09:45:50 Started by user devspace 09:45:50 Running as SYSTEM 09:45:50 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push 09:45:50 The recommended git tool is: NONE 09:45:50 No credentials specified 09:45:50 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10 09:45:50 Fetching changes from the remote Git repository 09:45:51 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10 09:45:51 Fetching upstream changes from https://github.com/ome/openmicroscopy.git 09:45:51 > git --version # timeout=10 09:45:51 > git --version # 'git version 2.52.0' 09:45:51 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 09:45:53 > git rev-parse origin/develop^{commit} # timeout=10 09:45:53 Checking out Revision e0330f9ffe63650eddd0c1aaabdd869a198491fc (origin/develop) 09:45:53 > git config core.sparsecheckout # timeout=10 09:45:53 > git checkout -f e0330f9ffe63650eddd0c1aaabdd869a198491fc # timeout=30 09:45:56 Commit message: "Merge pull request #6458 from will-moore/get_objects_annotations_tests" 09:45:56 > git rev-list --no-walk e0330f9ffe63650eddd0c1aaabdd869a198491fc # timeout=10 09:45:56 Cleaning workspace 09:45:56 > git rev-parse --verify HEAD # timeout=10 09:45:56 Resetting working tree 09:45:56 > git reset --hard # timeout=10 09:45:56 > git clean -fdx # timeout=10 09:45:57 Copied 1 artifact from "OMERO-python-superbuild-build" build number 86 09:45:57 [OMERO-push] $ /bin/bash -xe /tmp/jenkins4775593512763707673.sh 09:45:57 + python3.11 -mvenv venv 09:45:59 + source /home/omero/workspace/OMERO-push/venv/bin/activate 09:45:59 ++ deactivate nondestructive 09:45:59 ++ '[' -n '' ']' 09:45:59 ++ '[' -n '' ']' 09:45:59 ++ hash -r 09:45:59 ++ '[' -n '' ']' 09:45:59 ++ unset VIRTUAL_ENV 09:45:59 ++ unset VIRTUAL_ENV_PROMPT 09:45:59 ++ '[' '!' nondestructive = nondestructive ']' 09:45:59 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv 09:45:59 ++ export VIRTUAL_ENV 09:45:59 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 09:45:59 ++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 09:45:59 ++ export PATH 09:45:59 ++ '[' -n '' ']' 09:45:59 ++ '[' -z '' ']' 09:45:59 ++ _OLD_VIRTUAL_PS1= 09:45:59 ++ PS1='(venv) ' 09:45:59 ++ export PS1 09:45:59 ++ VIRTUAL_ENV_PROMPT='(venv) ' 09:45:59 ++ export VIRTUAL_ENV_PROMPT 09:45:59 ++ hash -r 09:45:59 + pip install -U pip 09:46:01 Requirement already satisfied: pip in ./venv/lib64/python3.11/site-packages (26.2.1) 09:46:02 + pip install -U scc 09:46:03 Requirement already satisfied: scc in ./venv/lib64/python3.11/site-packages (0.20.0) 09:46:03 Requirement already satisfied: PyGithub>=1.54 in ./venv/lib64/python3.11/site-packages (from scc) (2.9.1) 09:46:03 Requirement already satisfied: PyYAML>=5.1 in ./venv/lib64/python3.11/site-packages (from scc) (6.0.3) 09:46:03 Requirement already satisfied: future in ./venv/lib64/python3.11/site-packages (from scc) (1.0.0) 09:46:03 Requirement already satisfied: ruamel.yaml in ./venv/lib64/python3.11/site-packages (from scc) (0.19.1) 09:46:03 Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.7) 09:46:03 Requirement already satisfied: six in ./venv/lib64/python3.11/site-packages (from scc) (1.17.0) 09:46:03 Requirement already satisfied: urllib3<2 in ./venv/lib64/python3.11/site-packages (from scc) (1.26.20) 09:46:03 Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.0) 09:46:03 Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (1.6.2) 09:46:03 Requirement already satisfied: requests>=2.14.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (2.34.2) 09:46:03 Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.13.0) 09:46:03 Requirement already satisfied: typing-extensions>=4.5.