00:46:00 Started by upstream project "Trigger" build number 138
00:46:00 originally caused by:
00:46:00 Started by timer
00:46:00 Running as SYSTEM
00:46:00 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
00:46:01 [OMERO-server] $ /bin/bash -xe /tmp/jenkins16264365962691733693.sh
00:46:01 + source /home/settings.env
00:46:01 ++ OMERO_DB_HOST=pg
00:46:01 ++ OMERO_DB_USER=postgres
00:46:01 ++ OMERO_DB_PASS=
00:46:01 ++ OMERO_ROOT_PASS=omero
00:46:01 ++ OMERO_DATA_DIR=/OMERO
00:46:01 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:46:01 + OMERO_DB_NAME=OMERO-server
00:46:01 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:46:01 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:46:01 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:46:01 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:46:01 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
00:46:01 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:46:01 ++ deactivate nondestructive
00:46:01 ++ '[' -n '' ']'
00:46:01 ++ '[' -n '' ']'
00:46:01 ++ hash -r
00:46:01 ++ '[' -n '' ']'
00:46:01 ++ unset VIRTUAL_ENV
00:46:01 ++ unset VIRTUAL_ENV_PROMPT
00:46:01 ++ '[' '!' nondestructive = nondestructive ']'
00:46:01 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:46:01 ++ export VIRTUAL_ENV
00:46:01 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:46:01 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:46:01 ++ export PATH
00:46:01 ++ '[' -n '' ']'
00:46:01 ++ '[' -z '' ']'
00:46:01 ++ _OLD_VIRTUAL_PS1=
00:46:01 ++ PS1='(.venv3) '
00:46:01 ++ export PS1
00:46:01 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:46:01 ++ export VIRTUAL_ENV_PROMPT
00:46:01 ++ hash -r
00:46:01 + omero admin stop
00:46:02 Waiting on shutdown. Use CTRL-C to exit
00:46:02 .+ sleep 5
00:46:18 + deactivate
00:46:18 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:46:18 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:46:18 + export PATH
00:46:18 + unset _OLD_VIRTUAL_PATH
00:46:18 + '[' -n '' ']'
00:46:18 + hash -r
00:46:18 + '[' -n '' ']'
00:46:18 + unset VIRTUAL_ENV
00:46:18 + unset VIRTUAL_ENV_PROMPT
00:46:18 + '[' '!' '' = nondestructive ']'
00:46:18 + unset -f deactivate
00:46:18 + rm -rf /home/omero/workspace/OMERO-server/.venv3
00:46:18 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
00:46:22 + '[' false = true ']'
00:46:22 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
00:46:22 Skipping PURGE_DATA:CleanDbAndRepo
00:46:22 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.5-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.22.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.31.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
00:46:24 Copied 1 artifact from "OMERO-build" build number 106
00:46:24 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 102
00:46:24 Copied 2 artifacts from "OMERO-build-build" build number 110
00:46:24 Copied 1 artifact from "OMERO-zarr-pixel-buffer-build" build number 91
00:46:24 [OMERO-server] $ /bin/bash -xe /tmp/jenkins7330353665747788805.sh
00:46:24 + source /home/settings.env
00:46:24 ++ OMERO_DB_HOST=pg
00:46:24 ++ OMERO_DB_USER=postgres
00:46:24 ++ OMERO_DB_PASS=
00:46:24 ++ OMERO_ROOT_PASS=omero
00:46:24 ++ OMERO_DATA_DIR=/OMERO
00:46:24 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:46:24 + OMERO_DB_NAME=OMERO-server
00:46:24 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:46:24 + mkdir -p /home/omero/omero-server-data
00:46:24 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:46:24 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:46:24 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:46:24 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:46:24 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:46:24 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:46:24 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:46:24 ++ ls OMERO.server-5.6.3-594-11f9482197-ice36-b106.zip
00:46:24 + ZIP=OMERO.server-5.6.3-594-11f9482197-ice36-b106.zip
00:46:24 + '[' '!' -z '' ']'
00:46:24 + DIST=OMERO.server-5.6.3-594-11f9482197-ice36-b106
00:46:24 + unzip OMERO.server-5.6.3-594-11f9482197-ice36-b106.zip
00:46:24 Archive: OMERO.server-5.6.3-594-11f9482197-ice36-b106.zip
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/etc/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/etc/blitz/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/etc/grid/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/etc/profiles/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/etc/templates/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/etc/templates/error/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/etc/templates/grid/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/client/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/scripts/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/scripts/luts/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/scripts/luts/janelia/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/scripts/luts/matplotlib/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/scripts/luts/ncsa_paledit/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/scripts/luts/seaborn/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/scripts/luts/wcif/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/scripts/omero/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/scripts/omero/analysis_scripts/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/scripts/omero/annotation_scripts/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/scripts/omero/export_scripts/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/scripts/omero/figure_scripts/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/scripts/omero/import_scripts/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/scripts/omero/util_scripts/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/server/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/share/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/share/licenses/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/sql/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/sql/misc/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/sql/psql/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/sql/psql/OMERO3A__1/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/sql/psql/OMERO3A__10/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/sql/psql/OMERO3A__11/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/sql/psql/OMERO3A__2/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/sql/psql/OMERO3A__3/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/sql/psql/OMERO3A__4/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/sql/psql/OMERO3A__5/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/sql/psql/OMERO3A__6/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/sql/psql/OMERO3A__7/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/sql/psql/OMERO3A__8/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/sql/psql/OMERO3A__9/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/sql/psql/OMERO3__4/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/sql/psql/OMERO3__5/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/sql/psql/OMERO3__6/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/sql/psql/OMERO3__7/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/sql/psql/OMERO4.1__0/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/sql/psql/OMERO4.2__0/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/sql/psql/OMERO4.2__0/t/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/sql/psql/OMERO4.3__0/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/sql/psql/OMERO4.4__0/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/sql/psql/OMERO4__0/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/sql/psql/OMERO5.0__0/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/sql/psql/OMERO5.1__1/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/sql/psql/OMERO5.2__0/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/sql/psql/OMERO5.3__0/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/sql/psql/OMERO5.4DEV__1/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/sql/psql/OMERO5.4DEV__2/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/sql/psql/OMERO5.4DEV__3/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/sql/psql/OMERO5.4__0/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/var/
00:46:24 creating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/var/tmp/
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/LICENSE.txt
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/etc/backup.cfg
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/etc/blitz/mail-senders.example
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/etc/blitz/mail-server.example
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/etc/build.properties
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/etc/env.bat
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/etc/env.sh
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/etc/hibernate.properties
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/etc/ice.config
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/etc/logback-cli.xml
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/etc/logback-indexing-cli.xml
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/etc/logback-indexing.xml
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/etc/logback.xml
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/etc/mime.types
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/etc/node1.cfg
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/etc/node2.cfg
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/etc/omero.properties
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/etc/profiles/psql
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/etc/rollover.cfg
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/etc/templates/Windows.cfg
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/etc/templates/error/maintainance.html
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/etc/templates/grid/README
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/etc/templates/grid/default.xml
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/etc/templates/grid/templates.xml
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/etc/templates/grid/windefault.xml
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/etc/templates/ice.config
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/etc/templates/internal.cfg
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/etc/templates/master.cfg
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/etc/templates/robot.template
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/etc/testdropbox.config
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/history.rst
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/client/OMEZarrReader.jar
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/client/accessors-smart.jar
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/client/activation.jar
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/client/aggdesigner-algorithm.jar
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/client/aircompressor.jar
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/client/antlr.jar
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/client/aopalliance.jar
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/client/apiguardian-api.jar
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/client/asm.jar
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/client/avatica-core.jar
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/client/avatica-metrics.jar
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/client/aws-java-sdk-core.jar
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/client/aws-java-sdk-kms.jar
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/client/aws-java-sdk-s3.jar
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/client/base.jar
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/client/batik-anim.jar
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/client/batik-awt-util.jar
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/client/batik-bridge.jar
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/client/batik-codec.jar
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/client/batik-constants.jar
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/client/batik-css.jar
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/client/batik-dom.jar
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/client/batik-ext.jar
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/client/batik-gvt.jar
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/client/batik-i18n.jar
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/client/batik-parser.jar
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/client/batik-script.jar
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/client/batik-shared-resources.jar
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/client/batik-svg-dom.jar
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/client/batik-svggen.jar
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/client/batik-transcoder.jar
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/client/batik-util.jar
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/client/batik-xml.jar
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/client/btm.jar
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/client/calcite-core.jar
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/client/calcite-linq4j.jar
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/client/cdm-core.jar
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/client/checker-qual.jar
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/client/commons-beanutils.jar
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/client/commons-codec.jar
00:46:24 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/lib/client/commons-collections.jar
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00:46:26 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
00:46:26 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
00:46:26 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/sql/psql/OMERO5.4__0/psql-footer.sql
00:46:26 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/sql/psql/OMERO5.4__0/psql-header.sql
00:46:26 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/sql/psql/OMERO5.4__0/schema.sql
00:46:26 inflating: OMERO.server-5.6.3-594-11f9482197-ice36-b106/sql/psql/OMERO5.4__0/views.sql
00:46:26 + rm -f OMERO.server-5.6.3-594-11f9482197-ice36-b106.zip
00:46:26 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-594-11f9482197-ice36-b106 /home/omero/workspace/OMERO-server/OMERO.server
00:46:26 + jacksonVersion=2.20.0
00:46:26 + awsSdkVersion=2.34.6
00:46:26 + reactiveStreamsVersion=1.0.4
00:46:26 + zarrJavaVersion=0.1.0
00:46:26 + rm -f '/home/omero/workspace/OMERO-server/OMERO.server/lib/server/omero-zarr-pixel-buffer*.jar' '/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine*.jar' /home/omero/workspace/OMERO-server/OMERO.server/lib/server/jzarr.jar '/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3fs*.jar' /home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-core.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-kms.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3.jar
