Console Output
Skipping 169 KB..
Full Log/1.1" 200 None
2026-05-05 07:44:36,380 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-05-05 07:44:36,896 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d?page=1 HTTP/1.1" 200 None
2026-05-05 07:44:37,364 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1896cfebc876f939f8d83bd1cf56b8584ff2921d?per_page=1 HTTP/1.1" 200 2
2026-05-05 07:44:37,364 [ scc.repo] DEBUG - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-05-05 07:44:37,910 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None
2026-05-05 07:44:38,529 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None
2026-05-05 07:44:39,120 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322?page=1 HTTP/1.1" 200 None
2026-05-05 07:44:39,639 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-05-05 07:44:40,110 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322?page=1 HTTP/1.1" 200 None
2026-05-05 07:44:40,581 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/45ee35acc44a7d119aa20b38b0427efbe5405322?per_page=1 HTTP/1.1" 200 2
2026-05-05 07:44:40,582 [ scc.repo] DEBUG - PR 74 will-moore 'mapr extension of webclient'
2026-05-05 07:44:40,582 [ scc.repo] DEBUG ## Branches found:
2026-05-05 07:44:40,582 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2026-05-05 07:44:40,582 [ scc.git] DEBUG Get sha1 of %s
2026-05-05 07:44:40,582 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:44:40,585 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-05-05 07:44:40,587 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-05-05 07:44:40,587 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-05-05 07:44:40,590 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-05-05 07:44:40,592 [ scc.git] DEBUG Already up to date.
2026-05-05 07:44:40,593 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head'
2026-05-05 07:44:40,954 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-05-05 07:44:40,954 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD
2026-05-05 07:44:40,958 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head'
2026-05-05 07:44:41,291 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-05-05 07:44:41,291 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD
2026-05-05 07:44:41,295 [ scc.git] DEBUG Calling 'git fetch origin pull/95/head'
2026-05-05 07:44:41,643 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-05-05 07:44:41,644 [ scc.git] DEBUG * branch refs/pull/95/head -> FETCH_HEAD
2026-05-05 07:44:41,647 [ scc.git] DEBUG ## Unique users: []
2026-05-05 07:44:41,648 [ scc.git] DEBUG Get sha1 of %s
2026-05-05 07:44:41,648 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:44:41,650 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45ee35acc44a7d119aa20b38b0427efbe5405322'
2026-05-05 07:44:41,653 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:44:41,655 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (mapr extension of webclient) 45ee35acc44a7d119aa20b38b0427efbe5405322'
2026-05-05 07:44:41,662 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-05-05 07:44:41,665 [ scc.git] DEBUG .../templates/webclient/base/base_container.html | 182 +++++++++++++
2026-05-05 07:44:41,665 [ scc.git] DEBUG .../data/includes/right_plugin.general.js.html | 290 ---------------------
2026-05-05 07:44:41,665 [ scc.git] DEBUG requirements.txt | 2 +-
2026-05-05 07:44:41,665 [ scc.git] DEBUG 3 files changed, 183 insertions(+), 291 deletions(-)
2026-05-05 07:44:41,666 [ scc.git] DEBUG create mode 100644 omero_mapr/templates/webclient/base/base_container.html
2026-05-05 07:44:41,666 [ scc.git] DEBUG delete mode 100644 omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html
2026-05-05 07:44:41,852 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-05 07:44:41,852 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2026-05-05 07:44:41,855 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:44:41,857 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2026-05-05 07:44:41,865 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-05-05 07:44:41,868 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-05-05 07:44:41,868 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-05-05 07:44:42,296 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-05 07:44:42,296 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-05-05 07:44:42,299 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:44:42,302 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 95 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-05-05 07:44:42,363 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml
2026-05-05 07:44:42,363 [ scc.git] DEBUG CONFLICT (content): Merge conflict in .github/workflows/publish_pypi.yml
2026-05-05 07:44:42,363 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-05-05 07:44:42,364 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-05-05 07:44:42,366 [ scc.git] DEBUG Calling 'git reset --hard 5cc9c9dec7342fc2ce91923b0b5d3f92a1d9e7e4'
2026-05-05 07:44:42,370 [ scc.git] DEBUG HEAD is now at 5cc9c9d merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI)
2026-05-05 07:44:42,757 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-05 07:44:42,758 [ scc.git] DEBUG Calling 'git merge-base 0a557da89145e65db313c1721a26cb43e490dd8a 38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-05-05 07:44:42,760 [ scc.git] DEBUG Calling 'git diff --name-only 0a557da89145e65db313c1721a26cb43e490dd8a..0a557da89145e65db313c1721a26cb43e490dd8a'
2026-05-05 07:44:42,762 [ scc.git] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PR. Removed from build [OMERO-plugins-push#134](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/134/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/134/consoleText) for more details.
Possible conflicts:
- PR #94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
- .github/workflows/publish_pypi.yml
--conflicts
2026-05-05 07:44:42,764 [ scc.config] DEBUG Found github.token
2026-05-05 07:44:42,764 [ scc.git] DEBUG Not adding comment to issue #95, already --conflicts.
2026-05-05 07:44:42,764 [ scc.git] DEBUG Calling 'git submodule update'
2026-05-05 07:44:42,802 [ scc.git] DEBUG Get sha1 of %s
2026-05-05 07:44:42,802 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:44:42,804 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-05-05 07:44:42,840 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-05-05 07:44:42,843 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa3ad5c5490> has no local changes
2026-05-05 07:44:42,843 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#134 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/134/)'
2026-05-05 07:44:42,849 [ scc.git] DEBUG [detached HEAD 19cb932] merge master -Dorg -Ssuccess-only
2026-05-05 07:44:42,849 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-05 07:44:42,849 [ scc.repo] DEBUG ## PRs found:
2026-05-05 07:44:43,403 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None
2026-05-05 07:44:43,920 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/92 HTTP/1.1" 200 None
2026-05-05 07:44:44,428 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/92/comments HTTP/1.1" 200 None
2026-05-05 07:44:45,092 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f?page=1 HTTP/1.1" 200 None
2026-05-05 07:44:45,607 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-05-05 07:44:46,086 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f?page=1 HTTP/1.1" 200 None
2026-05-05 07:44:46,554 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/64d33da6022f537d572d4f69a5cec86377b6e78f?per_page=1 HTTP/1.1" 200 2
2026-05-05 07:44:46,555 [ scc.repo] DEBUG - PR 92 dominikl 'add resolve_rois to projectwrapper'
2026-05-05 07:44:47,092 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None
2026-05-05 07:44:47,662 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None
2026-05-05 07:44:48,375 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7?page=1 HTTP/1.1" 200 None
2026-05-05 07:44:48,882 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-05-05 07:44:49,419 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7?page=1 HTTP/1.1" 200 None
2026-05-05 07:44:49,892 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2
2026-05-05 07:44:49,893 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2026-05-05 07:44:50,402 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None
2026-05-05 07:44:50,930 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None
2026-05-05 07:44:51,486 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102?page=1 HTTP/1.1" 200 None
2026-05-05 07:44:52,025 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-05-05 07:44:52,521 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102?page=1 HTTP/1.1" 200 None
2026-05-05 07:44:52,993 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2026-05-05 07:44:52,993 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2026-05-05 07:44:52,993 [ scc.repo] DEBUG ## Branches found:
2026-05-05 07:44:52,993 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2026-05-05 07:44:52,994 [ scc.git] DEBUG Get sha1 of %s
2026-05-05 07:44:52,994 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:44:52,997 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-05-05 07:44:52,999 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-05-05 07:44:52,999 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-05-05 07:44:53,002 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-05-05 07:44:53,010 [ scc.git] DEBUG Updating 3cd120c..55060a2
2026-05-05 07:44:53,793 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2026-05-05 07:44:53,869 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2026-05-05 07:44:54,345 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-05-05 07:44:54,345 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2026-05-05 07:44:54,350 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2026-05-05 07:44:54,928 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-05-05 07:44:54,928 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2026-05-05 07:44:54,933 [ scc.git] DEBUG Calling 'git fetch origin pull/92/head'
2026-05-05 07:44:55,285 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-05-05 07:44:55,285 [ scc.git] DEBUG * branch refs/pull/92/head -> FETCH_HEAD
2026-05-05 07:44:55,290 [ scc.git] DEBUG ## Unique users: []
2026-05-05 07:44:55,290 [ scc.git] DEBUG Get sha1 of %s
2026-05-05 07:44:55,290 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:44:55,293 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-05-05 07:44:55,296 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:44:55,298 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-05-05 07:44:55,312 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2026-05-05 07:44:55,312 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2026-05-05 07:44:55,312 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2026-05-05 07:44:55,312 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2026-05-05 07:44:55,312 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-05-05 07:44:55,313 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-05-05 07:44:55,315 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2026-05-05 07:44:55,320 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2026-05-05 07:44:55,501 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-05 07:44:55,501 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-05-05 07:44:55,506 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501'
2026-05-05 07:44:55,508 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#134](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/134/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/134/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/populate.py
- src/omero_metadata/cli.py
--conflicts
2026-05-05 07:44:55,510 [ scc.config] DEBUG Found github.token
2026-05-05 07:44:55,510 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2026-05-05 07:44:55,510 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2026-05-05 07:44:55,514 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:44:55,516 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2026-05-05 07:44:55,532 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2026-05-05 07:44:55,532 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2026-05-05 07:44:55,532 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2026-05-05 07:44:55,533 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-05-05 07:44:55,533 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-05-05 07:44:55,535 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501'
2026-05-05 07:44:55,540 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action
2026-05-05 07:44:55,944 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-05 07:44:55,944 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7'
2026-05-05 07:44:55,948 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501'
2026-05-05 07:44:55,950 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#134](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/134/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/134/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2026-05-05 07:44:55,952 [ scc.config] DEBUG Found github.token
2026-05-05 07:44:55,952 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2026-05-05 07:44:55,952 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...64d33da6022f537d572d4f69a5cec86377b6e78f'
2026-05-05 07:44:55,954 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:44:55,956 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 92 (add resolve_rois to projectwrapper) 64d33da6022f537d572d4f69a5cec86377b6e78f'
2026-05-05 07:44:55,966 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-05-05 07:44:55,969 [ scc.git] DEBUG src/omero_metadata/populate.py | 55 +++++++++++++++++++++++++++++++++++++++++-
2026-05-05 07:44:55,969 [ scc.git] DEBUG 1 file changed, 54 insertions(+), 1 deletion(-)
2026-05-05 07:44:56,381 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-05 07:44:56,382 [ scc.git] DEBUG Calling 'git submodule update'
2026-05-05 07:44:56,419 [ scc.git] DEBUG Get sha1 of %s
2026-05-05 07:44:56,419 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:44:56,421 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-05-05 07:44:56,457 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-05-05 07:44:56,461 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa3ad5e0f50> has no local changes
2026-05-05 07:44:56,461 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 92 dominikl 'add resolve_rois to projectwrapper'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#134 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/134/)'
2026-05-05 07:44:56,467 [ scc.git] DEBUG [detached HEAD 644f3a9] merge master -Dorg -Ssuccess-only
2026-05-05 07:44:56,468 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-05 07:44:56,468 [ scc.repo] DEBUG ## PRs found:
2026-05-05 07:44:57,000 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2026-05-05 07:44:57,486 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2026-05-05 07:44:58,101 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0?page=1 HTTP/1.1" 200 None
2026-05-05 07:44:58,654 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-05-05 07:44:59,236 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-05-05 07:44:59,730 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0?page=1 HTTP/1.1" 200 None
2026-05-05 07:45:00,206 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2026-05-05 07:45:00,206 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-05-05 07:45:00,728 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2026-05-05 07:45:00,729 [ scc.repo] DEBUG # ... Include label: dependencies
2026-05-05 07:45:01,372 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80?page=1 HTTP/1.1" 200 None
2026-05-05 07:45:01,914 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-05-05 07:45:02,416 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80?page=1 HTTP/1.1" 200 None
2026-05-05 07:45:02,885 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2026-05-05 07:45:02,886 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2026-05-05 07:45:03,377 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2026-05-05 07:45:03,378 [ scc.repo] DEBUG # ... Include label: dependencies
2026-05-05 07:45:04,041 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0?page=1 HTTP/1.1" 200 None
2026-05-05 07:45:04,566 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-05-05 07:45:05,072 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0?page=1 HTTP/1.1" 200 None
2026-05-05 07:45:05,543 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2026-05-05 07:45:05,544 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2026-05-05 07:45:06,071 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2026-05-05 07:45:06,595 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2026-05-05 07:45:07,135 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2026-05-05 07:45:07,642 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2026-05-05 07:45:08,159 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2026-05-05 07:45:08,667 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2026-05-05 07:45:09,192 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2026-05-05 07:45:09,194 [ scc.repo] DEBUG ## Branches found:
2026-05-05 07:45:09,194 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2026-05-05 07:45:09,194 [ scc.git] DEBUG Get sha1 of %s
2026-05-05 07:45:09,194 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:45:09,197 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-05-05 07:45:09,200 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-05-05 07:45:09,200 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-05-05 07:45:09,203 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-05-05 07:45:09,205 [ scc.git] DEBUG Already up to date.