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (4.16.0) 09:46:03 Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (49.0.0) 09:46:03 Requirement already satisfied: cffi>=2.0.0 in ./venv/lib64/python3.11/site-packages (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.1.0) 09:46:03 Requirement already satisfied: pycparser in ./venv/lib64/python3.11/site-packages (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (3.0) 09:46:03 Requirement already satisfied: charset_normalizer<4,>=2 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.4.8) 09:46:03 Requirement already satisfied: idna<4,>=2.5 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.18) 09:46:03 Requirement already satisfied: certifi>=2023.5.7 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2026.6.17) 09:46:03 + test -e src 09:46:03 + cd src 09:46:03 ++ git config github.user 09:46:03 + user=snoopycrimecop 09:46:03 + scc merge develop --no-ask --reset --shallow -S success-only 09:46:12 2026-10-01 09:46:12,402 [ scc.merge] INFO Merging Pull Request(s) based on develop 09:46:12 2026-10-01 09:46:12,402 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 09:46:12 2026-10-01 09:46:12,402 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 09:46:12 2026-10-01 09:46:12,402 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 09:46:12 2026-10-01 09:46:12,402 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 09:46:12 2026-10-01 09:46:12,402 [ scc.merge] INFO Excluding Pull Request(s) without successful status 09:46:31 2026-10-01 09:46:31,928 [ scc.merge] INFO Repository: ome/openmicroscopy 09:46:31 2026-10-01 09:46:31,928 [ scc.merge] INFO Excluded PRs: 09:46:31 2026-10-01 09:46:31,928 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment) 09:46:31 2026-10-01 09:46:31,928 [ scc.merge] INFO Already up to date. 09:46:31 2026-10-01 09:46:31,928 [ scc.merge] INFO 09:46:31 2026-10-01 09:46:31,928 [ scc.merge] INFO Merged PRs: 09:46:31 2026-10-01 09:46:31,929 [ scc.merge] INFO - PR 6423 jburel 'Use \d' 09:46:31 2026-10-01 09:46:31,929 [ scc.merge] INFO - PR 6459 will-moore 'JSON API annotations tests' 09:46:31 2026-10-01 09:46:31,929 [ scc.merge] INFO - PR 6478 dominikl 'Add omero-zarr-pixel-buffer' 09:46:31 2026-10-01 09:46:31,929 [ scc.merge] INFO 09:46:32 + cp etc/omero.properties etc/omero.properties.bak 09:46:32 + rm etc/omero.properties 09:46:32 + touch etc/omero.properties 09:46:32 ++ sed -n '/Internal dependencies/=' etc/omero.properties.bak 09:46:32 + ne=249 09:46:32 ++ sed -n 1,249p etc/omero.properties.bak 09:46:32 + line='## 09:46:32 ## omero.properties 09:46:32 ## ---------------- 09:46:32 ## 09:46:32 ## DO NOT EDIT! 09:46:32 ## 09:46:32 ## 09:46:32 ## Any of these properties can be altered by using `omero config`. MODIFYING 09:46:32 ## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults 09:46:32 ## at compile time! 09:46:32 ## 09:46:32 ## For an overview of these properties, see 09:46:32 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html 09:46:32 ## 09:46:32 ## Properties marked with "DEVELOPMENT" should not be used in production. 09:46:32 09:46:32 # Comma separated list of Ice transports available to clients. The default 09:46:32 # value ("ssl,tcp") instructs Ice to open the ports specified by the 09:46:32 # omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl" 09:46:32 # will prevent all non-encrypted connections to the OMERO server. 09:46:32 # 09:46:32 # Additionally, there are two experimental values for using websockets: 09:46:32 # "ws" and "wss" for unencrypted and encrypted, respectively. The ports 09:46:32 # that are opened are controlled by the omero.ports.ws and omero.ports.wss 09:46:32 # properties. To enable all possible protocols use: "ssl,tcp,wss,ws". 09:46:32 # 09:46:32 # Note: When using websockets behind a web server like nginx, additional 09:46:32 # configuration may be needed. 09:46:32 omero.client.icetransports=ssl,tcp 09:46:32 09:46:32 # The prefix to apply to all port numbers (SSL, TCP, registry) used by the 09:46:32 # server 09:46:32 omero.ports.prefix= 09:46:32 09:46:32 # The Glacier2 SSL port number to use 09:46:32 omero.ports.ssl=4064 09:46:32 09:46:32 # The Glacier2 TCP port number to use (unencrypted) 09:46:32 omero.ports.tcp=4063 09:46:32 09:46:32 # The Glacier2 WSS port number to use 09:46:32 omero.ports.wss=4066 09:46:32 09:46:32 # The Glacier2 WS port number to use (unencrypted) 09:46:32 omero.ports.ws=4065 09:46:32 09:46:32 # The IceGrid registry port number to use 09:46:32 omero.ports.registry=4061 09:46:32 09:46:32 ############################################# 09:46:32 ## JVM configuration 09:46:32 ## 09:46:32 ## Note: changes to the omero.jvmcfg properties 09:46:32 ## will *not* be reflected in OMERO.server 09:46:32 ## since they are defined in OMERO.py. 09:46:32 ############################################# 09:46:32 ## (For documentation only) 09:46:32 # Memory strategy which will be used by default. 