.merge] INFO Already up to date.
2026-09-28 12:28:31,423 [ scc.merge] INFO
2026-09-28 12:28:31,423 [ scc.merge] INFO Merged PRs:
2026-09-28 12:28:31,423 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2026-09-28 12:28:31,423 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2026-09-28 12:28:31,423 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2026-09-28 12:28:31,423 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2026-09-28 12:28:31,423 [ scc.merge] INFO
2026-09-28 12:28:31,423 [ scc.merge] INFO Conflicting PRs (not included):
2026-09-28 12:28:31,423 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2026-09-28 12:28:31,423 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2026-09-28 12:28:31,423 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2026-09-28 12:28:31,423 [ scc.merge] INFO
2026-09-28 12:28:31,423 [ scc.merge] INFO Repository: ome/omero-iviewer
2026-09-28 12:28:31,423 [ scc.merge] INFO Excluded PRs:
2026-09-28 12:28:31,423 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2026-09-28 12:28:31,423 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2026-09-28 12:28:31,423 [ scc.merge] INFO Updating 7a798cee..6c554250
2026-09-28 12:28:31,423 [ scc.merge] INFO Previously merged:
2026-09-28 12:28:31,423 [ scc.merge] INFO - PR 562 will-moore 'Keyboard select roi'
2026-09-28 12:28:31,423 [ scc.merge] INFO - PR 563 will-moore 'Use POST data for imgRdef save'
2026-09-28 12:28:31,423 [ scc.merge] INFO - PR 559 dependabot[bot] 'Bump js-yaml and mocha'
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 558 dependabot[bot] 'Bump fast-uri from 3.1.4 to 3.1.5'
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 557 dependabot[bot] 'Bump socket.io-parser from 4.2.6 to 4.2.7'
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 541 will-moore 'Only add channel to tile request string if active'
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 556 dependabot[bot] 'Bump webpack-dev-server from 5.2.6 to 6.0.0'
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 554 dependabot[bot] 'Bump http-proxy-middleware from 2.0.9 to 2.0.10'
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 553 dependabot[bot] 'Bump postcss from 8.5.10 to 8.5.25'
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 552 dependabot[bot] 'Bump tmp from 0.2.6 to 0.2.7'
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 551 dependabot[bot] 'Bump body-parser from 1.20.5 to 1.20.6'
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 550 dependabot[bot] 'Bump webpack-dev-server from 5.2.4 to 5.2.6'
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 549 dependabot[bot] 'Bump shell-quote from 1.8.4 to 1.10.0'
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 548 dependabot[bot] 'Bump fast-uri from 3.1.2 to 3.1.4'
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 547 dependabot[bot] 'Bump websocket-driver from 0.7.4 to 0.7.5'
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 540 dependabot[bot] 'Bump @babel/core from 7.5.4 to 7.29.6'
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 539 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter'
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 537 dependabot[bot] 'Bump launch-editor from 2.13.2 to 2.14.1'
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 535 dependabot[bot] 'Bump tmp and eslint'
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 527 PollenGeo 'Add grid overlay feature with configurable cell size and labels'
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 534 will-moore 'Fix settings.md link to master branch. Move iviewer redirect settings'
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 533 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter'
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 530 dependabot[bot] 'Bump webpack-dev-server from 4.13.2 to 5.2.4'
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 528 dependabot[bot] 'Bump fast-uri from 3.1.0 to 3.1.2'
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 529 will-moore 'Image id and roi id initial params'
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 526 will-moore 'Add keyboard handling for Left, Right, Up, Down Arrows to pan'
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 525 dependabot[bot] 'Bump postcss from 8.4.31 to 8.5.10'
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 524 dependabot[bot] 'Bump protocol-buffers-schema from 3.3.2 to 3.6.1'
