00:51:49 Started by upstream project "Trigger" build number 108
00:51:49 originally caused by:
00:51:49 Started by timer
00:51:49 Running as SYSTEM
00:51:50 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
00:51:51 [OMERO-server] $ /bin/bash -xe /tmp/jenkins6101704796713737597.sh
00:51:51 + source /home/settings.env
00:51:51 ++ OMERO_DB_HOST=pg
00:51:51 ++ OMERO_DB_USER=postgres
00:51:51 ++ OMERO_DB_PASS=
00:51:51 ++ OMERO_ROOT_PASS=omero
00:51:51 ++ OMERO_DATA_DIR=/OMERO
00:51:51 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:51:51 + OMERO_DB_NAME=OMERO-server
00:51:51 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:51:51 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:51:51 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:51:51 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:51:51 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
00:51:51 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:51:51 ++ deactivate nondestructive
00:51:51 ++ '[' -n '' ']'
00:51:51 ++ '[' -n '' ']'
00:51:51 ++ hash -r
00:51:51 ++ '[' -n '' ']'
00:51:51 ++ unset VIRTUAL_ENV
00:51:51 ++ unset VIRTUAL_ENV_PROMPT
00:51:51 ++ '[' '!' nondestructive = nondestructive ']'
00:51:51 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:51:51 ++ export VIRTUAL_ENV
00:51:51 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:51:51 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:51:51 ++ export PATH
00:51:51 ++ '[' -n '' ']'
00:51:51 ++ '[' -z '' ']'
00:51:51 ++ _OLD_VIRTUAL_PS1=
00:51:51 ++ PS1='(.venv3) '
00:51:51 ++ export PS1
00:51:51 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:51:51 ++ export VIRTUAL_ENV_PROMPT
00:51:51 ++ hash -r
00:51:51 + omero admin stop
00:52:31 Server not running
00:52:31 + echo not running
00:52:31 not running
00:52:31 + sleep 5
00:52:36 + deactivate
00:52:36 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:52:36 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:52:36 + export PATH
00:52:36 + unset _OLD_VIRTUAL_PATH
00:52:36 + '[' -n '' ']'
00:52:36 + hash -r
00:52:36 + '[' -n '' ']'
00:52:36 + unset VIRTUAL_ENV
00:52:36 + unset VIRTUAL_ENV_PROMPT
00:52:36 + '[' '!' '' = nondestructive ']'
00:52:36 + unset -f deactivate
00:52:36 + rm -rf /home/omero/workspace/OMERO-server/.venv3
00:52:37 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
00:52:41 + '[' false = true ']'
00:52:41 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
00:52:41 Skipping PURGE_DATA:CleanDbAndRepo
00:52:41 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.5-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.22.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.31.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
00:52:44 Copied 1 artifact from "OMERO-build" build number 83
00:52:44 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 79
00:52:44 Copied 2 artifacts from "OMERO-build-build" build number 83
00:52:44 Copied 1 artifact from "OMERO-zarr-pixel-buffer-build" build number 77
00:52:44 [OMERO-server] $ /bin/bash -xe /tmp/jenkins98819436251217233.sh
00:52:44 + source /home/settings.env
00:52:44 ++ OMERO_DB_HOST=pg
00:52:44 ++ OMERO_DB_USER=postgres
00:52:44 ++ OMERO_DB_PASS=
00:52:44 ++ OMERO_ROOT_PASS=omero
00:52:44 ++ OMERO_DATA_DIR=/OMERO
00:52:44 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:52:44 + OMERO_DB_NAME=OMERO-server
00:52:44 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:52:44 + mkdir -p /home/omero/omero-server-data
00:52:44 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:52:44 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:52:44 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:52:44 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:52:44 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:52:44 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:52:44 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:52:44 ++ ls OMERO.server-5.6.3-594-d1dbc52077-ice36-b83.zip
00:52:44 + ZIP=OMERO.server-5.6.3-594-d1dbc52077-ice36-b83.zip
00:52:44 + '[' '!' -z '' ']'
00:52:44 + DIST=OMERO.server-5.6.3-594-d1dbc52077-ice36-b83
00:52:44 + unzip OMERO.server-5.6.3-594-d1dbc52077-ice36-b83.zip
00:52:44 Archive: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83.zip
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/etc/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/etc/blitz/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/etc/grid/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/etc/profiles/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/etc/templates/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/etc/templates/error/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/etc/templates/grid/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/client/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/scripts/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/scripts/luts/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/scripts/luts/janelia/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/scripts/luts/matplotlib/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/scripts/luts/ncsa_paledit/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/scripts/luts/seaborn/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/scripts/luts/wcif/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/scripts/omero/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/scripts/omero/analysis_scripts/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/scripts/omero/annotation_scripts/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/scripts/omero/export_scripts/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/scripts/omero/figure_scripts/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/scripts/omero/import_scripts/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/scripts/omero/util_scripts/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/server/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/share/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/share/licenses/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/sql/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/sql/misc/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/sql/psql/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/sql/psql/OMERO3A__1/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/sql/psql/OMERO3A__10/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/sql/psql/OMERO3A__11/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/sql/psql/OMERO3A__2/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/sql/psql/OMERO3A__3/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/sql/psql/OMERO3A__4/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/sql/psql/OMERO3A__5/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/sql/psql/OMERO3A__6/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/sql/psql/OMERO3A__7/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/sql/psql/OMERO3A__8/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/sql/psql/OMERO3A__9/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/sql/psql/OMERO3__4/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/sql/psql/OMERO3__5/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/sql/psql/OMERO3__6/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/sql/psql/OMERO3__7/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/sql/psql/OMERO4.1__0/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/sql/psql/OMERO4.2__0/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/sql/psql/OMERO4.2__0/t/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/sql/psql/OMERO4.3__0/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/sql/psql/OMERO4.4__0/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/sql/psql/OMERO4__0/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/sql/psql/OMERO5.0__0/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/sql/psql/OMERO5.1__1/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/sql/psql/OMERO5.2__0/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/sql/psql/OMERO5.3__0/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/sql/psql/OMERO5.4DEV__1/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/sql/psql/OMERO5.4DEV__2/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/sql/psql/OMERO5.4DEV__3/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/sql/psql/OMERO5.4__0/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/var/
00:52:44 creating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/var/tmp/
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/LICENSE.txt
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/etc/backup.cfg
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/etc/blitz/mail-senders.example
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/etc/blitz/mail-server.example
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/etc/build.properties
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/etc/env.bat
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/etc/env.sh
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/etc/hibernate.properties
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/etc/ice.config
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/etc/logback-cli.xml
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/etc/logback-indexing-cli.xml
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/etc/logback-indexing.xml
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/etc/logback.xml
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/etc/mime.types
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/etc/node1.cfg
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/etc/node2.cfg
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/etc/omero.properties
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/etc/profiles/psql
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/etc/rollover.cfg
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/etc/templates/Windows.cfg
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/etc/templates/error/maintainance.html
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/etc/templates/grid/README
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/etc/templates/grid/default.xml
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/etc/templates/grid/templates.xml
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/etc/templates/grid/windefault.xml
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/etc/templates/ice.config
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/etc/templates/internal.cfg
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/etc/templates/master.cfg
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/etc/templates/robot.template
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/etc/testdropbox.config
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/history.rst
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/client/OMEZarrReader.jar
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/client/accessors-smart.jar
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/client/activation.jar
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/client/aggdesigner-algorithm.jar
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/client/aircompressor.jar
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/client/antlr.jar
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/client/aopalliance.jar
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/client/apiguardian-api.jar
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/client/asm.jar
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/client/avatica-core.jar
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/client/avatica-metrics.jar
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/client/aws-java-sdk-core.jar
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/client/aws-java-sdk-kms.jar
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/client/aws-java-sdk-s3.jar
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/client/base.jar
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/client/batik-anim.jar
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/client/batik-awt-util.jar
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/client/batik-bridge.jar
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/client/batik-codec.jar
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/client/batik-constants.jar
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/client/batik-css.jar
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/client/batik-dom.jar
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/client/batik-ext.jar
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/client/batik-gvt.jar
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/client/batik-i18n.jar
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/client/batik-parser.jar
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/client/batik-script.jar
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/client/batik-shared-resources.jar
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/client/batik-svg-dom.jar
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/client/batik-svggen.jar
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/client/batik-transcoder.jar
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/client/batik-util.jar
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/client/batik-xml.jar
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/client/btm.jar
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/client/calcite-core.jar
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/client/calcite-linq4j.jar
00:52:44 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/client/cdm-core.jar
00:52:45 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/client/checker-qual.jar
00:52:45 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/client/commons-beanutils.jar
00:52:45 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/client/commons-codec.jar
00:52:45 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/lib/client/commons-collections.jar
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00:52:47 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
00:52:47 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
00:52:47 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/sql/psql/OMERO5.4__0/psql-footer.sql
00:52:47 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/sql/psql/OMERO5.4__0/psql-header.sql
00:52:47 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/sql/psql/OMERO5.4__0/schema.sql
00:52:47 inflating: OMERO.server-5.6.3-594-d1dbc52077-ice36-b83/sql/psql/OMERO5.4__0/views.sql
00:52:47 + rm -f OMERO.server-5.6.3-594-d1dbc52077-ice36-b83.zip
00:52:47 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-594-d1dbc52077-ice36-b83 /home/omero/workspace/OMERO-server/OMERO.server
00:52:47 + jacksonVersion=2.20.0
00:52:47 + awsSdkVersion=2.34.6
00:52:47 + reactiveStreamsVersion=1.0.4
00:52:47 + zarrJavaVersion=0.1.0
00:52:47 + rm -f '/home/omero/workspace/OMERO-server/OMERO.server/lib/server/omero-zarr-pixel-buffer*.jar' '/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine*.jar' /home/omero/workspace/OMERO-server/OMERO.server/lib/server/jzarr.jar '/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3fs*.jar' /home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-core.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-kms.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3.jar
00:52:47 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
00:52:47 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:47 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:47 --2026-03-18 00:52:47-- https://repo.maven.apache.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
00:52:48 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:52:48 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.18.12|:443... connected.