09:46:32 # Options include: percent, manual 09:46:32 omero.jvmcfg.strategy=percent 09:46:32 09:46:32 ## (For documentation only) 09:46:32 # Explicit value for the `-Xmx` argument, e.g. 09:46:32 # "1g" 09:46:32 omero.jvmcfg.heap_size= 09:46:32 09:46:32 ## (For documentation only) 09:46:32 # Explicit value for the MaxPermSize argument 09:46:32 # to the JVM, e.g. "500M". Ignored for Java8+ 09:46:32 omero.jvmcfg.perm_gen= 09:46:32 09:46:32 ## (For documentation only) 09:46:32 # Toggles on or off heap dumps on OOMs. Default is "off". 09:46:32 # The special value "tmp" will create the heap dumps in 09:46:32 # your temp directory. 09:46:32 omero.jvmcfg.heap_dump= 09:46:32 09:46:32 ## (For documentation only) 09:46:32 # Used only by the percent strategy. An integer between 0 09:46:32 # and 100 which is the percent of active memory that will 09:46:32 # be used by the service. 09:46:32 omero.jvmcfg.percent= 09:46:32 09:46:32 ## (For documentation only) 09:46:32 # Contains other parameters which should be passed to the 09:46:32 # JVM. The value of "append" is treated as if it were on 09:46:32 # the command line so will be separated on whitespace. 09:46:32 # For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would 09:46:32 # results in two new arguments. 09:46:32 # Note that when using `config set` from the command line 09:46:32 # one may need to give a prior `--` option to prevent a value 09:46:32 # starting with `-` from already being parsed as an option, 09:46:32 # and values may need quoting to prevent whitespace or other 09:46:32 # significant characters from being interpreted prematurely. 09:46:32 09:46:32 omero.jvmcfg.append= 09:46:32 09:46:32 ## (For documentation only) 09:46:32 # Manual override of the total system memory that 09:46:32 # OMERO will *think* is present on the local OS (MB). 09:46:32 # If unset, an attempt will be made to detect the actual 09:46:32 # amount: first by using the Python library `psutil` and 09:46:32 # if that is not installed, by running a Java tool. If 09:46:32 # neither works, 4.0GB is assumed. 09:46:32 omero.jvmcfg.system_memory= 09:46:32 09:46:32 ## (For documentation only) 09:46:32 # Suggestion for strategies as to the minimum memory 09:46:32 # that they will use for calculating JVM settings (MB). 09:46:32 omero.jvmcfg.min_system_memory=3414 09:46:32 09:46:32 ## (For documentation only) 09:46:32 # Suggestion for strategies as to the maximum memory 09:46:32 # that they will use for calculating JVM settings (MB). 09:46:32 omero.jvmcfg.max_system_memory=48000 09:46:32 09:46:32 09:46:32 ############################################# 09:46:32 ## Logging properties 09:46:32 ## 09:46:32 ## Note: changes to the default omero.logging values in 09:46:32 ## this file will *not* be reflected in OMERO.server 09:46:32 ## since they are defined in OMERO.py 09:46:32 ############################################# 09:46:32 09:46:32 ## (For documentation only) 09:46:32 # Relative server directory where the log files should be stored. 09:46:32 omero.logging.directory=var/log/ 09:46:32 09:46:32 ## (For documentation only) 09:46:32 # Whether the server log files should be rotated at a certain time 09:46:32 # interval. If true, log files will be rolled over at midnight. 09:46:32 # Otherwise, log files will be rolled over at a predetermined size, 09:46:32 # see omero.logging.logsize for more information. 09:46:32 omero.logging.timedlog=false 09:46:32 09:46:32 ## (For documentation only) 09:46:32 # If omero.logging.timedlog is false or unset, specifies the 09:46:32 # maximum size of the server log files in bytes above which a 09:46:32 # new log file should be created. 