09:58:47 Started by user devspace
09:58:47 Running as SYSTEM
09:58:47 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
09:58:47 [OMERO-server] $ /bin/bash -xe /tmp/jenkins15570676998218722952.sh
09:58:47 + source /home/settings.env
09:58:47 ++ OMERO_DB_HOST=pg
09:58:47 ++ OMERO_DB_USER=postgres
09:58:47 ++ OMERO_DB_PASS=
09:58:47 ++ OMERO_ROOT_PASS=omero
09:58:47 ++ OMERO_DATA_DIR=/OMERO
09:58:47 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
09:58:47 + OMERO_DB_NAME=OMERO-server
09:58:47 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
09:58:47 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
09:58:47 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
09:58:47 + OMERO_DATA_DIR=/home/omero/omero-server-data
09:58:47 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
09:58:47 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
09:58:47 ++ deactivate nondestructive
09:58:47 ++ '[' -n '' ']'
09:58:47 ++ '[' -n '' ']'
09:58:47 ++ hash -r
09:58:47 ++ '[' -n '' ']'
09:58:47 ++ unset VIRTUAL_ENV
09:58:47 ++ unset VIRTUAL_ENV_PROMPT
09:58:47 ++ '[' '!' nondestructive = nondestructive ']'
09:58:47 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
09:58:47 ++ export VIRTUAL_ENV
09:58:47 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:58:47 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:58:47 ++ export PATH
09:58:47 ++ '[' -n '' ']'
09:58:47 ++ '[' -z '' ']'
09:58:47 ++ _OLD_VIRTUAL_PS1=
09:58:47 ++ PS1='(.venv3) '
09:58:47 ++ export PS1
09:58:47 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
09:58:47 ++ export VIRTUAL_ENV_PROMPT
09:58:47 ++ hash -r
09:58:47 + omero admin stop
09:58:49 Waiting on shutdown. Use CTRL-C to exit
09:58:49 .+ sleep 5
09:59:04 + deactivate
09:59:04 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
09:59:04 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:59:04 + export PATH
09:59:04 + unset _OLD_VIRTUAL_PATH
09:59:04 + '[' -n '' ']'
09:59:04 + hash -r
09:59:04 + '[' -n '' ']'
09:59:04 + unset VIRTUAL_ENV
09:59:04 + unset VIRTUAL_ENV_PROMPT
09:59:04 + '[' '!' '' = nondestructive ']'
09:59:04 + unset -f deactivate
09:59:04 + rm -rf /home/omero/workspace/OMERO-server/.venv3
09:59:05 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
09:59:08 + '[' false = true ']'
09:59:08 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
09:59:08 Skipping PURGE_DATA:CleanDbAndRepo
09:59:08 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.4-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.22.0.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.30.2.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
09:59:10 Copied 1 artifact from "OMERO-build" build number 43
09:59:10 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 39
09:59:10 Copied 2 artifacts from "OMERO-build-build" build number 43
09:59:10 Copied 1 artifact from "OMERO-zarr-pixel-buffer-build" build number 37
09:59:10 [OMERO-server] $ /bin/bash -xe /tmp/jenkins4214415709149622200.sh
09:59:10 + source /home/settings.env
09:59:10 ++ OMERO_DB_HOST=pg
09:59:10 ++ OMERO_DB_USER=postgres
09:59:10 ++ OMERO_DB_PASS=
09:59:10 ++ OMERO_ROOT_PASS=omero
09:59:10 ++ OMERO_DATA_DIR=/OMERO
09:59:10 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
09:59:10 + OMERO_DB_NAME=OMERO-server
09:59:10 + OMERO_DATA_DIR=/home/omero/omero-server-data
09:59:10 + mkdir -p /home/omero/omero-server-data
09:59:10 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
09:59:10 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
09:59:10 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
09:59:10 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
09:59:10 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
09:59:10 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
09:59:10 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
09:59:10 ++ ls OMERO.server-5.6.3-588-be163bcc16-ice36-b43.zip
09:59:10 + ZIP=OMERO.server-5.6.3-588-be163bcc16-ice36-b43.zip
09:59:10 + '[' '!' -z '' ']'
09:59:10 + DIST=OMERO.server-5.6.3-588-be163bcc16-ice36-b43
09:59:10 + unzip OMERO.server-5.6.3-588-be163bcc16-ice36-b43.zip
09:59:10 Archive: OMERO.server-5.6.3-588-be163bcc16-ice36-b43.zip
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/blitz/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/grid/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/profiles/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/templates/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/templates/error/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/templates/grid/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/scripts/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/scripts/luts/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/scripts/luts/janelia/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/scripts/luts/matplotlib/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/scripts/luts/ncsa_paledit/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/scripts/luts/seaborn/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/scripts/luts/wcif/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/scripts/omero/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/scripts/omero/analysis_scripts/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/scripts/omero/annotation_scripts/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/scripts/omero/export_scripts/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/scripts/omero/figure_scripts/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/scripts/omero/import_scripts/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/scripts/omero/util_scripts/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/server/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/share/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/share/licenses/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/misc/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO3A__1/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO3A__10/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO3A__11/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO3A__2/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO3A__3/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO3A__4/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO3A__5/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO3A__6/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO3A__7/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO3A__8/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO3A__9/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO3__4/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO3__5/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO3__6/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO3__7/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO4.1__0/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO4.2__0/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO4.2__0/t/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO4.3__0/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO4.4__0/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO4__0/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO5.0__0/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO5.1__1/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO5.2__0/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO5.3__0/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO5.4DEV__1/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO5.4DEV__2/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO5.4DEV__3/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO5.4__0/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/var/
09:59:10 creating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/var/tmp/
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/LICENSE.txt
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/backup.cfg
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/blitz/mail-senders.example
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/blitz/mail-server.example
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/build.properties
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/env.bat
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/env.sh
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/hibernate.properties
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/ice.config
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/logback-cli.xml
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/logback-indexing-cli.xml