00:52:48 HTTP request sent, awaiting response... 200 OK
00:52:48 Length: 889211 (868K) [application/java-archive]
00:52:48 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’
00:52:48
00:52:48 0K .......... .......... .......... .......... .......... 5% 14.9M 0s
00:52:48 50K .......... .......... .......... .......... .......... 11% 3.24M 0s
00:52:48 100K .......... .......... .......... .......... .......... 17% 10.7M 0s
00:52:48 150K .......... .......... .......... .......... .......... 23% 3.82M 0s
00:52:48 200K .......... .......... .......... .......... .......... 28% 17.0M 0s
00:52:48 250K .......... .......... .......... .......... .......... 34% 10.7M 0s
00:52:48 300K .......... .......... .......... .......... .......... 40% 14.0M 0s
00:52:48 350K .......... .......... .......... .......... .......... 46% 12.8M 0s
00:52:48 400K .......... .......... .......... .......... .......... 51% 18.2M 0s
00:52:48 450K .......... .......... .......... .......... .......... 57% 14.1M 0s
00:52:48 500K .......... .......... .......... .......... .......... 63% 13.5M 0s
00:52:48 550K .......... .......... .......... .......... .......... 69% 14.2M 0s
00:52:48 600K .......... .......... .......... .......... .......... 74% 13.2M 0s
00:52:48 650K .......... .......... .......... .......... .......... 80% 23.8M 0s
00:52:48 700K .......... .......... .......... .......... .......... 86% 26.6M 0s
00:52:48 750K .......... .......... .......... .......... .......... 92% 11.3M 0s
00:52:48 800K .......... .......... .......... .......... .......... 97% 16.4M 0s
00:52:48 850K .......... ........ 100% 13.6M=0.08s
00:52:48
00:52:48 2026-03-18 00:52:48 (10.6 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’ saved [889211/889211]
00:52:48
00:52:48 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/dev/zarr/zarr-java/0.1.0/zarr-java-0.1.0.jar
00:52:48 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:48 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:48 --2026-03-18 00:52:48-- https://repo.maven.apache.org/maven2/dev/zarr/zarr-java/0.1.0/zarr-java-0.1.0.jar
00:52:48 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:52:48 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
00:52:48 HTTP request sent, awaiting response... 200 OK
00:52:49 Length: 183560 (179K) [application/java-archive]
00:52:49 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zarr-java-0.1.0.jar’
00:52:49
00:52:49 0K .......... .......... .......... .......... .......... 27% 779K 0s
00:52:49 50K .......... .......... .......... .......... .......... 55% 445K 0s
00:52:49 100K .......... .......... .......... .......... .......... 83% 1019K 0s
00:52:49 150K .......... .......... ......... 100% 1.52M=0.2s
00:52:49
00:52:49 2026-03-18 00:52:49 (734 KB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zarr-java-0.1.0.jar’ saved [183560/183560]
00:52:49
00:52:49 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/scalableminds/blosc-java/0.1-1.21.4/blosc-java-0.1-1.21.4.jar
00:52:49 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:49 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:49 --2026-03-18 00:52:49-- https://repo1.maven.org/maven2/com/scalableminds/blosc-java/0.1-1.21.4/blosc-java-0.1-1.21.4.jar
00:52:49 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:52:49 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:52:49 HTTP request sent, awaiting response... 200 OK
00:52:49 Length: 1732435 (1.7M) [application/java-archive]
00:52:49 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/blosc-java-0.1-1.21.4.jar’
00:52:49
00:52:49 0K .......... .......... .......... .......... .......... 2% 13.7M 0s
00:52:49 50K .......... .......... .......... .......... .......... 5% 3.32M 0s
00:52:49 100K .......... .......... .......... .......... .......... 8% 19.7M 0s
00:52:49 150K .......... .......... .......... .......... .......... 11% 4.07M 0s
00:52:49 200K .......... .......... .......... .......... .......... 14% 7.67M 0s
00:52:49 250K .......... .......... .......... .......... .......... 17% 16.3M 0s
00:52:49 300K .......... .......... .......... .......... .......... 20% 13.1M 0s
00:52:49 350K .......... .......... .......... .......... .......... 23% 17.6M 0s
00:52:49 400K .......... .......... .......... .......... .......... 26% 41.1M 0s
00:52:49 450K .......... .......... .......... .......... .......... 29% 53.0M 0s
00:52:49 500K .......... .......... .......... .......... .......... 32% 7.07M 0s
00:52:49 550K .......... .......... .......... .......... .......... 35% 11.1M 0s
00:52:49 600K .......... .......... .......... .......... .......... 38% 15.5M 0s
00:52:49 650K .......... .......... .......... .......... .......... 41% 60.0M 0s
00:52:49 700K .......... .......... .......... .......... .......... 44% 7.65M 0s
00:52:49 750K .......... .......... .......... .......... .......... 47% 15.7M 0s
00:52:49 800K .......... .......... .......... .......... .......... 50% 13.2M 0s
00:52:49 850K .......... .......... .......... .......... .......... 53% 21.5M 0s
00:52:49 900K .......... .......... .......... .......... .......... 56% 263M 0s
00:52:49 950K .......... .......... .......... .......... .......... 59% 7.04M 0s
00:52:49 1000K .......... .......... .......... .......... .......... 62% 16.1M 0s
00:52:49 1050K .......... .......... .......... .......... .......... 65% 12.2M 0s
00:52:49 1100K .......... .......... .......... .......... .......... 67% 23.5M 0s
00:52:49 1150K .......... .......... .......... .......... .......... 70% 50.9M 0s
00:52:49 1200K .......... .......... .......... .......... .......... 73% 7.93M 0s
00:52:49 1250K .......... .......... .......... .......... .......... 76% 16.2M 0s
00:52:49 1300K .......... .......... .......... .......... .......... 79% 12.2M 0s
00:52:49 1350K .......... .......... .......... .......... .......... 82% 24.0M 0s
00:52:49 1400K .......... .......... .......... .......... .......... 85% 47.4M 0s
00:52:49 1450K .......... .......... .......... .......... .......... 88% 56.9M 0s
00:52:49 1500K .......... .......... .......... .......... .......... 91% 7.45M 0s
00:52:49 1550K .......... .......... .......... .......... .......... 94% 8.53M 0s
00:52:49 1600K .......... .......... .......... .......... .......... 97% 13.2M 0s
00:52:49 1650K .......... .......... .......... .......... . 100% 20.8M=0.1s
00:52:49
00:52:49 2026-03-18 00:52:49 (12.4 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/blosc-java-0.1-1.21.4.jar’ saved [1732435/1732435]
00:52:49
00:52:49 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/squareup/okhttp/okhttp/2.7.5/okhttp-2.7.5.jar
00:52:49 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:49 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:49 --2026-03-18 00:52:49-- https://repo1.maven.org/maven2/com/squareup/okhttp/okhttp/2.7.5/okhttp-2.7.5.jar
00:52:50 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:52:50 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:52:50 HTTP request sent, awaiting response... 200 OK
00:52:50 Length: 331034 (323K) [application/java-archive]
00:52:50 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/okhttp-2.7.5.jar’
00:52:50
00:52:50 0K .......... .......... .......... .......... .......... 15% 15.2M 0s
00:52:50 50K .......... .......... .......... .......... .......... 30% 3.13M 0s
00:52:50 100K .......... .......... .......... .......... .......... 46% 12.7M 0s
00:52:50 150K .......... .......... .......... .......... .......... 61% 4.06M 0s
00:52:50 200K .......... .......... .......... .......... .......... 77% 13.5M 0s
00:52:50 250K .......... .......... .......... .......... .......... 92% 10.9M 0s
00:52:50 300K .......... .......... ... 100% 22.4M=0.04s
00:52:50
00:52:50 2026-03-18 00:52:50 (7.21 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/okhttp-2.7.5.jar’ saved [331034/331034]
00:52:50
00:52:50 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/datatype/jackson-datatype-jdk8/2.20.0/jackson-datatype-jdk8-2.20.0.jar
00:52:50 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:50 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:50 --2026-03-18 00:52:50-- https://repo1.maven.org/maven2/com/fasterxml/jackson/datatype/jackson-datatype-jdk8/2.20.0/jackson-datatype-jdk8-2.20.0.jar
00:52:50 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:52:50 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:52:50 HTTP request sent, awaiting response... 200 OK
00:52:50 Length: 36400 (36K) [application/java-archive]
00:52:50 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-datatype-jdk8-2.20.0.jar’
00:52:50
00:52:50 0K .......... .......... .......... ..... 100% 15.7M=0.002s
00:52:50
00:52:50 2026-03-18 00:52:50 (15.7 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-datatype-jdk8-2.20.0.jar’ saved [36400/36400]
00:52:50
00:52:50 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/s3/2.34.6/s3-2.34.6.jar
00:52:50 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:50 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:50 --2026-03-18 00:52:50-- https://repo1.maven.org/maven2/software/amazon/awssdk/s3/2.34.6/s3-2.34.6.jar
00:52:50 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:52:50 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:52:50 HTTP request sent, awaiting response... 200 OK
00:52:51 Length: 4083366 (3.9M) [application/java-archive]
00:52:51 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3-2.34.6.jar’
00:52:51
00:52:51 0K .......... .......... .......... .......... .......... 1% 3.77M 1s
00:52:51 50K .......... .......... .......... .......... .......... 2% 5.57M 1s
00:52:51 100K .......... .......... .......... .......... .......... 3% 4.72M 1s
00:52:51 150K .......... .......... .......... .......... .......... 5% 12.5M 1s
00:52:51 200K .......... .......... .......... .......... .......... 6% 14.8M 1s
00:52:51 250K .......... .......... .......... .......... .......... 7% 8.35M 1s
00:52:51 300K .......... .......... .......... .......... .......... 8% 17.6M 0s
00:52:51 350K .......... .......... .......... .......... .......... 10% 15.0M 0s
00:52:51 400K .......... .......... .......... .......... .......... 11% 20.1M 0s
00:52:51 450K .......... .......... .......... .......... .......... 12% 12.2M 0s
00:52:51 500K .......... .......... .......... .......... .......... 13% 9.88M 0s
00:52:51 550K .......... .......... .......... .......... .......... 15% 10.9M 0s
00:52:51 600K .......... .......... .......... .......... .......... 16% 9.63M 0s
00:52:51 650K .......... .......... .......... .......... .......... 17% 9.43M 0s
00:52:51 700K .......... .......... .......... .......... .......... 18% 11.0M 0s
00:52:51 750K .......... .......... .......... .......... .......... 20% 11.5M 0s
00:52:51 800K .......... .......... .......... .......... .......... 21% 11.3M 0s
00:52:51 850K .......... .......... .......... .......... .......... 22% 12.0M 0s
00:52:51 900K .......... .......... .......... .......... .......... 23% 8.73M 0s
00:52:51 950K .......... .......... .......... .......... .......... 25% 9.43M 0s
00:52:51 1000K .......... .......... .......... .......... .......... 26% 11.0M 0s
00:52:51 1050K .......... .......... .......... .......... .......... 27% 12.1M 0s
00:52:51 1100K .......... .......... .......... .......... .......... 28% 10.9M 0s
00:52:51 1150K .......... .......... .......... .......... .......... 30% 8.42M 0s
00:52:51 1200K .......... .......... .......... .......... .......... 31% 9.59M 0s
00:52:51 1250K .......... .......... .......... .......... .......... 32% 11.3M 0s
00:52:51 1300K .......... .......... .......... .......... .......... 33% 11.8M 0s
00:52:51 1350K .......... .......... .......... .......... .......... 35% 10.7M 0s
00:52:51 1400K .......... .......... .......... .......... .......... 36% 10.7M 0s
00:52:51 1450K .......... .......... .......... .......... .......... 37% 9.70M 0s
00:52:51 1500K .......... .......... .......... .......... .......... 38% 11.8M 0s
00:52:51 1550K .......... .......... .......... .......... .......... 40% 11.6M 0s
00:52:51 1600K .......... .......... .......... .......... .......... 41% 8.19M 0s
00:52:51 1650K .......... .......... .......... .......... .......... 42% 11.8M 0s
00:52:51 1700K .......... .......... .......... .......... .......... 43% 10.8M 0s
00:52:51 1750K .......... .......... .......... .......... .......... 45% 9.18M 0s
00:52:51 1800K .......... .......... .......... .......... .......... 46% 11.8M 0s
00:52:51 1850K .......... .......... .......... .......... .......... 47% 10.3M 0s
00:52:51 1900K .......... .......... .......... .......... .......... 48% 12.3M 0s
00:52:51 1950K .......... .......... .......... .......... .......... 50% 9.40M 0s
00:52:51 2000K .......... .......... .......... .......... .......... 51% 7.91M 0s
00:52:51 2050K .......... .......... .......... .......... .......... 52% 11.4M 0s
00:52:51 2100K .......... .......... .......... .......... .......... 53% 12.3M 0s
00:52:51 2150K .......... .......... .......... .......... .......... 55% 11.0M 0s
00:52:51 2200K .......... .......... .......... .......... .......... 56% 11.1M 0s
00:52:51 2250K .......... .......... .......... .......... .......... 57% 9.59M 0s
00:52:51 2300K .......... .......... .......... .......... .......... 58% 10.6M 0s
00:52:51 2350K .......... .......... .......... .......... .......... 60% 11.3M 0s
00:52:51 2400K .......... .......... .......... .......... .......... 61% 8.85M 0s
00:52:51 2450K .......... .......... .......... .......... .......... 62% 12.9M 0s
00:52:51 2500K .......... .......... .......... .......... .......... 63% 10.5M 0s
00:52:51 2550K .......... .......... .......... .......... .......... 65% 13.7M 0s
00:52:51 2600K .......... .......... .......... .......... .......... 66% 12.6M 0s
00:52:51 2650K .......... .......... .......... .......... .......... 67% 11.5M 0s
00:52:51 2700K .......... .......... .......... .......... .......... 68% 15.3M 0s
00:52:51 2750K .......... .......... .......... .......... .......... 70% 13.4M 0s
00:52:51 2800K .......... .......... .......... .......... .......... 71% 10.6M 0s
00:52:51 2850K .......... .......... .......... .......... .......... 72% 11.4M 0s
00:52:51 2900K .......... .......... .......... .......... .......... 73% 18.9M 0s
00:52:51 2950K .......... .......... .......... .......... .......... 75% 29.6M 0s
00:52:51 3000K .......... .......... .......... .......... .......... 76% 12.7M 0s
00:52:51 3050K .......... .......... .......... .......... .......... 77% 10.7M 0s
00:52:51 3100K .......... .......... .......... .......... .......... 78% 12.0M 0s
00:52:51 3150K .......... .......... .......... .......... .......... 80% 22.5M 0s
00:52:51 3200K .......... .......... .......... .......... .......... 81% 23.8M 0s
00:52:51 3250K .......... .......... .......... .......... .......... 82% 14.0M 0s
00:52:51 3300K .......... .......... .......... .......... .......... 84% 11.0M 0s
00:52:51 3350K .......... .......... .......... .......... .......... 85% 10.0M 0s
00:52:51 3400K .......... .......... .......... .......... .......... 86% 35.3M 0s
00:52:51 3450K .......... .......... .......... .......... .......... 87% 19.6M 0s
00:52:51 3500K .......... .......... .......... .......... .......... 89% 18.2M 0s