09:46:32 omero.logging.logsize=5000000 09:46:32 09:46:32 ## (For documentation only) 09:46:32 # If omero.logging.timedlog is false or unset, specifies the 09:46:32 # number of old server log files that should be kept. Old log 09:46:32 # files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc. 09:46:32 omero.logging.lognum=9 09:46:32 09:46:32 ## (For documentation only) 09:46:32 # Specifies the threshold for the Python servers log files. Logging messages 09:46:32 # which are less severe than this value will be ignored. For a list of 09:46:32 # available values, see https://docs.python.org/3/library/logging.html#levels. 09:46:32 omero.logging.level=20 09:46:32 09:46:32 ############################################# 09:46:32 ## Ice overrides 09:46:32 ## 09:46:32 ## Though not used directly by OMERO, a number 09:46:32 ## of properties prefixed with "Ice.*" will 09:46:32 ## alter the behavior of the OMERO runtime 09:46:32 ## by configuring the Ice communicators. For a 09:46:32 ## full listing see: 09:46:32 ## 09:46:32 ## http://doc.zeroc.com/display/Ice/Property+Reference 09:46:32 ## For more information see 09:46:32 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start 09:46:32 ############################################# 09:46:32 09:46:32 # Disable IPv6 by setting to 0. Only needed in 09:46:32 # certain situations. 09:46:32 Ice.IPv6=1 09:46:32 09:46:32 # Glacier2Template IceSSL defaults and overrides, 09:46:32 # see https://archive.zeroc.com/ice/3.6/property-reference/icessl. 09:46:32 # Any property beginning ``omero.glacier2.IceSSL.`` will be used to 09:46:32 # update the corresponding IceSSL. property. 09:46:32 omero.glacier2.IceSSL= 09:46:32 09:46:32 # Glacier2Template SSL maximum allowed protocol (mac bug) 09:46:32 omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1 09:46:32 # Glacier2Template SSL allowed cipher suites 09:46:32 omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH 09:46:32 # Glacier2Template SSL verification requirements 09:46:32 omero.glacier2.IceSSL.VerifyPeer=0 09:46:32 # Glacier2Template SSL allowed protocols 09:46:32 omero.glacier2.IceSSL.Protocols=tls1 09:46:32 09:46:32 # Override the default set of OMERO services. 09:46:32 # For example, to run OMERO.server with Blitz and Tables only 09:46:32 # (i.e. disable Processor, DropBox, Indexer, PixelData) 09:46:32 # set this to ``master:Blitz-0,Tables-0``. 09:46:32 # Also use this to distribute OMERO services across multiple nodes, 09:46:32 # for example: 09:46:32 # ``master:Blitz-0,Tables-0 worker1:Processor-0``. 09:46:32 # See 09:46:32 # https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples 09:46:32 omero.server.nodedescriptors= 09:46:32 09:46:32 ############################################# 09:46:32 ## Darwin (OS X) specific defaults for templated configuration files only. 09:46:32 ## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this 09:46:32 ## file. 09:46:32 ## Do not set these properties in ``omero config``, instead set the original 09:46:32 ## ``xxx.yyy`` property 09:46:32 ############################################# 09:46:32 _omero.glacier2.IceSSL.Ciphers.darwin=(AES) 09:46:32 09:46:32 ## (For documentation only) 09:46:32 # Name of the Python module to use when starting the Tables service 09:46:32 omero.tables.module=runTables 09:46:32 09:46:32 ############################################# 09:46:32 ## Server product name for release artifacts 09:46:32 ############################################# 09:46:32 product.name=OMERO.server 09:46:32 09:46:32 ############################################# 09:46:32 ### Properties below this marker are ignored by 09:46:32 ### omero.install.config_parser.PropertyParser 09:46:32 ### END 09:46:32 09:46:32 ############################################# 09:46:32 ## Library versions 09:46:32 ############################################# 09:46:32 ## 09:46:32 versions.findbugs=1.2.1 09:46:32 versions.ice36=3.6.5 09:46:32 versions.ice36_lib=36 