2026-05-05 07:45:09,206 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2026-05-05 07:45:09,552 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-05-05 07:45:09,552 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2026-05-05 07:45:09,557 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2026-05-05 07:45:09,844 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-05-05 07:45:09,844 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2026-05-05 07:45:09,848 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2026-05-05 07:45:10,201 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-05-05 07:45:10,201 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2026-05-05 07:45:10,206 [ scc.git] DEBUG ## Unique users: []
2026-05-05 07:45:10,206 [ scc.git] DEBUG Get sha1 of %s
2026-05-05 07:45:10,206 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:45:10,208 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2026-05-05 07:45:10,211 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:45:10,213 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2026-05-05 07:45:10,220 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-05-05 07:45:10,223 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2026-05-05 07:45:10,223 [ scc.git] DEBUG package.json | 2 +-
2026-05-05 07:45:10,223 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2026-05-05 07:45:10,574 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-05 07:45:10,575 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2026-05-05 07:45:10,578 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:45:10,580 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2026-05-05 07:45:10,590 [ scc.git] DEBUG Auto-merging package-lock.json
2026-05-05 07:45:10,590 [ scc.git] DEBUG Auto-merging package.json
2026-05-05 07:45:10,590 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-05-05 07:45:10,594 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2026-05-05 07:45:10,594 [ scc.git] DEBUG package.json | 2 +-
2026-05-05 07:45:10,594 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2026-05-05 07:45:11,010 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-05 07:45:11,011 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2026-05-05 07:45:11,014 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:45:11,017 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2026-05-05 07:45:11,024 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-05-05 07:45:11,027 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-05-05 07:45:11,027 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-05-05 07:45:11,458 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-05 07:45:11,459 [ scc.git] DEBUG Calling 'git submodule update'
2026-05-05 07:45:11,498 [ scc.git] DEBUG Get sha1 of %s
2026-05-05 07:45:11,498 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:45:11,500 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-05-05 07:45:11,537 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-05-05 07:45:11,540 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa3ad606490> has no local changes
2026-05-05 07:45:11,540 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#134 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/134/)'
2026-05-05 07:45:11,547 [ scc.git] DEBUG [detached HEAD b79a388] merge master -Dorg -Ssuccess-only
2026-05-05 07:45:11,547 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-05 07:45:11,547 [ scc.repo] DEBUG ## PRs found:
2026-05-05 07:45:11,995 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None
2026-05-05 07:45:12,536 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/16 HTTP/1.1" 200 None
2026-05-05 07:45:12,537 [ scc.repo] DEBUG # ... Include label: dependencies
2026-05-05 07:45:13,240 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e?page=1 HTTP/1.1" 200 None
2026-05-05 07:45:13,813 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-05-05 07:45:14,390 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-05-05 07:45:14,906 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e?page=1 HTTP/1.1" 200 None
2026-05-05 07:45:15,398 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/5381b9f25e1666d81d236039a1317276291e9b2e?per_page=1 HTTP/1.1" 200 2
2026-05-05 07:45:15,398 [ scc.repo] DEBUG - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-05-05 07:45:15,398 [ scc.repo] DEBUG ## Branches found:
2026-05-05 07:45:15,398 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2026-05-05 07:45:15,398 [ scc.git] DEBUG Get sha1 of %s
2026-05-05 07:45:15,398 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:45:15,401 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-05-05 07:45:15,404 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-05-05 07:45:15,404 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-05-05 07:45:15,406 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-05-05 07:45:15,409 [ scc.git] DEBUG Already up to date.
2026-05-05 07:45:15,409 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head'
2026-05-05 07:45:15,774 [ scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools
2026-05-05 07:45:15,774 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD
2026-05-05 07:45:15,779 [ scc.git] DEBUG ## Unique users: []
2026-05-05 07:45:15,779 [ scc.git] DEBUG Get sha1 of %s
2026-05-05 07:45:15,779 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:45:15,782 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5381b9f25e1666d81d236039a1317276291e9b2e'
2026-05-05 07:45:15,784 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:45:15,786 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 5381b9f25e1666d81d236039a1317276291e9b2e'
2026-05-05 07:45:15,792 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-05-05 07:45:15,795 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-05-05 07:45:15,795 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-05-05 07:45:15,997 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-05 07:45:15,997 [ scc.git] DEBUG Calling 'git submodule update'
2026-05-05 07:45:16,035 [ scc.git] DEBUG Get sha1 of %s
2026-05-05 07:45:16,035 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:45:16,037 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-05-05 07:45:16,076 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-05-05 07:45:16,079 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa3ad5ff650> has no local changes
2026-05-05 07:45:16,079 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#134 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/134/)'
2026-05-05 07:45:16,085 [ scc.git] DEBUG [detached HEAD f70beca] merge master -Dorg -Ssuccess-only
2026-05-05 07:45:16,085 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-05 07:45:16,085 [ scc.repo] DEBUG ## PRs found:
2026-05-05 07:45:16,557 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2026-05-05 07:45:17,100 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2026-05-05 07:45:17,101 [ scc.repo] DEBUG ## Branches found:
2026-05-05 07:45:17,101 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2026-05-05 07:45:17,101 [ scc.git] DEBUG Get sha1 of %s
2026-05-05 07:45:17,101 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:45:17,104 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-05-05 07:45:17,106 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-05-05 07:45:17,106 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-05-05 07:45:17,109 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-05-05 07:45:17,117 [ scc.git] DEBUG Updating bdfeb5e..fc9ff96
2026-05-05 07:45:17,911 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls/36 HTTP/1.1" 200 None
2026-05-05 07:45:18,660 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls/35 HTTP/1.1" 200 None
2026-05-05 07:45:18,663 [ scc.git] DEBUG ## Unique users: []
2026-05-05 07:45:18,663 [ scc.git] DEBUG Get sha1 of %s
2026-05-05 07:45:18,663 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:45:18,665 [ scc.git] DEBUG Calling 'git submodule update'
2026-05-05 07:45:18,704 [ scc.git] DEBUG Get sha1 of %s
2026-05-05 07:45:18,704 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:45:18,706 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-05-05 07:45:18,744 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-05-05 07:45:18,747 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa3ad5def90> has no local changes
2026-05-05 07:45:18,747 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Updating bdfeb5e..fc9ff96
Previously merged:
- PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml'
- PR 35 will-moore 'Add roi to array functions'
Generated by OMERO-plugins-push#134 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/134/)'
2026-05-05 07:45:18,753 [ scc.git] DEBUG [detached HEAD 432864e] merge master -Dorg -Ssuccess-only
2026-05-05 07:45:18,753 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-05 07:45:18,753 [ scc.repo] DEBUG ## PRs found:
2026-05-05 07:45:19,329 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2026-05-05 07:45:19,923 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/22 HTTP/1.1" 200 None
2026-05-05 07:45:19,924 [ scc.repo] DEBUG # ... Include label: dependencies
2026-05-05 07:45:20,555 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa?page=1 HTTP/1.1" 200 None
2026-05-05 07:45:21,144 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-05-05 07:45:21,749 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-05-05 07:45:22,275 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa?page=1 HTTP/1.1" 200 None
2026-05-05 07:45:22,756 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/8b27e47a330555e99e9594f0c4b546946f4f98aa?per_page=1 HTTP/1.1" 200 2
2026-05-05 07:45:22,757 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-05-05 07:45:23,262 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2026-05-05 07:45:23,781 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2026-05-05 07:45:24,408 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?page=1 HTTP/1.1" 200 None
2026-05-05 07:45:24,969 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-05-05 07:45:25,464 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?page=1 HTTP/1.1" 200 None
2026-05-05 07:45:25,930 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2026-05-05 07:45:25,931 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2026-05-05 07:45:25,931 [ scc.repo] DEBUG ## Branches found:
2026-05-05 07:45:25,931 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2026-05-05 07:45:25,931 [ scc.git] DEBUG Get sha1 of %s
2026-05-05 07:45:25,931 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:45:25,934 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-05-05 07:45:25,936 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-05-05 07:45:25,936 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-05-05 07:45:25,938 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-05-05 07:45:25,941 [ scc.git] DEBUG Already up to date.