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/logback-indexing.xml
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/logback.xml
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/mime.types
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/node1.cfg
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/node2.cfg
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/omero.properties
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/profiles/psql
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/rollover.cfg
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/templates/Windows.cfg
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/templates/error/maintainance.html
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/templates/grid/README
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/templates/grid/default.xml
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/templates/grid/templates.xml
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/templates/grid/windefault.xml
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/templates/ice.config
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/templates/internal.cfg
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/templates/master.cfg
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/templates/robot.template
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/etc/testdropbox.config
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/history.rst
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/OMEZarrReader.jar
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/accessors-smart.jar
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/activation.jar
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/aggdesigner-algorithm.jar
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/aircompressor.jar
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/antlr.jar
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/aopalliance.jar
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/apiguardian-api.jar
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/asm.jar
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/avatica-core.jar
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/avatica-metrics.jar
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/aws-java-sdk-core.jar
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/aws-java-sdk-kms.jar
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/aws-java-sdk-s3.jar
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/base.jar
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/batik-anim.jar
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/batik-awt-util.jar
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/batik-bridge.jar
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/batik-codec.jar
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/batik-constants.jar
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/batik-css.jar
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/batik-dom.jar
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/batik-ext.jar
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/batik-gvt.jar
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/batik-i18n.jar
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/batik-parser.jar
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/batik-script.jar
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/batik-shared-resources.jar
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/batik-svg-dom.jar
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/batik-svggen.jar
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/batik-transcoder.jar
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/batik-util.jar
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/batik-xml.jar
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/btm.jar
09:59:10 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/calcite-core.jar
09:59:11 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/calcite-linq4j.jar
09:59:11 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/cdm-core.jar
09:59:11 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/checker-qual.jar
09:59:11 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/commons-beanutils.jar
09:59:11 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/commons-codec.jar
09:59:11 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/lib/client/commons-collections.jar
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09:59:13 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
09:59:13 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
09:59:13 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO5.4__0/psql-footer.sql
09:59:13 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO5.4__0/psql-header.sql
09:59:13 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO5.4__0/schema.sql
09:59:13 inflating: OMERO.server-5.6.3-588-be163bcc16-ice36-b43/sql/psql/OMERO5.4__0/views.sql
09:59:13 + rm -f OMERO.server-5.6.3-588-be163bcc16-ice36-b43.zip
09:59:13 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-588-be163bcc16-ice36-b43 /home/omero/workspace/OMERO-server/OMERO.server
09:59:13 + rm -rf /home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-core.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-kms.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-annotations.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-core.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-databind.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-classic.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-core.jar
09:59:13 + awsSdkVersion=2.34.6
09:59:13 + jacksonVersion=2.20.0
09:59:13 + logbackVersion=1.3.14
09:59:13 + zarrJavaVersion=0.0.10
09:59:13 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/s3/2.34.6/s3-2.34.6.jar
09:59:13 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:59:13 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:59:13 --2026-02-04 09:59:13-- https://repo1.maven.org/maven2/software/amazon/awssdk/s3/2.34.6/s3-2.34.6.jar
09:59:13 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
09:59:13 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
09:59:13 HTTP request sent, awaiting response... 200 OK
09:59:13 Length: 4083366 (3.9M) [application/java-archive]
09:59:13 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3-2.34.6.jar’
09:59:13
09:59:13 0K .......... .......... .......... .......... .......... 1% 3.51M 1s
09:59:13 50K .......... .......... .......... .......... .......... 2% 8.51M 1s
09:59:13 100K .......... .......... .......... .......... .......... 3% 4.52M 1s
09:59:13 150K .......... .......... .......... .......... .......... 5% 10.6M 1s
09:59:13 200K .......... .......... .......... .......... .......... 6% 12.9M 1s
09:59:13 250K .......... .......... .......... .......... .......... 7% 11.4M 1s
09:59:13 300K .......... .......... .......... .......... .......... 8% 17.1M 0s
09:59:13 350K .......... .......... .......... .......... .......... 10% 25.4M 0s
09:59:13 400K .......... .......... .......... .......... .......... 11% 13.2M 0s
09:59:13 450K .......... .......... .......... .......... .......... 12% 26.1M 0s
09:59:13 500K .......... .......... .......... .......... .......... 13% 11.6M 0s
09:59:13 550K .......... .......... .......... .......... .......... 15% 25.4M 0s
09:59:13 600K .......... .......... .......... .......... .......... 16% 22.1M 0s
09:59:13 650K .......... .......... .......... .......... .......... 17% 19.1M 0s
09:59:13 700K .......... .......... .......... .......... .......... 18% 17.9M 0s
09:59:13 750K .......... .......... .......... .......... .......... 20% 18.7M 0s
09:59:13 800K .......... .......... .......... .......... .......... 21% 13.5M 0s
09:59:13 850K .......... .......... .......... .......... .......... 22% 21.5M 0s
09:59:13 900K .......... .......... .......... .......... .......... 23% 14.3M 0s
09:59:13 950K .......... .......... .......... .......... .......... 25% 27.8M 0s
09:59:13 1000K .......... .......... .......... .......... .......... 26% 19.1M 0s
09:59:13 1050K .......... .......... .......... .......... .......... 27% 13.5M 0s
09:59:13 1100K .......... .......... .......... .......... .......... 28% 20.3M 0s
09:59:13 1150K .......... .......... .......... .......... .......... 30% 15.2M 0s
09:59:13 1200K .......... .......... .......... .......... .......... 31% 22.2M 0s