09:46:32 ## internal 09:46:32 versions.omeroshares36=3.6.3 09:46:32 versions.omeromock36=3.6.3 09:46:32 versions.icedb36=3.6.3 09:46:32 versions.ipython=1.2.1 09:46:32 09:46:32 versions.janino=2.5.10 09:46:32 09:46:32 versions.reportng=1.1.1 09:46:32 09:46:32 versions.testng=7.5 09:46:32 versions.velocity=1.4 09:46:32 09:46:32 versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE 09:46:32 versions.omero-scripts-url=${versions.omero-pypi} 09:46:32 09:46:32 ### 09:46:32 ### Appended Values 09:46:32 ### 09:46:32 09:46:32 ## Internal dependencies' 09:46:32 + echo '## 09:46:32 ## omero.properties 09:46:32 ## ---------------- 09:46:32 ## 09:46:32 ## DO NOT EDIT! 09:46:32 ## 09:46:32 ## 09:46:32 ## Any of these properties can be altered by using `omero config`. MODIFYING 09:46:32 ## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults 09:46:32 ## at compile time! 09:46:32 ## 09:46:32 ## For an overview of these properties, see 09:46:32 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html 09:46:32 ## 09:46:32 ## Properties marked with "DEVELOPMENT" should not be used in production. 09:46:32 09:46:32 # Comma separated list of Ice transports available to clients. The default 09:46:32 # value ("ssl,tcp") instructs Ice to open the ports specified by the 09:46:32 # omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl" 09:46:32 # will prevent all non-encrypted connections to the OMERO server. 09:46:32 # 09:46:32 # Additionally, there are two experimental values for using websockets: 09:46:32 # "ws" and "wss" for unencrypted and encrypted, respectively. The ports 09:46:32 # that are opened are controlled by the omero.ports.ws and omero.ports.wss 09:46:32 # properties. To enable all possible protocols use: "ssl,tcp,wss,ws". 09:46:32 # 09:46:32 # Note: When using websockets behind a web server like nginx, additional 09:46:32 # configuration may be needed. 09:46:32 omero.client.icetransports=ssl,tcp 09:46:32 09:46:32 # The prefix to apply to all port numbers (SSL, TCP, registry) used by the 09:46:32 # server 09:46:32 omero.ports.prefix= 09:46:32 09:46:32 # The Glacier2 SSL port number to use 09:46:32 omero.ports.ssl=4064 09:46:32 09:46:32 # The Glacier2 TCP port number to use (unencrypted) 09:46:32 omero.ports.tcp=4063 09:46:32 09:46:32 # The Glacier2 WSS port number to use 09:46:32 omero.ports.wss=4066 09:46:32 09:46:32 # The Glacier2 WS port number to use (unencrypted) 09:46:32 omero.ports.ws=4065 09:46:32 09:46:32 # The IceGrid registry port number to use 09:46:32 omero.ports.registry=4061 09:46:32 09:46:32 ############################################# 09:46:32 ## JVM configuration 09:46:32 ## 09:46:32 ## Note: changes to the omero.jvmcfg properties 09:46:32 ## will *not* be reflected in OMERO.server 09:46:32 ## since they are defined in OMERO.py. 09:46:32 ############################################# 09:46:32 ## (For documentation only) 09:46:32 # Memory strategy which will be used by default. 09:46:32 # Options include: percent, manual 09:46:32 omero.jvmcfg.strategy=percent 09:46:32 09:46:32 ## (For documentation only) 09:46:32 # Explicit value for the `-Xmx` argument, e.g. 09:46:32 # "1g" 09:46:32 omero.jvmcfg.heap_size= 09:46:32 09:46:32 ## (For documentation only) 09:46:32 # Explicit value for the MaxPermSize argument 09:46:32 # to the JVM, e.g. "500M". Ignored for Java8+ 09:46:32 omero.jvmcfg.perm_gen= 09:46:32 09:46:32 ## (For documentation only) 09:46:32 # Toggles on or off heap dumps on OOMs. Default is "off". 09:46:32 # The special value "tmp" will create the heap dumps in 09:46:32 # your temp directory. 09:46:32 omero.jvmcfg.heap_dump= 09:46:32 09:46:32 ## (For documentation only) 09:46:32 # Used only by the percent strategy. An integer between 0 09:46:32 # and 100 which is the percent of active memory that will 09:46:32 # be used by the service. 09:46:32 omero.jvmcfg.percent= 09:46:32 09:46:32 ## (For documentation only) 09:46:32 # Contains other parameters which should be passed to the 09:46:32 # JVM. The value of "append" is treated as if it were on 09:46:32 # the command line so will be separated on whitespace. 