00:52:51 3550K .......... .......... .......... .......... .......... 90% 13.8M 0s
00:52:51 3600K .......... .......... .......... .......... .......... 91% 7.91M 0s
00:52:51 3650K .......... .......... .......... .......... .......... 92% 34.7M 0s
00:52:51 3700K .......... .......... .......... .......... .......... 94% 20.6M 0s
00:52:51 3750K .......... .......... .......... .......... .......... 95% 18.2M 0s
00:52:51 3800K .......... .......... .......... .......... .......... 96% 13.2M 0s
00:52:51 3850K .......... .......... .......... .......... .......... 97% 13.4M 0s
00:52:51 3900K .......... .......... .......... .......... .......... 99% 17.8M 0s
00:52:51 3950K .......... .......... .......... ....... 100% 10.3M=0.3s
00:52:51
00:52:51 2026-03-18 00:52:51 (11.2 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3-2.34.6.jar’ saved [4083366/4083366]
00:52:51
00:52:51 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/auth/2.34.6/auth-2.34.6.jar
00:52:51 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:51 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:51 --2026-03-18 00:52:51-- https://repo1.maven.org/maven2/software/amazon/awssdk/auth/2.34.6/auth-2.34.6.jar
00:52:51 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:52:51 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:52:51 HTTP request sent, awaiting response... 200 OK
00:52:51 Length: 234962 (229K) [application/java-archive]
00:52:51 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/auth-2.34.6.jar’
00:52:51
00:52:51 0K .......... .......... .......... .......... .......... 21% 13.1M 0s
00:52:51 50K .......... .......... .......... .......... .......... 43% 3.33M 0s
00:52:51 100K .......... .......... .......... .......... .......... 65% 11.7M 0s
00:52:51 150K .......... .......... .......... .......... .......... 87% 4.05M 0s
00:52:51 200K .......... .......... ......... 100% 15.2M=0.04s
00:52:51
00:52:51 2026-03-18 00:52:51 (6.14 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/auth-2.34.6.jar’ saved [234962/234962]
00:52:51
00:52:51 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/aws-core/2.34.6/aws-core-2.34.6.jar
00:52:51 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:51 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:51 --2026-03-18 00:52:51-- https://repo1.maven.org/maven2/software/amazon/awssdk/aws-core/2.34.6/aws-core-2.34.6.jar
00:52:51 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:52:51 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:52:52 HTTP request sent, awaiting response... 200 OK
00:52:52 Length: 192161 (188K) [application/java-archive]
00:52:52 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-core-2.34.6.jar’
00:52:52
00:52:52 0K .......... .......... .......... .......... .......... 26% 15.6M 0s
00:52:52 50K .......... .......... .......... .......... .......... 53% 3.24M 0s
00:52:52 100K .......... .......... .......... .......... .......... 79% 3.46M 0s
00:52:52 150K .......... .......... .......... ....... 100% 19.4M=0.03s
00:52:52
00:52:52 2026-03-18 00:52:52 (5.36 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-core-2.34.6.jar’ saved [192161/192161]
00:52:52
00:52:52 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/sdk-core/2.34.6/sdk-core-2.34.6.jar
00:52:52 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:52 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:52 --2026-03-18 00:52:52-- https://repo1.maven.org/maven2/software/amazon/awssdk/sdk-core/2.34.6/sdk-core-2.34.6.jar
00:52:52 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:52:52 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:52:52 HTTP request sent, awaiting response... 200 OK
00:52:52 Length: 1037104 (1013K) [application/java-archive]
00:52:52 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/sdk-core-2.34.6.jar’
00:52:52
00:52:52 0K .......... .......... .......... .......... .......... 4% 10.3M 0s
00:52:52 50K .......... .......... .......... .......... .......... 9% 3.35M 0s
00:52:52 100K .......... .......... .......... .......... .......... 14% 10.6M 0s
00:52:52 150K .......... .......... .......... .......... .......... 19% 4.06M 0s
00:52:52 200K .......... .......... .......... .......... .......... 24% 12.6M 0s
00:52:52 250K .......... .......... .......... .......... .......... 29% 13.2M 0s
00:52:52 300K .......... .......... .......... .......... .......... 34% 17.3M 0s
00:52:52 350K .......... .......... .......... .......... .......... 39% 13.4M 0s
00:52:52 400K .......... .......... .......... .......... .......... 44% 15.0M 0s
00:52:52 450K .......... .......... .......... .......... .......... 49% 16.8M 0s
00:52:52 500K .......... .......... .......... .......... .......... 54% 11.0M 0s
00:52:52 550K .......... .......... .......... .......... .......... 59% 16.9M 0s
00:52:52 600K .......... .......... .......... .......... .......... 64% 18.3M 0s
00:52:52 650K .......... .......... .......... .......... .......... 69% 81.0M 0s
00:52:52 700K .......... .......... .......... .......... .......... 74% 8.65M 0s
00:52:52 750K .......... .......... .......... .......... .......... 78% 10.6M 0s
00:52:52 800K .......... .......... .......... .......... .......... 83% 17.3M 0s
00:52:52 850K .......... .......... .......... .......... .......... 88% 15.9M 0s
00:52:52 900K .......... .......... .......... .......... .......... 93% 266M 0s
00:52:52 950K .......... .......... .......... .......... .......... 98% 6.80M 0s
00:52:52 1000K .......... .. 100% 301M=0.09s
00:52:52
00:52:52 2026-03-18 00:52:52 (11.0 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/sdk-core-2.34.6.jar’ saved [1037104/1037104]
00:52:52
00:52:52 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/annotations/2.34.6/annotations-2.34.6.jar
00:52:52 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:52 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:52 --2026-03-18 00:52:52-- https://repo1.maven.org/maven2/software/amazon/awssdk/annotations/2.34.6/annotations-2.34.6.jar
00:52:52 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:52:52 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:52:52 HTTP request sent, awaiting response... 200 OK
00:52:52 Length: 13758 (13K) [application/java-archive]
00:52:52 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/annotations-2.34.6.jar’
00:52:52
00:52:52 0K .......... ... 100% 31.3M=0s
00:52:52
00:52:52 2026-03-18 00:52:52 (31.3 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/annotations-2.34.6.jar’ saved [13758/13758]
00:52:52
00:52:52 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/regions/2.34.6/regions-2.34.6.jar
00:52:52 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:52 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:52 --2026-03-18 00:52:52-- https://repo1.maven.org/maven2/software/amazon/awssdk/regions/2.34.6/regions-2.34.6.jar
00:52:52 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:52:52 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:52:53 HTTP request sent, awaiting response... 200 OK
00:52:53 Length: 962220 (940K) [application/java-archive]
00:52:53 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/regions-2.34.6.jar’
00:52:53
00:52:53 0K .......... .......... .......... .......... .......... 5% 14.2M 0s
00:52:53 50K .......... .......... .......... .......... .......... 10% 3.23M 0s
00:52:53 100K .......... .......... .......... .......... .......... 15% 10.9M 0s
00:52:53 150K .......... .......... .......... .......... .......... 21% 4.29M 0s
00:52:53 200K .......... .......... .......... .......... .......... 26% 8.75M 0s
00:52:53 250K .......... .......... .......... .......... .......... 31% 25.3M 0s
00:52:53 300K .......... .......... .......... .......... .......... 37% 9.14M 0s
00:52:53 350K .......... .......... .......... .......... .......... 42% 16.9M 0s
00:52:53 400K .......... .......... .......... .......... .......... 47% 18.0M 0s
00:52:53 450K .......... .......... .......... .......... .......... 53% 14.7M 0s
00:52:53 500K .......... .......... .......... .......... .......... 58% 13.7M 0s
00:52:53 550K .......... .......... .......... .......... .......... 63% 18.3M 0s
00:52:53 600K .......... .......... .......... .......... .......... 69% 12.7M 0s
00:52:53 650K .......... .......... .......... .......... .......... 74% 14.6M 0s
00:52:53 700K .......... .......... .......... .......... .......... 79% 18.1M 0s
00:52:53 750K .......... .......... .......... .......... .......... 85% 10.1M 0s
00:52:53 800K .......... .......... .......... .......... .......... 90% 31.6M 0s
00:52:53 850K .......... .......... .......... .......... .......... 95% 11.4M 0s
00:52:53 900K .......... .......... .......... ......... 100% 28.3M=0.08s
00:52:53
00:52:53 2026-03-18 00:52:53 (10.9 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/regions-2.34.6.jar’ saved [962220/962220]
00:52:53
00:52:53 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/identity-spi/2.34.6/identity-spi-2.34.6.jar
00:52:53 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:53 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:53 --2026-03-18 00:52:53-- https://repo1.maven.org/maven2/software/amazon/awssdk/identity-spi/2.34.6/identity-spi-2.34.6.jar
00:52:53 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:52:53 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:52:53 HTTP request sent, awaiting response... 200 OK
00:52:53 Length: 30963 (30K) [application/java-archive]
00:52:53 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/identity-spi-2.34.6.jar’
00:52:53
00:52:53 0K .......... .......... .......... 100% 18.7M=0.002s
00:52:53
00:52:53 2026-03-18 00:52:53 (18.7 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/identity-spi-2.34.6.jar’ saved [30963/30963]
00:52:53
00:52:53 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/utils/2.34.6/utils-2.34.6.jar
00:52:53 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:53 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:53 --2026-03-18 00:52:53-- https://repo1.maven.org/maven2/software/amazon/awssdk/utils/2.34.6/utils-2.34.6.jar
00:52:53 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:52:53 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:52:53 HTTP request sent, awaiting response... 200 OK
00:52:53 Length: 241618 (236K) [application/java-archive]
00:52:53 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/utils-2.34.6.jar’
00:52:53
00:52:53 0K .......... .......... .......... .......... .......... 21% 13.4M 0s
00:52:53 50K .......... .......... .......... .......... .......... 42% 3.33M 0s
00:52:53 100K .......... .......... .......... .......... .......... 63% 3.47M 0s
00:52:53 150K .......... .......... .......... .......... .......... 84% 17.0M 0s
00:52:53 200K .......... .......... .......... ..... 100% 12.4M=0.04s
00:52:53
00:52:53 2026-03-18 00:52:53 (6.05 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/utils-2.34.6.jar’ saved [241618/241618]
00:52:53
00:52:53 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/http-client-spi/2.34.6/http-client-spi-2.34.6.jar
00:52:53 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:53 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:53 --2026-03-18 00:52:53-- https://repo1.maven.org/maven2/software/amazon/awssdk/http-client-spi/2.34.6/http-client-spi-2.34.6.jar
00:52:53 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:52:53 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:52:54 HTTP request sent, awaiting response... 200 OK
00:52:54 Length: 91685 (90K) [application/java-archive]
00:52:54 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/http-client-spi-2.34.6.jar’
00:52:54
00:52:54 0K .......... .......... .......... .......... .......... 55% 15.1M 0s
00:52:54 50K .......... .......... .......... ......... 100% 2.72M=0.02s
00:52:54
00:52:54 2026-03-18 00:52:54 (5.02 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/http-client-spi-2.34.6.jar’ saved [91685/91685]
00:52:54
00:52:54 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/retries/2.34.6/retries-2.34.6.jar
00:52:54 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:54 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:54 --2026-03-18 00:52:54-- https://repo1.maven.org/maven2/software/amazon/awssdk/retries/2.34.6/retries-2.34.6.jar
00:52:54 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:52:54 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:52:54 HTTP request sent, awaiting response... 200 OK
00:52:54 Length: 66309 (65K) [application/java-archive]
00:52:54 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/retries-2.34.6.jar’
00:52:54
00:52:54 0K .......... .......... .......... .......... .......... 77% 15.5M 0s
00:52:54 50K .......... .... 100% 8.80M=0.005s
00:52:54
00:52:54 2026-03-18 00:52:54 (13.2 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/retries-2.34.6.jar’ saved [66309/66309]
00:52:54
00:52:54 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/url-connection-client/2.34.6/url-connection-client-2.34.6.jar
00:52:54 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:54 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:54 --2026-03-18 00:52:54-- https://repo1.maven.org/maven2/software/amazon/awssdk/url-connection-client/2.34.6/url-connection-client-2.34.6.jar
00:52:54 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:52:54 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:52:54 HTTP request sent, awaiting response... 200 OK
00:52:55 Length: 33040 (32K) [application/java-archive]
00:52:55 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/url-connection-client-2.34.6.jar’
00:52:55
00:52:55 0K .......... .......... .......... .. 100% 6.01M=0.005s
00:52:55
00:52:55 2026-03-18 00:52:55 (6.01 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/url-connection-client-2.34.6.jar’ saved [33040/33040]
00:52:55
00:52:55 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/apache-client/2.34.6/apache-client-2.34.6.jar
00:52:55 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:55 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:55 --2026-03-18 00:52:55-- https://repo1.maven.org/maven2/software/amazon/awssdk/apache-client/2.34.6/apache-client-2.34.6.jar
00:52:55 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:52:55 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:52:55 HTTP request sent, awaiting response... 200 OK
00:52:55 Length: 77013 (75K) [application/java-archive]
00:52:55 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/apache-client-2.34.6.jar’
00:52:55
00:52:55 0K .......... .......... .......... .......... .......... 66% 14.0M 0s
00:52:55 50K .......... .......... ..... 100% 1.88M=0.02s
00:52:55
00:52:55 2026-03-18 00:52:55 (4.43 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/apache-client-2.34.6.jar’ saved [77013/77013]
00:52:55
00:52:55 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/arns/2.34.6/arns-2.34.6.jar
00:52:55 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:55 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:55 --2026-03-18 00:52:55-- https://repo1.maven.org/maven2/software/amazon/awssdk/arns/2.34.6/arns-2.34.6.jar
00:52:55 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:52:55 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:52:55 HTTP request sent, awaiting response... 200 OK
00:52:55 Length: 16323 (16K) [application/java-archive]