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 523 dependabot[bot] 'Bump follow-redirects from 1.15.6 to 1.16.0'
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 522 dependabot[bot] 'Bump lodash from 4.17.21 to 4.18.1'
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 521 dependabot[bot] 'Bump brace-expansion from 1.1.11 to 1.1.13'
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 520 dependabot[bot] 'Bump node-forge from 1.3.1 to 1.4.0'
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 519 dependabot[bot] 'Bump picomatch from 2.3.1 to 2.3.2'
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 518 dependabot[bot] 'Bump ajv from 6.12.6 to 6.14.0'
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 514 Tom-TBT 'Fix where interpolate_pixels server config is read from'
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 513 jburel 'Bump Python version'
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 512 jburel 'Replace manual changelog by automated GH release step'
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 517 will-moore 'Fix roi link permissions'
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 516 dependabot[bot] 'Bump socket.io-parser from 4.2.4 to 4.2.6'
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 510 joshmoore 'Re-enable omero-test-infra'
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-09-28 12:28:31,424 [ scc.merge] INFO
2026-09-28 12:28:31,424 [ scc.merge] INFO Merged PRs:
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 564 dependabot[bot] 'Bump fast-uri from 3.1.5 to 3.1.7'
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 565 dependabot[bot] 'Bump qs and body-parser'
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 566 dependabot[bot] 'Bump js-yaml from 4.1.0 to 4.3.2'
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 567 will-moore 'Basic fix of prev/next shapes when shapes sorted'
2026-09-28 12:28:31,424 [ scc.merge] INFO
2026-09-28 12:28:31,424 [ scc.merge] INFO Conflicting PRs (not included):
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 532 will-moore 'Zarr layers'
2026-09-28 12:28:31,424 [ scc.merge] INFO
2026-09-28 12:28:31,424 [ scc.merge] INFO Repository: ome/omero-mapr
2026-09-28 12:28:31,424 [ scc.merge] INFO Excluded PRs:
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient' (exclude comment)
2026-09-28 12:28:31,424 [ scc.merge] INFO Already up to date.
2026-09-28 12:28:31,424 [ scc.merge] INFO
2026-09-28 12:28:31,424 [ scc.merge] INFO Merged PRs:
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 97 JoshuaFortriede 'BUG Fix: use HTML value to replace HTML'
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 98 JoshuaFortriede 'use namespace with keys'
2026-09-28 12:28:31,424 [ scc.merge] INFO
2026-09-28 12:28:31,424 [ scc.merge] INFO Conflicting PRs (not included):
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-09-28 12:28:31,424 [ scc.merge] INFO
2026-09-28 12:28:31,424 [ scc.merge] INFO Repository: ome/omero-metadata
2026-09-28 12:28:31,424 [ scc.merge] INFO Updating 3cd120c..6a653e4
2026-09-28 12:28:31,424 [ scc.merge] INFO Previously merged:
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 95 sbesson 'Remove manual CHANGELOG in favor of automated GitHub releases'
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 94 sbesson 'Cap pandas to 2.x and clean up unused dependencies'
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-09-28 12:28:31,424 [ scc.merge] INFO
2026-09-28 12:28:31,424 [ scc.merge] INFO Merged PRs:
2026-09-28 12:28:31,424 [ scc.merge] INFO - PR 92 dominikl 'add resolve_rois to projectwrapper'
2026-09-28 12:28:31,424 [ scc.merge] INFO
2026-09-28 12:28:31,424 [ scc.merge] INFO Conflicting PRs (not included):
2026-09-28 12:28:31,425 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2026-09-28 12:28:31,425 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2026-09-28 12:28:31,425 [ scc.merge] INFO
2026-09-28 12:28:31,425 [ scc.merge] INFO Repository: ome/omero-parade
2026-09-28 12:28:31,425 [ scc.merge] INFO Excluded PRs:
2026-09-28 12:28:31,425 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2026-09-28 12:28:31,425 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2026-09-28 12:28:31,425 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2026-09-28 12:28:31,425 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2026-09-28 12:28:31,425 [ scc.merge] INFO Already up to date.