09:46:32 # For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would 09:46:32 # results in two new arguments. 09:46:32 # Note that when using `config set` from the command line 09:46:32 # one may need to give a prior `--` option to prevent a value 09:46:32 # starting with `-` from already being parsed as an option, 09:46:32 # and values may need quoting to prevent whitespace or other 09:46:32 # significant characters from being interpreted prematurely. 09:46:32 09:46:32 omero.jvmcfg.append= 09:46:32 09:46:32 ## (For documentation only) 09:46:32 # Manual override of the total system memory that 09:46:32 # OMERO will *think* is present on the local OS (MB). 09:46:32 # If unset, an attempt will be made to detect the actual 09:46:32 # amount: first by using the Python library `psutil` and 09:46:32 # if that is not installed, by running a Java tool. If 09:46:32 # neither works, 4.0GB is assumed. 09:46:32 omero.jvmcfg.system_memory= 09:46:32 09:46:32 ## (For documentation only) 09:46:32 # Suggestion for strategies as to the minimum memory 09:46:32 # that they will use for calculating JVM settings (MB). 09:46:32 omero.jvmcfg.min_system_memory=3414 09:46:32 09:46:32 ## (For documentation only) 09:46:32 # Suggestion for strategies as to the maximum memory 09:46:32 # that they will use for calculating JVM settings (MB). 09:46:32 omero.jvmcfg.max_system_memory=48000 09:46:32 09:46:32 09:46:32 ############################################# 09:46:32 ## Logging properties 09:46:32 ## 09:46:32 ## Note: changes to the default omero.logging values in 09:46:32 ## this file will *not* be reflected in OMERO.server 09:46:32 ## since they are defined in OMERO.py 09:46:32 ############################################# 09:46:32 09:46:32 ## (For documentation only) 09:46:32 # Relative server directory where the log files should be stored. 09:46:32 omero.logging.directory=var/log/ 09:46:32 09:46:32 ## (For documentation only) 09:46:32 # Whether the server log files should be rotated at a certain time 09:46:32 # interval. If true, log files will be rolled over at midnight. 09:46:32 # Otherwise, log files will be rolled over at a predetermined size, 09:46:32 # see omero.logging.logsize for more information. 09:46:32 omero.logging.timedlog=false 09:46:32 09:46:32 ## (For documentation only) 09:46:32 # If omero.logging.timedlog is false or unset, specifies the 09:46:32 # maximum size of the server log files in bytes above which a 09:46:32 # new log file should be created. 09:46:32 omero.logging.logsize=5000000 09:46:32 09:46:32 ## (For documentation only) 09:46:32 # If omero.logging.timedlog is false or unset, specifies the 09:46:32 # number of old server log files that should be kept. Old log 09:46:32 # files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc. 09:46:32 omero.logging.lognum=9 09:46:32 09:46:32 ## (For documentation only) 09:46:32 # Specifies the threshold for the Python servers log files. Logging messages 09:46:32 # which are less severe than this value will be ignored. For a list of 09:46:32 # available values, see https://docs.python.org/3/library/logging.html#levels. 09:46:32 omero.logging.level=20 09:46:32 09:46:32 ############################################# 09:46:32 ## Ice overrides 09:46:32 ## 09:46:32 ## Though not used directly by OMERO, a number 09:46:32 ## of properties prefixed with "Ice.*" will 09:46:32 ## alter the behavior of the OMERO runtime 09:46:32 ## by configuring the Ice communicators. For a 09:46:32 ## full listing see: 09:46:32 ## 09:46:32 ## http://doc.zeroc.com/display/Ice/Property+Reference 09:46:32 ## For more information see 09:46:32 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start 09:46:32 ############################################# 09:46:32 09:46:32 # Disable IPv6 by setting to 0. Only needed in 09:46:32 # certain situations. 09:46:32 Ice.IPv6=1 09:46:32 09:46:32 # Glacier2Template IceSSL defaults and overrides, 09:46:32 # see https://archive.zeroc.com/ice/3.6/property-reference/icessl. 