00:52:55 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/arns-2.34.6.jar’
00:52:55
00:52:55 0K .......... ..... 100% 22.1M=0.001s
00:52:55
00:52:55 2026-03-18 00:52:55 (22.1 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/arns-2.34.6.jar’ saved [16323/16323]
00:52:55
00:52:55 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/aws-query-protocol/2.34.6/aws-query-protocol-2.34.6.jar
00:52:55 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:55 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:55 --2026-03-18 00:52:55-- https://repo1.maven.org/maven2/software/amazon/awssdk/aws-query-protocol/2.34.6/aws-query-protocol-2.34.6.jar
00:52:55 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:52:55 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:52:55 HTTP request sent, awaiting response... 200 OK
00:52:56 Length: 69370 (68K) [application/java-archive]
00:52:56 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-query-protocol-2.34.6.jar’
00:52:56
00:52:56 0K .......... .......... .......... .......... .......... 73% 173K 0s
00:52:56 50K .......... ....... 100% 1.70M=0.3s
00:52:56
00:52:56 2026-03-18 00:52:56 (227 KB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-query-protocol-2.34.6.jar’ saved [69370/69370]
00:52:56
00:52:56 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/aws-xml-protocol/2.34.6/aws-xml-protocol-2.34.6.jar
00:52:56 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:56 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:56 --2026-03-18 00:52:56-- https://repo1.maven.org/maven2/software/amazon/awssdk/aws-xml-protocol/2.34.6/aws-xml-protocol-2.34.6.jar
00:52:56 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:52:56 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:52:56 HTTP request sent, awaiting response... 200 OK
00:52:56 Length: 102272 (100K) [application/java-archive]
00:52:56 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-xml-protocol-2.34.6.jar’
00:52:56
00:52:56 0K .......... .......... .......... .......... .......... 50% 14.9M 0s
00:52:56 50K .......... .......... .......... .......... ......... 100% 3.29M=0.02s
00:52:56
00:52:56 2026-03-18 00:52:56 (5.40 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-xml-protocol-2.34.6.jar’ saved [102272/102272]
00:52:56
00:52:56 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/checksums/2.34.6/checksums-2.34.6.jar
00:52:57 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:57 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:57 --2026-03-18 00:52:56-- https://repo1.maven.org/maven2/software/amazon/awssdk/checksums/2.34.6/checksums-2.34.6.jar
00:52:57 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:52:57 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:52:57 HTTP request sent, awaiting response... 200 OK
00:52:57 Length: 69585 (68K) [application/java-archive]
00:52:57 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/checksums-2.34.6.jar’
00:52:57
00:52:57 0K .......... .......... .......... .......... .......... 73% 15.6M 0s
00:52:57 50K .......... ....... 100% 10.9M=0.005s
00:52:57
00:52:57 2026-03-18 00:52:57 (14.0 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/checksums-2.34.6.jar’ saved [69585/69585]
00:52:57
00:52:57 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/checksums-spi/2.34.6/checksums-spi-2.34.6.jar
00:52:57 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:57 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:57 --2026-03-18 00:52:57-- https://repo1.maven.org/maven2/software/amazon/awssdk/checksums-spi/2.34.6/checksums-spi-2.34.6.jar
00:52:57 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:52:57 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:52:57 HTTP request sent, awaiting response... 200 OK
00:52:57 Length: 8044 (7.9K) [application/java-archive]
00:52:57 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/checksums-spi-2.34.6.jar’
00:52:57
00:52:57 0K ....... 100% 35.8M=0s
00:52:57
00:52:57 2026-03-18 00:52:57 (35.8 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/checksums-spi-2.34.6.jar’ saved [8044/8044]
00:52:57
00:52:57 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/crt-core/2.34.6/crt-core-2.34.6.jar
00:52:57 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:57 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:57 --2026-03-18 00:52:57-- https://repo1.maven.org/maven2/software/amazon/awssdk/crt-core/2.34.6/crt-core-2.34.6.jar
00:52:57 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:52:57 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:52:57 HTTP request sent, awaiting response... 200 OK
00:52:58 Length: 17774 (17K) [application/java-archive]
00:52:58 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/crt-core-2.34.6.jar’
00:52:58
00:52:58 0K .......... ....... 100% 18.0M=0.001s
00:52:58
00:52:58 2026-03-18 00:52:58 (18.0 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/crt-core-2.34.6.jar’ saved [17774/17774]
00:52:58
00:52:58 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/endpoints-spi/2.34.6/endpoints-spi-2.34.6.jar
00:52:58 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:58 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:58 --2026-03-18 00:52:58-- https://repo1.maven.org/maven2/software/amazon/awssdk/endpoints-spi/2.34.6/endpoints-spi-2.34.6.jar
00:52:58 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:52:58 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:52:58 HTTP request sent, awaiting response... 200 OK
00:52:58 Length: 13168 (13K) [application/java-archive]
00:52:58 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/endpoints-spi-2.34.6.jar’
00:52:58
00:52:58 0K .......... .. 100% 28.2M=0s
00:52:58
00:52:58 2026-03-18 00:52:58 (28.2 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/endpoints-spi-2.34.6.jar’ saved [13168/13168]
00:52:58
00:52:58 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/http-auth/2.34.6/http-auth-2.34.6.jar
00:52:58 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:58 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:58 --2026-03-18 00:52:58-- https://repo1.maven.org/maven2/software/amazon/awssdk/http-auth/2.34.6/http-auth-2.34.6.jar
00:52:58 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:52:58 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:52:58 HTTP request sent, awaiting response... 200 OK
00:52:58 Length: 17475 (17K) [application/java-archive]
00:52:58 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/http-auth-2.34.6.jar’
00:52:58
00:52:58 0K .......... ....... 100% 4.02M=0.004s
00:52:58
00:52:58 2026-03-18 00:52:58 (4.02 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/http-auth-2.34.6.jar’ saved [17475/17475]
00:52:58
00:52:58 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/http-auth-aws/2.34.6/http-auth-aws-2.34.6.jar
00:52:58 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:58 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:58 --2026-03-18 00:52:58-- https://repo1.maven.org/maven2/software/amazon/awssdk/http-auth-aws/2.34.6/http-auth-aws-2.34.6.jar
00:52:58 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:52:58 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:52:59 HTTP request sent, awaiting response... 200 OK
00:52:59 Length: 168314 (164K) [application/java-archive]
00:52:59 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/http-auth-aws-2.34.6.jar’
00:52:59
00:52:59 0K .......... .......... .......... .......... .......... 30% 11.2M 0s
00:52:59 50K .......... .......... .......... .......... .......... 60% 3.52M 0s
00:52:59 100K .......... .......... .......... .......... .......... 91% 11.1M 0s
00:52:59 150K .......... .... 100% 1.40M=0.03s
00:52:59
00:52:59 2026-03-18 00:52:59 (4.92 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/http-auth-aws-2.34.6.jar’ saved [168314/168314]
00:52:59
00:52:59 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/http-auth-aws-eventstream/2.34.6/http-auth-aws-eventstream-2.34.6.jar
00:52:59 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:59 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:59 --2026-03-18 00:52:59-- https://repo1.maven.org/maven2/software/amazon/awssdk/http-auth-aws-eventstream/2.34.6/http-auth-aws-eventstream-2.34.6.jar
00:52:59 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:52:59 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:52:59 HTTP request sent, awaiting response... 200 OK
00:52:59 Length: 8705 (8.5K) [application/java-archive]
00:52:59 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/http-auth-aws-eventstream-2.34.6.jar’
00:52:59
00:52:59 0K ........ 100% 20.4M=0s
00:52:59
00:52:59 2026-03-18 00:52:59 (20.4 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/http-auth-aws-eventstream-2.34.6.jar’ saved [8705/8705]
00:52:59
00:52:59 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/http-auth-spi/2.34.6/http-auth-spi-2.34.6.jar
00:52:59 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:59 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:59 --2026-03-18 00:52:59-- https://repo1.maven.org/maven2/software/amazon/awssdk/http-auth-spi/2.34.6/http-auth-spi-2.34.6.jar
00:52:59 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:52:59 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:52:59 HTTP request sent, awaiting response... 200 OK
00:52:59 Length: 45762 (45K) [application/java-archive]
00:52:59 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/http-auth-spi-2.34.6.jar’
00:52:59
00:52:59 0K .......... .......... .......... .......... .... 100% 16.3M=0.003s
00:52:59
00:52:59 2026-03-18 00:52:59 (16.3 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/http-auth-spi-2.34.6.jar’ saved [45762/45762]
00:52:59
00:52:59 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/json-utils/2.34.6/json-utils-2.34.6.jar
00:52:59 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:52:59 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:52:59 --2026-03-18 00:52:59-- https://repo1.maven.org/maven2/software/amazon/awssdk/json-utils/2.34.6/json-utils-2.34.6.jar
00:52:59 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:52:59 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:53:00 HTTP request sent, awaiting response... 200 OK
00:53:00 Length: 33225 (32K) [application/java-archive]
00:53:00 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/json-utils-2.34.6.jar’
00:53:00
00:53:00 0K .......... .......... .......... .. 100% 15.9M=0.002s
00:53:00
00:53:00 2026-03-18 00:53:00 (15.9 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/json-utils-2.34.6.jar’ saved [33225/33225]
00:53:00
00:53:00 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/metrics-spi/2.34.6/metrics-spi-2.34.6.jar
00:53:00 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:53:00 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:53:00 --2026-03-18 00:53:00-- https://repo1.maven.org/maven2/software/amazon/awssdk/metrics-spi/2.34.6/metrics-spi-2.34.6.jar
00:53:00 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:53:00 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:53:00 HTTP request sent, awaiting response... 200 OK
00:53:00 Length: 27262 (27K) [application/java-archive]
00:53:00 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/metrics-spi-2.34.6.jar’
00:53:00
00:53:00 0K .......... .......... ...... 100% 21.7M=0.001s
00:53:00
00:53:00 2026-03-18 00:53:00 (21.7 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/metrics-spi-2.34.6.jar’ saved [27262/27262]
00:53:00
00:53:00 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/netty-nio-client/2.34.6/netty-nio-client-2.34.6.jar
00:53:00 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:53:00 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:53:00 --2026-03-18 00:53:00-- https://repo1.maven.org/maven2/software/amazon/awssdk/netty-nio-client/2.34.6/netty-nio-client-2.34.6.jar
00:53:00 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:53:00 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:53:00 HTTP request sent, awaiting response... 200 OK
00:53:00 Length: 292688 (286K) [application/java-archive]
00:53:00 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/netty-nio-client-2.34.6.jar’
00:53:00
00:53:00 0K .......... .......... .......... .......... .......... 17% 15.1M 0s
00:53:00 50K .......... .......... .......... .......... .......... 34% 3.25M 0s
00:53:00 100K .......... .......... .......... .......... .......... 52% 11.3M 0s
00:53:00 150K .......... .......... .......... .......... .......... 69% 3.93M 0s
00:53:00 200K .......... .......... .......... .......... .......... 87% 12.8M 0s
00:53:00 250K .......... .......... .......... ..... 100% 13.3M=0.04s
00:53:00
00:53:00 2026-03-18 00:53:00 (6.73 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/netty-nio-client-2.34.6.jar’ saved [292688/292688]
00:53:00
00:53:00 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/profiles/2.34.6/profiles-2.34.6.jar
00:53:00 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:53:00 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:53:00 --2026-03-18 00:53:00-- https://repo1.maven.org/maven2/software/amazon/awssdk/profiles/2.34.6/profiles-2.34.6.jar
00:53:00 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:53:00 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:53:00 HTTP request sent, awaiting response... 200 OK
00:53:00 Length: 50524 (49K) [application/java-archive]
00:53:00 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/profiles-2.34.6.jar’
00:53:00
00:53:00 0K .......... .......... .......... .......... ......... 100% 16.7M=0.003s
00:53:00
00:53:00 2026-03-18 00:53:00 (16.7 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/profiles-2.34.6.jar’ saved [50524/50524]
00:53:00
00:53:00 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/protocol-core/2.34.6/protocol-core-2.34.6.jar
00:53:00 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:53:00 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:53:00 --2026-03-18 00:53:00-- https://repo1.maven.org/maven2/software/amazon/awssdk/protocol-core/2.34.6/protocol-core-2.34.6.jar
00:53:01 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:53:01 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:53:01 HTTP request sent, awaiting response... 200 OK
00:53:01 Length: 44371 (43K) [application/java-archive]
00:53:01 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/protocol-core-2.34.6.jar’
00:53:01
00:53:01 0K .......... .......... .......... .......... ... 100% 13.9M=0.003s
00:53:01
00:53:01 2026-03-18 00:53:01 (13.9 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/protocol-core-2.34.6.jar’ saved [44371/44371]
00:53:01
00:53:01 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/retries-spi/2.34.6/retries-spi-2.34.6.jar
00:53:01 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:53:01 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:53:01 --2026-03-18 00:53:01-- https://repo1.maven.org/maven2/software/amazon/awssdk/retries-spi/2.34.6/retries-spi-2.34.6.jar
00:53:01 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:53:01 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:53:01 HTTP request sent, awaiting response... 200 OK
00:53:01 Length: 31487 (31K) [application/java-archive]
00:53:01 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/retries-spi-2.34.6.jar’
00:53:01
00:53:01 0K .......... .......... .......... 100% 18.0M=0.002s