2026-09-28 12:28:31,425 [ scc.merge] INFO
2026-09-28 12:28:31,425 [ scc.merge] INFO Merged PRs:
2026-09-28 12:28:31,425 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2026-09-28 12:28:31,425 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2026-09-28 12:28:31,425 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-09-28 12:28:31,425 [ scc.merge] INFO
2026-09-28 12:28:31,425 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2026-09-28 12:28:31,425 [ scc.merge] INFO Already up to date.
2026-09-28 12:28:31,425 [ scc.merge] INFO
2026-09-28 12:28:31,425 [ scc.merge] INFO Merged PRs:
2026-09-28 12:28:31,425 [ scc.merge] INFO - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-09-28 12:28:31,425 [ scc.merge] INFO
2026-09-28 12:28:31,425 [ scc.merge] INFO Repository: ome/omero-rois
2026-09-28 12:28:31,425 [ scc.merge] INFO Excluded PRs:
2026-09-28 12:28:31,425 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2026-09-28 12:28:31,425 [ scc.merge] INFO Updating bdfeb5e..fc9ff96
2026-09-28 12:28:31,425 [ scc.merge] INFO Previously merged:
2026-09-28 12:28:31,425 [ scc.merge] INFO - PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml'
2026-09-28 12:28:31,425 [ scc.merge] INFO - PR 35 will-moore 'Add roi to array functions'
2026-09-28 12:28:31,425 [ scc.merge] INFO
2026-09-28 12:28:31,425 [ scc.merge] INFO
2026-09-28 12:28:31,425 [ scc.merge] INFO Repository: ome/omero-signup
2026-09-28 12:28:31,425 [ scc.merge] INFO Already up to date.
2026-09-28 12:28:31,425 [ scc.merge] INFO
2026-09-28 12:28:31,425 [ scc.merge] INFO Merged PRs:
2026-09-28 12:28:31,425 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-09-28 12:28:31,425 [ scc.merge] INFO
2026-09-28 12:28:31,425 [ scc.merge] INFO Conflicting PRs (not included):
2026-09-28 12:28:31,425 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2026-09-28 12:28:31,425 [ scc.merge] INFO
2026-09-28 12:28:31,425 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2026-09-28 12:28:31,425 [ scc.merge] INFO Excluded PRs:
2026-09-28 12:28:31,425 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2026-09-28 12:28:31,425 [ scc.merge] INFO Updating cda3ec6..c8a0015
2026-09-28 12:28:31,425 [ scc.merge] INFO Previously merged:
2026-09-28 12:28:31,425 [ scc.merge] INFO - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
2026-09-28 12:28:31,425 [ scc.merge] INFO - PR 82 jburel 'Upgrade python'
2026-09-28 12:28:31,425 [ scc.merge] INFO - PR 81 erickmartins 'add ulimits to omero-server container'
2026-09-28 12:28:31,425 [ scc.merge] INFO
2026-09-28 12:28:31,425 [ scc.merge] INFO Merged PRs:
2026-09-28 12:28:31,425 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker'
2026-09-28 12:28:31,425 [ scc.merge] INFO
2026-09-28 12:28:31,425 [ scc.merge] INFO Repository: ome/omero-upload
2026-09-28 12:28:31,425 [ scc.merge] INFO Already up to date.