09:59:13 1250K .......... .......... .......... .......... .......... 32% 22.3M 0s
09:59:13 1300K .......... .......... .......... .......... .......... 33% 13.3M 0s
09:59:13 1350K .......... .......... .......... .......... .......... 35% 20.5M 0s
09:59:13 1400K .......... .......... .......... .......... .......... 36% 15.2M 0s
09:59:13 1450K .......... .......... .......... .......... .......... 37% 21.8M 0s
09:59:13 1500K .......... .......... .......... .......... .......... 38% 22.4M 0s
09:59:13 1550K .......... .......... .......... .......... .......... 40% 13.6M 0s
09:59:13 1600K .......... .......... .......... .......... .......... 41% 18.3M 0s
09:59:13 1650K .......... .......... .......... .......... .......... 42% 12.6M 0s
09:59:13 1700K .......... .......... .......... .......... .......... 43% 19.3M 0s
09:59:13 1750K .......... .......... .......... .......... .......... 45% 21.5M 0s
09:59:13 1800K .......... .......... .......... .......... .......... 46% 17.5M 0s
09:59:13 1850K .......... .......... .......... .......... .......... 47% 25.0M 0s
09:59:13 1900K .......... .......... .......... .......... .......... 48% 13.7M 0s
09:59:13 1950K .......... .......... .......... .......... .......... 50% 15.5M 0s
09:59:13 2000K .......... .......... .......... .......... .......... 51% 16.4M 0s
09:59:13 2050K .......... .......... .......... .......... .......... 52% 15.7M 0s
09:59:13 2100K .......... .......... .......... .......... .......... 53% 40.4M 0s
09:59:13 2150K .......... .......... .......... .......... .......... 55% 15.3M 0s
09:59:13 2200K .......... .......... .......... .......... .......... 56% 15.1M 0s
09:59:13 2250K .......... .......... .......... .......... .......... 57% 23.1M 0s
09:59:13 2300K .......... .......... .......... .......... .......... 58% 16.5M 0s
09:59:13 2350K .......... .......... .......... .......... .......... 60% 18.0M 0s
09:59:13 2400K .......... .......... .......... .......... .......... 61% 17.3M 0s
09:59:13 2450K .......... .......... .......... .......... .......... 62% 14.3M 0s
09:59:13 2500K .......... .......... .......... .......... .......... 63% 20.8M 0s
09:59:13 2550K .......... .......... .......... .......... .......... 65% 16.8M 0s
09:59:13 2600K .......... .......... .......... .......... .......... 66% 17.8M 0s
09:59:13 2650K .......... .......... .......... .......... .......... 67% 23.1M 0s
09:59:13 2700K .......... .......... .......... .......... .......... 68% 13.8M 0s
09:59:13 2750K .......... .......... .......... .......... .......... 70% 15.1M 0s
09:59:13 2800K .......... .......... .......... .......... .......... 71% 18.5M 0s
09:59:13 2850K .......... .......... .......... .......... .......... 72% 24.7M 0s
09:59:13 2900K .......... .......... .......... .......... .......... 73% 17.3M 0s
09:59:13 2950K .......... .......... .......... .......... .......... 75% 15.8M 0s
09:59:13 3000K .......... .......... .......... .......... .......... 76% 21.8M 0s
09:59:13 3050K .......... .......... .......... .......... .......... 77% 27.7M 0s
09:59:13 3100K .......... .......... .......... .......... .......... 78% 13.0M 0s
09:59:13 3150K .......... .......... .......... .......... .......... 80% 16.7M 0s
09:59:13 3200K .......... .......... .......... .......... .......... 81% 16.6M 0s
09:59:13 3250K .......... .......... .......... .......... .......... 82% 21.4M 0s
09:59:13 3300K .......... .......... .......... .......... .......... 84% 30.5M 0s
09:59:13 3350K .......... .......... .......... .......... .......... 85% 12.5M 0s
09:59:13 3400K .......... .......... .......... .......... .......... 86% 17.6M 0s
09:59:13 3450K .......... .......... .......... .......... .......... 87% 21.8M 0s
09:59:13 3500K .......... .......... .......... .......... .......... 89% 24.1M 0s
09:59:13 3550K .......... .......... .......... .......... .......... 90% 17.7M 0s
09:59:13 3600K .......... .......... .......... .......... .......... 91% 19.5M 0s
09:59:13 3650K .......... .......... .......... .......... .......... 92% 12.1M 0s
09:59:13 3700K .......... .......... .......... .......... .......... 94% 15.7M 0s
09:59:13 3750K .......... .......... .......... .......... .......... 95% 20.1M 0s
09:59:13 3800K .......... .......... .......... .......... .......... 96% 29.5M 0s
09:59:13 3850K .......... .......... .......... .......... .......... 97% 18.1M 0s
09:59:13 3900K .......... .......... .......... .......... .......... 99% 12.5M 0s
09:59:13 3950K .......... .......... .......... ....... 100% 26.8M=0.2s
09:59:13
09:59:13 2026-02-04 09:59:13 (15.9 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3-2.34.6.jar’ saved [4083366/4083366]
09:59:13
09:59:13 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/auth/2.34.6/auth-2.34.6.jar
09:59:13 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:59:13 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:59:13 --2026-02-04 09:59:13-- https://repo1.maven.org/maven2/software/amazon/awssdk/auth/2.34.6/auth-2.34.6.jar
09:59:13 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
09:59:13 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
09:59:14 HTTP request sent, awaiting response... 200 OK
09:59:14 Length: 234962 (229K) [application/java-archive]
09:59:14 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/auth-2.34.6.jar’
09:59:14
09:59:14 0K .......... .......... .......... .......... .......... 21% 35.4M 0s
09:59:14 50K .......... .......... .......... .......... .......... 43% 3.59M 0s
09:59:14 100K .......... .......... .......... .......... .......... 65% 98.3M 0s
09:59:14 150K .......... .......... .......... .......... .......... 87% 3.67M 0s
09:59:14 200K .......... .......... ......... 100% 282M=0.03s
09:59:14
09:59:14 2026-02-04 09:59:14 (7.76 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/auth-2.34.6.jar’ saved [234962/234962]
09:59:14
09:59:14 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/aws-core/2.34.6/aws-core-2.34.6.jar
09:59:14 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:59:14 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:59:14 --2026-02-04 09:59:14-- https://repo1.maven.org/maven2/software/amazon/awssdk/aws-core/2.34.6/aws-core-2.34.6.jar
09:59:14 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
09:59:14 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
09:59:14 HTTP request sent, awaiting response... 200 OK
09:59:14 Length: 192161 (188K) [application/java-archive]
09:59:14 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-core-2.34.6.jar’
09:59:14
09:59:14 0K .......... .......... .......... .......... .......... 26% 35.2M 0s
09:59:14 50K .......... .......... .......... .......... .......... 53% 3.45M 0s
09:59:14 100K .......... .......... .......... .......... .......... 79% 98.5M 0s
09:59:14 150K .......... .......... .......... ....... 100% 2.72M=0.03s
09:59:14
09:59:14 2026-02-04 09:59:14 (6.20 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-core-2.34.6.jar’ saved [192161/192161]
09:59:14
09:59:14 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/aws-sdk-java/2.34.6/aws-sdk-java-2.34.6.jar
09:59:14 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:59:14 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:59:14 --2026-02-04 09:59:14-- https://repo1.maven.org/maven2/software/amazon/awssdk/aws-sdk-java/2.34.6/aws-sdk-java-2.34.6.jar
09:59:14 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
09:59:14 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
09:59:14 HTTP request sent, awaiting response... 200 OK
09:59:14 Length: 10263 (10K) [application/java-archive]
09:59:14 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-sdk-java-2.34.6.jar’
09:59:14
09:59:14 0K .......... 100% 53.7M=0s
09:59:14
09:59:14 2026-02-04 09:59:14 (53.7 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-sdk-java-2.34.6.jar’ saved [10263/10263]
09:59:14
09:59:14 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/sdk-core/2.34.6/sdk-core-2.34.6.jar
09:59:14 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:59:14 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:59:14 --2026-02-04 09:59:14-- https://repo1.maven.org/maven2/software/amazon/awssdk/sdk-core/2.34.6/sdk-core-2.34.6.jar
09:59:14 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
09:59:14 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
09:59:14 HTTP request sent, awaiting response... 200 OK
09:59:14 Length: 1037104 (1013K) [application/java-archive]
09:59:14 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/sdk-core-2.34.6.jar’