00:46:26 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
00:46:26 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:26 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:26 --2026-04-11 00:46:26-- https://repo.maven.apache.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
00:46:26 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:46:26 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
00:46:26 HTTP request sent, awaiting response... 200 OK
00:46:27 Length: 889211 (868K) [application/java-archive]
00:46:27 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’
00:46:27
00:46:27 0K .......... .......... .......... .......... .......... 5% 16.8M 0s
00:46:27 50K .......... .......... .......... .......... .......... 11% 3.10M 0s
00:46:27 100K .......... .......... .......... .......... .......... 17% 3.47M 0s
00:46:27 150K .......... .......... .......... .......... .......... 23% 13.7M 0s
00:46:27 200K .......... .......... .......... .......... .......... 28% 12.5M 0s
00:46:27 250K .......... .......... .......... .......... .......... 34% 10.3M 0s
00:46:27 300K .......... .......... .......... .......... .......... 40% 13.7M 0s
00:46:27 350K .......... .......... .......... .......... .......... 46% 12.2M 0s
00:46:27 400K .......... .......... .......... .......... .......... 51% 17.7M 0s
00:46:27 450K .......... .......... .......... .......... .......... 57% 16.7M 0s
00:46:27 500K .......... .......... .......... .......... .......... 63% 12.9M 0s
00:46:27 550K .......... .......... .......... .......... .......... 69% 12.7M 0s
00:46:27 600K .......... .......... .......... .......... .......... 74% 23.4M 0s
00:46:27 650K .......... .......... .......... .......... .......... 80% 13.6M 0s
00:46:27 700K .......... .......... .......... .......... .......... 86% 23.1M 0s
00:46:27 750K .......... .......... .......... .......... .......... 92% 8.74M 0s
00:46:27 800K .......... .......... .......... .......... .......... 97% 10.4M 0s
00:46:27 850K .......... ........ 100% 327M=0.08s
00:46:27
00:46:27 2026-04-11 00:46:27 (10.1 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’ saved [889211/889211]
00:46:27
00:46:27 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/dev/zarr/zarr-java/0.1.0/zarr-java-0.1.0.jar
00:46:27 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:27 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:27 --2026-04-11 00:46:27-- https://repo.maven.apache.org/maven2/dev/zarr/zarr-java/0.1.0/zarr-java-0.1.0.jar
00:46:27 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:46:27 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
00:46:27 HTTP request sent, awaiting response... 200 OK
00:46:27 Length: 183560 (179K) [application/java-archive]
00:46:27 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zarr-java-0.1.0.jar’
00:46:27
00:46:27 0K .......... .......... .......... .......... .......... 27% 15.6M 0s
00:46:27 50K .......... .......... .......... .......... .......... 55% 3.15M 0s
00:46:27 100K .......... .......... .......... .......... .......... 83% 3.56M 0s
00:46:27 150K .......... .......... ......... 100% 20.7M=0.03s
00:46:27
00:46:27 2026-04-11 00:46:27 (5.19 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zarr-java-0.1.0.jar’ saved [183560/183560]
00:46:27
00:46:27 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/scalableminds/blosc-java/0.1-1.21.4/blosc-java-0.1-1.21.4.jar
00:46:27 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:27 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:27 --2026-04-11 00:46:27-- https://repo1.maven.org/maven2/com/scalableminds/blosc-java/0.1-1.21.4/blosc-java-0.1-1.21.4.jar
00:46:27 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:46:27 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:46:27 HTTP request sent, awaiting response... 200 OK
00:46:27 Length: 1732435 (1.7M) [application/java-archive]
00:46:27 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/blosc-java-0.1-1.21.4.jar’
00:46:27
00:46:27 0K .......... .......... .......... .......... .......... 2% 15.8M 0s
00:46:27 50K .......... .......... .......... .......... .......... 5% 3.18M 0s
00:46:27 100K .......... .......... .......... .......... .......... 8% 3.60M 0s
00:46:27 150K .......... .......... .......... .......... .......... 11% 15.1M 0s
00:46:27 200K .......... .......... .......... .......... .......... 14% 13.1M 0s
00:46:27 250K .......... .......... .......... .......... .......... 17% 12.9M 0s
00:46:27 300K .......... .......... .......... .......... .......... 20% 12.6M 0s
00:46:27 350K .......... .......... .......... .......... .......... 23% 16.5M 0s
00:46:27 400K .......... .......... .......... .......... .......... 26% 17.2M 0s
00:46:27 450K .......... .......... .......... .......... .......... 29% 18.9M 0s
00:46:27 500K .......... .......... .......... .......... .......... 32% 12.7M 0s
00:46:27 550K .......... .......... .......... .......... .......... 35% 12.5M 0s
00:46:27 600K .......... .......... .......... .......... .......... 38% 12.5M 0s
00:46:27 650K .......... .......... .......... .......... .......... 41% 24.5M 0s
00:46:27 700K .......... .......... .......... .......... .......... 44% 17.0M 0s
00:46:27 750K .......... .......... .......... .......... .......... 47% 14.2M 0s
00:46:27 800K .......... .......... .......... .......... .......... 50% 12.9M 0s
00:46:27 850K .......... .......... .......... .......... .......... 53% 12.3M 0s
00:46:27 900K .......... .......... .......... .......... .......... 56% 22.6M 0s
00:46:27 950K .......... .......... .......... .......... .......... 59% 30.4M 0s
00:46:27 1000K .......... .......... .......... .......... .......... 62% 10.7M 0s
00:46:27 1050K .......... .......... .......... .......... .......... 65% 13.1M 0s
00:46:27 1100K .......... .......... .......... .......... .......... 67% 20.3M 0s
00:46:27 1150K .......... .......... .......... .......... .......... 70% 12.2M 0s
00:46:27 1200K .......... .......... .......... .......... .......... 73% 33.0M 0s
00:46:27 1250K .......... .......... .......... .......... .......... 76% 7.78M 0s
00:46:27 1300K .......... .......... .......... .......... .......... 79% 86.9M 0s
00:46:27 1350K .......... .......... .......... .......... .......... 82% 8.83M 0s
00:46:27 1400K .......... .......... .......... .......... .......... 85% 14.2M 0s
00:46:27 1450K .......... .......... .......... .......... .......... 88% 16.7M 0s
00:46:27 1500K .......... .......... .......... .......... .......... 91% 17.0M 0s
00:46:27 1550K .......... .......... .......... .......... .......... 94% 13.3M 0s
00:46:27 1600K .......... .......... .......... .......... .......... 97% 18.3M 0s
00:46:27 1650K .......... .......... .......... .......... . 100% 12.5M=0.1s
00:46:27
00:46:27 2026-04-11 00:46:27 (12.3 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/blosc-java-0.1-1.21.4.jar’ saved [1732435/1732435]
00:46:27
00:46:27 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/squareup/okhttp/okhttp/2.7.5/okhttp-2.7.5.jar
00:46:27 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:27 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:27 --2026-04-11 00:46:27-- https://repo1.maven.org/maven2/com/squareup/okhttp/okhttp/2.7.5/okhttp-2.7.5.jar
00:46:28 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:46:28 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:46:28 HTTP request sent, awaiting response... 200 OK
00:46:28 Length: 331034 (323K) [application/java-archive]
00:46:28 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/okhttp-2.7.5.jar’
00:46:28
00:46:28 0K .......... .......... .......... .......... .......... 15% 16.0M 0s
00:46:28 50K .......... .......... .......... .......... .......... 30% 3.27M 0s
00:46:28 100K .......... .......... .......... .......... .......... 46% 11.0M 0s
00:46:28 150K .......... .......... .......... .......... .......... 61% 4.12M 0s
00:46:28 200K .......... .......... .......... .......... .......... 77% 12.9M 0s
00:46:28 250K .......... .......... .......... .......... .......... 92% 11.0M 0s
00:46:28 300K .......... .......... ... 100% 26.4M=0.04s
00:46:28
00:46:28 2026-04-11 00:46:28 (7.27 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/okhttp-2.7.5.jar’ saved [331034/331034]
00:46:28
00:46:28 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/datatype/jackson-datatype-jdk8/2.20.0/jackson-datatype-jdk8-2.20.0.jar
00:46:28 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:28 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:28 --2026-04-11 00:46:28-- https://repo1.maven.org/maven2/com/fasterxml/jackson/datatype/jackson-datatype-jdk8/2.20.0/jackson-datatype-jdk8-2.20.0.jar
00:46:28 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:46:28 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:46:28 HTTP request sent, awaiting response... 200 OK
00:46:28 Length: 36400 (36K) [application/java-archive]
00:46:28 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-datatype-jdk8-2.20.0.jar’
00:46:28
00:46:28 0K .......... .......... .......... ..... 100% 16.8M=0.002s
00:46:28
00:46:28 2026-04-11 00:46:28 (16.8 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-datatype-jdk8-2.20.0.jar’ saved [36400/36400]
00:46:28
00:46:28 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/s3/2.34.6/s3-2.34.6.jar
00:46:28 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:28 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:28 --2026-04-11 00:46:28-- https://repo1.maven.org/maven2/software/amazon/awssdk/s3/2.34.6/s3-2.34.6.jar
00:46:28 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:46:28 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:46:28 HTTP request sent, awaiting response... 200 OK
00:46:28 Length: 4083366 (3.9M) [application/java-archive]
00:46:28 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3-2.34.6.jar’
00:46:28
00:46:28 0K .......... .......... .......... .......... .......... 1% 16.1M 0s
00:46:28 50K .......... .......... .......... .......... .......... 2% 3.23M 1s
00:46:28 100K .......... .......... .......... .......... .......... 3% 11.2M 1s
00:46:28 150K .......... .......... .......... .......... .......... 5% 3.89M 1s
00:46:28 200K .......... .......... .......... .......... .......... 6% 13.0M 1s
00:46:28 250K .......... .......... .......... .......... .......... 7% 17.1M 1s
00:46:28 300K .......... .......... .......... .......... .......... 8% 10.7M 0s
00:46:28 350K .......... .......... .......... .......... .......... 10% 15.9M 0s
00:46:28 400K .......... .......... .......... .......... .......... 11% 17.3M 0s
00:46:28 450K .......... .......... .......... .......... .......... 12% 13.1M 0s
00:46:28 500K .......... .......... .......... .......... .......... 13% 16.5M 0s
00:46:28 550K .......... .......... .......... .......... .......... 15% 13.2M 0s
00:46:28 600K .......... .......... .......... .......... .......... 16% 12.0M 0s
00:46:28 650K .......... .......... .......... .......... .......... 17% 26.9M 0s
00:46:28 700K .......... .......... .......... .......... .......... 18% 12.6M 0s
00:46:28 750K .......... .......... .......... .......... .......... 20% 12.7M 0s
00:46:28 800K .......... .......... .......... .......... .......... 21% 10.6M 0s
00:46:28 850K .......... .......... .......... .......... .......... 22% 19.1M 0s
00:46:28 900K .......... .......... .......... .......... .......... 23% 24.7M 0s
00:46:28 950K .......... .......... .......... .......... .......... 25% 11.2M 0s
00:46:28 1000K .......... .......... .......... .......... .......... 26% 32.5M 0s
00:46:28 1050K .......... .......... .......... .......... .......... 27% 15.3M 0s
00:46:28 1100K .......... .......... .......... .......... .......... 28% 6.88M 0s
00:46:28 1150K .......... .......... .......... .......... .......... 30% 103M 0s
00:46:28 1200K .......... .......... .......... .......... .......... 31% 11.3M 0s
00:46:28 1250K .......... .......... .......... .......... .......... 32% 38.6M 0s
00:46:28 1300K .......... .......... .......... .......... .......... 33% 14.8M 0s
00:46:28 1350K .......... .......... .......... .......... .......... 35% 13.2M 0s
00:46:28 1400K .......... .......... .......... .......... .......... 36% 11.0M 0s
00:46:28 1450K .......... .......... .......... .......... .......... 37% 17.3M 0s
00:46:28 1500K .......... .......... .......... .......... .......... 38% 16.4M 0s
00:46:28 1550K .......... .......... .......... .......... .......... 40% 19.7M 0s
00:46:28 1600K .......... .......... .......... .......... .......... 41% 13.8M 0s
00:46:28 1650K .......... .......... .......... .......... .......... 42% 9.82M 0s
00:46:28 1700K .......... .......... .......... .......... .......... 43% 16.3M 0s
00:46:28 1750K .......... .......... .......... .......... .......... 45% 22.0M 0s
00:46:28 1800K .......... .......... .......... .......... .......... 46% 18.5M 0s
00:46:28 1850K .......... .......... .......... .......... .......... 47% 13.7M 0s
00:46:28 1900K .......... .......... .......... .......... .......... 48% 9.14M 0s
00:46:28 1950K .......... .......... .......... .......... .......... 50% 19.6M 0s
00:46:28 2000K .......... .......... .......... .......... .......... 51% 20.8M 0s
00:46:28 2050K .......... .......... .......... .......... .......... 52% 18.9M 0s
00:46:28 2100K .......... .......... .......... .......... .......... 53% 13.6M 0s
00:46:28 2150K .......... .......... .......... .......... .......... 55% 9.98M 0s
00:46:28 2200K .......... .......... .......... .......... .......... 56% 17.7M 0s
00:46:28 2250K .......... .......... .......... .......... .......... 57% 18.1M 0s
00:46:28 2300K .......... .......... .......... .......... .......... 58% 18.1M 0s
00:46:28 2350K .......... .......... .......... .......... .......... 60% 14.0M 0s
00:46:28 2400K .......... .......... .......... .......... .......... 61% 10.4M 0s
00:46:28 2450K .......... .......... .......... .......... .......... 62% 17.9M 0s
00:46:28 2500K .......... .......... .......... .......... .......... 63% 17.8M 0s
00:46:28 2550K .......... .......... .......... .......... .......... 65% 17.3M 0s
00:46:28 2600K .......... .......... .......... .......... .......... 66% 14.3M 0s
00:46:28 2650K .......... .......... .......... .......... .......... 67% 10.1M 0s
00:46:28 2700K .......... .......... .......... .......... .......... 68% 23.9M 0s
00:46:28 2750K .......... .......... .......... .......... .......... 70% 13.3M 0s
00:46:29 2800K .......... .......... .......... .......... .......... 71% 21.0M 0s
00:46:29 2850K .......... .......... .......... .......... .......... 72% 15.2M 0s
00:46:29 2900K .......... .......... .......... .......... .......... 73% 14.0M 0s
00:46:29 2950K .......... .......... .......... .......... .......... 75% 14.0M 0s
00:46:29 3000K .......... .......... .......... .......... .......... 76% 13.4M 0s
00:46:29 3050K .......... .......... .......... .......... .......... 77% 15.0M 0s
00:46:29 3100K .......... .......... .......... .......... .......... 78% 17.8M 0s
00:46:29 3150K .......... .......... .......... .......... .......... 80% 13.3M 0s
00:46:29 3200K .......... .......... .......... .......... .......... 81% 16.4M 0s
00:46:29 3250K .......... .......... .......... .......... .......... 82% 13.4M 0s