00:53:01
00:53:01 2026-03-18 00:53:01 (18.0 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/retries-spi-2.34.6.jar’ saved [31487/31487]
00:53:01
00:53:01 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/third-party-jackson-core/2.34.6/third-party-jackson-core-2.34.6.jar
00:53:01 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:53:01 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:53:01 --2026-03-18 00:53:01-- https://repo1.maven.org/maven2/software/amazon/awssdk/third-party-jackson-core/2.34.6/third-party-jackson-core-2.34.6.jar
00:53:01 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:53:01 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:53:01 HTTP request sent, awaiting response... 200 OK
00:53:01 Length: 535001 (522K) [application/java-archive]
00:53:01 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/third-party-jackson-core-2.34.6.jar’
00:53:01
00:53:01 0K .......... .......... .......... .......... .......... 9% 17.0M 0s
00:53:01 50K .......... .......... .......... .......... .......... 19% 3.18M 0s
00:53:01 100K .......... .......... .......... .......... .......... 28% 3.48M 0s
00:53:01 150K .......... .......... .......... .......... .......... 38% 16.4M 0s
00:53:01 200K .......... .......... .......... .......... .......... 47% 10.4M 0s
00:53:01 250K .......... .......... .......... .......... .......... 57% 13.8M 0s
00:53:01 300K .......... .......... .......... .......... .......... 66% 13.1M 0s
00:53:01 350K .......... .......... .......... .......... .......... 76% 17.8M 0s
00:53:01 400K .......... .......... .......... .......... .......... 86% 17.1M 0s
00:53:01 450K .......... .......... .......... .......... .......... 95% 11.8M 0s
00:53:01 500K .......... .......... .. 100% 187M=0.06s
00:53:01
00:53:01 2026-03-18 00:53:01 (8.94 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/third-party-jackson-core-2.34.6.jar’ saved [535001/535001]
00:53:01
00:53:01 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/utils-lite/2.34.6/utils-lite-2.34.6.jar
00:53:01 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:53:01 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:53:01 --2026-03-18 00:53:01-- https://repo1.maven.org/maven2/software/amazon/awssdk/utils-lite/2.34.6/utils-lite-2.34.6.jar
00:53:02 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:53:02 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:53:02 HTTP request sent, awaiting response... 200 OK
00:53:02 Length: 8798 (8.6K) [application/java-archive]
00:53:02 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/utils-lite-2.34.6.jar’
00:53:02
00:53:02 0K ........ 100% 56.4M=0s
00:53:02
00:53:02 2026-03-18 00:53:02 (56.4 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/utils-lite-2.34.6.jar’ saved [8798/8798]
00:53:02
00:53:02 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/org/reactivestreams/reactive-streams/1.0.4/reactive-streams-1.0.4.jar
00:53:02 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:53:02 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:53:02 --2026-03-18 00:53:02-- https://repo1.maven.org/maven2/org/reactivestreams/reactive-streams/1.0.4/reactive-streams-1.0.4.jar
00:53:02 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:53:02 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:53:02 HTTP request sent, awaiting response... 200 OK
00:53:02 Length: 11640 (11K) [application/java-archive]
00:53:02 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/reactive-streams-1.0.4.jar’
00:53:02
00:53:02 0K .......... . 100% 30.8M=0s
00:53:02
00:53:02 2026-03-18 00:53:02 (30.8 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/reactive-streams-1.0.4.jar’ saved [11640/11640]
00:53:02
00:53:02 + for x in *.jar
00:53:02 + mv omero-zarr-pixel-buffer-0.6.2-SNAPSHOT.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server
00:53:02 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:53:02 ++ deactivate nondestructive
00:53:02 ++ '[' -n '' ']'
00:53:02 ++ '[' -n '' ']'
00:53:02 ++ hash -r
00:53:02 ++ '[' -n '' ']'
00:53:02 ++ unset VIRTUAL_ENV
00:53:02 ++ unset VIRTUAL_ENV_PROMPT
00:53:02 ++ '[' '!' nondestructive = nondestructive ']'
00:53:02 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:53:02 ++ export VIRTUAL_ENV
00:53:02 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:53:02 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:53:02 ++ export PATH
00:53:02 ++ '[' -n '' ']'
00:53:02 ++ '[' -z '' ']'
00:53:02 ++ _OLD_VIRTUAL_PS1=
00:53:02 ++ PS1='(.venv3) '
00:53:02 ++ export PS1
00:53:02 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:53:02 ++ export VIRTUAL_ENV_PROMPT
00:53:02 ++ hash -r
00:53:02 + pip install -U pip
00:53:02 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
00:53:03 Collecting pip
00:53:03 Using cached pip-26.0.1-py3-none-any.whl (1.8 MB)
00:53:03 Installing collected packages: pip
00:53:03 Attempting uninstall: pip
00:53:03 Found existing installation: pip 22.3.1
00:53:03 Uninstalling pip-22.3.1:
00:53:03 Successfully uninstalled pip-22.3.1
00:53:04 Successfully installed pip-26.0.1
00:53:04 WARNING: There was an error checking the latest version of pip.
00:53:04 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
00:53:04 Collecting zeroc-ice==3.6.5
00:53:05 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:53:07 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 14.6 MB/s 0:00:02
00:53:08 Installing collected packages: zeroc-ice
00:53:08 Successfully installed zeroc-ice-3.6.5
00:53:08 + pip install markdown
00:53:09 Collecting markdown
00:53:09 Using cached markdown-3.10.2-py3-none-any.whl.metadata (5.1 kB)
00:53:09 Using cached markdown-3.10.2-py3-none-any.whl (108 kB)
00:53:09 Installing collected packages: markdown
00:53:09 Successfully installed markdown-3.10.2
00:53:09 + pip install reportlab
00:53:10 Collecting reportlab
00:53:10 Using cached reportlab-4.4.10-py3-none-any.whl.metadata (1.7 kB)
00:53:10 Collecting pillow>=9.0.0 (from reportlab)
00:53:10 Using cached pillow-12.1.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.8 kB)
00:53:10 Collecting charset-normalizer (from reportlab)
00:53:10 Using cached charset_normalizer-3.4.6-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (40 kB)
00:53:10 Using cached reportlab-4.4.10-py3-none-any.whl (2.0 MB)
00:53:11 Using cached pillow-12.1.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB)
00:53:11 Using cached charset_normalizer-3.4.6-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (204 kB)
00:53:11 Installing collected packages: pillow, charset-normalizer, reportlab
00:53:12
00:53:12 Successfully installed charset-normalizer-3.4.6 pillow-12.1.1 reportlab-4.4.10
00:53:12 + pip install omego
00:53:12 Collecting omego
00:53:12 Using cached omego-0.8.0-py3-none-any.whl.metadata (1.9 kB)
00:53:12 Collecting future (from omego)
00:53:12 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
00:53:13 Collecting yaclifw>=0.1.1 (from omego)
00:53:13 Using cached yaclifw-0.2.0-py3-none-any.whl
00:53:13 Collecting six (from yaclifw>=0.1.1->omego)
00:53:13 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
00:53:13 Using cached omego-0.8.0-py3-none-any.whl (41 kB)
00:53:13 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:53:13 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
00:53:13 Installing collected packages: six, future, yaclifw, omego
00:53:13
00:53:13 Successfully installed future-1.0.0 omego-0.8.0 six-1.17.0 yaclifw-0.2.0
00:53:13 + pip install tables
00:53:14 Collecting tables
00:53:14 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.1 kB)
00:53:14 Collecting numpy>=1.20.0 (from tables)
00:53:14 Using cached numpy-2.4.3-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB)
00:53:14 Collecting numexpr>=2.6.2 (from tables)
00:53:14 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
00:53:14 Collecting packaging (from tables)
00:53:14 Using cached packaging-26.0-py3-none-any.whl.metadata (3.3 kB)
00:53:14 Collecting py-cpuinfo (from tables)
00:53:14 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
00:53:15 Collecting blosc2>=2.3.0 (from tables)
00:53:15 Using cached blosc2-4.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (6.2 kB)
00:53:15 Collecting ndindex (from blosc2>=2.3.0->tables)
00:53:15 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
00:53:15 Collecting msgpack (from blosc2>=2.3.0->tables)
00:53:15 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
00:53:15 Collecting requests (from blosc2>=2.3.0->tables)
00:53:15 Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB)
00:53:15 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.4.6)
00:53:15 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables)
00:53:15 Using cached idna-3.11-py3-none-any.whl.metadata (8.4 kB)
00:53:15 Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables)
00:53:15 Using cached urllib3-2.6.3-py3-none-any.whl.metadata (6.9 kB)
00:53:15 Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables)
00:53:15 Using cached certifi-2026.2.25-py3-none-any.whl.metadata (2.5 kB)
00:53:15 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (7.2 MB)
00:53:15 Using cached blosc2-4.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (5.2 MB)
00:53:16 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB)
00:53:16 Using cached numpy-2.4.3-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
00:53:16 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (426 kB)
00:53:16 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
00:53:16 Using cached packaging-26.0-py3-none-any.whl (74 kB)
00:53:16 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
00:53:16 Using cached requests-2.32.5-py3-none-any.whl (64 kB)
00:53:16 Using cached idna-3.11-py3-none-any.whl (71 kB)
00:53:16 Using cached urllib3-2.6.3-py3-none-any.whl (131 kB)
00:53:16 Using cached certifi-2026.2.25-py3-none-any.whl (153 kB)
00:53:16 Installing collected packages: py-cpuinfo, urllib3, packaging, numpy, ndindex, msgpack, idna, certifi, requests, numexpr, blosc2, tables
00:53:21
00:53:21 Successfully installed blosc2-4.1.2 certifi-2026.2.25 idna-3.11 msgpack-1.1.2 ndindex-1.10.1 numexpr-2.14.1 numpy-2.4.3 packaging-26.0 py-cpuinfo-9.0.0 requests-2.32.5 tables-3.11.1 urllib3-2.6.3
00:53:21 + pip install jinja2
00:53:21 Collecting jinja2
00:53:22 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
00:53:22 Collecting MarkupSafe>=2.0 (from jinja2)
00:53:22 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
00:53:22 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
00:53:22 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
00:53:22 Installing collected packages: MarkupSafe, jinja2
00:53:22
00:53:22 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
00:53:22 + pip install omero-py
00:53:23 Collecting omero-py
00:53:23 Using cached omero_py-5.22.0-py3-none-any.whl.metadata (6.5 kB)
00:53:23 Collecting appdirs (from omero-py)
00:53:23 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
00:53:23 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
00:53:23 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.3)
00:53:23 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.1.1)
00:53:23 Collecting PyYAML (from omero-py)
00:53:23 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
00:53:23 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
00:53:23 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.32.5)
00:53:23 Collecting portalocker (from omero-py)
00:53:23 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
00:53:23 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.6)
00:53:23 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.11)
00:53:23 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2.6.3)
00:53:23 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.2.25)
00:53:23 Using cached omero_py-5.22.0-py3-none-any.whl (2.8 MB)
00:53:23 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:53:23 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
00:53:23 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
00:53:23 Installing collected packages: appdirs, PyYAML, portalocker, omero-py
00:53:25
00:53:25 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.22.0 portalocker-3.2.0
00:53:25 + pip install pyarrow
00:53:26 Collecting pyarrow
00:53:26 Using cached pyarrow-23.0.1-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (3.1 kB)
00:53:26 Using cached pyarrow-23.0.1-cp311-cp311-manylinux_2_28_x86_64.whl (47.6 MB)
00:53:26 Installing collected packages: pyarrow
00:53:28 Successfully installed pyarrow-23.0.1
00:53:28 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
00:53:28 Collecting omero-metadata
00:53:28 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-t8sy3ev2/omero-metadata_28ff2654abb241b78ec433a90ad09bb3
00:53:28 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-t8sy3ev2/omero-metadata_28ff2654abb241b78ec433a90ad09bb3
00:53:29 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit ae2291e67e81c0dc1e7a5d446b0b532d13478477
00:53:29 Installing build dependencies: started
00:53:30 Installing build dependencies: finished with status 'done'
00:53:30 Getting requirements to build wheel: started
00:53:30 Getting requirements to build wheel: finished with status 'done'
00:53:30 Preparing metadata (pyproject.toml): started
00:53:31 Preparing metadata (pyproject.toml): finished with status 'done'
00:53:31 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.22.0)
00:53:31 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.3)
00:53:31 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6)
00:53:32 Collecting pandas (from omero-metadata)
00:53:32 Using cached pandas-3.0.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (79 kB)
00:53:32 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
00:53:32 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
00:53:32 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.4.3)
00:53:32 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.1.1)
00:53:32 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
00:53:32 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.5)
00:53:32 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0)
00:53:32 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.3)
00:53:32 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
00:53:32 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
00:53:32 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
00:53:32 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.6)
00:53:32 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.11)
00:53:32 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.6.3)
00:53:32 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.2.25)
00:53:32 Using cached pandas-3.0.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (11.3 MB)
00:53:32 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
00:53:32 Building wheels for collected packages: omero-metadata
00:53:32 Building wheel for omero-metadata (pyproject.toml): started
00:53:32 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
00:53:32 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39373 sha256=07dd4ef2f1abcdd6975f6561431458fb901166de988f7e94a50c036257f5b878
00:53:32 Stored in directory: /tmp/pip-ephem-wheel-cache-1xg9qwxs/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
00:53:32 Successfully built omero-metadata