09:59:14
09:59:14 0K .......... .......... .......... .......... .......... 4% 32.8M 0s
09:59:14 50K .......... .......... .......... .......... .......... 9% 3.49M 0s
09:59:14 100K .......... .......... .......... .......... .......... 14% 242M 0s
09:59:14 150K .......... .......... .......... .......... .......... 19% 3.76M 0s
09:59:14 200K .......... .......... .......... .......... .......... 24% 139M 0s
09:59:14 250K .......... .......... .......... .......... .......... 29% 44.6M 0s
09:59:14 300K .......... .......... .......... .......... .......... 34% 122M 0s
09:59:14 350K .......... .......... .......... .......... .......... 39% 67.3M 0s
09:59:14 400K .......... .......... .......... .......... .......... 44% 4.30M 0s
09:59:14 450K .......... .......... .......... .......... .......... 49% 265M 0s
09:59:14 500K .......... .......... .......... .......... .......... 54% 44.7M 0s
09:59:14 550K .......... .......... .......... .......... .......... 59% 117M 0s
09:59:14 600K .......... .......... .......... .......... .......... 64% 60.7M 0s
09:59:14 650K .......... .......... .......... .......... .......... 69% 4.36M 0s
09:59:14 700K .......... .......... .......... .......... .......... 74% 109M 0s
09:59:14 750K .......... .......... .......... .......... .......... 78% 55.3M 0s
09:59:14 800K .......... .......... .......... .......... .......... 83% 118M 0s
09:59:14 850K .......... .......... .......... .......... .......... 88% 55.6M 0s
09:59:14 900K .......... .......... .......... .......... .......... 93% 4.29M 0s
09:59:14 950K .......... .......... .......... .......... .......... 98% 332M 0s
09:59:14 1000K .......... .. 100% 16.9M=0.07s
09:59:14
09:59:14 2026-02-04 09:59:14 (13.9 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/sdk-core-2.34.6.jar’ saved [1037104/1037104]
09:59:14
09:59:14 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/annotations/2.34.6/annotations-2.34.6.jar
09:59:14 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:59:14 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:59:14 --2026-02-04 09:59:14-- https://repo1.maven.org/maven2/software/amazon/awssdk/annotations/2.34.6/annotations-2.34.6.jar
09:59:15 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
09:59:15 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
09:59:15 HTTP request sent, awaiting response... 200 OK
09:59:15 Length: 13758 (13K) [application/java-archive]
09:59:15 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/annotations-2.34.6.jar’
09:59:15
09:59:15 0K .......... ... 100% 57.6M=0s
09:59:15
09:59:15 2026-02-04 09:59:15 (57.6 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/annotations-2.34.6.jar’ saved [13758/13758]
09:59:15
09:59:15 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/regions/2.34.6/regions-2.34.6.jar
09:59:15 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:59:15 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:59:15 --2026-02-04 09:59:15-- https://repo1.maven.org/maven2/software/amazon/awssdk/regions/2.34.6/regions-2.34.6.jar
09:59:15 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
09:59:15 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
09:59:15 HTTP request sent, awaiting response... 200 OK
09:59:15 Length: 962220 (940K) [application/java-archive]
09:59:15 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/regions-2.34.6.jar’
09:59:15
09:59:15 0K .......... .......... .......... .......... .......... 5% 31.5M 0s
09:59:15 50K .......... .......... .......... .......... .......... 10% 3.50M 0s
09:59:15 100K .......... .......... .......... .......... .......... 15% 3.96M 0s
09:59:15 150K .......... .......... .......... .......... .......... 21% 41.2M 0s
09:59:15 200K .......... .......... .......... .......... .......... 26% 145M 0s
09:59:15 250K .......... .......... .......... .......... .......... 31% 107M 0s
09:59:15 300K .......... .......... .......... .......... .......... 37% 54.5M 0s
09:59:15 350K .......... .......... .......... .......... .......... 42% 4.52M 0s
09:59:15 400K .......... .......... .......... .......... .......... 47% 36.4M 0s
09:59:15 450K .......... .......... .......... .......... .......... 53% 76.0M 0s
09:59:15 500K .......... .......... .......... .......... .......... 58% 59.9M 0s
09:59:15 550K .......... .......... .......... .......... .......... 63% 70.3M 0s
09:59:15 600K .......... .......... .......... .......... .......... 69% 4.74M 0s
09:59:15 650K .......... .......... .......... .......... .......... 74% 32.2M 0s
09:59:15 700K .......... .......... .......... .......... .......... 79% 113M 0s
09:59:15 750K .......... .......... .......... .......... .......... 85% 59.1M 0s
09:59:15 800K .......... .......... .......... .......... .......... 90% 59.7M 0s
09:59:15 850K .......... .......... .......... .......... .......... 95% 4.91M 0s
09:59:15 900K .......... .......... .......... ......... 100% 18.8M=0.07s
09:59:15
09:59:15 2026-02-04 09:59:15 (12.9 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/regions-2.34.6.jar’ saved [962220/962220]
09:59:15
09:59:15 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/identity-spi/2.34.6/identity-spi-2.34.6.jar
09:59:15 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:59:15 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:59:15 --2026-02-04 09:59:15-- https://repo1.maven.org/maven2/software/amazon/awssdk/identity-spi/2.34.6/identity-spi-2.34.6.jar
09:59:15 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
09:59:15 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
09:59:15 HTTP request sent, awaiting response... 200 OK
09:59:15 Length: 30963 (30K) [application/java-archive]
09:59:15 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/identity-spi-2.34.6.jar’
09:59:15
09:59:15 0K .......... .......... .......... 100% 12.3M=0.002s
09:59:15
09:59:15 2026-02-04 09:59:15 (12.3 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/identity-spi-2.34.6.jar’ saved [30963/30963]
09:59:15
09:59:15 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/utils/2.34.6/utils-2.34.6.jar
09:59:15 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:59:15 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:59:15 --2026-02-04 09:59:15-- https://repo1.maven.org/maven2/software/amazon/awssdk/utils/2.34.6/utils-2.34.6.jar
09:59:15 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
09:59:15 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
09:59:16 HTTP request sent, awaiting response... 200 OK
09:59:16 Length: 241618 (236K) [application/java-archive]
09:59:16 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/utils-2.34.6.jar’
09:59:16
09:59:16 0K .......... .......... .......... .......... .......... 21% 3.51M 0s
09:59:16 50K .......... .......... .......... .......... .......... 42% 8.51M 0s
09:59:16 100K .......... .......... .......... .......... .......... 63% 4.57M 0s
09:59:16 150K .......... .......... .......... .......... .......... 84% 10.6M 0s
09:59:16 200K .......... .......... .......... ..... 100% 11.9M=0.04s
09:59:16
09:59:16 2026-02-04 09:59:16 (6.08 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/utils-2.34.6.jar’ saved [241618/241618]
09:59:16
09:59:16 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/apache-client/2.34.6/apache-client-2.34.6.jar
09:59:16 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:59:16 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:59:16 --2026-02-04 09:59:16-- https://repo1.maven.org/maven2/software/amazon/awssdk/apache-client/2.34.6/apache-client-2.34.6.jar
09:59:16 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
09:59:16 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
09:59:16 HTTP request sent, awaiting response... 200 OK
09:59:16 Length: 77013 (75K) [application/java-archive]
09:59:16 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/apache-client-2.34.6.jar’
09:59:16
09:59:16 0K .......... .......... .......... .......... .......... 66% 3.55M 0s
09:59:16 50K .......... .......... ..... 100% 16.0M=0.02s
09:59:16
09:59:16 2026-02-04 09:59:16 (4.81 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/apache-client-2.34.6.jar’ saved [77013/77013]
09:59:16
09:59:16 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/netty-nio-client/2.34.6/netty-nio-client-2.34.6.jar
09:59:16 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:59:16 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:59:16 --2026-02-04 09:59:16-- https://repo1.maven.org/maven2/software/amazon/awssdk/netty-nio-client/2.34.6/netty-nio-client-2.34.6.jar