00:46:29 3300K .......... .......... .......... .......... .......... 84% 16.0M 0s
00:46:29 3350K .......... .......... .......... .......... .......... 85% 20.4M 0s
00:46:29 3400K .......... .......... .......... .......... .......... 86% 11.7M 0s
00:46:29 3450K .......... .......... .......... .......... .......... 87% 16.7M 0s
00:46:29 3500K .......... .......... .......... .......... .......... 89% 12.2M 0s
00:46:29 3550K .......... .......... .......... .......... .......... 90% 17.8M 0s
00:46:29 3600K .......... .......... .......... .......... .......... 91% 19.3M 0s
00:46:29 3650K .......... .......... .......... .......... .......... 92% 12.2M 0s
00:46:29 3700K .......... .......... .......... .......... .......... 94% 20.9M 0s
00:46:29 3750K .......... .......... .......... .......... .......... 95% 25.6M 0s
00:46:29 3800K .......... .......... .......... .......... .......... 96% 8.16M 0s
00:46:29 3850K .......... .......... .......... .......... .......... 97% 23.5M 0s
00:46:29 3900K .......... .......... .......... .......... .......... 99% 12.3M 0s
00:46:29 3950K .......... .......... .......... ....... 100% 26.1M=0.3s
00:46:29
00:46:29 2026-04-11 00:46:29 (13.8 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3-2.34.6.jar’ saved [4083366/4083366]
00:46:29
00:46:29 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/auth/2.34.6/auth-2.34.6.jar
00:46:29 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:29 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:29 --2026-04-11 00:46:29-- https://repo1.maven.org/maven2/software/amazon/awssdk/auth/2.34.6/auth-2.34.6.jar
00:46:29 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:46:29 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:46:29 HTTP request sent, awaiting response... 200 OK
00:46:29 Length: 234962 (229K) [application/java-archive]
00:46:29 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/auth-2.34.6.jar’
00:46:29
00:46:29 0K .......... .......... .......... .......... .......... 21% 15.9M 0s
00:46:29 50K .......... .......... .......... .......... .......... 43% 3.24M 0s
00:46:29 100K .......... .......... .......... .......... .......... 65% 10.9M 0s
00:46:29 150K .......... .......... .......... .......... .......... 87% 4.13M 0s
00:46:29 200K .......... .......... ......... 100% 10.7M=0.04s
00:46:29
00:46:29 2026-04-11 00:46:29 (6.03 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/auth-2.34.6.jar’ saved [234962/234962]
00:46:29
00:46:29 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/aws-core/2.34.6/aws-core-2.34.6.jar
00:46:29 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:29 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:29 --2026-04-11 00:46:29-- https://repo1.maven.org/maven2/software/amazon/awssdk/aws-core/2.34.6/aws-core-2.34.6.jar
00:46:29 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:46:29 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:46:29 HTTP request sent, awaiting response... 200 OK
00:46:29 Length: 192161 (188K) [application/java-archive]
00:46:29 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-core-2.34.6.jar’
00:46:29
00:46:29 0K .......... .......... .......... .......... .......... 26% 15.2M 0s
00:46:29 50K .......... .......... .......... .......... .......... 53% 3.27M 0s
00:46:29 100K .......... .......... .......... .......... .......... 79% 11.0M 0s
00:46:29 150K .......... .......... .......... ....... 100% 3.38M=0.03s
00:46:29
00:46:29 2026-04-11 00:46:29 (5.48 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-core-2.34.6.jar’ saved [192161/192161]
00:46:29
00:46:29 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/sdk-core/2.34.6/sdk-core-2.34.6.jar
00:46:29 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:29 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:29 --2026-04-11 00:46:29-- https://repo1.maven.org/maven2/software/amazon/awssdk/sdk-core/2.34.6/sdk-core-2.34.6.jar
00:46:29 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:46:29 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:46:29 HTTP request sent, awaiting response... 200 OK
00:46:29 Length: 1037104 (1013K) [application/java-archive]
00:46:29 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/sdk-core-2.34.6.jar’
00:46:29
00:46:29 0K .......... .......... .......... .......... .......... 4% 15.1M 0s
00:46:29 50K .......... .......... .......... .......... .......... 9% 3.02M 0s
00:46:29 100K .......... .......... .......... .......... .......... 14% 12.7M 0s
00:46:29 150K .......... .......... .......... .......... .......... 19% 3.81M 0s
00:46:30 200K .......... .......... .......... .......... .......... 24% 12.7M 0s
00:46:30 250K .......... .......... .......... .......... .......... 29% 13.2M 0s
00:46:30 300K .......... .......... .......... .......... .......... 34% 9.16M 0s
00:46:30 350K .......... .......... .......... .......... .......... 39% 19.3M 0s
00:46:30 400K .......... .......... .......... .......... .......... 44% 14.5M 0s
00:46:30 450K .......... .......... .......... .......... .......... 49% 13.1M 0s
00:46:30 500K .......... .......... .......... .......... .......... 54% 17.0M 0s
00:46:30 550K .......... .......... .......... .......... .......... 59% 13.6M 0s
00:46:30 600K .......... .......... .......... .......... .......... 64% 11.5M 0s
00:46:30 650K .......... .......... .......... .......... .......... 69% 18.0M 0s
00:46:30 700K .......... .......... .......... .......... .......... 74% 13.7M 0s
00:46:30 750K .......... .......... .......... .......... .......... 78% 17.0M 0s
00:46:30 800K .......... .......... .......... .......... .......... 83% 14.4M 0s
00:46:30 850K .......... .......... .......... .......... .......... 88% 11.3M 0s
00:46:30 900K .......... .......... .......... .......... .......... 93% 16.8M 0s
00:46:30 950K .......... .......... .......... .......... .......... 98% 13.3M 0s
00:46:30 1000K .......... .. 100% 227M=0.09s
00:46:30
00:46:30 2026-04-11 00:46:30 (10.7 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/sdk-core-2.34.6.jar’ saved [1037104/1037104]
00:46:30
00:46:30 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/annotations/2.34.6/annotations-2.34.6.jar
00:46:30 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:30 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:30 --2026-04-11 00:46:30-- https://repo1.maven.org/maven2/software/amazon/awssdk/annotations/2.34.6/annotations-2.34.6.jar
00:46:30 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:46:30 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:46:30 HTTP request sent, awaiting response... 200 OK
00:46:30 Length: 13758 (13K) [application/java-archive]
00:46:30 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/annotations-2.34.6.jar’
00:46:30
00:46:30 0K .......... ... 100% 30.8M=0s
00:46:30
00:46:30 2026-04-11 00:46:30 (30.8 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/annotations-2.34.6.jar’ saved [13758/13758]
00:46:30
00:46:30 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/regions/2.34.6/regions-2.34.6.jar
00:46:30 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:30 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:30 --2026-04-11 00:46:30-- https://repo1.maven.org/maven2/software/amazon/awssdk/regions/2.34.6/regions-2.34.6.jar
00:46:30 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:46:30 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:46:30 HTTP request sent, awaiting response... 200 OK
00:46:30 Length: 962220 (940K) [application/java-archive]
00:46:30 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/regions-2.34.6.jar’
00:46:30
00:46:30 0K .......... .......... .......... .......... .......... 5% 14.4M 0s
00:46:30 50K .......... .......... .......... .......... .......... 10% 3.34M 0s
00:46:30 100K .......... .......... .......... .......... .......... 15% 11.3M 0s
00:46:30 150K .......... .......... .......... .......... .......... 21% 4.37M 0s
00:46:30 200K .......... .......... .......... .......... .......... 26% 9.00M 0s
00:46:30 250K .......... .......... .......... .......... .......... 31% 25.9M 0s
00:46:30 300K .......... .......... .......... .......... .......... 37% 10.5M 0s
00:46:30 350K .......... .......... .......... .......... .......... 42% 14.6M 0s
00:46:30 400K .......... .......... .......... .......... .......... 47% 17.9M 0s
00:46:30 450K .......... .......... .......... .......... .......... 53% 14.3M 0s
00:46:30 500K .......... .......... .......... .......... .......... 58% 17.1M 0s
00:46:30 550K .......... .......... .......... .......... .......... 63% 16.4M 0s
00:46:30 600K .......... .......... .......... .......... .......... 69% 13.4M 0s
00:46:30 650K .......... .......... .......... .......... .......... 74% 15.2M 0s
00:46:30 700K .......... .......... .......... .......... .......... 79% 14.9M 0s
00:46:30 750K .......... .......... .......... .......... .......... 85% 16.1M 0s
00:46:30 800K .......... .......... .......... .......... .......... 90% 15.8M 0s
00:46:30 850K .......... .......... .......... .......... .......... 95% 14.0M 0s
00:46:30 900K .......... .......... .......... ......... 100% 23.4M=0.08s
00:46:30
00:46:30 2026-04-11 00:46:30 (11.2 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/regions-2.34.6.jar’ saved [962220/962220]
00:46:30
00:46:30 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/identity-spi/2.34.6/identity-spi-2.34.6.jar
00:46:30 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:30 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:30 --2026-04-11 00:46:30-- https://repo1.maven.org/maven2/software/amazon/awssdk/identity-spi/2.34.6/identity-spi-2.34.6.jar
00:46:30 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:46:30 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:46:30 HTTP request sent, awaiting response... 200 OK
00:46:30 Length: 30963 (30K) [application/java-archive]
00:46:30 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/identity-spi-2.34.6.jar’
00:46:30
00:46:30 0K .......... .......... .......... 100% 16.6M=0.002s
00:46:30
00:46:30 2026-04-11 00:46:30 (16.6 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/identity-spi-2.34.6.jar’ saved [30963/30963]
00:46:30
00:46:30 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/utils/2.34.6/utils-2.34.6.jar
00:46:30 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:30 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:30 --2026-04-11 00:46:30-- https://repo1.maven.org/maven2/software/amazon/awssdk/utils/2.34.6/utils-2.34.6.jar
00:46:31 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:46:31 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:46:31 HTTP request sent, awaiting response... 200 OK
00:46:31 Length: 241618 (236K) [application/java-archive]
00:46:31 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/utils-2.34.6.jar’
00:46:31
00:46:31 0K .......... .......... .......... .......... .......... 21% 14.2M 0s
00:46:31 50K .......... .......... .......... .......... .......... 42% 3.17M 0s
00:46:31 100K .......... .......... .......... .......... .......... 63% 12.3M 0s
00:46:31 150K .......... .......... .......... .......... .......... 84% 4.10M 0s
00:46:31 200K .......... .......... .......... ..... 100% 18.2M=0.04s
00:46:31
00:46:31 2026-04-11 00:46:31 (6.29 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/utils-2.34.6.jar’ saved [241618/241618]
00:46:31
00:46:31 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/http-client-spi/2.34.6/http-client-spi-2.34.6.jar
00:46:31 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:31 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:31 --2026-04-11 00:46:31-- https://repo1.maven.org/maven2/software/amazon/awssdk/http-client-spi/2.34.6/http-client-spi-2.34.6.jar
00:46:31 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:46:31 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:46:31 HTTP request sent, awaiting response... 200 OK
00:46:31 Length: 91685 (90K) [application/java-archive]
00:46:31 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/http-client-spi-2.34.6.jar’
00:46:31
00:46:31 0K .......... .......... .......... .......... .......... 55% 17.1M 0s
00:46:31 50K .......... .......... .......... ......... 100% 2.67M=0.02s
00:46:31
00:46:31 2026-04-11 00:46:31 (5.05 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/http-client-spi-2.34.6.jar’ saved [91685/91685]
00:46:31
00:46:31 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/retries/2.34.6/retries-2.34.6.jar
00:46:31 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:31 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:31 --2026-04-11 00:46:31-- https://repo1.maven.org/maven2/software/amazon/awssdk/retries/2.34.6/retries-2.34.6.jar
00:46:31 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:46:31 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:46:31 HTTP request sent, awaiting response... 200 OK
00:46:31 Length: 66309 (65K) [application/java-archive]
00:46:31 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/retries-2.34.6.jar’
00:46:31
00:46:31 0K .......... .......... .......... .......... .......... 77% 17.1M 0s
00:46:31 50K .......... .... 100% 9.21M=0.004s
00:46:31
00:46:31 2026-04-11 00:46:31 (14.3 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/retries-2.34.6.jar’ saved [66309/66309]
00:46:31
00:46:31 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/url-connection-client/2.34.6/url-connection-client-2.34.6.jar
00:46:31 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:31 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:31 --2026-04-11 00:46:31-- https://repo1.maven.org/maven2/software/amazon/awssdk/url-connection-client/2.34.6/url-connection-client-2.34.6.jar
00:46:32 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:46:32 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:46:32 HTTP request sent, awaiting response... 200 OK
00:46:32 Length: 33040 (32K) [application/java-archive]
00:46:32 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/url-connection-client-2.34.6.jar’
00:46:32
00:46:32 0K .......... .......... .......... .. 100% 18.8M=0.002s
00:46:32
00:46:32 2026-04-11 00:46:32 (18.8 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/url-connection-client-2.34.6.jar’ saved [33040/33040]
00:46:32
00:46:32 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/apache-client/2.34.6/apache-client-2.34.6.jar
00:46:32 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:32 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:32 --2026-04-11 00:46:32-- https://repo1.maven.org/maven2/software/amazon/awssdk/apache-client/2.34.6/apache-client-2.34.6.jar
00:46:32 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:46:32 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:46:32 HTTP request sent, awaiting response... 200 OK
00:46:32 Length: 77013 (75K) [application/java-archive]
00:46:32 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/apache-client-2.34.6.jar’
00:46:32
00:46:32 0K .......... .......... .......... .......... .......... 66% 15.5M 0s
00:46:32 50K .......... .......... ..... 100% 1.81M=0.02s
00:46:32
00:46:32 2026-04-11 00:46:32 (4.38 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/apache-client-2.34.6.jar’ saved [77013/77013]
00:46:32
00:46:32 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/arns/2.34.6/arns-2.34.6.jar
00:46:32 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:32 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:32 --2026-04-11 00:46:32-- https://repo1.maven.org/maven2/software/amazon/awssdk/arns/2.34.6/arns-2.34.6.jar