00:53:32 Installing collected packages: python-dateutil, pandas, omero-metadata
00:53:39
00:53:39 Successfully installed omero-metadata-0.13.1.dev0 pandas-3.0.1 python-dateutil-2.9.0.post0
00:53:39 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
00:53:39 Collecting omero-cli-render
00:53:39 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-bwhxc7ee/omero-cli-render_12fbc2987723459b8cebe653687f9d75
00:53:39 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-bwhxc7ee/omero-cli-render_12fbc2987723459b8cebe653687f9d75
00:53:40 Running command git checkout -b merge_ci --track origin/merge_ci
00:53:40 Switched to a new branch 'merge_ci'
00:53:40 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:53:40 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 796e8cec4fe9d7e6fc93a79ddf3cf1b2e607e52f
00:53:40 Installing build dependencies: started
00:53:41 Installing build dependencies: finished with status 'done'
00:53:41 Getting requirements to build wheel: started
00:53:41 Getting requirements to build wheel: finished with status 'done'
00:53:41 Preparing metadata (pyproject.toml): started
00:53:42 Preparing metadata (pyproject.toml): finished with status 'done'
00:53:42 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3)
00:53:42 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.22.0)
00:53:42 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
00:53:42 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
00:53:42 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.3)
00:53:42 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.1.1)
00:53:42 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
00:53:42 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.5)
00:53:42 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0)
00:53:42 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.6)
00:53:42 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.11)
00:53:42 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.6.3)
00:53:42 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.2.25)
00:53:42 Building wheels for collected packages: omero-cli-render
00:53:42 Building wheel for omero-cli-render (pyproject.toml): started
00:53:42 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
00:53:42 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19839 sha256=d0168f729e804f48adab9e84654bcde64803c1224964d831be5744755f21b780
00:53:42 Stored in directory: /tmp/pip-ephem-wheel-cache-fmgpo64j/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
00:53:42 Successfully built omero-cli-render
00:53:42 Installing collected packages: omero-cli-render
00:53:42 Successfully installed omero-cli-render-0.8.2.dev0
00:53:42 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
00:53:42 Collecting omero-cli-duplicate
00:53:42 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-pt6aa67h/omero-cli-duplicate_728d2a6d37e94c80acd1686cc811c6a2
00:53:42 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-pt6aa67h/omero-cli-duplicate_728d2a6d37e94c80acd1686cc811c6a2
00:53:43 Running command git checkout -b merge_ci --track origin/merge_ci
00:53:44 Switched to a new branch 'merge_ci'
00:53:44 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:53:44 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 75de39d838b554f052617ae91250bcfb05000609
00:53:44 Installing build dependencies: started
00:53:45 Installing build dependencies: finished with status 'done'
00:53:45 Getting requirements to build wheel: started
00:53:45 Getting requirements to build wheel: finished with status 'done'
00:53:45 Preparing metadata (pyproject.toml): started
00:53:45 Preparing metadata (pyproject.toml): finished with status 'done'
00:53:45 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.22.0)
00:53:45 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
00:53:45 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
00:53:45 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.3)
00:53:45 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.1.1)
00:53:45 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3)
00:53:45 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
00:53:45 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.5)
00:53:45 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0)
00:53:45 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.6)
00:53:45 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.11)
00:53:45 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.6.3)
00:53:45 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.2.25)
00:53:45 Building wheels for collected packages: omero-cli-duplicate
00:53:45 Building wheel for omero-cli-duplicate (pyproject.toml): started
00:53:45 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
00:53:45 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11539 sha256=fce6248e3ca9f00119d65b18d674a83f5cbd0a80f6c6184e9ce041f94b3f2e38
00:53:45 Stored in directory: /tmp/pip-ephem-wheel-cache-fymwnc3f/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
00:53:45 Successfully built omero-cli-duplicate
00:53:45 Installing collected packages: omero-cli-duplicate
00:53:45 Successfully installed omero-cli-duplicate-0.4.1.dev0
00:53:45 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr
00:53:46 Collecting omero-cli-zarr
00:53:46 Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-p5i9hyx9/omero-cli-zarr_39e606324221422cb150a9b8017a2509
00:53:46 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-p5i9hyx9/omero-cli-zarr_39e606324221422cb150a9b8017a2509
00:53:47 Running command git checkout -b merge_ci --track origin/merge_ci
00:53:47 Switched to a new branch 'merge_ci'
00:53:47 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:53:47 Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit a198a14e0108f5ab1d670d19b1c2c10ad9c60873
00:53:47 Installing build dependencies: started
00:53:48 Installing build dependencies: finished with status 'done'
00:53:48 Getting requirements to build wheel: started
00:53:48 Getting requirements to build wheel: finished with status 'done'
00:53:48 Installing backend dependencies: started
00:53:49 Installing backend dependencies: finished with status 'done'
00:53:49 Preparing metadata (pyproject.toml): started
00:53:49 Preparing metadata (pyproject.toml): finished with status 'done'
00:53:49 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.22.0)
00:53:50 Collecting ome-zarr>=0.13.0 (from omero-cli-zarr)
00:53:50 Using cached ome_zarr-0.14.0-py3-none-any.whl.metadata (2.9 kB)
00:53:50 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.4.3)
00:53:50 Collecting dask<=2026.1.1,>=2025.12.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
00:53:50 Using cached dask-2026.1.1-py3-none-any.whl.metadata (3.8 kB)
00:53:50 Collecting zarr>=3.0.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
00:53:50 Using cached zarr-3.1.5-py3-none-any.whl.metadata (10 kB)
00:53:50 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:53:50 Using cached fsspec-2026.2.0-py3-none-any.whl.metadata (10 kB)
00:53:51 Collecting aiohttp (from ome-zarr>=0.13.0->omero-cli-zarr)
00:53:51 Using cached aiohttp-3.13.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
00:53:51 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.32.5)
00:53:51 Collecting scikit-image>=0.19.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
00:53:51 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB)
00:53:51 Collecting toolz (from ome-zarr>=0.13.0->omero-cli-zarr)
00:53:51 Using cached toolz-1.1.0-py3-none-any.whl.metadata (5.1 kB)
00:53:51 Collecting rangehttpserver (from ome-zarr>=0.13.0->omero-cli-zarr)
00:53:51 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl.metadata (769 bytes)
00:53:51 Collecting Deprecated (from ome-zarr>=0.13.0->omero-cli-zarr)
00:53:51 Using cached deprecated-1.3.1-py2.py3-none-any.whl.metadata (5.9 kB)
00:53:52 Collecting click>=8.1 (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:53:52 Using cached click-8.3.1-py3-none-any.whl.metadata (2.6 kB)
00:53:52 Collecting cloudpickle>=3.0.0 (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:53:52 Using cached cloudpickle-3.1.2-py3-none-any.whl.metadata (7.1 kB)
00:53:52 Requirement already satisfied: packaging>=20.0 in ./.venv3/lib64/python3.11/site-packages (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr) (26.0)
00:53:52 Collecting partd>=1.4.0 (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:53:52 Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB)
00:53:52 Requirement already satisfied: pyyaml>=5.3.1 in ./.venv3/lib64/python3.11/site-packages (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr) (6.0.3)
00:53:52 Collecting importlib_metadata>=4.13.0 (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:53:52 Using cached importlib_metadata-8.7.1-py3-none-any.whl.metadata (4.7 kB)
00:53:52 Collecting s3fs>2024.2.0 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:53:52 Using cached s3fs-2026.2.0-py3-none-any.whl.metadata (1.2 kB)
00:53:52 Collecting zipp>=3.20 (from importlib_metadata>=4.13.0->dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:53:52 Using cached zipp-3.23.0-py3-none-any.whl.metadata (3.6 kB)
00:53:52 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.4.4)
00:53:52 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.0.0)
00:53:52 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (12.1.1)
00:53:52 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.6.5)
00:53:52 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.2.0)
00:53:52 Collecting locket (from partd>=1.4.0->dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:53:52 Using cached locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB)
00:53:52 Collecting aiobotocore<4.0.0,>=2.19.0 (from s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:53:52 Using cached aiobotocore-3.2.1-py3-none-any.whl.metadata (26 kB)
00:53:52 Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:53:52 Using cached aioitertools-0.13.0-py3-none-any.whl.metadata (3.3 kB)
00:53:53 Collecting botocore<1.42.62,>=1.42.53 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:53:53 Using cached botocore-1.42.61-py3-none-any.whl.metadata (5.9 kB)
00:53:53 Requirement already satisfied: python-dateutil<3.0.0,>=2.1 in ./.venv3/lib64/python3.11/site-packages (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (2.9.0.post0)
00:53:53 Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:53:53 Using cached jmespath-1.1.0-py3-none-any.whl.metadata (7.6 kB)
00:53:53 Collecting multidict<7.0.0,>=6.0.0 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:53:53 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (5.3 kB)
00:53:54 Collecting wrapt<3.0.0,>=1.10.10 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:53:54 Using cached wrapt-2.1.2-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (7.4 kB)
00:53:54 Collecting aiohappyeyeballs>=2.5.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:53:54 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl.metadata (5.9 kB)
00:53:54 Collecting aiosignal>=1.4.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:53:54 Using cached aiosignal-1.4.0-py3-none-any.whl.metadata (3.7 kB)
00:53:54 Collecting attrs>=17.3.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:53:54 Using cached attrs-25.4.0-py3-none-any.whl.metadata (10 kB)
00:53:54 Collecting frozenlist>=1.1.1 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:53:54 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (20 kB)
00:53:55 Collecting propcache>=0.2.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:53:55 Using cached propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (13 kB)
00:53:55 Collecting yarl<2.0,>=1.17.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:53:55 Using cached yarl-1.23.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (79 kB)
00:53:55 Requirement already satisfied: urllib3!=2.2.0,<3,>=1.25.4 in ./.venv3/lib64/python3.11/site-packages (from botocore<1.42.62,>=1.42.53->aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (2.6.3)
00:53:55 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil<3.0.0,>=2.1->aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (1.17.0)
00:53:55 Requirement already satisfied: idna>=2.0 in ./.venv3/lib64/python3.11/site-packages (from yarl<2.0,>=1.17.0->aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) (3.11)
00:53:55 Collecting typing-extensions>=4.2 (from aiosignal>=1.4.0->aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:53:55 Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB)
00:53:56 Collecting scipy>=1.11.4 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:53:56 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (62 kB)
00:53:56 Collecting networkx>=3.0 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:53:56 Using cached networkx-3.6.1-py3-none-any.whl.metadata (6.8 kB)
00:53:56 Collecting imageio!=2.35.0,>=2.33 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:53:56 Using cached imageio-2.37.3-py3-none-any.whl.metadata (9.7 kB)
00:53:56 Collecting tifffile>=2022.8.12 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:53:56 Using cached tifffile-2026.3.3-py3-none-any.whl.metadata (31 kB)
00:53:56 Collecting lazy-loader>=0.4 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:53:56 Using cached lazy_loader-0.5-py3-none-any.whl.metadata (5.9 kB)
00:53:56 Collecting donfig>=0.8 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:53:56 Using cached donfig-0.8.1.post1-py3-none-any.whl.metadata (5.0 kB)
00:53:56 Collecting google-crc32c>=1.5 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:53:56 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl.metadata (1.7 kB)
00:53:57 Collecting numcodecs>=0.14 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:53:57 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (3.4 kB)
00:53:57 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (3.4.6)
00:53:57 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (2026.2.25)
00:53:57 Using cached ome_zarr-0.14.0-py3-none-any.whl (45 kB)
00:53:57 Using cached dask-2026.1.1-py3-none-any.whl (1.5 MB)
00:53:57 Using cached click-8.3.1-py3-none-any.whl (108 kB)
00:53:57 Using cached cloudpickle-3.1.2-py3-none-any.whl (22 kB)
00:53:57 Using cached fsspec-2026.2.0-py3-none-any.whl (202 kB)
00:53:57 Using cached importlib_metadata-8.7.1-py3-none-any.whl (27 kB)
00:53:57 Using cached partd-1.4.2-py3-none-any.whl (18 kB)
00:53:57 Using cached s3fs-2026.2.0-py3-none-any.whl (31 kB)
00:53:57 Using cached aiobotocore-3.2.1-py3-none-any.whl (87 kB)
00:53:57 Using cached aiohttp-3.13.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.7 MB)
00:53:57 Using cached aioitertools-0.13.0-py3-none-any.whl (24 kB)
00:53:57 Using cached botocore-1.42.61-py3-none-any.whl (14.6 MB)
00:53:57 Using cached jmespath-1.1.0-py3-none-any.whl (20 kB)
00:53:57 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (246 kB)
00:53:57 Using cached wrapt-2.1.2-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (114 kB)
00:53:57 Using cached yarl-1.23.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (102 kB)
00:53:58 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl (15 kB)
00:53:58 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB)
00:53:58 Using cached attrs-25.4.0-py3-none-any.whl (67 kB)
00:53:58 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB)