2026-05-05 07:45:25,941 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2026-05-05 07:45:26,432 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2026-05-05 07:45:26,433 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2026-05-05 07:45:26,437 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2026-05-05 07:45:26,784 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2026-05-05 07:45:26,784 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2026-05-05 07:45:26,788 [ scc.git] DEBUG ## Unique users: []
2026-05-05 07:45:26,788 [ scc.git] DEBUG Get sha1 of %s
2026-05-05 07:45:26,788 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:45:26,791 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-05-05 07:45:26,794 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:45:26,796 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-05-05 07:45:26,862 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2026-05-05 07:45:26,863 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2026-05-05 07:45:26,863 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2026-05-05 07:45:26,863 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2026-05-05 07:45:26,863 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2026-05-05 07:45:26,863 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2026-05-05 07:45:26,863 [ scc.git] DEBUG Auto-merging setup.py
2026-05-05 07:45:26,863 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2026-05-05 07:45:26,863 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-05-05 07:45:26,863 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-05-05 07:45:26,866 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2026-05-05 07:45:26,870 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2026-05-05 07:45:27,052 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-05 07:45:27,053 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-05-05 07:45:27,056 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2026-05-05 07:45:27,059 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#134](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/134/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/134/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_signup/views.py
- setup.py
- omero_signup/signup_settings.py
- omero_signup/urls.py
--conflicts
2026-05-05 07:45:27,061 [ scc.config] DEBUG Found github.token
2026-05-05 07:45:27,061 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2026-05-05 07:45:27,061 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8b27e47a330555e99e9594f0c4b546946f4f98aa'
2026-05-05 07:45:27,063 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:45:27,065 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8b27e47a330555e99e9594f0c4b546946f4f98aa'
2026-05-05 07:45:27,072 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-05-05 07:45:27,075 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-05-05 07:45:27,075 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-05-05 07:45:27,490 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-05 07:45:27,491 [ scc.git] DEBUG Calling 'git submodule update'
2026-05-05 07:45:27,528 [ scc.git] DEBUG Get sha1 of %s
2026-05-05 07:45:27,528 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:45:27,530 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-05-05 07:45:27,567 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-05-05 07:45:27,570 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa3ad601750> has no local changes
2026-05-05 07:45:27,570 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#134 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/134/)'
2026-05-05 07:45:27,576 [ scc.git] DEBUG [detached HEAD 33205f0] merge master -Dorg -Ssuccess-only
2026-05-05 07:45:27,576 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-05 07:45:27,576 [ scc.repo] DEBUG ## PRs found:
2026-05-05 07:45:28,079 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2026-05-05 07:45:28,628 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2026-05-05 07:45:29,114 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2026-05-05 07:45:29,619 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74/comments HTTP/1.1" 200 None
2026-05-05 07:45:30,226 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623?page=1 HTTP/1.1" 200 None
2026-05-05 07:45:30,758 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-05-05 07:45:31,264 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623?page=1 HTTP/1.1" 200 None
2026-05-05 07:45:31,729 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/c18c080227e97899382d3464baa7c7885a621623?per_page=1 HTTP/1.1" 200 2
2026-05-05 07:45:31,729 [ scc.repo] DEBUG - PR 74 joshmoore 'Add 'ms' target for ./docker'
2026-05-05 07:45:31,730 [ scc.repo] DEBUG ## Branches found:
2026-05-05 07:45:31,730 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2026-05-05 07:45:31,730 [ scc.git] DEBUG Get sha1 of %s
2026-05-05 07:45:31,730 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:45:31,733 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-05-05 07:45:31,735 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-05-05 07:45:31,735 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-05-05 07:45:31,738 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-05-05 07:45:31,745 [ scc.git] DEBUG Updating cda3ec6..c8a0015
2026-05-05 07:45:32,441 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/84 HTTP/1.1" 200 None
2026-05-05 07:45:33,131 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/82 HTTP/1.1" 200 None
2026-05-05 07:45:33,880 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/81 HTTP/1.1" 200 None
2026-05-05 07:45:33,881 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head'
2026-05-05 07:45:34,296 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2026-05-05 07:45:34,296 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD
2026-05-05 07:45:34,301 [ scc.git] DEBUG ## Unique users: []
2026-05-05 07:45:34,302 [ scc.git] DEBUG Get sha1 of %s
2026-05-05 07:45:34,302 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:45:34,304 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c18c080227e97899382d3464baa7c7885a621623'
2026-05-05 07:45:34,307 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:45:34,309 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (Add 'ms' target for ./docker) c18c080227e97899382d3464baa7c7885a621623'
2026-05-05 07:45:34,317 [ scc.git] DEBUG Auto-merging .github/workflows/main.yml
2026-05-05 07:45:34,318 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-05-05 07:45:34,321 [ scc.git] DEBUG .github/workflows/main.yml | 8 ++++++++
2026-05-05 07:45:34,321 [ scc.git] DEBUG docker | 22 ++++++++++++++++++++++
2026-05-05 07:45:34,321 [ scc.git] DEBUG ms/compose.yml | 11 +++++++++++
2026-05-05 07:45:34,321 [ scc.git] DEBUG ms/example/Dockerfile | 13 +++++++++++++
2026-05-05 07:45:34,321 [ scc.git] DEBUG ms/test | 2 ++
2026-05-05 07:45:34,321 [ scc.git] DEBUG 5 files changed, 56 insertions(+)
2026-05-05 07:45:34,321 [ scc.git] DEBUG create mode 100644 ms/compose.yml
2026-05-05 07:45:34,322 [ scc.git] DEBUG create mode 100644 ms/example/Dockerfile
2026-05-05 07:45:34,322 [ scc.git] DEBUG create mode 100755 ms/test
2026-05-05 07:45:34,514 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-05 07:45:34,515 [ scc.git] DEBUG Calling 'git submodule update'
2026-05-05 07:45:34,554 [ scc.git] DEBUG Get sha1 of %s
2026-05-05 07:45:34,554 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:45:34,556 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-05-05 07:45:34,592 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-05-05 07:45:34,596 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa3ad61b3d0> has no local changes
2026-05-05 07:45:34,596 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Merged PRs:
- PR 74 joshmoore 'Add 'ms' target for ./docker'
Generated by OMERO-plugins-push#134 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/134/)'
2026-05-05 07:45:34,602 [ scc.git] DEBUG [detached HEAD 91007d3] merge master -Dorg -Ssuccess-only
2026-05-05 07:45:34,602 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-05 07:45:34,602 [ scc.repo] DEBUG ## PRs found:
2026-05-05 07:45:35,073 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 None
2026-05-05 07:45:35,609 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/issues/14 HTTP/1.1" 200 None
2026-05-05 07:45:35,610 [ scc.repo] DEBUG # ... Include label: dependencies
2026-05-05 07:45:36,263 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?page=1 HTTP/1.1" 200 None
2026-05-05 07:45:36,831 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-05-05 07:45:37,370 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-05-05 07:45:37,864 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?page=1 HTTP/1.1" 200 None
2026-05-05 07:45:38,481 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/statuses/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?per_page=1 HTTP/1.1" 200 2
2026-05-05 07:45:38,482 [ scc.repo] DEBUG - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-05-05 07:45:38,482 [ scc.repo] DEBUG ## Branches found:
2026-05-05 07:45:38,482 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2026-05-05 07:45:38,482 [ scc.git] DEBUG Get sha1 of %s
2026-05-05 07:45:38,482 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:45:38,485 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-05-05 07:45:38,487 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-05-05 07:45:38,487 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-05-05 07:45:38,489 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-05-05 07:45:38,492 [ scc.git] DEBUG Already up to date.