2026-09-28 12:28:31,425 [ scc.merge] INFO
2026-09-28 12:28:31,425 [ scc.merge] INFO Merged PRs:
2026-09-28 12:28:31,425 [ scc.merge] INFO - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-09-28 12:28:31,425 [ scc.merge] INFO
2026-09-28 12:28:31,425 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2026-09-28 12:28:31,425 [ scc.merge] INFO Updating deab817..160d894
2026-09-28 12:28:31,425 [ scc.merge] INFO Previously merged:
2026-09-28 12:28:31,425 [ scc.merge] INFO - PR 20 jburel 'Build'
2026-09-28 12:28:31,425 [ scc.merge] INFO
2026-09-28 12:28:31,425 [ scc.merge] INFO Merged PRs:
2026-09-28 12:28:31,425 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-09-28 12:28:31,425 [ scc.merge] INFO
2026-09-28 12:28:31,425 [ scc.merge] INFO Repository: ome/omero-web-zarr
2026-09-28 12:28:31,425 [ scc.merge] INFO Excluded PRs:
2026-09-28 12:28:31,425 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2026-09-28 12:28:31,425 [ scc.merge] INFO Updating 8f3c313..4e1e685
2026-09-28 12:28:31,425 [ scc.merge] INFO Previously merged:
2026-09-28 12:28:31,425 [ scc.merge] INFO - PR 23 lubianat 'Fix mix of .rst and .md on README'
2026-09-28 12:28:31,425 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2026-09-28 12:28:31,425 [ scc.merge] INFO
2026-09-28 12:28:31,426 [ scc.merge] INFO Merged PRs:
2026-09-28 12:28:31,426 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import'
2026-09-28 12:28:31,426 [ scc.merge] INFO
2026-09-28 12:28:31,426 [ scc.merge] INFO Conflicting PRs (not included):
2026-09-28 12:28:31,426 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2026-09-28 12:28:31,426 [ scc.merge] INFO
2026-09-28 12:28:31,426 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2026-09-28 12:28:31,426 [ scc.merge] INFO Already up to date.
2026-09-28 12:28:31,426 [ scc.merge] INFO
2026-09-28 12:28:31,426 [ scc.merge] INFO Merged PRs:
2026-09-28 12:28:31,426 [ scc.merge] INFO - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-09-28 12:28:31,426 [ scc.merge] INFO
2026-09-28 12:28:31,426 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2026-09-28 12:28:31,426 [ scc.merge] INFO Already up to date.
2026-09-28 12:28:31,426 [ scc.merge] INFO
2026-09-28 12:28:31,426 [ scc.merge] INFO Merged PRs:
2026-09-28 12:28:31,426 [ scc.merge] INFO - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-09-28 12:28:31,426 [ scc.merge] INFO
2026-09-28 12:28:31,426 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2026-09-28 12:28:31,426 [ scc.merge] INFO Already up to date.
2026-09-28 12:28:31,426 [ scc.merge] INFO
2026-09-28 12:28:31,426 [ scc.merge] INFO
2026-09-28 12:28:31,426 [ scc.merge] INFO Repository: ome/scripts
2026-09-28 12:28:31,426 [ scc.merge] INFO Updating 4b4c755..5b4d768
2026-09-28 12:28:31,426 [ scc.merge] INFO Previously merged:
2026-09-28 12:28:31,426 [ scc.merge] INFO - PR 231 jburel 'Create Release '
2026-09-28 12:28:31,426 [ scc.merge] INFO - PR 229 Rdornier 'Adding support for custom user label'
2026-09-28 12:28:31,426 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2026-09-28 12:28:31,426 [ scc.merge] INFO - PR 230 Rdornier 'Import from csv fix'
2026-09-28 12:28:31,426 [ scc.merge] INFO - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
2026-09-28 12:28:31,426 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2026-09-28 12:28:31,426 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2026-09-28 12:28:31,426 [ scc.merge] INFO
2026-09-28 12:28:31,426 [ scc.merge] INFO Merged PRs:
2026-09-28 12:28:31,426 [ scc.merge] INFO - PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`'
2026-09-28 12:28:31,426 [ scc.merge] INFO
2026-09-28 12:28:31,426 [ scc.merge] DEBUG Cleaning remote branches created for merging
2026-09-28 12:28:31,426 [ scc.git] DEBUG Calling 'git remote'
2026-09-28 12:28:31,440 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/figure
2026-09-28 12:28:31,441 [ scc.git] DEBUG Calling 'git remote'
2026-09-28 12:28:31,459 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-28 12:28:31,459 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2026-09-28 12:28:31,459 [ scc.git] DEBUG Calling 'git remote'
2026-09-28 12:28:31,477 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-28 12:28:31,477 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2026-09-28 12:28:31,477 [ scc.git] DEBUG Calling 'git remote'
2026-09-28 12:28:31,493 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-28 12:28:31,493 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2026-09-28 12:28:31,493 [ scc.git] DEBUG Calling 'git remote'
2026-09-28 12:28:31,510 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-28 12:28:31,510 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2026-09-28 12:28:31,510 [ scc.git] DEBUG Calling 'git remote'