00:53:58 Using cached propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (210 kB)
00:53:58 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB)
00:53:58 Using cached imageio-2.37.3-py3-none-any.whl (317 kB)
00:53:58 Using cached lazy_loader-0.5-py3-none-any.whl (8.0 kB)
00:53:58 Using cached networkx-3.6.1-py3-none-any.whl (2.1 MB)
00:53:58 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.3 MB)
00:53:58 Using cached tifffile-2026.3.3-py3-none-any.whl (243 kB)
00:53:58 Using cached toolz-1.1.0-py3-none-any.whl (58 kB)
00:53:58 Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB)
00:53:58 Using cached zarr-3.1.5-py3-none-any.whl (284 kB)
00:53:58 Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB)
00:53:58 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl (33 kB)
00:53:58 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (9.1 MB)
00:53:58 Using cached zipp-3.23.0-py3-none-any.whl (10 kB)
00:53:58 Using cached deprecated-1.3.1-py2.py3-none-any.whl (11 kB)
00:53:58 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB)
00:53:58 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl (7.8 kB)
00:53:58 Building wheels for collected packages: omero-cli-zarr
00:53:58 Building wheel for omero-cli-zarr (pyproject.toml): started
00:53:59 Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done'
00:53:59 Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev162+ga198a14-py3-none-any.whl size=38287 sha256=1536ff25fa386bd34e0dd1cc15edd6d301fc8fa11406e9ed481f0029b514c977
00:53:59 Stored in directory: /tmp/pip-ephem-wheel-cache-5bwo_0ha/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529
00:53:59 Successfully built omero-cli-zarr
00:53:59 Installing collected packages: rangehttpserver, zipp, wrapt, typing-extensions, toolz, tifffile, scipy, propcache, networkx, multidict, locket, lazy-loader, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, yarl, scikit-image, partd, numcodecs, importlib_metadata, Deprecated, botocore, aiosignal, zarr, dask, aiohttp, aiobotocore, s3fs, ome-zarr, omero-cli-zarr
00:54:08
00:54:08 Successfully installed Deprecated-1.3.1 aiobotocore-3.2.1 aiohappyeyeballs-2.6.1 aiohttp-3.13.3 aioitertools-0.13.0 aiosignal-1.4.0 attrs-25.4.0 botocore-1.42.61 click-8.3.1 cloudpickle-3.1.2 dask-2026.1.1 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.2.0 google-crc32c-1.8.0 imageio-2.37.3 importlib_metadata-8.7.1 jmespath-1.1.0 lazy-loader-0.5 locket-1.0.0 multidict-6.7.1 networkx-3.6.1 numcodecs-0.16.5 ome-zarr-0.14.0 omero-cli-zarr-0.5.5.dev162+ga198a14 partd-1.4.2 propcache-0.4.1 rangehttpserver-1.4.0 s3fs-2026.2.0 scikit-image-0.26.0 scipy-1.17.1 tifffile-2026.3.3 toolz-1.1.0 typing-extensions-4.15.0 wrapt-2.1.2 yarl-1.23.0 zarr-3.1.5 zipp-3.23.0
00:54:09 + pip install omero-certificates
00:54:09 Collecting omero-certificates
00:54:09 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
00:54:09 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.22.0)
00:54:09 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
00:54:09 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
00:54:09 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.3)
00:54:09 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.1.1)
00:54:09 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3)
00:54:09 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
00:54:09 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.5)
00:54:09 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0)
00:54:09 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.6)
00:54:09 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.11)
00:54:09 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.6.3)
00:54:09 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.2.25)
00:54:09 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
00:54:09 Installing collected packages: omero-certificates
00:54:09 Successfully installed omero-certificates-0.4.0
00:54:10 + for x in *.tar.gz
00:54:10 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
00:54:10 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
00:54:10 Installing build dependencies: started
00:54:11 Installing build dependencies: finished with status 'done'
00:54:11 Getting requirements to build wheel: started
00:54:11 Getting requirements to build wheel: finished with status 'done'
00:54:11 Preparing metadata (pyproject.toml): started
00:54:11 Preparing metadata (pyproject.toml): finished with status 'done'
00:54:11 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.22.0)
00:54:11 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
00:54:11 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
00:54:11 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.3)
00:54:11 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.1.1)
00:54:11 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3)
00:54:11 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
00:54:11 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.5)
00:54:11 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0)
00:54:11 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.6)
00:54:11 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.11)
00:54:11 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.6.3)
00:54:11 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.2.25)
00:54:11 Building wheels for collected packages: omero-dropbox
00:54:11 Building wheel for omero-dropbox (pyproject.toml): started
00:54:11 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
00:54:11 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49154 sha256=e6bf6530e6e494b288288d844695fd338ecb0a3b438981a4234a7ac45620f7c0
00:54:11 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
00:54:12 Successfully built omero-dropbox
00:54:12 Installing collected packages: omero-dropbox
00:54:12 Successfully installed omero-dropbox-5.7.1.dev0
00:54:12 + for x in *.tar.gz
00:54:12 + pip install -U omero_marshal-0.9.2.dev0.tar.gz
00:54:12 Processing ./omero_marshal-0.9.2.dev0.tar.gz
00:54:12 Installing build dependencies: started
00:54:13 Installing build dependencies: finished with status 'done'
00:54:13 Getting requirements to build wheel: started
00:54:14 Getting requirements to build wheel: finished with status 'done'
00:54:14 Preparing metadata (pyproject.toml): started
00:54:14 Preparing metadata (pyproject.toml): finished with status 'done'
00:54:14 Building wheels for collected packages: omero_marshal
00:54:14 Building wheel for omero_marshal (pyproject.toml): started
00:54:14 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
00:54:14 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88131 sha256=46d80d6392725b99fd4cba0769e1d510fa8b337968cd08e669c34bbf02b224fe
00:54:14 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230
00:54:14 Successfully built omero_marshal
00:54:14 Installing collected packages: omero_marshal
00:54:14 Successfully installed omero_marshal-0.9.2.dev0
00:54:15 + for x in *.tar.gz
00:54:15 + pip install -U omero_py-5.22.1.dev0.tar.gz
00:54:15 Processing ./omero_py-5.22.1.dev0.tar.gz
00:54:15 Installing build dependencies: started
00:54:16 Installing build dependencies: finished with status 'done'
00:54:16 Getting requirements to build wheel: started
00:54:16 Getting requirements to build wheel: finished with status 'done'
00:54:16 Preparing metadata (pyproject.toml): started
00:54:16 Preparing metadata (pyproject.toml): finished with status 'done'
00:54:17 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (1.4.4)
00:54:17 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (1.0.0)
00:54:17 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (2.4.3)
00:54:17 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (12.1.1)
00:54:17 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (6.0.3)
00:54:17 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (3.6.5)
00:54:17 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (2.32.5)
00:54:17 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (3.2.0)
00:54:17 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.1.dev0) (3.4.6)
00:54:17 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.1.dev0) (3.11)
00:54:17 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.1.dev0) (2.6.3)
00:54:17 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.1.dev0) (2026.2.25)
00:54:17 Building wheels for collected packages: omero-py
00:54:17 Building wheel for omero-py (pyproject.toml): started
00:54:18 Building wheel for omero-py (pyproject.toml): finished with status 'done'
00:54:18 Created wheel for omero-py: filename=omero_py-5.22.1.dev0-py3-none-any.whl size=2786654 sha256=0abaa6a91a0628b47505f0a34dc3d8f2fabbcbd8389b11c18c83491e49c434d8
00:54:18 Stored in directory: /home/omero/.cache/pip/wheels/e5/0d/4a/1d505358a194b66ce24f7dc55acc515e437e72953730429407
00:54:18 Successfully built omero-py
00:54:18 Installing collected packages: omero-py
00:54:18 Attempting uninstall: omero-py
00:54:18 Found existing installation: omero-py 5.22.0
00:54:18 Uninstalling omero-py-5.22.0:
00:54:18 Successfully uninstalled omero-py-5.22.0
00:54:20 Successfully installed omero-py-5.22.1.dev0
00:54:20 + for x in *.tar.gz
00:54:20 + pip install -U omero_scripts-5.10.1.dev0.tar.gz
00:54:20 Processing ./omero_scripts-5.10.1.dev0.tar.gz
00:54:20 Installing build dependencies: started
00:54:21 Installing build dependencies: finished with status 'done'
00:54:21 Getting requirements to build wheel: started
00:54:21 Getting requirements to build wheel: finished with status 'done'
00:54:21 Preparing metadata (pyproject.toml): started
00:54:22 Preparing metadata (pyproject.toml): finished with status 'done'
00:54:22 Building wheels for collected packages: omero-scripts
00:54:22 Building wheel for omero-scripts (pyproject.toml): started
00:54:22 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
00:54:22 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=137001 sha256=9eb2351f1da4666b6fd71980d5d862f649df8f1ad3c9d0316fee44aefa71c2d4
00:54:22 Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e
00:54:22 Successfully built omero-scripts
00:54:22 Installing collected packages: omero-scripts
00:54:22 Successfully installed omero-scripts-5.10.1.dev0
00:54:22 + for x in *.tar.gz
00:54:22 + pip install -U omero_web-5.31.1.dev0.tar.gz
00:54:22 Processing ./omero_web-5.31.1.dev0.tar.gz
00:54:23 Installing build dependencies: started
00:54:24 Installing build dependencies: finished with status 'done'
00:54:24 Getting requirements to build wheel: started
00:54:24 Getting requirements to build wheel: finished with status 'done'
00:54:24 Preparing metadata (pyproject.toml): started
00:54:24 Preparing metadata (pyproject.toml): finished with status 'done'
00:54:24 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (5.22.1.dev0)
00:54:24 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.31.1.dev0)
00:54:24 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl.metadata (27 kB)
00:54:24 Collecting Django<5.3,>=5.2.9 (from omero-web==5.31.1.dev0)
00:54:24 Using cached django-5.2.12-py3-none-any.whl.metadata (4.1 kB)
00:54:25 Collecting django-pipeline>=4.1.0 (from omero-web==5.31.1.dev0)
00:54:25 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
00:54:25 Collecting django-cors-headers==3.7.0 (from omero-web==5.31.1.dev0)
00:54:25 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
00:54:25 Collecting whitenoise>=5.3.0 (from omero-web==5.31.1.dev0)
00:54:25 Using cached whitenoise-6.12.0-py3-none-any.whl.metadata (3.7 kB)
00:54:25 Collecting gunicorn>=19.3 (from omero-web==5.31.1.dev0)
00:54:25 Using cached gunicorn-25.1.0-py3-none-any.whl.metadata (5.5 kB)
00:54:25 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (0.9.2.dev0)
00:54:25 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (12.1.1)
00:54:25 Collecting pytz (from omero-web==5.31.1.dev0)
00:54:25 Using cached pytz-2026.1.post1-py2.py3-none-any.whl.metadata (22 kB)
00:54:25 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (3.2.0)
00:54:25 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (26.0)
00:54:25 Collecting importlib-resources (from omero-web==5.31.1.dev0)
00:54:25 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
00:54:25 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.31.1.dev0)
00:54:25 Using cached asgiref-3.11.1-py3-none-any.whl.metadata (9.3 kB)
00:54:25 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.31.1.dev0)
00:54:25 Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB)
00:54:25 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.31.1.dev0) (65.5.1)
00:54:25 Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.31.1.dev0)
00:54:26 Using cached wheel-0.46.3-py3-none-any.whl.metadata (2.4 kB)
00:54:26 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (1.4.4)
00:54:26 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (1.0.0)
00:54:26 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (2.4.3)
00:54:26 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (6.0.3)
00:54:26 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (3.6.5)
00:54:26 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (2.32.5)
00:54:26 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (3.4.6)
00:54:26 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (3.11)
00:54:26 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (2.6.3)
00:54:26 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (2026.2.25)
00:54:26 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
00:54:26 Using cached django-5.2.12-py3-none-any.whl (8.3 MB)
00:54:26 Using cached asgiref-3.11.1-py3-none-any.whl (24 kB)
00:54:26 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl (32 kB)
00:54:26 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
00:54:26 Using cached gunicorn-25.1.0-py3-none-any.whl (197 kB)
00:54:26 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB)
00:54:26 Using cached whitenoise-6.12.0-py3-none-any.whl (20 kB)
00:54:26 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
00:54:26 Using cached pytz-2026.1.post1-py2.py3-none-any.whl (510 kB)
00:54:26 Using cached wheel-0.46.3-py3-none-any.whl (30 kB)
00:54:26 Building wheels for collected packages: omero-web
00:54:26 Building wheel for omero-web (pyproject.toml): started
00:54:27 Building wheel for omero-web (pyproject.toml): finished with status 'done'
00:54:27 Created wheel for omero-web: filename=omero_web-5.31.1.dev0-py3-none-any.whl size=2819308 sha256=e402f9c2499dbe9f856b6b10da26c97a7eeacf8a2337e1f6f972ac8eac6aad8a
00:54:27 Stored in directory: /home/omero/.cache/pip/wheels/48/a3/5b/968853abf49b64e1726fdb37874d77f08ddad2d06b53de06b3
00:54:27 Successfully built omero-web
00:54:27 Installing collected packages: pytz, whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
00:54:30
00:54:30 Successfully installed Django-5.2.12 asgiref-3.11.1 concurrent-log-handler-0.9.29 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-25.1.0 importlib-resources-6.5.2 omero-web-5.31.1.dev0 pytz-2026.1.post1 sqlparse-0.5.5 wheel-0.46.3 whitenoise-6.12.0
00:54:30 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
00:54:30 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:54:30 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:54:30 --2026-03-18 00:54:30-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
00:54:31 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.108.133, 185.199.109.133, ...