2026-05-05 07:45:38,493 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2026-05-05 07:45:38,855 [ scc.git] DEBUG From https://github.com/ome/omero-upload
2026-05-05 07:45:38,855 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2026-05-05 07:45:38,860 [ scc.git] DEBUG ## Unique users: []
2026-05-05 07:45:38,860 [ scc.git] DEBUG Get sha1 of %s
2026-05-05 07:45:38,860 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:45:38,862 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2026-05-05 07:45:38,865 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:45:38,867 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2026-05-05 07:45:38,873 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-05-05 07:45:38,876 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-05-05 07:45:38,876 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-05-05 07:45:39,073 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-05 07:45:39,074 [ scc.git] DEBUG Calling 'git submodule update'
2026-05-05 07:45:39,112 [ scc.git] DEBUG Get sha1 of %s
2026-05-05 07:45:39,112 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:45:39,114 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-05-05 07:45:39,152 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-05-05 07:45:39,155 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa3ad631290> has no local changes
2026-05-05 07:45:39,155 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#134 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/134/)'
2026-05-05 07:45:39,161 [ scc.git] DEBUG [detached HEAD 02b2c4a] merge master -Dorg -Ssuccess-only
2026-05-05 07:45:39,161 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-05 07:45:39,161 [ scc.repo] DEBUG ## PRs found:
2026-05-05 07:45:39,642 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 None
2026-05-05 07:45:40,210 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/issues/22 HTTP/1.1" 200 None
2026-05-05 07:45:40,210 [ scc.repo] DEBUG # ... Include label: dependencies
2026-05-05 07:45:40,891 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902?page=1 HTTP/1.1" 200 None
2026-05-05 07:45:41,454 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-05-05 07:45:42,005 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-05-05 07:45:42,534 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902?page=1 HTTP/1.1" 200 None
2026-05-05 07:45:42,991 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/statuses/2ee819462af52bf2878fadf06d6ebdbafb8f1902?per_page=1 HTTP/1.1" 200 2
2026-05-05 07:45:42,991 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-05-05 07:45:42,991 [ scc.repo] DEBUG ## Branches found:
2026-05-05 07:45:42,991 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2026-05-05 07:45:42,991 [ scc.git] DEBUG Get sha1 of %s
2026-05-05 07:45:42,992 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:45:42,994 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-05-05 07:45:42,996 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-05-05 07:45:42,997 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-05-05 07:45:42,999 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-05-05 07:45:43,006 [ scc.git] DEBUG Updating deab817..160d894
2026-05-05 07:45:43,769 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2026-05-05 07:45:43,770 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2026-05-05 07:45:44,099 [ scc.git] DEBUG From https://github.com/ome/omero-virtual-microscope
2026-05-05 07:45:44,099 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2026-05-05 07:45:44,103 [ scc.git] DEBUG ## Unique users: []
2026-05-05 07:45:44,103 [ scc.git] DEBUG Get sha1 of %s
2026-05-05 07:45:44,103 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:45:44,105 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2026-05-05 07:45:44,108 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:45:44,110 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2026-05-05 07:45:44,116 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-05-05 07:45:44,119 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-05-05 07:45:44,119 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-05-05 07:45:44,311 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-05 07:45:44,311 [ scc.git] DEBUG Calling 'git submodule update'
2026-05-05 07:45:44,350 [ scc.git] DEBUG Get sha1 of %s
2026-05-05 07:45:44,350 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:45:44,352 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-05-05 07:45:44,389 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-05-05 07:45:44,392 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa3ae824050> has no local changes
2026-05-05 07:45:44,392 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#134 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/134/)'
2026-05-05 07:45:44,398 [ scc.git] DEBUG [detached HEAD 8de9c73] merge master -Dorg -Ssuccess-only
2026-05-05 07:45:44,398 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-05 07:45:44,399 [ scc.git] INFO Overriding base-branch from master to main
2026-05-05 07:45:44,399 [ scc.repo] DEBUG ## PRs found:
2026-05-05 07:45:44,890 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2026-05-05 07:45:45,415 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None
2026-05-05 07:45:45,939 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21/comments HTTP/1.1" 200 None
2026-05-05 07:45:46,539 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc?page=1 HTTP/1.1" 200 None
2026-05-05 07:45:47,085 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-05-05 07:45:47,633 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-05-05 07:45:48,135 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc?page=1 HTTP/1.1" 200 None
2026-05-05 07:45:48,616 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/d07067753650282c9e8cdbbeae37897b7ed0d4cc?per_page=1 HTTP/1.1" 200 2
2026-05-05 07:45:48,617 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import'
2026-05-05 07:45:49,139 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2026-05-05 07:45:49,646 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2026-05-05 07:45:50,164 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2026-05-05 07:45:50,744 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8?page=1 HTTP/1.1" 200 None
2026-05-05 07:45:51,262 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-05-05 07:45:51,748 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8?page=1 HTTP/1.1" 200 None
2026-05-05 07:45:52,210 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2026-05-05 07:45:52,211 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2026-05-05 07:45:52,211 [ scc.repo] DEBUG ## Branches found:
2026-05-05 07:45:52,211 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-05-05 07:45:52,211 [ scc.git] DEBUG Get sha1 of %s
2026-05-05 07:45:52,211 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:45:52,214 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2026-05-05 07:45:52,216 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-05-05 07:45:52,216 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2026-05-05 07:45:52,219 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2026-05-05 07:45:52,225 [ scc.git] DEBUG Updating 8f3c313..4e1e685
2026-05-05 07:45:53,004 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/23 HTTP/1.1" 200 None
2026-05-05 07:45:53,749 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/20 HTTP/1.1" 200 None
2026-05-05 07:45:53,750 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2026-05-05 07:45:54,116 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2026-05-05 07:45:54,116 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2026-05-05 07:45:54,121 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head'
2026-05-05 07:45:54,803 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2026-05-05 07:45:54,804 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD
2026-05-05 07:45:54,808 [ scc.git] DEBUG ## Unique users: []
2026-05-05 07:45:54,808 [ scc.git] DEBUG Get sha1 of %s
2026-05-05 07:45:54,808 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:45:54,810 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-05-05 07:45:54,813 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:45:54,815 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-05-05 07:45:54,833 [ scc.git] DEBUG Auto-merging README.rst
2026-05-05 07:45:54,833 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2026-05-05 07:45:54,833 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2026-05-05 07:45:54,833 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2026-05-05 07:45:54,833 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-05-05 07:45:54,833 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-05-05 07:45:54,836 [ scc.git] DEBUG Calling 'git reset --hard 4e1e685dff22136abfd2626f6fd6eaf985aba368'
2026-05-05 07:45:54,839 [ scc.git] DEBUG HEAD is now at 4e1e685 Merge pull request #23 from lubianat/patch-1
2026-05-05 07:45:55,041 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-05 07:45:55,042 [ scc.git] DEBUG Calling 'git merge-base 4e1e685dff22136abfd2626f6fd6eaf985aba368 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-05-05 07:45:55,045 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..4e1e685dff22136abfd2626f6fd6eaf985aba368'
2026-05-05 07:45:55,047 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#134](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/134/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/134/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2026-05-05 07:45:55,050 [ scc.config] DEBUG Found github.token
2026-05-05 07:45:55,050 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2026-05-05 07:45:55,050 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2026-05-05 07:45:55,052 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:45:55,054 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2026-05-05 07:45:55,063 [ scc.git] DEBUG Auto-merging README.rst
2026-05-05 07:45:55,063 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2026-05-05 07:45:55,064 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-05-05 07:45:55,067 [ scc.git] DEBUG README.rst | 3 +
2026-05-05 07:45:55,067 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++
2026-05-05 07:45:55,067 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 +
2026-05-05 07:45:55,067 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++-
2026-05-05 07:45:55,067 [ scc.git] DEBUG setup.py | 5 +-
2026-05-05 07:45:55,067 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-)
2026-05-05 07:45:55,067 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html
2026-05-05 07:45:55,484 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-05 07:45:55,485 [ scc.git] DEBUG Calling 'git submodule update'
2026-05-05 07:45:55,523 [ scc.git] DEBUG Get sha1 of %s
2026-05-05 07:45:55,524 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:45:55,526 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-05-05 07:45:55,563 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-05-05 07:45:55,566 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa3ad65bed0> has no local changes
2026-05-05 07:45:55,566 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#134 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/134/)'
2026-05-05 07:45:55,573 [ scc.git] DEBUG [detached HEAD 39de5ad] merge master -Dorg -Ssuccess-only
2026-05-05 07:45:55,573 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-05 07:45:55,573 [ scc.repo] DEBUG ## PRs found:
2026-05-05 07:45:56,066 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 None
2026-05-05 07:45:56,590 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/issues/25 HTTP/1.1" 200 None
2026-05-05 07:45:56,591 [ scc.repo] DEBUG # ... Include label: dependencies
2026-05-05 07:45:57,285 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9?page=1 HTTP/1.1" 200 None
2026-05-05 07:45:57,865 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-05-05 07:45:58,823 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-05-05 07:45:59,327 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9?page=1 HTTP/1.1" 200 None
2026-05-05 07:45:59,786 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/statuses/c73bedb717b9ecce0af666245d3486aa5a2dafe9?per_page=1 HTTP/1.1" 200 2
2026-05-05 07:45:59,787 [ scc.repo] DEBUG - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-05-05 07:45:59,787 [ scc.repo] DEBUG ## Branches found:
2026-05-05 07:45:59,787 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-05-05 07:45:59,787 [ scc.git] DEBUG Get sha1 of %s
2026-05-05 07:45:59,787 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:45:59,790 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-05-05 07:45:59,792 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-05-05 07:45:59,792 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-05-05 07:45:59,795 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-05-05 07:45:59,798 [ scc.git] DEBUG Already up to date.
2026-05-05 07:45:59,798 [ scc.git] DEBUG Calling 'git fetch origin pull/25/head'
2026-05-05 07:46:00,192 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-weberror
2026-05-05 07:46:00,192 [ scc.git] DEBUG * branch refs/pull/25/head -> FETCH_HEAD
2026-05-05 07:46:00,196 [ scc.git] DEBUG ## Unique users: []
2026-05-05 07:46:00,197 [ scc.git] DEBUG Get sha1 of %s
2026-05-05 07:46:00,197 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:46:00,199 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2026-05-05 07:46:00,201 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:46:00,203 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2026-05-05 07:46:00,209 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-05-05 07:46:00,211 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-05-05 07:46:00,212 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-05-05 07:46:00,407 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-05 07:46:00,408 [ scc.git] DEBUG Calling 'git submodule update'
2026-05-05 07:46:00,447 [ scc.git] DEBUG Get sha1 of %s
2026-05-05 07:46:00,447 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:46:00,449 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-05-05 07:46:00,487 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-05-05 07:46:00,490 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa3ad680d50> has no local changes
2026-05-05 07:46:00,490 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#134 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/134/)'
2026-05-05 07:46:00,496 [ scc.git] DEBUG [detached HEAD 8cd4312] merge master -Dorg -Ssuccess-only
2026-05-05 07:46:00,496 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-05 07:46:00,496 [ scc.repo] DEBUG ## PRs found:
2026-05-05 07:46:00,958 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 None
2026-05-05 07:46:01,541 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/issues/37 HTTP/1.1" 200 None
2026-05-05 07:46:01,541 [ scc.repo] DEBUG # ... Include label: dependencies
2026-05-05 07:46:02,179 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478?page=1 HTTP/1.1" 200 None
2026-05-05 07:46:02,757 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-05-05 07:46:03,452 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-05-05 07:46:03,969 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478?page=1 HTTP/1.1" 200 None
2026-05-05 07:46:04,469 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/statuses/8cf5f7e65ae8e945b134e41e77bc13a785aff478?per_page=1 HTTP/1.1" 200 2
2026-05-05 07:46:04,470 [ scc.repo] DEBUG - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-05-05 07:46:04,470 [ scc.repo] DEBUG ## Branches found:
2026-05-05 07:46:04,470 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-05-05 07:46:04,470 [ scc.git] DEBUG Get sha1 of %s
2026-05-05 07:46:04,470 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:46:04,473 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-05-05 07:46:04,475 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-05-05 07:46:04,475 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-05-05 07:46:04,478 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-05-05 07:46:04,481 [ scc.git] DEBUG Already up to date.
2026-05-05 07:46:04,481 [ scc.git] DEBUG Calling 'git fetch origin pull/37/head'
2026-05-05 07:46:04,840 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-webtest
2026-05-05 07:46:04,841 [ scc.git] DEBUG * branch refs/pull/37/head -> FETCH_HEAD
2026-05-05 07:46:04,845 [ scc.git] DEBUG ## Unique users: []
2026-05-05 07:46:04,846 [ scc.git] DEBUG Get sha1 of %s
2026-05-05 07:46:04,846 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:46:04,848 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2026-05-05 07:46:04,850 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:46:04,853 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 37 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2026-05-05 07:46:04,859 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-05-05 07:46:04,862 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-05-05 07:46:04,862 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-05-05 07:46:05,065 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-05 07:46:05,066 [ scc.git] DEBUG Calling 'git submodule update'
2026-05-05 07:46:05,103 [ scc.git] DEBUG Get sha1 of %s
2026-05-05 07:46:05,103 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:46:05,106 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-05-05 07:46:05,142 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-05-05 07:46:05,145 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa3ad6181d0> has no local changes
2026-05-05 07:46:05,145 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#134 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/134/)'
2026-05-05 07:46:05,150 [ scc.git] DEBUG [detached HEAD 69e9674] merge master -Dorg -Ssuccess-only
2026-05-05 07:46:05,151 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-05 07:46:05,151 [ scc.repo] DEBUG ## PRs found:
2026-05-05 07:46:05,542 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 2
2026-05-05 07:46:05,542 [ scc.repo] DEBUG ## Branches found:
2026-05-05 07:46:05,542 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-05-05 07:46:05,542 [ scc.git] DEBUG Get sha1 of %s
2026-05-05 07:46:05,542 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:46:05,545 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-05-05 07:46:05,547 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-05-05 07:46:05,547 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-05-05 07:46:05,551 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-05-05 07:46:05,554 [ scc.git] DEBUG Already up to date.