2026-09-28 12:28:31,527 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-28 12:28:31,528 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2026-09-28 12:28:31,528 [ scc.git] DEBUG Calling 'git remote'
2026-09-28 12:28:31,543 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-28 12:28:31,543 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2026-09-28 12:28:31,543 [ scc.git] DEBUG Calling 'git remote'
2026-09-28 12:28:31,559 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-28 12:28:31,559 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2026-09-28 12:28:31,559 [ scc.git] DEBUG Calling 'git remote'
2026-09-28 12:28:31,576 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-28 12:28:31,576 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2026-09-28 12:28:31,576 [ scc.git] DEBUG Calling 'git remote'
2026-09-28 12:28:31,591 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-28 12:28:31,591 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2026-09-28 12:28:31,591 [ scc.git] DEBUG Calling 'git remote'
2026-09-28 12:28:31,608 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-28 12:28:31,608 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2026-09-28 12:28:31,608 [ scc.git] DEBUG Calling 'git remote'
2026-09-28 12:28:31,624 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-28 12:28:31,624 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2026-09-28 12:28:31,624 [ scc.git] DEBUG Calling 'git remote'
2026-09-28 12:28:31,640 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-28 12:28:31,640 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2026-09-28 12:28:31,640 [ scc.git] DEBUG Calling 'git remote'
2026-09-28 12:28:31,656 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-28 12:28:31,656 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2026-09-28 12:28:31,656 [ scc.git] DEBUG Calling 'git remote'
2026-09-28 12:28:31,671 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-28 12:28:31,671 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2026-09-28 12:28:31,671 [ scc.git] DEBUG Calling 'git remote'
2026-09-28 12:28:31,687 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-28 12:28:31,687 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2026-09-28 12:28:31,687 [ scc.git] DEBUG Calling 'git remote'
2026-09-28 12:28:31,702 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-28 12:28:31,703 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2026-09-28 12:28:31,703 [ scc.git] DEBUG Calling 'git remote'
2026-09-28 12:28:31,717 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-28 12:28:31,718 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2026-09-28 12:28:31,718 [ scc.git] DEBUG Calling 'git remote'
2026-09-28 12:28:31,731 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-28 12:28:31,731 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-09-28 12:28:31,731 [ scc.git] DEBUG Calling 'git remote'
2026-09-28 12:28:31,746 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-28 12:28:31,746 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-09-28 12:28:31,746 [ scc.git] DEBUG Calling 'git remote'
2026-09-28 12:28:31,762 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-28 12:28:31,762 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-09-28 12:28:31,762 [ scc.git] DEBUG Calling 'git remote'
2026-09-28 12:28:31,778 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-28 12:28:31,778 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-09-28 12:28:31,778 [ scc.git] DEBUG Calling 'git remote'
2026-09-28 12:28:31,792 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-09-28 12:28:31,792 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-09-28 12:28:31,792 [ scc.git] DEBUG Calling 'git remote'
2026-09-28 12:28:31,809 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/figure/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/figure/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
grep: build.gradle: No such file or directory
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Updating omero-gateway from 5.10.0 to 5.11.1-SNAPSHOT
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Commit all component version changes
Entering 'figure'
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'figure'
HEAD detached from 3935875
nothing to commit, working tree clean
Entering 'minimal-omero-client'
[detached HEAD 8791d6e] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798cee
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD f5a9e97] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2026-09-28 12:29:48,028 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2026-09-28 12:29:59,713 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2026-09-28 12:30:03,360 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-09-28 12:30:09,100 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-09-28 12:31:17,345 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