09:59:16 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
09:59:16 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
09:59:16 HTTP request sent, awaiting response... 200 OK
09:59:16 Length: 292688 (286K) [application/java-archive]
09:59:16 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/netty-nio-client-2.34.6.jar’
09:59:16
09:59:16 0K .......... .......... .......... .......... .......... 17% 37.0M 0s
09:59:16 50K .......... .......... .......... .......... .......... 34% 3.25M 0s
09:59:16 100K .......... .......... .......... .......... .......... 52% 4.03M 0s
09:59:16 150K .......... .......... .......... .......... .......... 69% 104M 0s
09:59:16 200K .......... .......... .......... .......... .......... 87% 28.3M 0s
09:59:16 250K .......... .......... .......... ..... 100% 262M=0.03s
09:59:16
09:59:16 2026-02-04 09:59:16 (9.06 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/netty-nio-client-2.34.6.jar’ saved [292688/292688]
09:59:16
09:59:16 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/http-client-spi/2.34.6/http-client-spi-2.34.6.jar
09:59:16 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:59:16 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:59:16 --2026-02-04 09:59:16-- https://repo1.maven.org/maven2/software/amazon/awssdk/http-client-spi/2.34.6/http-client-spi-2.34.6.jar
09:59:16 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
09:59:16 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
09:59:16 HTTP request sent, awaiting response... 200 OK
09:59:16 Length: 91685 (90K) [application/java-archive]
09:59:16 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/http-client-spi-2.34.6.jar’
09:59:16
09:59:16 0K .......... .......... .......... .......... .......... 55% 33.8M 0s
09:59:16 50K .......... .......... .......... ......... 100% 2.80M=0.02s
09:59:17
09:59:17 2026-02-04 09:59:17 (5.74 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/http-client-spi-2.34.6.jar’ saved [91685/91685]
09:59:17
09:59:17 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/retries/2.34.6/retries-2.34.6.jar
09:59:17 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:59:17 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:59:17 --2026-02-04 09:59:17-- https://repo1.maven.org/maven2/software/amazon/awssdk/retries/2.34.6/retries-2.34.6.jar
09:59:17 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
09:59:17 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
09:59:17 HTTP request sent, awaiting response... 200 OK
09:59:17 Length: 66309 (65K) [application/java-archive]
09:59:17 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/retries-2.34.6.jar’
09:59:17
09:59:17 0K .......... .......... .......... .......... .......... 77% 34.1M 0s
09:59:17 50K .......... .... 100% 166M=0.002s
09:59:17
09:59:17 2026-02-04 09:59:17 (41.6 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/retries-2.34.6.jar’ saved [66309/66309]
09:59:17
09:59:17 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-core/2.20.0/jackson-core-2.20.0.jar
09:59:17 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:59:17 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:59:17 --2026-02-04 09:59:17-- https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-core/2.20.0/jackson-core-2.20.0.jar
09:59:17 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
09:59:17 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
09:59:17 HTTP request sent, awaiting response... 200 OK
09:59:17 Length: 593063 (579K) [application/java-archive]
09:59:17 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-core-2.20.0.jar’
09:59:17
09:59:17 0K .......... .......... .......... .......... .......... 8% 3.45M 0s
09:59:17 50K .......... .......... .......... .......... .......... 17% 8.87M 0s
09:59:17 100K .......... .......... .......... .......... .......... 25% 4.73M 0s
09:59:17 150K .......... .......... .......... .......... .......... 34% 11.6M 0s
09:59:17 200K .......... .......... .......... .......... .......... 43% 8.74M 0s
09:59:17 250K .......... .......... .......... .......... .......... 51% 15.9M 0s
09:59:17 300K .......... .......... .......... .......... .......... 60% 19.8M 0s
09:59:17 350K .......... .......... .......... .......... .......... 69% 19.0M 0s
09:59:17 400K .......... .......... .......... .......... .......... 77% 16.5M 0s
09:59:17 450K .......... .......... .......... .......... .......... 86% 14.2M 0s
09:59:17 500K .......... .......... .......... .......... .......... 94% 36.5M 0s
09:59:17 550K .......... .......... ......... 100% 14.1M=0.06s
09:59:17
09:59:17 2026-02-04 09:59:17 (9.81 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-core-2.20.0.jar’ saved [593063/593063]
09:59:17
09:59:17 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.20.0/jackson-databind-2.20.0.jar
09:59:17 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:59:17 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:59:17 --2026-02-04 09:59:17-- https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.20.0/jackson-databind-2.20.0.jar
09:59:17 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
09:59:17 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
09:59:17 HTTP request sent, awaiting response... 200 OK
09:59:17 Length: 1688471 (1.6M) [application/java-archive]
09:59:17 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-databind-2.20.0.jar’
09:59:17
09:59:17 0K .......... .......... .......... .......... .......... 3% 32.9M 0s
09:59:17 50K .......... .......... .......... .......... .......... 6% 3.61M 0s
09:59:17 100K .......... .......... .......... .......... .......... 9% 65.6M 0s
09:59:17 150K .......... .......... .......... .......... .......... 12% 3.84M 0s
09:59:17 200K .......... .......... .......... .......... .......... 15% 122M 0s
09:59:17 250K .......... .......... .......... .......... .......... 18% 62.7M 0s
09:59:17 300K .......... .......... .......... .......... .......... 21% 59.5M 0s
09:59:17 350K .......... .......... .......... .......... .......... 24% 293M 0s
09:59:17 400K .......... .......... .......... .......... .......... 27% 4.17M 0s
09:59:17 450K .......... .......... .......... .......... .......... 30% 40.2M 0s
09:59:17 500K .......... .......... .......... .......... .......... 33% 196M 0s
09:59:17 550K .......... .......... .......... .......... .......... 36% 83.8M 0s
09:59:17 600K .......... .......... .......... .......... .......... 39% 98.0M 0s
09:59:17 650K .......... .......... .......... .......... .......... 42% 4.19M 0s
09:59:17 700K .......... .......... .......... .......... .......... 45% 36.6M 0s
09:59:17 750K .......... .......... .......... .......... .......... 48% 264M 0s
09:59:17 800K .......... .......... .......... .......... .......... 51% 124M 0s
09:59:17 850K .......... .......... .......... .......... .......... 54% 76.0M 0s
09:59:17 900K .......... .......... .......... .......... .......... 57% 4.27M 0s
09:59:17 950K .......... .......... .......... .......... .......... 60% 47.9M 0s
09:59:17 1000K .......... .......... .......... .......... .......... 63% 253M 0s
09:59:17 1050K .......... .......... .......... .......... .......... 66% 112M 0s
09:59:17 1100K .......... .......... .......... .......... .......... 69% 63.8M 0s
09:59:17 1150K .......... .......... .......... .......... .......... 72% 4.21M 0s
09:59:17 1200K .......... .......... .......... .......... .......... 75% 290M 0s
09:59:17 1250K .......... .......... .......... .......... .......... 78% 57.8M 0s
09:59:17 1300K .......... .......... .......... .......... .......... 81% 51.7M 0s
09:59:17 1350K .......... .......... .......... .......... .......... 84% 72.7M 0s
09:59:17 1400K .......... .......... .......... .......... .......... 87% 4.30M 0s
09:59:17 1450K .......... .......... .......... .......... .......... 90% 20.5M 0s
09:59:17 1500K .......... .......... .......... .......... .......... 94% 16.6M 0s
09:59:17 1550K .......... .......... .......... .......... .......... 97% 17.4M 0s
09:59:17 1600K .......... .......... .......... .......... ........ 100% 20.8M=0.1s
09:59:17
09:59:17 2026-02-04 09:59:17 (14.8 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-databind-2.20.0.jar’ saved [1688471/1688471]
09:59:17
09:59:17 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/datatype/jackson-datatype-jdk8/2.20.0/jackson-datatype-jdk8-2.20.0.jar