2026-05-05 07:46:05,554 [ scc.git] DEBUG ## Unique users: []
2026-05-05 07:46:05,554 [ scc.git] DEBUG Get sha1 of %s
2026-05-05 07:46:05,554 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:46:05,556 [ scc.git] DEBUG Calling 'git submodule update'
2026-05-05 07:46:05,592 [ scc.git] DEBUG Get sha1 of %s
2026-05-05 07:46:05,592 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:46:05,595 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-05-05 07:46:05,629 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-05-05 07:46:05,632 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa3ad67b850> has no local changes
2026-05-05 07:46:05,632 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Generated by OMERO-plugins-push#134 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/134/)'
2026-05-05 07:46:05,638 [ scc.git] DEBUG [detached HEAD 92767bc] merge master -Dorg -Ssuccess-only
2026-05-05 07:46:05,638 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-05 07:46:05,638 [ scc.git] INFO Overriding base-branch from master to develop
2026-05-05 07:46:05,638 [ scc.repo] DEBUG ## PRs found:
2026-05-05 07:46:06,011 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 2
2026-05-05 07:46:06,011 [ scc.repo] DEBUG ## Branches found:
2026-05-05 07:46:06,011 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-05-05 07:46:06,011 [ scc.git] DEBUG Get sha1 of %s
2026-05-05 07:46:06,011 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:46:06,014 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2026-05-05 07:46:06,016 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-05-05 07:46:06,016 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2026-05-05 07:46:06,018 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2026-05-05 07:46:06,030 [ scc.git] DEBUG Updating 4b4c755..5b4d768
2026-05-05 07:46:06,681 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/231 HTTP/1.1" 200 None
2026-05-05 07:46:07,382 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/229 HTTP/1.1" 200 None
2026-05-05 07:46:08,163 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/223 HTTP/1.1" 200 None
2026-05-05 07:46:08,854 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/230 HTTP/1.1" 200 None
2026-05-05 07:46:09,571 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/228 HTTP/1.1" 200 None
2026-05-05 07:46:10,348 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2026-05-05 07:46:11,054 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2026-05-05 07:46:11,055 [ scc.git] DEBUG ## Unique users: []
2026-05-05 07:46:11,055 [ scc.git] DEBUG Get sha1 of %s
2026-05-05 07:46:11,055 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:46:11,058 [ scc.git] DEBUG Calling 'git submodule update'
2026-05-05 07:46:11,097 [ scc.git] DEBUG Get sha1 of %s
2026-05-05 07:46:11,097 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-05-05 07:46:11,099 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-05-05 07:46:11,138 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-05-05 07:46:11,142 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa3ac4a4f90> has no local changes
2026-05-05 07:46:11,142 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Updating 4b4c755..5b4d768
Previously merged:
- PR 231 jburel 'Create Release '
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Generated by OMERO-plugins-push#134 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/134/)'
2026-05-05 07:46:11,148 [ scc.git] DEBUG [detached HEAD bb6c63c] merge master -Dorg -Ssuccess-only
2026-05-05 07:46:11,148 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-05 07:46:11,148 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-05-05 07:46:11,218 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2026-05-05 07:46:11,489 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-05 07:46:11,494 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2026-05-05 07:46:11,495 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2026-05-05 07:46:11,944 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-05 07:46:11,948 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2026-05-05 07:46:11,950 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2026-05-05 07:46:12,389 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-05 07:46:12,393 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2026-05-05 07:46:12,394 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2026-05-05 07:46:12,831 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-05 07:46:12,837 [ scc.config] DEBUG Found submodule.omero-figure.url
2026-05-05 07:46:13,274 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-05 07:46:13,279 [ scc.config] DEBUG Found submodule.omero-figure.branch
2026-05-05 07:46:13,280 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2026-05-05 07:46:13,721 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-05 07:46:13,725 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2026-05-05 07:46:13,727 [ scc.config] DEBUG Found submodule.omero-gallery.url
2026-05-05 07:46:14,197 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-05 07:46:14,202 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2026-05-05 07:46:14,204 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2026-05-05 07:46:14,652 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-05 07:46:14,658 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2026-05-05 07:46:14,660 [ scc.config] DEBUG Found submodule.omero-mapr.url
2026-05-05 07:46:15,094 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-05 07:46:15,099 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2026-05-05 07:46:15,101 [ scc.config] DEBUG Found submodule.omero-metadata.url
2026-05-05 07:46:15,532 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-05 07:46:15,537 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2026-05-05 07:46:15,539 [ scc.config] DEBUG Found submodule.omero-parade.url
2026-05-05 07:46:15,986 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-05 07:46:15,990 [ scc.config] DEBUG Found submodule.omero-parade.branch
2026-05-05 07:46:15,992 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2026-05-05 07:46:16,582 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-05 07:46:16,586 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2026-05-05 07:46:16,588 [ scc.config] DEBUG Found submodule.omero-rois.url
2026-05-05 07:46:17,049 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-05 07:46:17,055 [ scc.config] DEBUG Found submodule.omero-signup.url
2026-05-05 07:46:17,505 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-05 07:46:17,510 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2026-05-05 07:46:17,958 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-05 07:46:17,962 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2026-05-05 07:46:17,964 [ scc.config] DEBUG Found submodule.omero-upload.url
2026-05-05 07:46:18,393 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-05 07:46:18,399 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2026-05-05 07:46:18,876 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-05 07:46:18,883 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2026-05-05 07:46:19,323 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-05 07:46:19,327 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2026-05-05 07:46:19,329 [ scc.config] DEBUG Found submodule.omero-weberror.url
2026-05-05 07:46:19,780 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-05 07:46:19,788 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2026-05-05 07:46:19,790 [ scc.config] DEBUG Found submodule.omero-webtest.url
2026-05-05 07:46:20,229 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-05 07:46:20,233 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2026-05-05 07:46:20,235 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2026-05-05 07:46:20,678 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-05 07:46:20,683 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2026-05-05 07:46:20,684 [ scc.config] DEBUG Found submodule.scripts.url
2026-05-05 07:46:21,121 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-05-05 07:46:21,125 [ scc.config] DEBUG Found submodule.scripts.branch
2026-05-05 07:46:21,125 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-05-05 07:46:21,199 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa3ae6c7090> has local changes
2026-05-05 07:46:21,199 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Merged PRs:
- PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-cli-render
Excluded PRs:
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Updating ce6e13c..68b7303
Previously merged:
- PR 74 jburel 'Replace manual changelog by automated GH release step'
- PR 75 jburel 'Sort the new channels to ensure settings are set'
- PR 71 dominikl 'Escape slash character in image names'
- PR 69 dominikl 'Fix help text for impo/export commands'
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 194 will-moore 'Update uk1s3.embassy links to livingobjects' (status: failure)
- PR 181 will-moore 'Add labels support for import' (exclude comment)
- PR 170 will-moore 'Use ome zarr models py' (stage: draft)
- PR 167 dominikl 'Add extinfo command' (stage: draft)
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..9f844b8
Previously merged:
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py'
- PR 192 jburel 'Set Omero pixel size'
- PR 186 jburel 'Create release from tag'
- PR 187 dominikl 'Fix target-by-name option'
- PR 180 will-moore 'Import command'
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 193 dominikl 'Only parse import uris if stated'
Conflicting PRs (not included):
- PR 174 will-moore 'Skip wells'
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
- PR 182 will-moore 'Revert "Remove support for Plate import"'
Repository: ome/omero-figure
Excluded PRs:
- PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
Updating 9cc36cde..f94afbb2
Previously merged:
- PR 685 will-moore 'Fix static files links for release build'
- PR 683 will-moore 'Add touch support for clicking on single panel'
- PR 680 will-moore 'Use --pre install for export script in README'
- PR 684 will-moore 'Fix PKG_VERSION fix in publish_pypi.yml'
- PR 682 will-moore 'Enable pre-release rc workflow with bumpversion and publish to pypi'
- PR 679 will-moore 'Remove commit from gist demoUrl to load latest, with livingobjects URLs'
- PR 677 dependabot[bot] 'Bump vite from 6.4.1 to 6.4.2'
- PR 666 will-moore 'Standalone app'
- PR 676 dependabot[bot] 'Bump picomatch'
- PR 669 will-moore 'Standalone python script'
- PR 662 will-moore 'Export script handles OME-zarr images'
- PR 663 will-moore 'Zarr'
- PR 674 dependabot[bot] 'Bump immutable from 4.1.0 to 4.3.8'
- PR 675 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.2'
- PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8'
- PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues'
- PR 667 Tom-TBT 'Label suggestion interface'
- PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID'
- PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
- PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0'
- PR 664 Nirkan 'Handle many channels '
- PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
- PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540'
- PR 661 Rdornier 'Align to grid - check if panels are already in the grid'
- PR 649 jburel 'Replace manual changelog by automated GH release step'
- PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
- PR 637 Rdornier 'Fix scalebar position'
- PR 600 Rdornier 'Label on rois'
- PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
- PR 651 Rdornier 'More compliant align to grid'
- PR 650 jburel 'Bump Python version'
- PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
- PR 646 JensWendt 'fix word wrap of image names'
- PR 612 will-moore 'Script version'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 616 Rdornier 'Fix labels around border'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 '
- PR 681 dependabot[bot] 'Bump dompurify from 3.3.2 to 3.4.0'
- PR 686 will-moore 'Add note about zarr etc requirement for export script with zarr images'
- PR 688 will-moore 'app handles ?image=1 without needing /new?image=1'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
- PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft)
- PR 508 will-moore 'Broadcast channel demo' (stage: draft)
- PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft)
- PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
- PR 227 will-moore 'Vectortile investigation' (status: failure)
Updating 7a798ce..02bc855
Previously merged:
- PR 525 dependabot[bot] 'Bump postcss from 8.4.31 to 8.5.10'
- PR 524 dependabot[bot] 'Bump protocol-buffers-schema from 3.3.2 to 3.6.1'
- PR 523 dependabot[bot] 'Bump follow-redirects from 1.15.6 to 1.16.0'
- PR 522 dependabot[bot] 'Bump lodash from 4.17.21 to 4.18.1'
- PR 521 dependabot[bot] 'Bump brace-expansion from 1.1.11 to 1.1.13'
- PR 520 dependabot[bot] 'Bump node-forge from 1.3.1 to 1.4.0'
- PR 519 dependabot[bot] 'Bump picomatch from 2.3.1 to 2.3.2'
- PR 518 dependabot[bot] 'Bump ajv from 6.12.6 to 6.14.0'
- PR 514 Tom-TBT 'Fix where interpolate_pixels server config is read from'
- PR 513 jburel 'Bump Python version'
- PR 512 jburel 'Replace manual changelog by automated GH release step'
- PR 465 will-moore 'Save as Figure'
- PR 517 will-moore 'Fix roi link permissions'
- PR 516 dependabot[bot] 'Bump socket.io-parser from 4.2.4 to 4.2.6'
- PR 510 joshmoore 'Re-enable omero-test-infra'
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 460 will-moore 'Channel min spinner fix'
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 526 will-moore 'Add keyboard handling for Left, Right, Up, Down Arrows to pan'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-metadata
Updating 3cd120c..55060a2
Previously merged:
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 92 dominikl 'add resolve_rois to projectwrapper'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Updating bdfeb5e..fc9ff96
Previously merged:
- PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml'
- PR 35 will-moore 'Add roi to array functions'
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Merged PRs:
- PR 74 joshmoore 'Add 'ms' target for ./docker'
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/rOMERO-gateway
Already up to date.