09:46:32 # Any property beginning ``omero.glacier2.IceSSL.`` will be used to 09:46:32 # update the corresponding IceSSL. property. 09:46:32 omero.glacier2.IceSSL= 09:46:32 09:46:32 # Glacier2Template SSL maximum allowed protocol (mac bug) 09:46:32 omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1 09:46:32 # Glacier2Template SSL allowed cipher suites 09:46:32 omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH 09:46:32 # Glacier2Template SSL verification requirements 09:46:32 omero.glacier2.IceSSL.VerifyPeer=0 09:46:32 # Glacier2Template SSL allowed protocols 09:46:32 omero.glacier2.IceSSL.Protocols=tls1 09:46:32 09:46:32 # Override the default set of OMERO services. 09:46:32 # For example, to run OMERO.server with Blitz and Tables only 09:46:32 # (i.e. disable Processor, DropBox, Indexer, PixelData) 09:46:32 # set this to ``master:Blitz-0,Tables-0``. 09:46:32 # Also use this to distribute OMERO services across multiple nodes, 09:46:32 # for example: 09:46:32 # ``master:Blitz-0,Tables-0 worker1:Processor-0``. 09:46:32 # See 09:46:32 # https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples 09:46:32 omero.server.nodedescriptors= 09:46:32 09:46:32 ############################################# 09:46:32 ## Darwin (OS X) specific defaults for templated configuration files only. 09:46:32 ## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this 09:46:32 ## file. 09:46:32 ## Do not set these properties in ``omero config``, instead set the original 09:46:32 ## ``xxx.yyy`` property 09:46:32 ############################################# 09:46:32 _omero.glacier2.IceSSL.Ciphers.darwin=(AES) 09:46:32 09:46:32 ## (For documentation only) 09:46:32 # Name of the Python module to use when starting the Tables service 09:46:32 omero.tables.module=runTables 09:46:32 09:46:32 ############################################# 09:46:32 ## Server product name for release artifacts 09:46:32 ############################################# 09:46:32 product.name=OMERO.server 09:46:32 09:46:32 ############################################# 09:46:32 ### Properties below this marker are ignored by 09:46:32 ### omero.install.config_parser.PropertyParser 09:46:32 ### END 09:46:32 09:46:32 ############################################# 09:46:32 ## Library versions 09:46:32 ############################################# 09:46:32 ## 09:46:32 versions.findbugs=1.2.1 09:46:32 versions.ice36=3.6.5 09:46:32 versions.ice36_lib=36 09:46:32 ## internal 09:46:32 versions.omeroshares36=3.6.3 09:46:32 versions.omeromock36=3.6.3 09:46:32 versions.icedb36=3.6.3 09:46:32 versions.ipython=1.2.1 09:46:32 09:46:32 versions.janino=2.5.10 09:46:32 09:46:32 versions.reportng=1.1.1 09:46:32 09:46:32 versions.testng=7.5 09:46:32 versions.velocity=1.4 09:46:32 09:46:32 versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE 09:46:32 versions.omero-scripts-url=${versions.omero-pypi} 09:46:32 09:46:32 ### 09:46:32 ### Appended Values 09:46:32 ### 09:46:32 09:46:32 ## Internal dependencies' 09:46:32 + echo versions.omero-pypi=https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/ 09:46:32 + echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive 09:46:32 + echo versions.scripts-prefix= 09:46:32 + echo versions.scripts=merge_ci 09:46:32 ++ curl -fsSL https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-zarr-pixel-buffer-push/lastSuccessfulBuild/artifact/build/version.tsv 09:46:32 ++ cut -f3 09:46:32 + OZPB_VERSION=0.7.2-SNAPSHOT 09:46:32 + echo versions.omero-zarr-pixel-buffer=0.7.2-SNAPSHOT 09:46:32 + cat /home/omero/workspace/OMERO-push/version.properties 09:46:32 + git commit -a -m 'Add version.properties to etc/omero.properties' 09:46:32 [detached HEAD 47c61a9919] Add version.properties to etc/omero.properties 09:46:32 1 file changed, 47 insertions(+), 6 deletions(-) 09:46:32 + git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci 09:46:36 To github.com:snoopycrimecop/openmicroscopy.git 09:46:36 + e8268b73c6...47c61a9919 HEAD -> merge_ci (forced update) 09:46:36 Finished: SUCCESS