00:46:32 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:46:32 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:46:32 HTTP request sent, awaiting response... 200 OK
00:46:32 Length: 16323 (16K) [application/java-archive]
00:46:32 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/arns-2.34.6.jar’
00:46:32
00:46:32 0K .......... ..... 100% 26.1M=0.001s
00:46:32
00:46:32 2026-04-11 00:46:32 (26.1 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/arns-2.34.6.jar’ saved [16323/16323]
00:46:32
00:46:32 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/aws-query-protocol/2.34.6/aws-query-protocol-2.34.6.jar
00:46:32 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:32 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:32 --2026-04-11 00:46:32-- https://repo1.maven.org/maven2/software/amazon/awssdk/aws-query-protocol/2.34.6/aws-query-protocol-2.34.6.jar
00:46:32 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:46:32 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:46:32 HTTP request sent, awaiting response... 200 OK
00:46:32 Length: 69370 (68K) [application/java-archive]
00:46:32 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-query-protocol-2.34.6.jar’
00:46:32
00:46:32 0K .......... .......... .......... .......... .......... 73% 15.6M 0s
00:46:32 50K .......... ....... 100% 10.3M=0.005s
00:46:32
00:46:32 2026-04-11 00:46:32 (13.8 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-query-protocol-2.34.6.jar’ saved [69370/69370]
00:46:32
00:46:33 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/aws-xml-protocol/2.34.6/aws-xml-protocol-2.34.6.jar
00:46:33 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:33 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:33 --2026-04-11 00:46:33-- https://repo1.maven.org/maven2/software/amazon/awssdk/aws-xml-protocol/2.34.6/aws-xml-protocol-2.34.6.jar
00:46:33 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:46:33 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:46:33 HTTP request sent, awaiting response... 200 OK
00:46:33 Length: 102272 (100K) [application/java-archive]
00:46:33 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-xml-protocol-2.34.6.jar’
00:46:33
00:46:33 0K .......... .......... .......... .......... .......... 50% 3.66M 0s
00:46:33 50K .......... .......... .......... .......... ......... 100% 5.18M=0.02s
00:46:33
00:46:33 2026-04-11 00:46:33 (4.29 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-xml-protocol-2.34.6.jar’ saved [102272/102272]
00:46:33
00:46:33 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/checksums/2.34.6/checksums-2.34.6.jar
00:46:33 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:33 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:33 --2026-04-11 00:46:33-- https://repo1.maven.org/maven2/software/amazon/awssdk/checksums/2.34.6/checksums-2.34.6.jar
00:46:33 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:46:33 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:46:33 HTTP request sent, awaiting response... 200 OK
00:46:33 Length: 69585 (68K) [application/java-archive]
00:46:33 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/checksums-2.34.6.jar’
00:46:33
00:46:33 0K .......... .......... .......... .......... .......... 73% 16.9M 0s
00:46:33 50K .......... ....... 100% 10.8M=0.005s
00:46:33
00:46:33 2026-04-11 00:46:33 (14.7 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/checksums-2.34.6.jar’ saved [69585/69585]
00:46:33
00:46:33 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/checksums-spi/2.34.6/checksums-spi-2.34.6.jar
00:46:33 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:33 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:33 --2026-04-11 00:46:33-- https://repo1.maven.org/maven2/software/amazon/awssdk/checksums-spi/2.34.6/checksums-spi-2.34.6.jar
00:46:34 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:46:34 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:46:34 HTTP request sent, awaiting response... 200 OK
00:46:34 Length: 8044 (7.9K) [application/java-archive]
00:46:34 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/checksums-spi-2.34.6.jar’
00:46:34
00:46:34 0K ....... 100% 18.1M=0s
00:46:34
00:46:34 2026-04-11 00:46:34 (18.1 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/checksums-spi-2.34.6.jar’ saved [8044/8044]
00:46:34
00:46:34 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/crt-core/2.34.6/crt-core-2.34.6.jar
00:46:34 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:34 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:34 --2026-04-11 00:46:34-- https://repo1.maven.org/maven2/software/amazon/awssdk/crt-core/2.34.6/crt-core-2.34.6.jar
00:46:34 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:46:34 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:46:34 HTTP request sent, awaiting response... 200 OK
00:46:34 Length: 17774 (17K) [application/java-archive]
00:46:34 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/crt-core-2.34.6.jar’
00:46:34
00:46:34 0K .......... ....... 100% 22.8M=0.001s
00:46:34
00:46:34 2026-04-11 00:46:34 (22.8 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/crt-core-2.34.6.jar’ saved [17774/17774]
00:46:34
00:46:34 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/endpoints-spi/2.34.6/endpoints-spi-2.34.6.jar
00:46:34 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:34 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:34 --2026-04-11 00:46:34-- https://repo1.maven.org/maven2/software/amazon/awssdk/endpoints-spi/2.34.6/endpoints-spi-2.34.6.jar
00:46:34 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:46:34 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:46:34 HTTP request sent, awaiting response... 200 OK
00:46:34 Length: 13168 (13K) [application/java-archive]
00:46:34 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/endpoints-spi-2.34.6.jar’
00:46:34
00:46:34 0K .......... .. 100% 23.9M=0.001s
00:46:34
00:46:34 2026-04-11 00:46:34 (23.9 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/endpoints-spi-2.34.6.jar’ saved [13168/13168]
00:46:34
00:46:34 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/http-auth/2.34.6/http-auth-2.34.6.jar
00:46:34 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:34 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:34 --2026-04-11 00:46:34-- https://repo1.maven.org/maven2/software/amazon/awssdk/http-auth/2.34.6/http-auth-2.34.6.jar
00:46:34 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:46:34 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:46:34 HTTP request sent, awaiting response... 200 OK
00:46:34 Length: 17475 (17K) [application/java-archive]
00:46:34 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/http-auth-2.34.6.jar’
00:46:34
00:46:34 0K .......... ....... 100% 28.5M=0.001s
00:46:34
00:46:34 2026-04-11 00:46:34 (28.5 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/http-auth-2.34.6.jar’ saved [17475/17475]
00:46:34
00:46:34 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/http-auth-aws/2.34.6/http-auth-aws-2.34.6.jar
00:46:34 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:34 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:34 --2026-04-11 00:46:34-- https://repo1.maven.org/maven2/software/amazon/awssdk/http-auth-aws/2.34.6/http-auth-aws-2.34.6.jar
00:46:35 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:46:35 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:46:35 HTTP request sent, awaiting response... 200 OK
00:46:35 Length: 168314 (164K) [application/java-archive]
00:46:35 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/http-auth-aws-2.34.6.jar’
00:46:35
00:46:35 0K .......... .......... .......... .......... .......... 30% 14.8M 0s
00:46:35 50K .......... .......... .......... .......... .......... 60% 3.18M 0s
00:46:35 100K .......... .......... .......... .......... .......... 91% 3.63M 0s
00:46:35 150K .......... .... 100% 37.5M=0.03s
00:46:35
00:46:35 2026-04-11 00:46:35 (4.95 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/http-auth-aws-2.34.6.jar’ saved [168314/168314]
00:46:35
00:46:35 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/http-auth-aws-eventstream/2.34.6/http-auth-aws-eventstream-2.34.6.jar
00:46:35 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:35 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:35 --2026-04-11 00:46:35-- https://repo1.maven.org/maven2/software/amazon/awssdk/http-auth-aws-eventstream/2.34.6/http-auth-aws-eventstream-2.34.6.jar
00:46:35 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:46:35 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:46:35 HTTP request sent, awaiting response... 200 OK
00:46:35 Length: 8705 (8.5K) [application/java-archive]
00:46:35 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/http-auth-aws-eventstream-2.34.6.jar’
00:46:35
00:46:35 0K ........ 100% 62.5M=0s
00:46:35
00:46:35 2026-04-11 00:46:35 (62.5 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/http-auth-aws-eventstream-2.34.6.jar’ saved [8705/8705]
00:46:35
00:46:35 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/http-auth-spi/2.34.6/http-auth-spi-2.34.6.jar
00:46:35 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:35 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:35 --2026-04-11 00:46:35-- https://repo1.maven.org/maven2/software/amazon/awssdk/http-auth-spi/2.34.6/http-auth-spi-2.34.6.jar
00:46:35 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:46:35 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:46:35 HTTP request sent, awaiting response... 200 OK
00:46:35 Length: 45762 (45K) [application/java-archive]
00:46:35 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/http-auth-spi-2.34.6.jar’
00:46:35
00:46:35 0K .......... .......... .......... .......... .... 100% 15.9M=0.003s
00:46:35
00:46:35 2026-04-11 00:46:35 (15.9 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/http-auth-spi-2.34.6.jar’ saved [45762/45762]
00:46:35
00:46:35 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/json-utils/2.34.6/json-utils-2.34.6.jar
00:46:35 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:35 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:35 --2026-04-11 00:46:35-- https://repo1.maven.org/maven2/software/amazon/awssdk/json-utils/2.34.6/json-utils-2.34.6.jar
00:46:35 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:46:35 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:46:36 HTTP request sent, awaiting response... 200 OK
00:46:36 Length: 33225 (32K) [application/java-archive]
00:46:36 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/json-utils-2.34.6.jar’
00:46:36
00:46:36 0K .......... .......... .......... .. 100% 14.9M=0.002s
00:46:36
00:46:36 2026-04-11 00:46:36 (14.9 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/json-utils-2.34.6.jar’ saved [33225/33225]
00:46:36
00:46:36 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/metrics-spi/2.34.6/metrics-spi-2.34.6.jar
00:46:36 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:36 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:36 --2026-04-11 00:46:36-- https://repo1.maven.org/maven2/software/amazon/awssdk/metrics-spi/2.34.6/metrics-spi-2.34.6.jar
00:46:36 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:46:36 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:46:36 HTTP request sent, awaiting response... 200 OK
00:46:36 Length: 27262 (27K) [application/java-archive]
00:46:36 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/metrics-spi-2.34.6.jar’
00:46:36
00:46:36 0K .......... .......... ...... 100% 17.7M=0.001s
00:46:36
00:46:36 2026-04-11 00:46:36 (17.7 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/metrics-spi-2.34.6.jar’ saved [27262/27262]
00:46:36
00:46:36 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/netty-nio-client/2.34.6/netty-nio-client-2.34.6.jar
00:46:36 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:36 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:36 --2026-04-11 00:46:36-- https://repo1.maven.org/maven2/software/amazon/awssdk/netty-nio-client/2.34.6/netty-nio-client-2.34.6.jar
00:46:36 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:46:36 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:46:36 HTTP request sent, awaiting response... 200 OK
00:46:36 Length: 292688 (286K) [application/java-archive]
00:46:36 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/netty-nio-client-2.34.6.jar’
00:46:36
00:46:36 0K .......... .......... .......... .......... .......... 17% 3.74M 0s
00:46:36 50K .......... .......... .......... .......... .......... 34% 5.29M 0s
00:46:36 100K .......... .......... .......... .......... .......... 52% 4.80M 0s
00:46:36 150K .......... .......... .......... .......... .......... 69% 15.1M 0s
00:46:36 200K .......... .......... .......... .......... .......... 87% 21.7M 0s
00:46:36 250K .......... .......... .......... ..... 100% 7.46M=0.04s
00:46:36
00:46:36 2026-04-11 00:46:36 (6.55 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/netty-nio-client-2.34.6.jar’ saved [292688/292688]
00:46:36
00:46:36 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/profiles/2.34.6/profiles-2.34.6.jar
00:46:36 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:36 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:36 --2026-04-11 00:46:36-- https://repo1.maven.org/maven2/software/amazon/awssdk/profiles/2.34.6/profiles-2.34.6.jar
00:46:37 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:46:37 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:46:37 HTTP request sent, awaiting response... 200 OK
00:46:37 Length: 50524 (49K) [application/java-archive]
00:46:37 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/profiles-2.34.6.jar’
00:46:37
00:46:37 0K .......... .......... .......... .......... ......... 100% 16.4M=0.003s
00:46:37
00:46:37 2026-04-11 00:46:37 (16.4 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/profiles-2.34.6.jar’ saved [50524/50524]
00:46:37
00:46:37 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/protocol-core/2.34.6/protocol-core-2.34.6.jar
00:46:37 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:37 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:37 --2026-04-11 00:46:37-- https://repo1.maven.org/maven2/software/amazon/awssdk/protocol-core/2.34.6/protocol-core-2.34.6.jar
00:46:37 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:46:37 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:46:37 HTTP request sent, awaiting response... 200 OK
00:46:37 Length: 44371 (43K) [application/java-archive]
00:46:37 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/protocol-core-2.34.6.jar’
00:46:37
00:46:37 0K .......... .......... .......... .......... ... 100% 13.7M=0.003s
00:46:37
00:46:37 2026-04-11 00:46:37 (13.7 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/protocol-core-2.34.6.jar’ saved [44371/44371]
00:46:37
00:46:37 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/retries-spi/2.34.6/retries-spi-2.34.6.jar
00:46:37 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:37 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:37 --2026-04-11 00:46:37-- https://repo1.maven.org/maven2/software/amazon/awssdk/retries-spi/2.34.6/retries-spi-2.34.6.jar
00:46:37 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:46:37 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:46:37 HTTP request sent, awaiting response... 200 OK