Repository: ome/scripts
Updating 4b4c755..5b4d768
Previously merged:
- PR 231 jburel 'Create Release '
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Generated by OMERO-plugins-push#134 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/134/)'
2026-05-05 07:46:21,211 [ scc.git] DEBUG [detached HEAD be17dd3] merge master -Dorg -Ssuccess-only
2026-05-05 07:46:21,211 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-)
2026-05-05 07:46:21,211 [ scc.merge] INFO Repository: ome/omero-plugins
2026-05-05 07:46:21,211 [ scc.merge] INFO Already up to date.
2026-05-05 07:46:21,211 [ scc.merge] INFO
2026-05-05 07:46:21,211 [ scc.merge] INFO Merged PRs:
2026-05-05 07:46:21,211 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2026-05-05 07:46:21,211 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2026-05-05 07:46:21,211 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2026-05-05 07:46:21,211 [ scc.merge] INFO
2026-05-05 07:46:21,211 [ scc.merge] INFO Repository: ome/minimal-omero-client
2026-05-05 07:46:21,211 [ scc.merge] INFO Already up to date.
2026-05-05 07:46:21,211 [ scc.merge] INFO
2026-05-05 07:46:21,211 [ scc.merge] INFO
2026-05-05 07:46:21,211 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2026-05-05 07:46:21,211 [ scc.merge] INFO Excluded PRs:
2026-05-05 07:46:21,211 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2026-05-05 07:46:21,211 [ scc.merge] INFO Already up to date.
2026-05-05 07:46:21,211 [ scc.merge] INFO
2026-05-05 07:46:21,211 [ scc.merge] INFO Merged PRs:
2026-05-05 07:46:21,211 [ scc.merge] INFO - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-05-05 07:46:21,211 [ scc.merge] INFO
2026-05-05 07:46:21,211 [ scc.merge] INFO Repository: ome/omero-cli-render
2026-05-05 07:46:21,211 [ scc.merge] INFO Excluded PRs:
2026-05-05 07:46:21,212 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2026-05-05 07:46:21,212 [ scc.merge] INFO Updating ce6e13c..68b7303
2026-05-05 07:46:21,212 [ scc.merge] INFO Previously merged:
2026-05-05 07:46:21,212 [ scc.merge] INFO - PR 74 jburel 'Replace manual changelog by automated GH release step'
2026-05-05 07:46:21,212 [ scc.merge] INFO - PR 75 jburel 'Sort the new channels to ensure settings are set'
2026-05-05 07:46:21,212 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2026-05-05 07:46:21,212 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2026-05-05 07:46:21,212 [ scc.merge] INFO
2026-05-05 07:46:21,212 [ scc.merge] INFO Merged PRs:
2026-05-05 07:46:21,212 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2026-05-05 07:46:21,212 [ scc.merge] INFO
2026-05-05 07:46:21,212 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2026-05-05 07:46:21,212 [ scc.merge] INFO Excluded PRs:
2026-05-05 07:46:21,212 [ scc.merge] INFO - PR 194 will-moore 'Update uk1s3.embassy links to livingobjects' (status: failure)
2026-05-05 07:46:21,212 [ scc.merge] INFO - PR 181 will-moore 'Add labels support for import' (exclude comment)
2026-05-05 07:46:21,212 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft)
2026-05-05 07:46:21,212 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft)
2026-05-05 07:46:21,212 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2026-05-05 07:46:21,212 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2026-05-05 07:46:21,212 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2026-05-05 07:46:21,212 [ scc.merge] INFO Updating 11d3587..9f844b8
2026-05-05 07:46:21,212 [ scc.merge] INFO Previously merged:
2026-05-05 07:46:21,212 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py'
2026-05-05 07:46:21,212 [ scc.merge] INFO - PR 192 jburel 'Set Omero pixel size'
2026-05-05 07:46:21,212 [ scc.merge] INFO - PR 186 jburel 'Create release from tag'
2026-05-05 07:46:21,212 [ scc.merge] INFO - PR 187 dominikl 'Fix target-by-name option'
2026-05-05 07:46:21,212 [ scc.merge] INFO - PR 180 will-moore 'Import command'
2026-05-05 07:46:21,212 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2026-05-05 07:46:21,212 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2026-05-05 07:46:21,212 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2026-05-05 07:46:21,212 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2026-05-05 07:46:21,212 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2026-05-05 07:46:21,212 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2026-05-05 07:46:21,212 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-05-05 07:46:21,212 [ scc.merge] INFO
2026-05-05 07:46:21,212 [ scc.merge] INFO Merged PRs:
2026-05-05 07:46:21,212 [ scc.merge] INFO - PR 193 dominikl 'Only parse import uris if stated'
2026-05-05 07:46:21,212 [ scc.merge] INFO
2026-05-05 07:46:21,212 [ scc.merge] INFO Conflicting PRs (not included):
2026-05-05 07:46:21,212 [ scc.merge] INFO - PR 174 will-moore 'Skip wells'
2026-05-05 07:46:21,212 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2026-05-05 07:46:21,213 [ scc.merge] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"'
2026-05-05 07:46:21,213 [ scc.merge] INFO
2026-05-05 07:46:21,213 [ scc.merge] INFO Repository: ome/omero-figure
2026-05-05 07:46:21,213 [ scc.merge] INFO Excluded PRs:
2026-05-05 07:46:21,213 [ scc.merge] INFO - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier)
2026-05-05 07:46:21,213 [ scc.merge] INFO Updating 9cc36cde..f94afbb2
2026-05-05 07:46:21,213 [ scc.merge] INFO Previously merged:
2026-05-05 07:46:21,213 [ scc.merge] INFO - PR 685 will-moore 'Fix static files links for release build'
2026-05-05 07:46:21,213 [ scc.merge] INFO - PR 683 will-moore 'Add touch support for clicking on single panel'
2026-05-05 07:46:21,213 [ scc.merge] INFO - PR 680 will-moore 'Use --pre install for export script in README'
2026-05-05 07:46:21,213 [ scc.merge] INFO - PR 684 will-moore 'Fix PKG_VERSION fix in publish_pypi.yml'
2026-05-05 07:46:21,213 [ scc.merge] INFO - PR 682 will-moore 'Enable pre-release rc workflow with bumpversion and publish to pypi'
2026-05-05 07:46:21,213 [ scc.merge] INFO - PR 679 will-moore 'Remove commit from gist demoUrl to load latest, with livingobjects URLs'
2026-05-05 07:46:21,213 [ scc.merge] INFO - PR 677 dependabot[bot] 'Bump vite from 6.4.1 to 6.4.2'
2026-05-05 07:46:21,213 [ scc.merge] INFO - PR 666 will-moore 'Standalone app'
2026-05-05 07:46:21,213 [ scc.merge] INFO - PR 676 dependabot[bot] 'Bump picomatch'
2026-05-05 07:46:21,213 [ scc.merge] INFO - PR 669 will-moore 'Standalone python script'
2026-05-05 07:46:21,213 [ scc.merge] INFO - PR 662 will-moore 'Export script handles OME-zarr images'
2026-05-05 07:46:21,213 [ scc.merge] INFO - PR 663 will-moore 'Zarr'
2026-05-05 07:46:21,213 [ scc.merge] INFO - PR 674 dependabot[bot] 'Bump immutable from 4.1.0 to 4.3.8'
2026-05-05 07:46:21,213 [ scc.merge] INFO - PR 675 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.2'
2026-05-05 07:46:21,213 [ scc.merge] INFO - PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8'
2026-05-05 07:46:21,213 [ scc.merge] INFO - PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues'
2026-05-05 07:46:21,213 [ scc.merge] INFO - PR 667 Tom-TBT 'Label suggestion interface'
2026-05-05 07:46:21,213 [ scc.merge] INFO - PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID'
2026-05-05 07:46:21,213 [ scc.merge] INFO - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
2026-05-05 07:46:21,213 [ scc.merge] INFO - PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0'
2026-05-05 07:46:21,213 [ scc.merge] INFO - PR 664 Nirkan 'Handle many channels '
2026-05-05 07:46:21,213 [ scc.merge] INFO - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
2026-05-05 07:46:21,213 [ scc.merge] INFO - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540'
2026-05-05 07:46:21,213 [ scc.merge] INFO - PR 661 Rdornier 'Align to grid - check if panels are already in the grid'
2026-05-05 07:46:21,213 [ scc.merge] INFO - PR 649 jburel 'Replace manual changelog by automated GH release step'
2026-05-05 07:46:21,213 [ scc.merge] INFO - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
2026-05-05 07:46:21,213 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2026-05-05 07:46:21,213 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2026-05-05 07:46:21,213 [ scc.merge] INFO - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
2026-05-05 07:46:21,213 [ scc.merge] INFO - PR 651 Rdornier 'More compliant align to grid'
2026-05-05 07:46:21,213 [ scc.merge] INFO - PR 650 jburel 'Bump Python version'
2026-05-05 07:46:21,213 [ scc.merge] INFO - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
2026-05-05 07:46:21,213 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2026-05-05 07:46:21,213 [ scc.merge] INFO - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
2026-05-05 07:46:21,214 [ scc.merge] INFO - PR 646 JensWendt 'fix word wrap of image names'
2026-05-05 07:46:21,214 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2026-05-05 07:46:21,214 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2026-05-05 07:46:21,214 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2026-05-05 07:46:21,214 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2026-05-05 07:46:21,214 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2026-05-05 07:46:21,214 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2026-05-05 07:46:21,214 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2026-05-05 07:46:21,214 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2026-05-05 07:46:21,214 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-05-05 07:46:21,214 [ scc.merge] INFO
2026-05-05 07:46:21,214 [ scc.merge] INFO Merged PRs:
2026-05-05 07:46:21,214 [ scc.merge] INFO - PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 '
2026-05-05 07:46:21,214 [ scc.merge] INFO - PR 681 dependabot[bot] 'Bump dompurify from 3.3.2 to 3.4.0'
2026-05-05 07:46:21,214 [ scc.merge] INFO - PR 686 will-moore 'Add note about zarr etc requirement for export script with zarr images'
2026-05-05 07:46:21,214 [ scc.merge] INFO - PR 688 will-moore 'app handles ?image=1 without needing /new?image=1'
2026-05-05 07:46:21,214 [ scc.merge] INFO
2026-05-05 07:46:21,214 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2026-05-05 07:46:21,214 [ scc.merge] INFO Already up to date.