09:59:17 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:59:17 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:59:17 --2026-02-04 09:59:17-- https://repo1.maven.org/maven2/com/fasterxml/jackson/datatype/jackson-datatype-jdk8/2.20.0/jackson-datatype-jdk8-2.20.0.jar
09:59:18 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
09:59:18 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
09:59:18 HTTP request sent, awaiting response... 200 OK
09:59:18 Length: 36400 (36K) [application/java-archive]
09:59:18 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-datatype-jdk8-2.20.0.jar’
09:59:18
09:59:18 0K .......... .......... .......... ..... 100% 31.7M=0.001s
09:59:18
09:59:18 2026-02-04 09:59:18 (31.7 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-datatype-jdk8-2.20.0.jar’ saved [36400/36400]
09:59:18
09:59:18 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-annotations/2.20/jackson-annotations-2.20.jar
09:59:18 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:59:18 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:59:18 --2026-02-04 09:59:18-- https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-annotations/2.20/jackson-annotations-2.20.jar
09:59:18 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
09:59:18 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
09:59:18 HTTP request sent, awaiting response... 200 OK
09:59:18 Length: 79195 (77K) [application/java-archive]
09:59:18 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-annotations-2.20.jar’
09:59:18
09:59:18 0K .......... .......... .......... .......... .......... 64% 34.6M 0s
09:59:18 50K .......... .......... ....... 100% 1.98M=0.01s
09:59:18
09:59:18 2026-02-04 09:59:18 (5.07 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-annotations-2.20.jar’ saved [79195/79195]
09:59:18
09:59:18 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar
09:59:18 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:59:18 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:59:18 --2026-02-04 09:59:18-- https://repo.maven.apache.org/maven2/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar
09:59:18 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
09:59:18 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
09:59:18 HTTP request sent, awaiting response... 200 OK
09:59:18 Length: 277829 (271K) [application/java-archive]
09:59:18 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-classic-1.3.14.jar’
09:59:18
09:59:18 0K .......... .......... .......... .......... .......... 18% 27.8M 0s
09:59:18 50K .......... .......... .......... .......... .......... 36% 3.60M 0s
09:59:18 100K .......... .......... .......... .......... .......... 55% 149M 0s
09:59:18 150K .......... .......... .......... .......... .......... 73% 3.75M 0s
09:59:18 200K .......... .......... .......... .......... .......... 92% 59.4M 0s
09:59:18 250K .......... .......... . 100% 271M=0.03s
09:59:18
09:59:18 2026-02-04 09:59:18 (8.96 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-classic-1.3.14.jar’ saved [277829/277829]
09:59:18
09:59:18 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar
09:59:18 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:59:18 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:59:18 --2026-02-04 09:59:18-- https://repo.maven.apache.org/maven2/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar
09:59:19 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
09:59:19 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
09:59:19 HTTP request sent, awaiting response... 200 OK
09:59:19 Length: 579673 (566K) [application/java-archive]
09:59:19 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-core-1.3.14.jar’
09:59:19
09:59:19 0K .......... .......... .......... .......... .......... 8% 32.0M 0s
09:59:19 50K .......... .......... .......... .......... .......... 17% 3.57M 0s
09:59:19 100K .......... .......... .......... .......... .......... 26% 3.98M 0s
09:59:19 150K .......... .......... .......... .......... .......... 35% 35.0M 0s
09:59:19 200K .......... .......... .......... .......... .......... 44% 167M 0s
09:59:19 250K .......... .......... .......... .......... .......... 52% 53.3M 0s
09:59:19 300K .......... .......... .......... .......... .......... 61% 340M 0s
09:59:19 350K .......... .......... .......... .......... .......... 70% 4.41M 0s
09:59:19 400K .......... .......... .......... .......... .......... 79% 34.2M 0s
09:59:19 450K .......... .......... .......... .......... .......... 88% 71.1M 0s
09:59:19 500K .......... .......... .......... .......... .......... 97% 106M 0s
09:59:19 550K .......... ...... 100% 234M=0.04s
09:59:19
09:59:19 2026-02-04 09:59:19 (12.6 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-core-1.3.14.jar’ saved [579673/579673]
09:59:19
09:59:19 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/dev/zarr/zarr-java/0.0.10/zarr-java-0.0.10.jar
09:59:19 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:59:19 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:59:19 --2026-02-04 09:59:19-- https://repo.maven.apache.org/maven2/dev/zarr/zarr-java/0.0.10/zarr-java-0.0.10.jar
09:59:19 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
09:59:19 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.18.12|:443... connected.
09:59:19 HTTP request sent, awaiting response... 200 OK
09:59:19 Length: 175836 (172K) [application/java-archive]
09:59:19 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zarr-java-0.0.10.jar’
09:59:19
09:59:19 0K .......... .......... .......... .......... .......... 29% 28.7M 0s
09:59:19 50K .......... .......... .......... .......... .......... 58% 3.60M 0s
09:59:19 100K .......... .......... .......... .......... .......... 87% 3.85M 0s
09:59:19 150K .......... .......... . 100% 32.8M=0.03s
09:59:19
09:59:19 2026-02-04 09:59:19 (5.86 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zarr-java-0.0.10.jar’ saved [175836/175836]
09:59:19
09:59:19 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
09:59:19 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:59:19 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:59:19 --2026-02-04 09:59:19-- https://repo.maven.apache.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
09:59:19 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
09:59:19 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
09:59:19 HTTP request sent, awaiting response... 200 OK
09:59:19 Length: 889211 (868K) [application/java-archive]
09:59:19 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’
09:59:19
09:59:19 0K .......... .......... .......... .......... .......... 5% 33.9M 0s
09:59:19 50K .......... .......... .......... .......... .......... 11% 3.41M 0s
09:59:19 100K .......... .......... .......... .......... .......... 17% 3.84M 0s
09:59:19 150K .......... .......... .......... .......... .......... 23% 30.8M 0s
09:59:19 200K .......... .......... .......... .......... .......... 28% 73.6M 0s
09:59:19 250K .......... .......... .......... .......... .......... 34% 54.8M 0s
09:59:19 300K .......... .......... .......... .......... .......... 40% 115M 0s
09:59:19 350K .......... .......... .......... .......... .......... 46% 4.63M 0s
09:59:19 400K .......... .......... .......... .......... .......... 51% 21.8M 0s
09:59:19 450K .......... .......... .......... .......... .......... 57% 112M 0s
09:59:19 500K .......... .......... .......... .......... .......... 63% 62.4M 0s
09:59:19 550K .......... .......... .......... .......... .......... 69% 184M 0s
09:59:19 600K .......... .......... .......... .......... .......... 74% 59.7M 0s
09:59:19 650K .......... .......... .......... .......... .......... 80% 3.95M 0s
09:59:19 700K .......... .......... .......... .......... .......... 86% 57.2M 0s
09:59:19 750K .......... .......... .......... .......... .......... 92% 182M 0s
09:59:19 800K .......... .......... .......... .......... .......... 97% 64.9M 0s
09:59:19 850K .......... ........ 100% 295M=0.06s
09:59:19
09:59:19 2026-02-04 09:59:19 (13.8 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’ saved [889211/889211]
09:59:19
09:59:19 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/org/apache/tika/tika-core/1.28.5/tika-core-1.28.5.jar
09:59:19 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:59:19 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:59:19 --2026-02-04 09:59:19-- https://repo.maven.apache.org/maven2/org/apache/tika/tika-core/1.28.5/tika-core-1.28.5.jar
09:59:19 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
09:59:19 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.18.12|:443... connected.