00:46:37 Length: 31487 (31K) [application/java-archive]
00:46:37 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/retries-spi-2.34.6.jar’
00:46:37
00:46:37 0K .......... .......... .......... 100% 15.4M=0.002s
00:46:37
00:46:37 2026-04-11 00:46:37 (15.4 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/retries-spi-2.34.6.jar’ saved [31487/31487]
00:46:37
00:46:37 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/third-party-jackson-core/2.34.6/third-party-jackson-core-2.34.6.jar
00:46:37 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:37 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:37 --2026-04-11 00:46:37-- https://repo1.maven.org/maven2/software/amazon/awssdk/third-party-jackson-core/2.34.6/third-party-jackson-core-2.34.6.jar
00:46:37 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:46:37 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:46:38 HTTP request sent, awaiting response... 200 OK
00:46:38 Length: 535001 (522K) [application/java-archive]
00:46:38 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/third-party-jackson-core-2.34.6.jar’
00:46:38
00:46:38 0K .......... .......... .......... .......... .......... 9% 1.27M 0s
00:46:38 50K .......... .......... .......... .......... .......... 19% 328K 1s
00:46:38 100K .......... .......... .......... .......... .......... 28% 1.14M 1s
00:46:38 150K .......... .......... .......... .......... .......... 38% 554K 1s
00:46:39 200K .......... .......... .......... .......... .......... 47% 1.09M 0s
00:46:39 250K .......... .......... .......... .......... .......... 57% 1.81M 0s
00:46:39 300K .......... .......... .......... .......... .......... 66% 1.70M 0s
00:46:39 350K .......... .......... .......... .......... .......... 76% 1.44M 0s
00:46:39 400K .......... .......... .......... .......... .......... 86% 2.11M 0s
00:46:39 450K .......... .......... .......... .......... .......... 95% 2.38M 0s
00:46:39 500K .......... .......... .. 100% 3.01M=0.5s
00:46:39
00:46:39 2026-04-11 00:46:39 (1.00 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/third-party-jackson-core-2.34.6.jar’ saved [535001/535001]
00:46:39
00:46:39 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/utils-lite/2.34.6/utils-lite-2.34.6.jar
00:46:39 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:39 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:39 --2026-04-11 00:46:39-- https://repo1.maven.org/maven2/software/amazon/awssdk/utils-lite/2.34.6/utils-lite-2.34.6.jar
00:46:39 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:46:39 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:46:39 HTTP request sent, awaiting response... 200 OK
00:46:39 Length: 8798 (8.6K) [application/java-archive]
00:46:39 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/utils-lite-2.34.6.jar’
00:46:39
00:46:39 0K ........ 100% 52.6M=0s
00:46:39
00:46:39 2026-04-11 00:46:39 (52.6 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/utils-lite-2.34.6.jar’ saved [8798/8798]
00:46:39
00:46:39 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/org/reactivestreams/reactive-streams/1.0.4/reactive-streams-1.0.4.jar
00:46:39 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:39 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:39 --2026-04-11 00:46:39-- https://repo1.maven.org/maven2/org/reactivestreams/reactive-streams/1.0.4/reactive-streams-1.0.4.jar
00:46:39 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:46:39 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:46:39 HTTP request sent, awaiting response... 200 OK
00:46:39 Length: 11640 (11K) [application/java-archive]
00:46:39 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/reactive-streams-1.0.4.jar’
00:46:39
00:46:39 0K .......... . 100% 25.6M=0s
00:46:39
00:46:39 2026-04-11 00:46:39 (25.6 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/reactive-streams-1.0.4.jar’ saved [11640/11640]
00:46:39
00:46:39 + for x in *.jar
00:46:39 + mv omero-zarr-pixel-buffer-0.6.2-SNAPSHOT.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server
00:46:39 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:46:39 ++ deactivate nondestructive
00:46:39 ++ '[' -n '' ']'
00:46:39 ++ '[' -n '' ']'
00:46:39 ++ hash -r
00:46:39 ++ '[' -n '' ']'
00:46:39 ++ unset VIRTUAL_ENV
00:46:39 ++ unset VIRTUAL_ENV_PROMPT
00:46:39 ++ '[' '!' nondestructive = nondestructive ']'
00:46:39 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:46:39 ++ export VIRTUAL_ENV
00:46:39 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:46:39 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:46:39 ++ export PATH
00:46:39 ++ '[' -n '' ']'
00:46:39 ++ '[' -z '' ']'
00:46:39 ++ _OLD_VIRTUAL_PS1=
00:46:39 ++ PS1='(.venv3) '
00:46:39 ++ export PS1
00:46:39 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:46:39 ++ export VIRTUAL_ENV_PROMPT
00:46:39 ++ hash -r
00:46:39 + pip install -U pip
00:46:40 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
00:46:40 Collecting pip
00:46:40 Using cached pip-26.0.1-py3-none-any.whl (1.8 MB)
00:46:40 Installing collected packages: pip
00:46:40 Attempting uninstall: pip
00:46:40 Found existing installation: pip 22.3.1
00:46:40 Uninstalling pip-22.3.1:
00:46:40 Successfully uninstalled pip-22.3.1
00:46:41 Successfully installed pip-26.0.1
00:46:41 WARNING: There was an error checking the latest version of pip.
00:46:41 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
00:46:42 Collecting zeroc-ice==3.6.5
00:46:42 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:46:45 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 14.6 MB/s 0:00:02
00:46:45 Installing collected packages: zeroc-ice
00:46:45 Successfully installed zeroc-ice-3.6.5
00:46:46 + pip install markdown
00:46:46 Collecting markdown
00:46:46 Using cached markdown-3.10.2-py3-none-any.whl.metadata (5.1 kB)
00:46:46 Using cached markdown-3.10.2-py3-none-any.whl (108 kB)
00:46:46 Installing collected packages: markdown
00:46:46 Successfully installed markdown-3.10.2
00:46:46 + pip install reportlab
00:46:47 Collecting reportlab
00:46:47 Using cached reportlab-4.4.10-py3-none-any.whl.metadata (1.7 kB)
00:46:47 Collecting pillow>=9.0.0 (from reportlab)
00:46:47 Using cached pillow-12.2.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.8 kB)
00:46:47 Collecting charset-normalizer (from reportlab)
00:46:47 Using cached charset_normalizer-3.4.7-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (40 kB)
00:46:47 Using cached reportlab-4.4.10-py3-none-any.whl (2.0 MB)
00:46:47 Using cached pillow-12.2.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.1 MB)
00:46:47 Using cached charset_normalizer-3.4.7-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (214 kB)
00:46:47 Installing collected packages: pillow, charset-normalizer, reportlab
00:46:48
00:46:48 Successfully installed charset-normalizer-3.4.7 pillow-12.2.0 reportlab-4.4.10
00:46:48 + pip install omego
00:46:48 Collecting omego
00:46:48 Using cached omego-0.8.0-py3-none-any.whl.metadata (1.9 kB)
00:46:48 Collecting future (from omego)
00:46:48 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
00:46:49 Collecting yaclifw>=0.1.1 (from omego)
00:46:49 Using cached yaclifw-0.2.0-py3-none-any.whl
00:46:49 Collecting six (from yaclifw>=0.1.1->omego)
00:46:49 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
00:46:49 Using cached omego-0.8.0-py3-none-any.whl (41 kB)
00:46:49 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:46:49 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
00:46:49 Installing collected packages: six, future, yaclifw, omego
00:46:49
00:46:49 Successfully installed future-1.0.0 omego-0.8.0 six-1.17.0 yaclifw-0.2.0
00:46:49 + pip install tables
00:46:49 Collecting tables
00:46:49 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.1 kB)
00:46:50 Collecting numpy>=1.20.0 (from tables)
00:46:50 Using cached numpy-2.4.4-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB)
00:46:50 Collecting numexpr>=2.6.2 (from tables)
00:46:50 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
00:46:50 Collecting packaging (from tables)
00:46:50 Using cached packaging-26.0-py3-none-any.whl.metadata (3.3 kB)
00:46:50 Collecting py-cpuinfo (from tables)
00:46:50 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
00:46:50 Collecting blosc2>=2.3.0 (from tables)
00:46:50 Using cached blosc2-4.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (6.2 kB)
00:46:50 Collecting ndindex (from blosc2>=2.3.0->tables)
00:46:50 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
00:46:50 Collecting msgpack (from blosc2>=2.3.0->tables)
00:46:50 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
00:46:50 Collecting requests (from blosc2>=2.3.0->tables)
00:46:50 Using cached requests-2.33.1-py3-none-any.whl.metadata (4.8 kB)
00:46:50 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.4.7)
00:46:50 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables)
00:46:50 Using cached idna-3.11-py3-none-any.whl.metadata (8.4 kB)
00:46:50 Collecting urllib3<3,>=1.26 (from requests->blosc2>=2.3.0->tables)
00:46:50 Using cached urllib3-2.6.3-py3-none-any.whl.metadata (6.9 kB)
00:46:50 Collecting certifi>=2023.5.7 (from requests->blosc2>=2.3.0->tables)
00:46:50 Using cached certifi-2026.2.25-py3-none-any.whl.metadata (2.5 kB)
00:46:50 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (7.2 MB)
00:46:50 Using cached blosc2-4.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (5.2 MB)
00:46:50 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB)
00:46:50 Using cached numpy-2.4.4-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
00:46:50 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (426 kB)
00:46:50 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
00:46:50 Using cached packaging-26.0-py3-none-any.whl (74 kB)
00:46:50 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
00:46:50 Using cached requests-2.33.1-py3-none-any.whl (64 kB)
00:46:50 Using cached idna-3.11-py3-none-any.whl (71 kB)
00:46:50 Using cached urllib3-2.6.3-py3-none-any.whl (131 kB)
00:46:50 Using cached certifi-2026.2.25-py3-none-any.whl (153 kB)
00:46:50 Installing collected packages: py-cpuinfo, urllib3, packaging, numpy, ndindex, msgpack, idna, certifi, requests, numexpr, blosc2, tables
00:46:54
00:46:54 Successfully installed blosc2-4.1.2 certifi-2026.2.25 idna-3.11 msgpack-1.1.2 ndindex-1.10.1 numexpr-2.14.1 numpy-2.4.4 packaging-26.0 py-cpuinfo-9.0.0 requests-2.33.1 tables-3.11.1 urllib3-2.6.3
00:46:54 + pip install jinja2
00:46:54 Collecting jinja2
00:46:54 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
00:46:54 Collecting MarkupSafe>=2.0 (from jinja2)
00:46:54 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
00:46:54 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
00:46:54 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
00:46:54 Installing collected packages: MarkupSafe, jinja2
00:46:54
00:46:54 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
00:46:54 + pip install omero-py
00:46:55 Collecting omero-py
00:46:55 Using cached omero_py-5.22.1-py3-none-any.whl.metadata (6.5 kB)
00:46:55 Collecting appdirs (from omero-py)
00:46:55 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
00:46:55 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
00:46:55 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.4)
00:46:55 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.2.0)
00:46:55 Collecting PyYAML (from omero-py)
00:46:55 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
00:46:55 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
00:46:55 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.33.1)
00:46:55 Collecting portalocker (from omero-py)
00:46:55 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
00:46:55 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.7)
00:46:55 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.11)
00:46:55 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2.6.3)
00:46:55 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.2.25)
00:46:55 Using cached omero_py-5.22.1-py3-none-any.whl (2.8 MB)
00:46:55 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:46:55 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
00:46:55 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
00:46:55 Installing collected packages: appdirs, PyYAML, portalocker, omero-py
00:46:57
00:46:57 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.22.1 portalocker-3.2.0
00:46:57 + pip install pyarrow
00:46:57 Collecting pyarrow
00:46:57 Using cached pyarrow-23.0.1-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (3.1 kB)
00:46:57 Using cached pyarrow-23.0.1-cp311-cp311-manylinux_2_28_x86_64.whl (47.6 MB)
00:46:58 Installing collected packages: pyarrow
00:46:59 Successfully installed pyarrow-23.0.1
00:46:59 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
00:46:59 Collecting omero-metadata
00:46:59 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-4nbkqewn/omero-metadata_f67685d66fba43279fc349bff8533959
00:46:59 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-4nbkqewn/omero-metadata_f67685d66fba43279fc349bff8533959
00:47:03 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 32f91989d67bf35414281496d5a9035eabb7df06
00:47:03 Installing build dependencies: started
00:47:04 Installing build dependencies: finished with status 'done'
00:47:04 Getting requirements to build wheel: started
00:47:04 Getting requirements to build wheel: finished with status 'done'
00:47:04 Preparing metadata (pyproject.toml): started
00:47:05 Preparing metadata (pyproject.toml): finished with status 'done'
00:47:05 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.22.1)
00:47:05 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.3)
00:47:05 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6)
00:47:05 Collecting pandas (from omero-metadata)
00:47:05 Using cached pandas-3.0.2-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (79 kB)
00:47:05 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
00:47:05 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
00:47:05 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.4.4)
00:47:05 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.2.0)
00:47:05 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
00:47:05 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.33.1)
00:47:05 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0)
00:47:05 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.3)
00:47:05 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
00:47:05 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
00:47:05 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
00:47:05 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.7)
00:47:05 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.11)
00:47:05 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.6.3)
00:47:05 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.2.25)
00:47:05 Using cached pandas-3.0.2-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (11.3 MB)
00:47:05 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
00:47:05 Building wheels for collected packages: omero-metadata
00:47:05 Building wheel for omero-metadata (pyproject.toml): started
00:47:05 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
00:47:05 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39373 sha256=67090c116643f905310a1c7875cfaeb598081f5daa1915e1ef2e958a7c50129f