00:54:31 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected.
00:54:31 HTTP request sent, awaiting response... 200 OK
00:54:31 Length: 134972 (132K) [text/plain]
00:54:31 Saving to: ‘Figure_To_Pdf.py’
00:54:31
00:54:31 0K .......... .......... .......... .......... .......... 37% 2.63M 0s
00:54:31 50K .......... .......... .......... .......... .......... 75% 9.00M 0s
00:54:31 100K .......... .......... .......... . 100% 4.17M=0.03s
00:54:31
00:54:31 2026-03-18 00:54:31 (4.10 MB/s) - ‘Figure_To_Pdf.py’ saved [134972/134972]
00:54:31
00:54:31 + chmod 755 Figure_To_Pdf.py
00:54:31 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
00:54:31 + omero config set omero.db.name OMERO-server
00:54:33 + omero config set omero.db.host pg
00:54:35 + omero config set omero.db.user postgres
00:54:37 + omero config set omero.data.dir /home/omero/omero-server-data
00:54:39 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
00:54:41 + omero config set omero.db.poolsize 25
00:54:43 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
00:54:45 + omero config set omero.security.trustStorePassword changeit
00:54:47 + omero config set omero.mail.config true
00:54:49 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
00:54:51 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
00:54:53 + omero certificates
00:54:54 OpenSSL 3.5.1 1 Jul 2025 (Library: OpenSSL 3.5.1 1 Jul 2025)
00:54:54 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
00:54:55 + '[' false = true ']'
00:54:55 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
00:54:55 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
00:54:55 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
00:54:55 2026-03-18 00:54:55,213 [ omego.db] DEBUG dbcommand => upgrade
00:54:55 2026-03-18 00:54:55,213 [ omego.db] DEBUG dbhost => localhost
00:54:55 2026-03-18 00:54:55,213 [ omego.db] DEBUG dbname => OMERO-server
00:54:55 2026-03-18 00:54:55,213 [ omego.db] DEBUG dbpass => omero
00:54:55 2026-03-18 00:54:55,213 [ omego.db] DEBUG dbuser => omero
00:54:55 2026-03-18 00:54:55,213 [ omego.db] DEBUG rootpass => omero
00:54:55 2026-03-18 00:54:55,213 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
00:54:55 2026-03-18 00:54:55,213 [omego.extern] INFO Executing : omero version
00:54:57 OMERO.py version:
00:54:57 OMERO.server version:
00:54:57 5.6.3-594-d1dbc52077-ice36-b83
00:54:57 5.22.1.dev0
00:54:57 2026-03-18 00:54:57,300 [omego.extern] INFO Completed [2.087 s]
00:54:57 2026-03-18 00:54:57,300 [omego.extern] DEBUG Using omero CLI from omero
00:54:57 2026-03-18 00:54:57,300 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
00:54:57 2026-03-18 00:54:57,300 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:54:57 2026-03-18 00:54:57,300 [omego.extern] INFO Executing : omero config get --show-password
00:54:59 2026-03-18 00:54:59,314 [omego.extern] INFO Completed [2.014 s]
00:54:59 2026-03-18 00:54:59,314 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:54:59 2026-03-18 00:54:59,314 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
00:54:59 2026-03-18 00:54:59,562 [omego.extern] INFO Completed [0.248 s]
00:54:59 2026-03-18 00:54:59,562 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.11\n'
00:54:59 2026-03-18 00:54:59,562 [ omego.db] INFO psql version: psql (PostgreSQL) 16.11
00:54:59
00:54:59 2026-03-18 00:54:59,562 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:54:59 2026-03-18 00:54:59,562 [omego.extern] INFO Executing : omero config get --show-password
00:55:01 2026-03-18 00:55:01,616 [omego.extern] INFO Completed [2.054 s]
00:55:01 2026-03-18 00:55:01,616 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:55:01 2026-03-18 00:55:01,616 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
00:55:01 2026-03-18 00:55:01,848 [omego.extern] INFO Completed [0.231 s]
00:55:01 2026-03-18 00:55:01,848 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.2") at port "5432".\n'
00:55:01 2026-03-18 00:55:01,848 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:55:01 2026-03-18 00:55:01,848 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:55:01 2026-03-18 00:55:01,848 [omego.extern] INFO Executing : omero config get --show-password
00:55:03 2026-03-18 00:55:03,865 [omego.extern] INFO Completed [2.018 s]
00:55:03 2026-03-18 00:55:03,866 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:55:03 2026-03-18 00:55:03,866 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:55:04 2026-03-18 00:55:04,339 [omego.extern] INFO Completed [0.473 s]
00:55:04 2026-03-18 00:55:04,339 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
00:55:04 2026-03-18 00:55:04,339 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
00:55:04 2026-03-18 00:55:04,340 [ omego.db] INFO Database is already at OMERO5.4__0
00:55:04 + export LANG=en_US.UTF-8
00:55:04 + LANG=en_US.UTF-8
00:55:04 + export LANGUAGE=en_US:en
00:55:04 + LANGUAGE=en_US:en
00:55:04 + export LC_ALL=en_US.UTF-8
00:55:04 + LC_ALL=en_US.UTF-8
00:55:04 + BUILD_ID=DONT_KILL_ME
00:55:04 + omero admin start
00:55:09 No descriptor given. Using etc/grid/default.xml
00:55:20 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
00:55:20 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
00:55:20 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
00:55:20 Waiting on startup. Use CTRL-C to exit
00:55:20 + omero admin waitup
00:55:22 Waiting on startup. Use CTRL-C to exit
00:55:23 + omero admin diagnostics
00:55:25
00:55:25 ================================================================================
00:55:25 OMERO Diagnostics (admin)
00:55:25 ================================================================================
00:55:25
00:55:25 Commands: java -version 17.0.17 (/usr/bin/java)
00:55:25 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
00:55:25 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
00:55:25 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
00:55:25 Commands: psql --version 16.11 (/usr/bin/psql)
00:55:25 Commands: openssl version 3.5.11 (/usr/bin/openssl)
00:55:25
00:55:25 Component: OMERO.py 5.22.1.dev0
00:55:25 Component: OMERO.server 5.6.3-594-d1dbc52077-ice36-b83
00:55:25
00:55:25 Server: icegridnode running
00:55:25 Server: Blitz-0 active (pid = 3376, enabled)
00:55:25 Server: Indexer-0 activating (enabled)
00:55:25 Server: OMERO.Glacier2 active (pid = 3409, enabled)
00:55:25 Server: OMERO.IceStorm active (pid = 3439, enabled)
00:55:25 Server: Processor-0 activating (enabled)
00:55:25 Server: Tables-0 activating (enabled)
00:55:25
00:55:25 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
00:55:25 Log files: Blitz-0.log 23.7 KB errors=0 warnings=1
00:55:25 Log files: DropBox.log n/a
00:55:25 Log files: FileServer.log n/a
00:55:25 Log files: Indexer-0.log 2.4 KB
00:55:25 Log files: MonitorServer.log n/a
00:55:25 Log files: Processor-0.log 592 B
00:55:25 Log files: Tables-0.log 841 B
00:55:25 Log files: TestDropBox.log n/a
00:55:25 Log files: master.err empty
00:55:25 Log files: master.out 30.5 KB
00:55:25 Log files: Total size 0.06 MB
00:55:25
00:55:25
00:55:25 Environment:OMERO_HOME=(unset)
00:55:25 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:55:25 Environment:OMERO_NODE=(unset)
00:55:25 Environment:OMERO_MASTER=(unset)
00:55:25 Environment:OMERO_USERDIR=(unset)
00:55:25 Environment:OMERO_TMPDIR=(unset)
00:55:25 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:55:25 Environment:PYTHONPATH=(unset)
00:55:25 Environment:ICE_HOME=/opt/ice-3.6.5
00:55:25 Environment:LD_LIBRARY_PATH=(unset)
00:55:25 Environment:DYLD_LIBRARY_PATH=(unset)
00:55:25
00:55:25 OMERO SSL port:4064
00:55:25 OMERO TCP port:4063
00:55:25 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
00:55:25 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
00:55:25
00:55:25 JVM settings: Blitz-${index} -Xmx7200m
00:55:25 JVM settings: Indexer-${index} -Xmx4800m
00:55:25 JVM settings: PixelData-${index} -Xmx7200m
00:55:25 JVM settings: Repository-${index} -Xmx4800m
00:55:25
00:55:25 Jar: lib/server/formats-api.jar Bio-Formats API 8.5.0-SNAPSHOT 18 March 2026 eaa9dbdcf6261826c50e303923346a3988e8162e
00:55:25 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.5.0-SNAPSHOT 18 March 2026 eaa9dbdcf6261826c50e303923346a3988e8162e
00:55:25 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.5.0-SNAPSHOT 18 March 2026 eaa9dbdcf6261826c50e303923346a3988e8162e
00:55:25 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.4-SNAPSHOT 18 March 2026 9001a01ba27b574042c4835261fe3bc1b5dd1d1a
00:55:25 Jar: lib/server/ome-common.jar OME Common Java 6.2.2-SNAPSHOT 18 March 2026 9001a01ba27b574042c4835261fe3bc1b5dd1d1a
00:55:25 Jar: lib/server/ome-jai.jar OME JAI 0.1.6-SNAPSHOT 18 March 2026 9001a01ba27b574042c4835261fe3bc1b5dd1d1a
00:55:25 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.5-SNAPSHOT 18 March 2026 9001a01ba27b574042c4835261fe3bc1b5dd1d1a
00:55:25 Jar: lib/server/ome-poi.jar OME POI 5.3.11-SNAPSHOT 18 March 2026 9001a01ba27b574042c4835261fe3bc1b5dd1d1a
00:55:25 Jar: lib/server/ome-xml.jar OME XML library 6.5.4-SNAPSHOT 18 March 2026 9001a01ba27b574042c4835261fe3bc1b5dd1d1a
00:55:25 Jar: lib/server/omero-blitz.jar jar 5.8.5-SNAPSHOT
00:55:25 Jar: lib/server/omero-common.jar jar 5.7.5-SNAPSHOT
00:55:25 Jar: lib/server/omero-gateway.jar jar 5.10.6-SNAPSHOT
00:55:25 Jar: lib/server/omero-model.jar jar 5.7.5-SNAPSHOT
00:55:25 Jar: lib/server/omero-renderer.jar jar 5.6.5-SNAPSHOT
00:55:25 Jar: lib/server/omero-romio.jar jar 5.8.5-SNAPSHOT
00:55:25 Jar: lib/server/omero-server.jar jar 5.7.5-SNAPSHOT
00:55:25 Jar: lib/server/omero-zarr-pixel-buffer-0.6.2-SNAPSHOT.jar OMERO Zarr Pixel Buffer 0.6.2-SNAPSHOT b07df5cd1ece44b6532d46b23dcea3b320949474
00:55:26 + deactivate
00:55:26 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:55:26 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:55:26 + export PATH
00:55:26 + unset _OLD_VIRTUAL_PATH
00:55:26 + '[' -n '' ']'
00:55:26 + hash -r
00:55:26 + '[' -n '' ']'
00:55:26 + unset VIRTUAL_ENV
00:55:26 + unset VIRTUAL_ENV_PROMPT
00:55:26 + '[' '!' '' = nondestructive ']'
00:55:26 + unset -f deactivate
00:55:26 Finished: SUCCESS