09:59:20 HTTP request sent, awaiting response... 200 OK
09:59:20 Length: 736051 (719K) [application/java-archive]
09:59:20 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/tika-core-1.28.5.jar’
09:59:20
09:59:20 0K .......... .......... .......... .......... .......... 6% 3.57M 0s
09:59:20 50K .......... .......... .......... .......... .......... 13% 9.03M 0s
09:59:20 100K .......... .......... .......... .......... .......... 20% 4.55M 0s
09:59:20 150K .......... .......... .......... .......... .......... 27% 10.2M 0s
09:59:20 200K .......... .......... .......... .......... .......... 34% 10.4M 0s
09:59:20 250K .......... .......... .......... .......... .......... 41% 14.9M 0s
09:59:20 300K .......... .......... .......... .......... .......... 48% 18.4M 0s
09:59:20 350K .......... .......... .......... .......... .......... 55% 18.4M 0s
09:59:20 400K .......... .......... .......... .......... .......... 62% 19.3M 0s
09:59:20 450K .......... .......... .......... .......... .......... 69% 14.8M 0s
09:59:20 500K .......... .......... .......... .......... .......... 76% 12.4M 0s
09:59:20 550K .......... .......... .......... .......... .......... 83% 24.8M 0s
09:59:20 600K .......... .......... .......... .......... .......... 90% 20.5M 0s
09:59:20 650K .......... .......... .......... .......... .......... 97% 13.3M 0s
09:59:20 700K .......... ........ 100% 244M=0.07s
09:59:20
09:59:20 2026-02-04 09:59:20 (10.7 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/tika-core-1.28.5.jar’ saved [736051/736051]
09:59:20
09:59:20 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/squareup/okhttp/okhttp/2.7.5/okhttp-2.7.5.jar
09:59:20 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:59:20 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:59:20 --2026-02-04 09:59:20-- https://repo1.maven.org/maven2/com/squareup/okhttp/okhttp/2.7.5/okhttp-2.7.5.jar
09:59:20 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
09:59:20 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
09:59:20 HTTP request sent, awaiting response... 200 OK
09:59:20 Length: 331034 (323K) [application/java-archive]
09:59:20 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/okhttp-2.7.5.jar’
09:59:20
09:59:20 0K .......... .......... .......... .......... .......... 15% 3.53M 0s
09:59:20 50K .......... .......... .......... .......... .......... 30% 21.4M 0s
09:59:20 100K .......... .......... .......... .......... .......... 46% 3.34M 0s
09:59:20 150K .......... .......... .......... .......... .......... 61% 13.1M 0s
09:59:20 200K .......... .......... .......... .......... .......... 77% 9.98M 0s
09:59:20 250K .......... .......... .......... .......... .......... 92% 27.3M 0s
09:59:20 300K .......... .......... ... 100% 322M=0.04s
09:59:20
09:59:20 2026-02-04 09:59:20 (7.66 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/okhttp-2.7.5.jar’ saved [331034/331034]
09:59:20
09:59:20 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/github/luben/zstd-jni/1.5.5-7/zstd-jni-1.5.5-7.jar
09:59:20 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:59:20 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:59:20 --2026-02-04 09:59:20-- https://repo1.maven.org/maven2/com/github/luben/zstd-jni/1.5.5-7/zstd-jni-1.5.5-7.jar
09:59:20 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
09:59:20 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
09:59:20 HTTP request sent, awaiting response... 200 OK
09:59:20 Length: 6749842 (6.4M) [application/java-archive]
09:59:20 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zstd-jni-1.5.5-7.jar’
09:59:20
09:59:20 0K .......... .......... .......... .......... .......... 0% 3.61M 2s
09:59:20 50K .......... .......... .......... .......... .......... 1% 13.1M 1s
09:59:20 100K .......... .......... .......... .......... .......... 2% 3.54M 1s
09:59:20 150K .......... .......... .......... .......... .......... 3% 12.5M 1s
09:59:20 200K .......... .......... .......... .......... .......... 3% 8.80M 1s
09:59:20 250K .......... .......... .......... .......... .......... 4% 14.4M 1s
09:59:20 300K .......... .......... .......... .......... .......... 5% 18.1M 1s
09:59:20 350K .......... .......... .......... .......... .......... 6% 12.7M 1s
09:59:20 400K .......... .......... .......... .......... .......... 6% 17.1M 1s
09:59:20 450K .......... .......... .......... .......... .......... 7% 17.1M 1s
09:59:20 500K .......... .......... .......... .......... .......... 8% 16.3M 1s
09:59:20 550K .......... .......... .......... .......... .......... 9% 23.6M 1s
09:59:20 600K .......... .......... .......... .......... .......... 9% 17.9M 1s
09:59:20 650K .......... .......... .......... .......... .......... 10% 24.3M 1s
09:59:20 700K .......... .......... .......... .......... .......... 11% 12.2M 1s
09:59:20 750K .......... .......... .......... .......... .......... 12% 78.6M 1s
09:59:20 800K .......... .......... .......... .......... .......... 12% 11.4M 1s
09:59:20 850K .......... .......... .......... .......... .......... 13% 17.8M 0s
09:59:20 900K .......... .......... .......... .......... .......... 14% 25.5M 0s
09:59:20 950K .......... .......... .......... .......... .......... 15% 10.5M 0s
09:59:20 1000K .......... .......... .......... .......... .......... 15% 185M 0s
09:59:20 1050K .......... .......... .......... .......... .......... 16% 10.6M 0s
09:59:20 1100K .......... .......... .......... .......... .......... 17% 93.8M 0s
09:59:20 1150K .......... .......... .......... .......... .......... 18% 13.9M 0s
09:59:20 1200K .......... .......... .......... .......... .......... 18% 10.5M 0s
09:59:20 1250K .......... .......... .......... .......... .......... 19% 146M 0s
09:59:20 1300K .......... .......... .......... .......... .......... 20% 10.5M 0s
09:59:20 1350K .......... .......... .......... .......... .......... 21% 105M 0s
09:59:20 1400K .......... .......... .......... .......... .......... 21% 13.7M 0s
09:59:20 1450K .......... .......... .......... .......... .......... 22% 10.8M 0s
09:59:20 1500K .......... .......... .......... .......... .......... 23% 21.2M 0s
09:59:20 1550K .......... .......... .......... .......... .......... 24% 17.5M 0s
09:59:20 1600K .......... .......... .......... .......... .......... 25% 15.5M 0s
09:59:20 1650K .......... .......... .......... .......... .......... 25% 70.0M 0s
09:59:20 1700K .......... .......... .......... .......... .......... 26% 10.8M 0s
09:59:20 1750K .......... .......... .......... .......... .......... 27% 31.9M 0s
09:59:20 1800K .......... .......... .......... .......... .......... 28% 13.9M 0s
09:59:20 1850K .......... .......... .......... .......... .......... 28% 19.0M 0s
09:59:20 1900K .......... .......... .......... .......... .......... 29% 32.6M 0s
09:59:20 1950K .......... .......... .......... .......... .......... 30% 10.9M 0s
09:59:20 2000K .......... .......... .......... .......... .......... 31% 31.4M 0s
09:59:20 2050K .......... .......... .......... .......... .......... 31% 13.5M 0s
09:59:20 2100K .......... .......... .......... .......... .......... 32% 20.1M 0s
09:59:20 2150K .......... .......... .......... .......... .......... 33% 34.1M 0s
09:59:20 2200K .......... .......... .......... .......... .......... 34% 23.8M 0s
09:59:20 2250K .......... .......... .......... .......... .......... 34% 11.1M 0s
09:59:20 2300K .......... .......... .......... .......... .......... 35% 15.3M 0s
09:59:20 2350K .......... .......... .......... .......... .......... 36% 15.4M 0s
09:59:20 2400K .......... .......... .......... .......... .......... 37% 65.8M 0s
09:59:20 2450K .......... .......... .......... .......... .......... 37% 12.8M 0s
09:59:20 2500K .......... .......... .......... .......... .......... 38% 15.7M 0s
09:59:20 2550K .......... .......... .......... .......... .......... 39% 17.9M 0s
09:59:20 2600K .......... .......... .......... .......... .......... 40% 18.5M 0s
09:59:20 2650K .......... .......... .......... .......... .......... 40% 36.8M 0s
09:59:20 2700K .......... .......... .......... .......... .......... 41% 10.7M 0s
09:59:20 2750K .......... .......... .......... .......... .......... 42% 20.3M 0s
09:59:20 2800K .......... .......... .......... .......... .......... 43% 17.9M 0s