00:47:05 Stored in directory: /tmp/pip-ephem-wheel-cache-2sy4fn7i/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
00:47:05 Successfully built omero-metadata
00:47:05 Installing collected packages: python-dateutil, pandas, omero-metadata
00:47:10
00:47:10 Successfully installed omero-metadata-0.13.1.dev0 pandas-3.0.2 python-dateutil-2.9.0.post0
00:47:10 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
00:47:10 Collecting omero-cli-render
00:47:10 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-k2xt5lt3/omero-cli-render_fea69795a65743d9a09413b3b3a64486
00:47:10 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-k2xt5lt3/omero-cli-render_fea69795a65743d9a09413b3b3a64486
00:47:11 Running command git checkout -b merge_ci --track origin/merge_ci
00:47:11 Switched to a new branch 'merge_ci'
00:47:11 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:47:11 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit b8e3034b547e5e64d84284bc938930d6b3edc1b1
00:47:11 Installing build dependencies: started
00:47:12 Installing build dependencies: finished with status 'done'
00:47:12 Getting requirements to build wheel: started
00:47:12 Getting requirements to build wheel: finished with status 'done'
00:47:12 Preparing metadata (pyproject.toml): started
00:47:13 Preparing metadata (pyproject.toml): finished with status 'done'
00:47:13 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3)
00:47:13 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.22.1)
00:47:13 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
00:47:13 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
00:47:13 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.4)
00:47:13 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.2.0)
00:47:13 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
00:47:13 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.33.1)
00:47:13 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0)
00:47:13 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.7)
00:47:13 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.11)
00:47:13 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.6.3)
00:47:13 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.2.25)
00:47:13 Building wheels for collected packages: omero-cli-render
00:47:13 Building wheel for omero-cli-render (pyproject.toml): started
00:47:13 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
00:47:13 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19839 sha256=d8515b06193d1a77e9ff64dd24a8b4e80a163413119ff2887909954fc87cf9b2
00:47:13 Stored in directory: /tmp/pip-ephem-wheel-cache-e58ab9f3/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
00:47:13 Successfully built omero-cli-render
00:47:13 Installing collected packages: omero-cli-render
00:47:13 Successfully installed omero-cli-render-0.8.2.dev0
00:47:13 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
00:47:13 Collecting omero-cli-duplicate
00:47:13 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-d_50x8s4/omero-cli-duplicate_caafbbc2b1c141b0830de841727ab824
00:47:13 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-d_50x8s4/omero-cli-duplicate_caafbbc2b1c141b0830de841727ab824
00:47:14 Running command git checkout -b merge_ci --track origin/merge_ci
00:47:14 Switched to a new branch 'merge_ci'
00:47:14 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:47:14 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit f30aebc666494966330b1cf7f44f1f1be39b5c5d
00:47:14 Installing build dependencies: started
00:47:15 Installing build dependencies: finished with status 'done'
00:47:15 Getting requirements to build wheel: started
00:47:15 Getting requirements to build wheel: finished with status 'done'
00:47:15 Preparing metadata (pyproject.toml): started
00:47:16 Preparing metadata (pyproject.toml): finished with status 'done'
00:47:16 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.22.1)
00:47:16 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
00:47:16 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
00:47:16 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.4)
00:47:16 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.2.0)
00:47:16 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3)
00:47:16 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
00:47:16 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.33.1)
00:47:16 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0)
00:47:16 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.7)
00:47:16 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.11)
00:47:16 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.6.3)
00:47:16 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.2.25)
00:47:16 Building wheels for collected packages: omero-cli-duplicate
00:47:16 Building wheel for omero-cli-duplicate (pyproject.toml): started
00:47:16 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
00:47:16 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11539 sha256=ac59ace2e6d5097896b8d632babb5fb85906f7bed0aec5b8c7a8cadf868392fb
00:47:16 Stored in directory: /tmp/pip-ephem-wheel-cache-gmskidaq/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
00:47:16 Successfully built omero-cli-duplicate
00:47:16 Installing collected packages: omero-cli-duplicate
00:47:16 Successfully installed omero-cli-duplicate-0.4.1.dev0
00:47:16 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr
00:47:16 Collecting omero-cli-zarr
00:47:16 Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-a_2p00ic/omero-cli-zarr_fe15f210c13647adb9f4e9e9a6b004f3
00:47:16 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-a_2p00ic/omero-cli-zarr_fe15f210c13647adb9f4e9e9a6b004f3
00:47:17 Running command git checkout -b merge_ci --track origin/merge_ci
00:47:17 Switched to a new branch 'merge_ci'
00:47:17 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:47:17 Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit 44babe8207e116fbfa9b2596199f6016e2b5609e
00:47:17 Installing build dependencies: started
00:47:18 Installing build dependencies: finished with status 'done'
00:47:18 Getting requirements to build wheel: started
00:47:18 Getting requirements to build wheel: finished with status 'done'
00:47:18 Installing backend dependencies: started
00:47:21 Installing backend dependencies: finished with status 'done'
00:47:21 Preparing metadata (pyproject.toml): started
00:47:21 Preparing metadata (pyproject.toml): finished with status 'done'
00:47:21 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.22.1)
00:47:22 Collecting ome-zarr>=0.13.0 (from omero-cli-zarr)
00:47:22 Using cached ome_zarr-0.15.0-py3-none-any.whl.metadata (2.9 kB)
00:47:22 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.4.4)
00:47:22 Collecting dask<=2026.1.1,>=2025.12.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
00:47:22 Using cached dask-2026.1.1-py3-none-any.whl.metadata (3.8 kB)
00:47:22 Collecting zarr>=3.0.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
00:47:22 Using cached zarr-3.1.6-py3-none-any.whl.metadata (8.6 kB)
00:47:22 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:22 Using cached fsspec-2026.3.0-py3-none-any.whl.metadata (10 kB)
00:47:22 Collecting aiohttp (from ome-zarr>=0.13.0->omero-cli-zarr)
00:47:22 Using cached aiohttp-3.13.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
00:47:22 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.33.1)
00:47:22 Collecting scikit-image>=0.19.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
00:47:22 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB)
00:47:23 Collecting toolz (from ome-zarr>=0.13.0->omero-cli-zarr)
00:47:23 Using cached toolz-1.1.0-py3-none-any.whl.metadata (5.1 kB)
00:47:23 Collecting rangehttpserver (from ome-zarr>=0.13.0->omero-cli-zarr)
00:47:23 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl.metadata (769 bytes)
00:47:23 Collecting Deprecated (from ome-zarr>=0.13.0->omero-cli-zarr)
00:47:23 Using cached deprecated-1.3.1-py2.py3-none-any.whl.metadata (5.9 kB)
00:47:23 Collecting click>=8.1 (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:23 Using cached click-8.3.2-py3-none-any.whl.metadata (2.6 kB)
00:47:23 Collecting cloudpickle>=3.0.0 (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:23 Using cached cloudpickle-3.1.2-py3-none-any.whl.metadata (7.1 kB)
00:47:23 Requirement already satisfied: packaging>=20.0 in ./.venv3/lib64/python3.11/site-packages (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr) (26.0)
00:47:23 Collecting partd>=1.4.0 (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:23 Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB)
00:47:23 Requirement already satisfied: pyyaml>=5.3.1 in ./.venv3/lib64/python3.11/site-packages (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr) (6.0.3)
00:47:23 Collecting importlib_metadata>=4.13.0 (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:23 Using cached importlib_metadata-9.0.0-py3-none-any.whl.metadata (4.5 kB)
00:47:23 Collecting s3fs>2024.2.0 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:23 Using cached s3fs-2026.3.0-py3-none-any.whl.metadata (1.2 kB)
00:47:23 Collecting zipp>=3.20 (from importlib_metadata>=4.13.0->dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:23 Using cached zipp-3.23.0-py3-none-any.whl.metadata (3.6 kB)
00:47:23 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.4.4)
00:47:23 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.0.0)
00:47:23 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (12.2.0)
00:47:23 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.6.5)
00:47:23 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.2.0)
00:47:23 Collecting locket (from partd>=1.4.0->dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:23 Using cached locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB)
00:47:23 Collecting aiobotocore<4.0.0,>=2.19.0 (from s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:23 Using cached aiobotocore-3.4.0-py3-none-any.whl.metadata (27 kB)
00:47:23 Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:23 Using cached aioitertools-0.13.0-py3-none-any.whl.metadata (3.3 kB)
00:47:23 Collecting botocore<1.42.85,>=1.42.79 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:23 Using cached botocore-1.42.84-py3-none-any.whl.metadata (5.9 kB)
00:47:23 Requirement already satisfied: python-dateutil<3.0.0,>=2.1 in ./.venv3/lib64/python3.11/site-packages (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (2.9.0.post0)
00:47:23 Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:23 Using cached jmespath-1.1.0-py3-none-any.whl.metadata (7.6 kB)
00:47:24 Collecting multidict<7.0.0,>=6.0.0 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:24 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (5.3 kB)
00:47:24 Collecting wrapt<3.0.0,>=1.10.10 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:24 Using cached wrapt-2.1.2-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (7.4 kB)
00:47:24 Collecting aiohappyeyeballs>=2.5.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:24 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl.metadata (5.9 kB)
00:47:24 Collecting aiosignal>=1.4.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:24 Using cached aiosignal-1.4.0-py3-none-any.whl.metadata (3.7 kB)
00:47:24 Collecting attrs>=17.3.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:24 Using cached attrs-26.1.0-py3-none-any.whl.metadata (8.8 kB)
00:47:24 Collecting frozenlist>=1.1.1 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:24 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (20 kB)
00:47:24 Collecting propcache>=0.2.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:24 Using cached propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (13 kB)
00:47:24 Collecting yarl<2.0,>=1.17.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:24 Using cached yarl-1.23.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (79 kB)
00:47:24 Requirement already satisfied: urllib3!=2.2.0,<3,>=1.25.4 in ./.venv3/lib64/python3.11/site-packages (from botocore<1.42.85,>=1.42.79->aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (2.6.3)
00:47:24 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil<3.0.0,>=2.1->aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (1.17.0)
00:47:24 Requirement already satisfied: idna>=2.0 in ./.venv3/lib64/python3.11/site-packages (from yarl<2.0,>=1.17.0->aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) (3.11)
00:47:25 Collecting typing-extensions>=4.2 (from aiosignal>=1.4.0->aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:25 Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB)
00:47:25 Collecting scipy>=1.11.4 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:25 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (62 kB)
00:47:25 Collecting networkx>=3.0 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:25 Using cached networkx-3.6.1-py3-none-any.whl.metadata (6.8 kB)
00:47:25 Collecting imageio!=2.35.0,>=2.33 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:25 Using cached imageio-2.37.3-py3-none-any.whl.metadata (9.7 kB)
00:47:25 Collecting tifffile>=2022.8.12 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:25 Using cached tifffile-2026.3.3-py3-none-any.whl.metadata (31 kB)
00:47:25 Collecting lazy-loader>=0.4 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:25 Using cached lazy_loader-0.5-py3-none-any.whl.metadata (5.9 kB)
00:47:25 Collecting donfig>=0.8 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:25 Using cached donfig-0.8.1.post1-py3-none-any.whl.metadata (5.0 kB)
00:47:25 Collecting google-crc32c>=1.5 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:25 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl.metadata (1.7 kB)
00:47:25 Collecting numcodecs>=0.14 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:47:25 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (3.4 kB)
00:47:25 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (3.4.7)
00:47:25 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (2026.2.25)
00:47:25 Using cached ome_zarr-0.15.0-py3-none-any.whl (45 kB)
00:47:25 Using cached dask-2026.1.1-py3-none-any.whl (1.5 MB)
00:47:25 Using cached click-8.3.2-py3-none-any.whl (108 kB)
00:47:25 Using cached cloudpickle-3.1.2-py3-none-any.whl (22 kB)
00:47:25 Using cached fsspec-2026.3.0-py3-none-any.whl (202 kB)
00:47:25 Using cached importlib_metadata-9.0.0-py3-none-any.whl (27 kB)
00:47:25 Using cached partd-1.4.2-py3-none-any.whl (18 kB)
00:47:25 Using cached s3fs-2026.3.0-py3-none-any.whl (32 kB)
00:47:25 Using cached aiobotocore-3.4.0-py3-none-any.whl (88 kB)
00:47:25 Using cached aiohttp-3.13.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.8 MB)
00:47:25 Using cached aioitertools-0.13.0-py3-none-any.whl (24 kB)
00:47:25 Using cached botocore-1.42.84-py3-none-any.whl (14.8 MB)
00:47:25 Using cached jmespath-1.1.0-py3-none-any.whl (20 kB)
00:47:25 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (246 kB)
00:47:25 Using cached wrapt-2.1.2-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (114 kB)
00:47:25 Using cached yarl-1.23.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (102 kB)
00:47:25 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl (15 kB)
00:47:25 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB)
00:47:25 Using cached attrs-26.1.0-py3-none-any.whl (67 kB)