2026-05-05 07:46:21,214 [ scc.merge] INFO
2026-05-05 07:46:21,214 [ scc.merge] INFO Merged PRs:
2026-05-05 07:46:21,214 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2026-05-05 07:46:21,214 [ scc.merge] INFO - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-05-05 07:46:21,214 [ scc.merge] INFO
2026-05-05 07:46:21,214 [ scc.merge] INFO Repository: ome/omero-gallery
2026-05-05 07:46:21,214 [ scc.merge] INFO Already up to date.
2026-05-05 07:46:21,214 [ scc.merge] INFO
2026-05-05 07:46:21,214 [ scc.merge] INFO Merged PRs:
2026-05-05 07:46:21,214 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2026-05-05 07:46:21,214 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2026-05-05 07:46:21,214 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2026-05-05 07:46:21,214 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2026-05-05 07:46:21,214 [ scc.merge] INFO
2026-05-05 07:46:21,214 [ scc.merge] INFO Conflicting PRs (not included):
2026-05-05 07:46:21,214 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2026-05-05 07:46:21,214 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2026-05-05 07:46:21,214 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2026-05-05 07:46:21,214 [ scc.merge] INFO
2026-05-05 07:46:21,214 [ scc.merge] INFO Repository: ome/omero-iviewer
2026-05-05 07:46:21,214 [ scc.merge] INFO Excluded PRs:
2026-05-05 07:46:21,214 [ scc.merge] INFO - PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft)
2026-05-05 07:46:21,214 [ scc.merge] INFO - PR 508 will-moore 'Broadcast channel demo' (stage: draft)
2026-05-05 07:46:21,215 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft)
2026-05-05 07:46:21,215 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft)
2026-05-05 07:46:21,215 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2026-05-05 07:46:21,215 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2026-05-05 07:46:21,215 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure)
2026-05-05 07:46:21,215 [ scc.merge] INFO Updating 7a798ce..02bc855
2026-05-05 07:46:21,215 [ scc.merge] INFO Previously merged:
2026-05-05 07:46:21,215 [ scc.merge] INFO - PR 525 dependabot[bot] 'Bump postcss from 8.4.31 to 8.5.10'
2026-05-05 07:46:21,215 [ scc.merge] INFO - PR 524 dependabot[bot] 'Bump protocol-buffers-schema from 3.3.2 to 3.6.1'
2026-05-05 07:46:21,215 [ scc.merge] INFO - PR 523 dependabot[bot] 'Bump follow-redirects from 1.15.6 to 1.16.0'
2026-05-05 07:46:21,215 [ scc.merge] INFO - PR 522 dependabot[bot] 'Bump lodash from 4.17.21 to 4.18.1'
2026-05-05 07:46:21,215 [ scc.merge] INFO - PR 521 dependabot[bot] 'Bump brace-expansion from 1.1.11 to 1.1.13'
2026-05-05 07:46:21,215 [ scc.merge] INFO - PR 520 dependabot[bot] 'Bump node-forge from 1.3.1 to 1.4.0'
2026-05-05 07:46:21,215 [ scc.merge] INFO - PR 519 dependabot[bot] 'Bump picomatch from 2.3.1 to 2.3.2'
2026-05-05 07:46:21,215 [ scc.merge] INFO - PR 518 dependabot[bot] 'Bump ajv from 6.12.6 to 6.14.0'
2026-05-05 07:46:21,215 [ scc.merge] INFO - PR 514 Tom-TBT 'Fix where interpolate_pixels server config is read from'
2026-05-05 07:46:21,215 [ scc.merge] INFO - PR 513 jburel 'Bump Python version'
2026-05-05 07:46:21,215 [ scc.merge] INFO - PR 512 jburel 'Replace manual changelog by automated GH release step'
2026-05-05 07:46:21,215 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2026-05-05 07:46:21,215 [ scc.merge] INFO - PR 517 will-moore 'Fix roi link permissions'
2026-05-05 07:46:21,215 [ scc.merge] INFO - PR 516 dependabot[bot] 'Bump socket.io-parser from 4.2.4 to 4.2.6'
2026-05-05 07:46:21,215 [ scc.merge] INFO - PR 510 joshmoore 'Re-enable omero-test-infra'
2026-05-05 07:46:21,215 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-05-05 07:46:21,215 [ scc.merge] INFO
2026-05-05 07:46:21,215 [ scc.merge] INFO Merged PRs:
2026-05-05 07:46:21,215 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix'
2026-05-05 07:46:21,215 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2026-05-05 07:46:21,215 [ scc.merge] INFO - PR 526 will-moore 'Add keyboard handling for Left, Right, Up, Down Arrows to pan'
2026-05-05 07:46:21,215 [ scc.merge] INFO
2026-05-05 07:46:21,215 [ scc.merge] INFO Repository: ome/omero-mapr
2026-05-05 07:46:21,215 [ scc.merge] INFO Excluded PRs:
2026-05-05 07:46:21,215 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2026-05-05 07:46:21,215 [ scc.merge] INFO Already up to date.
2026-05-05 07:46:21,215 [ scc.merge] INFO
2026-05-05 07:46:21,215 [ scc.merge] INFO Merged PRs:
2026-05-05 07:46:21,215 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient'
2026-05-05 07:46:21,215 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-05-05 07:46:21,215 [ scc.merge] INFO
2026-05-05 07:46:21,215 [ scc.merge] INFO Conflicting PRs (not included):
2026-05-05 07:46:21,215 [ scc.merge] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-05-05 07:46:21,215 [ scc.merge] INFO
2026-05-05 07:46:21,215 [ scc.merge] INFO Repository: ome/omero-metadata
2026-05-05 07:46:21,216 [ scc.merge] INFO Updating 3cd120c..55060a2
2026-05-05 07:46:21,216 [ scc.merge] INFO Previously merged:
2026-05-05 07:46:21,216 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-05-05 07:46:21,216 [ scc.merge] INFO
2026-05-05 07:46:21,216 [ scc.merge] INFO Merged PRs:
2026-05-05 07:46:21,216 [ scc.merge] INFO - PR 92 dominikl 'add resolve_rois to projectwrapper'
2026-05-05 07:46:21,216 [ scc.merge] INFO
2026-05-05 07:46:21,216 [ scc.merge] INFO Conflicting PRs (not included):
2026-05-05 07:46:21,216 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2026-05-05 07:46:21,216 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2026-05-05 07:46:21,216 [ scc.merge] INFO
2026-05-05 07:46:21,216 [ scc.merge] INFO Repository: ome/omero-parade
2026-05-05 07:46:21,216 [ scc.merge] INFO Excluded PRs:
2026-05-05 07:46:21,216 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2026-05-05 07:46:21,216 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2026-05-05 07:46:21,216 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2026-05-05 07:46:21,216 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2026-05-05 07:46:21,216 [ scc.merge] INFO Already up to date.
2026-05-05 07:46:21,216 [ scc.merge] INFO
2026-05-05 07:46:21,216 [ scc.merge] INFO Merged PRs:
2026-05-05 07:46:21,216 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2026-05-05 07:46:21,216 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2026-05-05 07:46:21,216 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-05-05 07:46:21,216 [ scc.merge] INFO
2026-05-05 07:46:21,216 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2026-05-05 07:46:21,216 [ scc.merge] INFO Already up to date.
2026-05-05 07:46:21,216 [ scc.merge] INFO
2026-05-05 07:46:21,216 [ scc.merge] INFO Merged PRs:
2026-05-05 07:46:21,216 [ scc.merge] INFO - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-05-05 07:46:21,216 [ scc.merge] INFO
2026-05-05 07:46:21,216 [ scc.merge] INFO Repository: ome/omero-rois
2026-05-05 07:46:21,216 [ scc.merge] INFO Excluded PRs:
2026-05-05 07:46:21,216 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2026-05-05 07:46:21,216 [ scc.merge] INFO Updating bdfeb5e..fc9ff96
2026-05-05 07:46:21,216 [ scc.merge] INFO Previously merged:
2026-05-05 07:46:21,216 [ scc.merge] INFO - PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml'
2026-05-05 07:46:21,216 [ scc.merge] INFO - PR 35 will-moore 'Add roi to array functions'
2026-05-05 07:46:21,216 [ scc.merge] INFO
2026-05-05 07:46:21,216 [ scc.merge] INFO
2026-05-05 07:46:21,216 [ scc.merge] INFO Repository: ome/omero-signup
2026-05-05 07:46:21,216 [ scc.merge] INFO Already up to date.
2026-05-05 07:46:21,216 [ scc.merge] INFO
2026-05-05 07:46:21,216 [ scc.merge] INFO Merged PRs:
2026-05-05 07:46:21,217 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-05-05 07:46:21,217 [ scc.merge] INFO
2026-05-05 07:46:21,217 [ scc.merge] INFO Conflicting PRs (not included):
2026-05-05 07:46:21,217 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2026-05-05 07:46:21,217 [ scc.merge] INFO
2026-05-05 07:46:21,217 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2026-05-05 07:46:21,217 [ scc.merge] INFO Excluded PRs:
2026-05-05 07:46:21,217 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2026-05-05 07:46:21,217 [ scc.merge] INFO Updating cda3ec6..c8a0015
2026-05-05 07:46:21,217 [ scc.merge] INFO Previously merged:
2026-05-05 07:46:21,217 [ scc.merge] INFO - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
2026-05-05 07:46:21,217 [ scc.merge] INFO - PR 82 jburel 'Upgrade python'
2026-05-05 07:46:21,217 [ scc.merge] INFO - PR 81 erickmartins 'add ulimits to omero-server container'
2026-05-05 07:46:21,217 [ scc.merge] INFO
2026-05-05 07:46:21,217 [ scc.merge] INFO Merged PRs:
2026-05-05 07:46:21,217 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker'
2026-05-05 07:46:21,217 [ scc.merge] INFO
2026-05-05 07:46:21,217 [ scc.merge] INFO Repository: ome/omero-upload
2026-05-05 07:46:21,217 [ scc.merge] INFO Already up to date.