00:47:25 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB)
00:47:25 Using cached propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (210 kB)
00:47:25 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB)
00:47:25 Using cached imageio-2.37.3-py3-none-any.whl (317 kB)
00:47:25 Using cached lazy_loader-0.5-py3-none-any.whl (8.0 kB)
00:47:25 Using cached networkx-3.6.1-py3-none-any.whl (2.1 MB)
00:47:25 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.3 MB)
00:47:25 Using cached tifffile-2026.3.3-py3-none-any.whl (243 kB)
00:47:25 Using cached toolz-1.1.0-py3-none-any.whl (58 kB)
00:47:25 Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB)
00:47:25 Using cached zarr-3.1.6-py3-none-any.whl (295 kB)
00:47:25 Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB)
00:47:25 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl (33 kB)
00:47:25 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (9.1 MB)
00:47:25 Using cached zipp-3.23.0-py3-none-any.whl (10 kB)
00:47:25 Using cached deprecated-1.3.1-py2.py3-none-any.whl (11 kB)
00:47:25 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB)
00:47:25 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl (7.8 kB)
00:47:25 Building wheels for collected packages: omero-cli-zarr
00:47:25 Building wheel for omero-cli-zarr (pyproject.toml): started
00:47:26 Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done'
00:47:26 Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev162+g44babe8-py3-none-any.whl size=38288 sha256=738f6e5682a6e6bdf424b8bc9e226cc7e36abcae9f695946de4b2b0c626ac105
00:47:26 Stored in directory: /tmp/pip-ephem-wheel-cache-qz6__d47/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529
00:47:26 Successfully built omero-cli-zarr
00:47:26 Installing collected packages: rangehttpserver, zipp, wrapt, typing-extensions, toolz, tifffile, scipy, propcache, networkx, multidict, locket, lazy-loader, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, yarl, scikit-image, partd, numcodecs, importlib_metadata, Deprecated, botocore, aiosignal, zarr, dask, aiohttp, aiobotocore, s3fs, ome-zarr, omero-cli-zarr
00:47:36
00:47:36 Successfully installed Deprecated-1.3.1 aiobotocore-3.4.0 aiohappyeyeballs-2.6.1 aiohttp-3.13.5 aioitertools-0.13.0 aiosignal-1.4.0 attrs-26.1.0 botocore-1.42.84 click-8.3.2 cloudpickle-3.1.2 dask-2026.1.1 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.3.0 google-crc32c-1.8.0 imageio-2.37.3 importlib_metadata-9.0.0 jmespath-1.1.0 lazy-loader-0.5 locket-1.0.0 multidict-6.7.1 networkx-3.6.1 numcodecs-0.16.5 ome-zarr-0.15.0 omero-cli-zarr-0.5.5.dev162+g44babe8 partd-1.4.2 propcache-0.4.1 rangehttpserver-1.4.0 s3fs-2026.3.0 scikit-image-0.26.0 scipy-1.17.1 tifffile-2026.3.3 toolz-1.1.0 typing-extensions-4.15.0 wrapt-2.1.2 yarl-1.23.0 zarr-3.1.6 zipp-3.23.0
00:47:36 + pip install omero-certificates
00:47:37 Collecting omero-certificates
00:47:37 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
00:47:37 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.22.1)
00:47:37 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
00:47:37 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
00:47:37 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.4)
00:47:37 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.2.0)
00:47:37 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3)
00:47:37 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
00:47:37 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.33.1)
00:47:37 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0)
00:47:37 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.7)
00:47:37 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.11)
00:47:37 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.6.3)
00:47:37 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.2.25)
00:47:37 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
00:47:37 Installing collected packages: omero-certificates
00:47:37 Successfully installed omero-certificates-0.4.0
00:47:37 + for x in *.tar.gz
00:47:37 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
00:47:37 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
00:47:37 Installing build dependencies: started
00:47:40 Installing build dependencies: finished with status 'done'
00:47:40 Getting requirements to build wheel: started
00:47:40 Getting requirements to build wheel: finished with status 'done'
00:47:40 Preparing metadata (pyproject.toml): started
00:47:40 Preparing metadata (pyproject.toml): finished with status 'done'
00:47:40 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.22.1)
00:47:40 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
00:47:40 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
00:47:40 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.4)
00:47:40 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.2.0)
00:47:40 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3)
00:47:40 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
00:47:40 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.33.1)
00:47:40 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0)
00:47:40 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.7)
00:47:40 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.11)
00:47:40 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.6.3)
00:47:40 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.2.25)
00:47:40 Building wheels for collected packages: omero-dropbox
00:47:40 Building wheel for omero-dropbox (pyproject.toml): started
00:47:41 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
00:47:41 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49154 sha256=4172787535b7235c77f37372798b793a67af6796ec58d68865dd00a02d212975
00:47:41 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
00:47:41 Successfully built omero-dropbox
00:47:41 Installing collected packages: omero-dropbox
00:47:41 Successfully installed omero-dropbox-5.7.1.dev0
00:47:41 + for x in *.tar.gz
00:47:41 + pip install -U omero_marshal-0.9.2.dev0.tar.gz
00:47:41 Processing ./omero_marshal-0.9.2.dev0.tar.gz
00:47:41 Installing build dependencies: started
00:47:42 Installing build dependencies: finished with status 'done'
00:47:42 Getting requirements to build wheel: started
00:47:42 Getting requirements to build wheel: finished with status 'done'
00:47:42 Preparing metadata (pyproject.toml): started
00:47:42 Preparing metadata (pyproject.toml): finished with status 'done'
00:47:42 Building wheels for collected packages: omero_marshal
00:47:42 Building wheel for omero_marshal (pyproject.toml): started
00:47:43 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
00:47:43 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88131 sha256=882760db56da2999d0b76c499a95b1bc8ea24de9ed740fa0c07b69d79312f97a
00:47:43 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230
00:47:43 Successfully built omero_marshal
00:47:43 Installing collected packages: omero_marshal
00:47:43 Successfully installed omero_marshal-0.9.2.dev0
00:47:43 + for x in *.tar.gz
00:47:43 + pip install -U omero_py-5.22.2.dev0.tar.gz
00:47:43 Processing ./omero_py-5.22.2.dev0.tar.gz
00:47:44 Installing build dependencies: started
00:47:44 Installing build dependencies: finished with status 'done'
00:47:44 Getting requirements to build wheel: started
00:47:45 Getting requirements to build wheel: finished with status 'done'
00:47:45 Preparing metadata (pyproject.toml): started
00:47:45 Preparing metadata (pyproject.toml): finished with status 'done'
00:47:45 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (1.4.4)
00:47:45 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (1.0.0)
00:47:45 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (2.4.4)
00:47:45 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (12.2.0)
00:47:45 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (6.0.3)
00:47:45 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (3.6.5)
00:47:45 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (2.33.1)
00:47:45 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (3.2.0)
00:47:45 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (3.4.7)
00:47:45 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (3.11)
00:47:45 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (2.6.3)
00:47:45 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (2026.2.25)
00:47:45 Building wheels for collected packages: omero-py
00:47:45 Building wheel for omero-py (pyproject.toml): started
00:47:46 Building wheel for omero-py (pyproject.toml): finished with status 'done'
00:47:46 Created wheel for omero-py: filename=omero_py-5.22.2.dev0-py3-none-any.whl size=2786692 sha256=10250996edbec7aba6f30947247dd545a1995f08defc5066b92a643eb15038e1
00:47:46 Stored in directory: /home/omero/.cache/pip/wheels/ec/3f/72/4027ca0a7faf1f66d4577cc07619b0497ac8e99396d43dd8fa
00:47:46 Successfully built omero-py
00:47:46 Installing collected packages: omero-py
00:47:46 Attempting uninstall: omero-py
00:47:46 Found existing installation: omero-py 5.22.1
00:47:46 Uninstalling omero-py-5.22.1:
00:47:47 Successfully uninstalled omero-py-5.22.1
00:47:48 Successfully installed omero-py-5.22.2.dev0
00:47:48 + for x in *.tar.gz
00:47:48 + pip install -U omero_scripts-5.10.1.dev0.tar.gz
00:47:49 Processing ./omero_scripts-5.10.1.dev0.tar.gz
00:47:49 Installing build dependencies: started
00:47:50 Installing build dependencies: finished with status 'done'
00:47:50 Getting requirements to build wheel: started
00:47:51 Getting requirements to build wheel: finished with status 'done'
00:47:51 Preparing metadata (pyproject.toml): started
00:47:51 Preparing metadata (pyproject.toml): finished with status 'done'
00:47:51 Building wheels for collected packages: omero-scripts
00:47:51 Building wheel for omero-scripts (pyproject.toml): started
00:47:51 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
00:47:51 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=137001 sha256=64254201ecd27fa3ccfab832cd48238c9bdfd7f605a715a6afd76c167e1cb6b9
00:47:51 Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e
00:47:51 Successfully built omero-scripts
00:47:51 Installing collected packages: omero-scripts
00:47:51 Successfully installed omero-scripts-5.10.1.dev0
00:47:51 + for x in *.tar.gz
00:47:51 + pip install -U omero_web-5.31.1.dev0.tar.gz
00:47:52 Processing ./omero_web-5.31.1.dev0.tar.gz
00:47:52 Installing build dependencies: started
00:47:53 Installing build dependencies: finished with status 'done'
00:47:53 Getting requirements to build wheel: started
00:47:53 Getting requirements to build wheel: finished with status 'done'
00:47:53 Preparing metadata (pyproject.toml): started
00:47:53 Preparing metadata (pyproject.toml): finished with status 'done'
00:47:53 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (5.22.2.dev0)
00:47:53 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.31.1.dev0)
00:47:53 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl.metadata (27 kB)
00:47:54 Collecting Django<5.3,>=5.2.9 (from omero-web==5.31.1.dev0)
00:47:54 Using cached django-5.2.13-py3-none-any.whl.metadata (4.1 kB)
00:47:54 Collecting django-pipeline>=4.1.0 (from omero-web==5.31.1.dev0)
00:47:54 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
00:47:54 Collecting django-cors-headers==3.7.0 (from omero-web==5.31.1.dev0)
00:47:54 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
00:47:54 Collecting whitenoise>=5.3.0 (from omero-web==5.31.1.dev0)
00:47:54 Using cached whitenoise-6.12.0-py3-none-any.whl.metadata (3.7 kB)
00:47:54 Collecting gunicorn>=19.3 (from omero-web==5.31.1.dev0)
00:47:54 Using cached gunicorn-25.3.0-py3-none-any.whl.metadata (5.5 kB)
00:47:54 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (0.9.2.dev0)
00:47:54 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (12.2.0)
00:47:54 Collecting pytz (from omero-web==5.31.1.dev0)
00:47:54 Using cached pytz-2026.1.post1-py2.py3-none-any.whl.metadata (22 kB)
00:47:54 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (3.2.0)
00:47:54 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (26.0)
00:47:54 Collecting importlib-resources (from omero-web==5.31.1.dev0)
00:47:54 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
00:47:54 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.31.1.dev0)
00:47:54 Using cached asgiref-3.11.1-py3-none-any.whl.metadata (9.3 kB)
00:47:54 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.31.1.dev0)
00:47:54 Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB)
00:47:54 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.31.1.dev0) (65.5.1)
00:47:54 Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.31.1.dev0)
00:47:54 Using cached wheel-0.46.3-py3-none-any.whl.metadata (2.4 kB)
00:47:54 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (1.4.4)
00:47:54 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (1.0.0)
00:47:54 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (2.4.4)
00:47:54 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (6.0.3)
00:47:54 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (3.6.5)
00:47:54 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (2.33.1)
00:47:54 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (3.4.7)
00:47:54 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (3.11)
00:47:54 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (2.6.3)
00:47:54 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (2026.2.25)
00:47:54 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
00:47:54 Using cached django-5.2.13-py3-none-any.whl (8.3 MB)
00:47:54 Using cached asgiref-3.11.1-py3-none-any.whl (24 kB)
00:47:54 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl (32 kB)
00:47:54 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
00:47:54 Using cached gunicorn-25.3.0-py3-none-any.whl (208 kB)
00:47:54 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB)
00:47:54 Using cached whitenoise-6.12.0-py3-none-any.whl (20 kB)
00:47:54 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
00:47:54 Using cached pytz-2026.1.post1-py2.py3-none-any.whl (510 kB)
00:47:54 Using cached wheel-0.46.3-py3-none-any.whl (30 kB)
00:47:54 Building wheels for collected packages: omero-web
00:47:54 Building wheel for omero-web (pyproject.toml): started
00:47:55 Building wheel for omero-web (pyproject.toml): finished with status 'done'
00:47:55 Created wheel for omero-web: filename=omero_web-5.31.1.dev0-py3-none-any.whl size=2819315 sha256=7b26f8682e4437e27ef89b7876dda2cbd4b31f89c9f52d6e0804941ff7fa51cf
00:47:55 Stored in directory: /home/omero/.cache/pip/wheels/48/a3/5b/968853abf49b64e1726fdb37874d77f08ddad2d06b53de06b3
00:47:55 Successfully built omero-web
00:47:55 Installing collected packages: pytz, whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
00:47:58
00:47:58 Successfully installed Django-5.2.13 asgiref-3.11.1 concurrent-log-handler-0.9.29 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-25.3.0 importlib-resources-6.5.2 omero-web-5.31.1.dev0 pytz-2026.1.post1 sqlparse-0.5.5 wheel-0.46.3 whitenoise-6.12.0
00:47:58 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
00:47:58 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:47:58 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:47:58 --2026-04-11 00:47:58-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
00:47:58 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.108.133, 185.199.109.133, 185.199.111.133, ...
00:47:58 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.108.133|:443... connected.
00:47:58 HTTP request sent, awaiting response... 200 OK
00:47:59 Length: 139338 (136K) [text/plain]
00:47:59 Saving to: ‘Figure_To_Pdf.py’
00:47:59
00:47:59 0K .......... .......... .......... .......... .......... 36% 2.69M 0s
00:47:59 50K .......... .......... .......... .......... .......... 73% 8.70M 0s
00:47:59 100K .......... .......... .......... ...... 100% 4.21M=0.03s
00:47:59
00:47:59 2026-04-11 00:47:59 (4.13 MB/s) - ‘Figure_To_Pdf.py’ saved [139338/139338]
00:47:59
00:47:59 + chmod 755 Figure_To_Pdf.py
00:47:59 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
00:47:59 + omero config set omero.db.name OMERO-server
00:48:01 + omero config set omero.db.host pg
00:48:03 + omero config set omero.db.user postgres
00:48:05 + omero config set omero.data.dir /home/omero/omero-server-data
00:48:07 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
00:48:09 + omero config set omero.db.poolsize 25
00:48:11 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
00:48:13 + omero config set omero.security.trustStorePassword changeit
00:48:15 + omero config set omero.mail.config true
00:48:16 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
00:48:19 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED'
00:48:20 + omero certificates
00:48:22 OpenSSL 3.5.1 1 Jul 2025 (Library: OpenSSL 3.5.1 1 Jul 2025)
00:48:22 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
00:48:23 + '[' false = true ']'
00:48:23 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
00:48:23 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
00:48:23 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
00:48:23 2026-04-11 00:48:23,094 [ omego.db] DEBUG dbcommand => upgrade
00:48:23 2026-04-11 00:48:23,095 [ omego.db] DEBUG dbhost => localhost
00:48:23 2026-04-11 00:48:23,095 [ omego.db] DEBUG dbname => OMERO-server
00:48:23 2026-04-11 00:48:23,095 [ omego.db] DEBUG dbpass => omero
00:48:23 2026-04-11 00:48:23,095 [ omego.db] DEBUG dbuser => omero
00:48:23 2026-04-11 00:48:23,095 [ omego.db] DEBUG rootpass => omero
00:48:23 2026-04-11 00:48:23,095 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
00:48:23 2026-04-11 00:48:23,095 [omego.extern] INFO Executing : omero version
00:48:24 OMERO.py version:
00:48:24 OMERO.server version:
00:48:24 5.6.3-594-11f9482197-ice36-b106
00:48:24 5.22.2.dev0
00:48:25 2026-04-11 00:48:25,191 [omego.extern] INFO Completed [2.096 s]
00:48:25 2026-04-11 00:48:25,191 [omego.extern] DEBUG Using omero CLI from omero
00:48:25 2026-04-11 00:48:25,191 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
00:48:25 2026-04-11 00:48:25,191 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:48:25 2026-04-11 00:48:25,191 [omego.extern] INFO Executing : omero config get --show-password
00:48:27 2026-04-11 00:48:27,253 [omego.extern] INFO Completed [2.061 s]
00:48:27 2026-04-11 00:48:27,253 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:48:27 2026-04-11 00:48:27,253 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
00:48:27 2026-04-11 00:48:27,258 [omego.extern] INFO Completed [0.005 s]
00:48:27 2026-04-11 00:48:27,258 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.11\n'
00:48:27 2026-04-11 00:48:27,259 [ omego.db] INFO psql version: psql (PostgreSQL) 16.11
00:48:27
00:48:27 2026-04-11 00:48:27,259 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:48:27 2026-04-11 00:48:27,259 [omego.extern] INFO Executing : omero config get --show-password
00:48:29 2026-04-11 00:48:29,284 [omego.extern] INFO Completed [2.026 s]
00:48:29 2026-04-11 00:48:29,284 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:48:29 2026-04-11 00:48:29,285 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
00:48:29 2026-04-11 00:48:29,294 [omego.extern] INFO Completed [0.009 s]
00:48:29 2026-04-11 00:48:29,294 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.6") at port "5432".\n'
00:48:29 2026-04-11 00:48:29,294 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:48:29 2026-04-11 00:48:29,294 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:48:29 2026-04-11 00:48:29,294 [omego.extern] INFO Executing : omero config get --show-password
00:48:31 2026-04-11 00:48:31,336 [omego.extern] INFO Completed [2.042 s]
00:48:31 2026-04-11 00:48:31,336 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:48:31 2026-04-11 00:48:31,336 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:48:31 2026-04-11 00:48:31,347 [omego.extern] INFO Completed [0.010 s]
00:48:31 2026-04-11 00:48:31,347 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
00:48:31 2026-04-11 00:48:31,347 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
00:48:31 2026-04-11 00:48:31,348 [ omego.db] INFO Database is already at OMERO5.4__0
00:48:31 + export LANG=en_US.UTF-8
00:48:31 + LANG=en_US.UTF-8
00:48:31 + export LANGUAGE=en_US:en
00:48:31 + LANGUAGE=en_US:en
00:48:31 + export LC_ALL=en_US.UTF-8
00:48:31 + LC_ALL=en_US.UTF-8
00:48:31 + BUILD_ID=DONT_KILL_ME
00:48:31 + omero admin start
00:48:36 No descriptor given. Using etc/grid/default.xml
00:48:43 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
00:48:43 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
00:48:43 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
00:48:43 Waiting on startup. Use CTRL-C to exit
00:48:43 + omero admin waitup
00:48:45 Waiting on startup. Use CTRL-C to exit
00:48:46 + omero admin diagnostics
00:48:48
00:48:48 ================================================================================
00:48:48 OMERO Diagnostics (admin)
00:48:48 ================================================================================
00:48:48
00:48:48 Commands: java -version 17.0.17 (/usr/bin/java)
00:48:48 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
00:48:48 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
00:48:48 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
00:48:48 Commands: psql --version 16.11 (/usr/bin/psql)
00:48:48 Commands: openssl version 3.5.11 (/usr/bin/openssl)
00:48:48
00:48:48 Component: OMERO.py 5.22.2.dev0
00:48:48 Component: OMERO.server 5.6.3-594-11f9482197-ice36-b106
00:48:48
00:48:48 Server: icegridnode running
00:48:48 Server: Blitz-0 active (pid = 18678, enabled)
00:48:48 Server: Indexer-0 activating (enabled)
00:48:48 Server: OMERO.Glacier2 active (pid = 18712, enabled)
00:48:48 Server: OMERO.IceStorm active (pid = 18740, enabled)
00:48:48 Server: Processor-0 active (pid = 18729, enabled)
00:48:48 Server: Tables-0 active (pid = 18741, enabled)
00:48:48
00:48:48 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
00:48:48 Log files: Blitz-0.log 33.2 KB errors=0 warnings=1
00:48:48 Log files: DropBox.log n/a
00:48:48 Log files: FileServer.log n/a
00:48:48 Log files: Indexer-0.log 358 B
00:48:48 Log files: MonitorServer.log n/a
00:48:48 Log files: Processor-0.log 735 B
00:48:48 Log files: Tables-0.log 961 B
00:48:48 Log files: TestDropBox.log n/a
00:48:48 Log files: master.err empty
00:48:48 Log files: master.out 30.5 KB
00:48:48 Log files: Total size 0.07 MB
00:48:48
00:48:48
00:48:48 Environment:OMERO_HOME=(unset)
00:48:48 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:48:48 Environment:OMERO_NODE=(unset)
00:48:48 Environment:OMERO_MASTER=(unset)
00:48:48 Environment:OMERO_USERDIR=(unset)
00:48:48 Environment:OMERO_TMPDIR=(unset)
00:48:48 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:48:48 Environment:PYTHONPATH=(unset)
00:48:48 Environment:ICE_HOME=/opt/ice-3.6.5
00:48:48 Environment:LD_LIBRARY_PATH=(unset)
00:48:48 Environment:DYLD_LIBRARY_PATH=(unset)
00:48:48
00:48:48 OMERO SSL port:4064
00:48:48 OMERO TCP port:4063
00:48:48 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
00:48:48 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
00:48:48
00:48:48 JVM settings: Blitz-${index} -Xmx7200m
00:48:48 JVM settings: Indexer-${index} -Xmx4800m
00:48:48 JVM settings: PixelData-${index} -Xmx7200m
00:48:48 JVM settings: Repository-${index} -Xmx4800m
00:48:48
00:48:48 Jar: lib/server/formats-api.jar Bio-Formats API 8.6.0-SNAPSHOT 11 April 2026 d9ce4dcde9a664eae9e040ebd2f3289068a56765
00:48:48 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.6.0-SNAPSHOT 11 April 2026 d9ce4dcde9a664eae9e040ebd2f3289068a56765
00:48:48 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.6.0-SNAPSHOT 11 April 2026 d9ce4dcde9a664eae9e040ebd2f3289068a56765
00:48:48 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.4-SNAPSHOT 11 April 2026 5363df729d3ac4be390e6952a4d954f90526c048
00:48:48 Jar: lib/server/ome-common.jar OME Common Java 6.2.2-SNAPSHOT 11 April 2026 5363df729d3ac4be390e6952a4d954f90526c048
00:48:48 Jar: lib/server/ome-jai.jar OME JAI 0.1.6-SNAPSHOT 11 April 2026 5363df729d3ac4be390e6952a4d954f90526c048
00:48:48 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.5-SNAPSHOT 11 April 2026 5363df729d3ac4be390e6952a4d954f90526c048
00:48:48 Jar: lib/server/ome-poi.jar OME POI 5.3.11-SNAPSHOT 11 April 2026 5363df729d3ac4be390e6952a4d954f90526c048
00:48:48 Jar: lib/server/ome-xml.jar OME XML library 6.5.4-SNAPSHOT 11 April 2026 5363df729d3ac4be390e6952a4d954f90526c048
00:48:48 Jar: lib/server/omero-blitz.jar jar 5.8.5-SNAPSHOT
00:48:48 Jar: lib/server/omero-common.jar jar 5.7.6-SNAPSHOT
00:48:48 Jar: lib/server/omero-gateway.jar jar 5.10.6-SNAPSHOT
00:48:48 Jar: lib/server/omero-model.jar jar 5.7.6-SNAPSHOT
00:48:48 Jar: lib/server/omero-renderer.jar jar 5.6.5-SNAPSHOT
00:48:48 Jar: lib/server/omero-romio.jar jar 5.8.6-SNAPSHOT
00:48:48 Jar: lib/server/omero-server.jar jar 5.7.5-SNAPSHOT
00:48:48 Jar: lib/server/omero-zarr-pixel-buffer-0.6.2-SNAPSHOT.jar OMERO Zarr Pixel Buffer 0.6.2-SNAPSHOT f25875b156d29ab63ae8f405ea2feca4363da278
00:48:48 + deactivate
00:48:48 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:48:48 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:48:48 + export PATH
00:48:48 + unset _OLD_VIRTUAL_PATH
00:48:48 + '[' -n '' ']'
00:48:48 + hash -r
00:48:48 + '[' -n '' ']'
00:48:48 + unset VIRTUAL_ENV
00:48:48 + unset VIRTUAL_ENV_PROMPT
00:48:48 + '[' '!' '' = nondestructive ']'
00:48:48 + unset -f deactivate
00:48:48 Finished: SUCCESS