2026-05-05 07:46:21,217 [ scc.merge] INFO
2026-05-05 07:46:21,217 [ scc.merge] INFO Merged PRs:
2026-05-05 07:46:21,217 [ scc.merge] INFO - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-05-05 07:46:21,217 [ scc.merge] INFO
2026-05-05 07:46:21,217 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2026-05-05 07:46:21,217 [ scc.merge] INFO Updating deab817..160d894
2026-05-05 07:46:21,217 [ scc.merge] INFO Previously merged:
2026-05-05 07:46:21,217 [ scc.merge] INFO - PR 20 jburel 'Build'
2026-05-05 07:46:21,217 [ scc.merge] INFO
2026-05-05 07:46:21,217 [ scc.merge] INFO Merged PRs:
2026-05-05 07:46:21,217 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-05-05 07:46:21,217 [ scc.merge] INFO
2026-05-05 07:46:21,217 [ scc.merge] INFO Repository: ome/omero-web-zarr
2026-05-05 07:46:21,217 [ scc.merge] INFO Excluded PRs:
2026-05-05 07:46:21,217 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2026-05-05 07:46:21,217 [ scc.merge] INFO Updating 8f3c313..4e1e685
2026-05-05 07:46:21,217 [ scc.merge] INFO Previously merged:
2026-05-05 07:46:21,217 [ scc.merge] INFO - PR 23 lubianat 'Fix mix of .rst and .md on README'
2026-05-05 07:46:21,217 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2026-05-05 07:46:21,217 [ scc.merge] INFO
2026-05-05 07:46:21,217 [ scc.merge] INFO Merged PRs:
2026-05-05 07:46:21,217 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import'
2026-05-05 07:46:21,217 [ scc.merge] INFO
2026-05-05 07:46:21,218 [ scc.merge] INFO Conflicting PRs (not included):
2026-05-05 07:46:21,218 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2026-05-05 07:46:21,218 [ scc.merge] INFO
2026-05-05 07:46:21,218 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2026-05-05 07:46:21,218 [ scc.merge] INFO Already up to date.
2026-05-05 07:46:21,218 [ scc.merge] INFO
2026-05-05 07:46:21,218 [ scc.merge] INFO Merged PRs:
2026-05-05 07:46:21,218 [ scc.merge] INFO - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-05-05 07:46:21,218 [ scc.merge] INFO
2026-05-05 07:46:21,218 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2026-05-05 07:46:21,218 [ scc.merge] INFO Already up to date.
2026-05-05 07:46:21,218 [ scc.merge] INFO
2026-05-05 07:46:21,218 [ scc.merge] INFO Merged PRs:
2026-05-05 07:46:21,218 [ scc.merge] INFO - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-05-05 07:46:21,218 [ scc.merge] INFO
2026-05-05 07:46:21,218 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2026-05-05 07:46:21,218 [ scc.merge] INFO Already up to date.
2026-05-05 07:46:21,218 [ scc.merge] INFO
2026-05-05 07:46:21,218 [ scc.merge] INFO
2026-05-05 07:46:21,218 [ scc.merge] INFO Repository: ome/scripts
2026-05-05 07:46:21,218 [ scc.merge] INFO Updating 4b4c755..5b4d768
2026-05-05 07:46:21,218 [ scc.merge] INFO Previously merged:
2026-05-05 07:46:21,218 [ scc.merge] INFO - PR 231 jburel 'Create Release '
2026-05-05 07:46:21,218 [ scc.merge] INFO - PR 229 Rdornier 'Adding support for custom user label'
2026-05-05 07:46:21,218 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2026-05-05 07:46:21,218 [ scc.merge] INFO - PR 230 Rdornier 'Import from csv fix'
2026-05-05 07:46:21,218 [ scc.merge] INFO - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
2026-05-05 07:46:21,218 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2026-05-05 07:46:21,218 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2026-05-05 07:46:21,218 [ scc.merge] INFO
2026-05-05 07:46:21,218 [ scc.merge] INFO
2026-05-05 07:46:21,218 [ scc.merge] DEBUG Cleaning remote branches created for merging
2026-05-05 07:46:21,218 [ scc.git] DEBUG Calling 'git remote'
2026-05-05 07:46:21,220 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2026-05-05 07:46:21,221 [ scc.git] DEBUG Calling 'git remote'
2026-05-05 07:46:21,223 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-05 07:46:21,223 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2026-05-05 07:46:21,223 [ scc.git] DEBUG Calling 'git remote'
2026-05-05 07:46:21,225 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-05 07:46:21,225 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2026-05-05 07:46:21,225 [ scc.git] DEBUG Calling 'git remote'
2026-05-05 07:46:21,227 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-05 07:46:21,227 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2026-05-05 07:46:21,227 [ scc.git] DEBUG Calling 'git remote'
2026-05-05 07:46:21,229 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-05 07:46:21,229 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2026-05-05 07:46:21,229 [ scc.git] DEBUG Calling 'git remote'
2026-05-05 07:46:21,231 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-05 07:46:21,231 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2026-05-05 07:46:21,232 [ scc.git] DEBUG Calling 'git remote'
2026-05-05 07:46:21,234 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-05 07:46:21,234 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2026-05-05 07:46:21,234 [ scc.git] DEBUG Calling 'git remote'
2026-05-05 07:46:21,236 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-05 07:46:21,236 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2026-05-05 07:46:21,236 [ scc.git] DEBUG Calling 'git remote'
2026-05-05 07:46:21,238 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-05 07:46:21,238 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2026-05-05 07:46:21,238 [ scc.git] DEBUG Calling 'git remote'
2026-05-05 07:46:21,240 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-05 07:46:21,240 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2026-05-05 07:46:21,240 [ scc.git] DEBUG Calling 'git remote'
2026-05-05 07:46:21,242 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-05 07:46:21,242 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2026-05-05 07:46:21,242 [ scc.git] DEBUG Calling 'git remote'
2026-05-05 07:46:21,244 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-05 07:46:21,244 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2026-05-05 07:46:21,244 [ scc.git] DEBUG Calling 'git remote'
2026-05-05 07:46:21,246 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-05 07:46:21,246 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2026-05-05 07:46:21,246 [ scc.git] DEBUG Calling 'git remote'
2026-05-05 07:46:21,248 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-05 07:46:21,248 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2026-05-05 07:46:21,249 [ scc.git] DEBUG Calling 'git remote'
2026-05-05 07:46:21,251 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-05 07:46:21,251 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2026-05-05 07:46:21,251 [ scc.git] DEBUG Calling 'git remote'
2026-05-05 07:46:21,253 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-05 07:46:21,253 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2026-05-05 07:46:21,253 [ scc.git] DEBUG Calling 'git remote'
2026-05-05 07:46:21,255 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-05 07:46:21,255 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2026-05-05 07:46:21,255 [ scc.git] DEBUG Calling 'git remote'
2026-05-05 07:46:21,257 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-05 07:46:21,257 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-05-05 07:46:21,257 [ scc.git] DEBUG Calling 'git remote'
2026-05-05 07:46:21,259 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-05 07:46:21,259 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-05-05 07:46:21,259 [ scc.git] DEBUG Calling 'git remote'
2026-05-05 07:46:21,261 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-05 07:46:21,261 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-05-05 07:46:21,261 [ scc.git] DEBUG Calling 'git remote'
2026-05-05 07:46:21,263 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-05 07:46:21,263 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-05-05 07:46:21,263 [ scc.git] DEBUG Calling 'git remote'
2026-05-05 07:46:21,265 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-05-05 07:46:21,265 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-05-05 07:46:21,265 [ scc.git] DEBUG Calling 'git remote'
2026-05-05 07:46:21,267 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '8.0.1.rc2' to '8.0.1rc2'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '8.0.1.rc2' to '8.0.1rc2'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.10.6-SNAPSHOT
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Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD 72e8486] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
HEAD detached from 4777ef8
nothing to commit, working tree clean
Entering 'omero-cli-render'
HEAD detached from ce6e13c
nothing to commit, working tree clean
Entering 'omero-cli-zarr'
HEAD detached from 11d3587
Untracked files:
(use "git add <file>..." to include in what will be committed)
.eggs/
nothing added to commit but untracked files present (use "git add" to track)
Entering 'omero-figure'
HEAD detached from 9cc36cde
nothing to commit, working tree clean
Entering 'omero-fpbioimage'
HEAD detached from 3b6c05a
nothing to commit, working tree clean
Entering 'omero-gallery'
HEAD detached from 2a621da
nothing to commit, working tree clean
Entering 'omero-iviewer'
HEAD detached from 7a798ce
nothing to commit, working tree clean
Entering 'omero-mapr'
HEAD detached from 0a557da
nothing to commit, working tree clean
Entering 'omero-metadata'
HEAD detached from 3cd120c
nothing to commit, working tree clean
Entering 'omero-parade'
HEAD detached from fb5ae86
nothing to commit, working tree clean
Entering 'omero-prometheus-tools'
HEAD detached from eb47378
nothing to commit, working tree clean
Entering 'omero-rois'
HEAD detached from bdfeb5e
nothing to commit, working tree clean
Entering 'omero-signup'
HEAD detached from be76813
nothing to commit, working tree clean
Entering 'omero-test-infra'
HEAD detached from cda3ec6
nothing to commit, working tree clean
Entering 'omero-upload'
HEAD detached from 100f6ae
nothing to commit, working tree clean
Entering 'omero-virtual-microscope'
HEAD detached from deab817
nothing to commit, working tree clean
Entering 'omero-web-zarr'
HEAD detached from 8f3c313
nothing to commit, working tree clean
Entering 'omero-weberror'
HEAD detached from 70b01ed
nothing to commit, working tree clean
Entering 'omero-webtest'
HEAD detached from 5bfef29
nothing to commit, working tree clean
Entering 'rOMERO-gateway'
HEAD detached from 7b5d64d
nothing to commit, working tree clean
Entering 'scripts'
HEAD detached from 4b4c755
nothing to commit, working tree clean
[detached HEAD 147bede] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2026-05-05 07:47:10,816 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2026-05-05 07:47:20,978 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2026-05-05 07:47:23,659 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-05-05 07:47:28,837 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-05-05 07:48:17,568 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