09:59:20 2850K .......... .......... .......... .......... .......... 43% 15.1M 0s
09:59:20 2900K .......... .......... .......... .......... .......... 44% 78.4M 0s
09:59:20 2950K .......... .......... .......... .......... .......... 45% 10.5M 0s
09:59:20 3000K .......... .......... .......... .......... .......... 46% 18.9M 0s
09:59:20 3050K .......... .......... .......... .......... .......... 47% 19.0M 0s
09:59:20 3100K .......... .......... .......... .......... .......... 47% 16.5M 0s
09:59:20 3150K .......... .......... .......... .......... .......... 48% 60.4M 0s
09:59:20 3200K .......... .......... .......... .......... .......... 49% 10.4M 0s
09:59:20 3250K .......... .......... .......... .......... .......... 50% 20.5M 0s
09:59:20 3300K .......... .......... .......... .......... .......... 50% 234M 0s
09:59:20 3350K .......... .......... .......... .......... .......... 51% 8.62M 0s
09:59:20 3400K .......... .......... .......... .......... .......... 52% 25.7M 0s
09:59:20 3450K .......... .......... .......... .......... .......... 53% 13.5M 0s
09:59:20 3500K .......... .......... .......... .......... .......... 53% 21.2M 0s
09:59:20 3550K .......... .......... .......... .......... .......... 54% 32.6M 0s
09:59:20 3600K .......... .......... .......... .......... .......... 55% 33.5M 0s
09:59:20 3650K .......... .......... .......... .......... .......... 56% 15.8M 0s
09:59:20 3700K .......... .......... .......... .......... .......... 56% 9.78M 0s
09:59:20 3750K .......... .......... .......... .......... .......... 57% 18.9M 0s
09:59:20 3800K .......... .......... .......... .......... .......... 58% 31.8M 0s
09:59:20 3850K .......... .......... .......... .......... .......... 59% 34.4M 0s
09:59:20 3900K .......... .......... .......... .......... .......... 59% 10.1M 0s
09:59:20 3950K .......... .......... .......... .......... .......... 60% 14.9M 0s
09:59:20 4000K .......... .......... .......... .......... .......... 61% 20.9M 0s
09:59:20 4050K .......... .......... .......... .......... .......... 62% 28.6M 0s
09:59:20 4100K .......... .......... .......... .......... .......... 62% 30.4M 0s
09:59:20 4150K .......... .......... .......... .......... .......... 63% 10.4M 0s
09:59:20 4200K .......... .......... .......... .......... .......... 64% 15.4M 0s
09:59:20 4250K .......... .......... .......... .......... .......... 65% 20.1M 0s
09:59:20 4300K .......... .......... .......... .......... .......... 65% 26.8M 0s
09:59:20 4350K .......... .......... .......... .......... .......... 66% 29.6M 0s
09:59:20 4400K .......... .......... .......... .......... .......... 67% 18.5M 0s
09:59:21 4450K .......... .......... .......... .......... .......... 68% 15.1M 0s
09:59:21 4500K .......... .......... .......... .......... .......... 69% 21.9M 0s
09:59:21 4550K .......... .......... .......... .......... .......... 69% 12.9M 0s
09:59:21 4600K .......... .......... .......... .......... .......... 70% 27.6M 0s
09:59:21 4650K .......... .......... .......... .......... .......... 71% 19.2M 0s
09:59:21 4700K .......... .......... .......... .......... .......... 72% 15.7M 0s
09:59:21 4750K .......... .......... .......... .......... .......... 72% 21.1M 0s
09:59:21 4800K .......... .......... .......... .......... .......... 73% 20.0M 0s
09:59:21 4850K .......... .......... .......... .......... .......... 74% 15.3M 0s
09:59:21 4900K .......... .......... .......... .......... .......... 75% 19.2M 0s
09:59:21 4950K .......... .......... .......... .......... .......... 75% 15.7M 0s
09:59:21 5000K .......... .......... .......... .......... .......... 76% 21.7M 0s
09:59:21 5050K .......... .......... .......... .......... .......... 77% 19.8M 0s
09:59:21 5100K .......... .......... .......... .......... .......... 78% 14.9M 0s
09:59:21 5150K .......... .......... .......... .......... .......... 78% 18.3M 0s
09:59:21 5200K .......... .......... .......... .......... .......... 79% 17.1M 0s
09:59:21 5250K .......... .......... .......... .......... .......... 80% 19.6M 0s
09:59:21 5300K .......... .......... .......... .......... .......... 81% 19.5M 0s
09:59:21 5350K .......... .......... .......... .......... .......... 81% 15.2M 0s
09:59:21 5400K .......... .......... .......... .......... .......... 82% 20.2M 0s
09:59:21 5450K .......... .......... .......... .......... .......... 83% 16.6M 0s
09:59:21 5500K .......... .......... .......... .......... .......... 84% 18.9M 0s
09:59:21 5550K .......... .......... .......... .......... .......... 84% 20.1M 0s
09:59:21 5600K .......... .......... .......... .......... .......... 85% 31.2M 0s
09:59:21 5650K .......... .......... .......... .......... .......... 86% 12.3M 0s
09:59:21 5700K .......... .......... .......... .......... .......... 87% 19.2M 0s
09:59:21 5750K .......... .......... .......... .......... .......... 87% 13.0M 0s
09:59:21 5800K .......... .......... .......... .......... .......... 88% 26.5M 0s
09:59:21 5850K .......... .......... .......... .......... .......... 89% 35.8M 0s
09:59:21 5900K .......... .......... .......... .......... .......... 90% 11.9M 0s
09:59:21 5950K .......... .......... .......... .......... .......... 91% 19.9M 0s
09:59:21 6000K .......... .......... .......... .......... .......... 91% 13.1M 0s
09:59:21 6050K .......... .......... .......... .......... .......... 92% 27.0M 0s
09:59:21 6100K .......... .......... .......... .......... .......... 93% 34.9M 0s
09:59:21 6150K .......... .......... .......... .......... .......... 94% 11.6M 0s
09:59:21 6200K .......... .......... .......... .......... .......... 94% 14.0M 0s
09:59:21 6250K .......... .......... .......... .......... .......... 95% 19.7M 0s
09:59:21 6300K .......... .......... .......... .......... .......... 96% 24.7M 0s
09:59:21 6350K .......... .......... .......... .......... .......... 97% 34.5M 0s
09:59:21 6400K .......... .......... .......... .......... .......... 97% 22.2M 0s
09:59:21 6450K .......... .......... .......... .......... .......... 98% 19.8M 0s
09:59:21 6500K .......... .......... .......... .......... .......... 99% 13.7M 0s
09:59:21 6550K .......... .......... .......... .......... . 100% 18.8M=0.4s
09:59:21
09:59:21 2026-02-04 09:59:21 (16.8 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zstd-jni-1.5.5-7.jar’ saved [6749842/6749842]
09:59:21
09:59:21 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/scalableminds/blosc-java/0.1-1.21.4/blosc-java-0.1-1.21.4.jar
09:59:21 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
09:59:21 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
09:59:21 --2026-02-04 09:59:21-- https://repo1.maven.org/maven2/com/scalableminds/blosc-java/0.1-1.21.4/blosc-java-0.1-1.21.4.jar
09:59:21 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
09:59:21 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
09:59:21 HTTP request sent, awaiting response... 200 OK
09:59:21 Length: 1732435 (1.7M) [application/java-archive]
09:59:21 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/blosc-java-0.1-1.21.4.jar’
09:59:21
09:59:21 0K .......... .......... .......... .......... .......... 2% 31.9M 0s
09:59:21 50K .......... .......... .......... .......... .......... 5% 3.57M 0s
09:59:21 100K .......... .......... .......... .......... .......... 8% 3.95M 0s
09:59:21 150K .......... .......... .......... .......... .......... 11% 37.2M 0s
09:59:21 200K .......... .......... .......... .......... .......... 14% 243M 0s
09:59:21 250K .......... .......... .......... .......... .......... 17% 60.9M 0s
09:59:21 300K .......... .......... .......... .......... .......... 20% 59.4M 0s
09:59:21 350K .......... .......... .......... .......... .......... 23% 4.18M 0s
09:59:21 400K .......... .......... .......... .......... .......... 26% 104M 0s
09:59:21 450K .......... .......... .......... .......... .......... 29% 218M 0s
09:59:21 500K .......... .......... .......... .......... .......... 32% 65.4M 0s
09:59:21 550K .......... .......... .......... .......... .......... 35% 60.2M 0s
09:59:21 600K .......... .......... .......... .......... .......... 38% 4.75M 0s
09:59:21 650K .......... .......... .......... .......... .......... 41% 24.9M 0s
09:59:21 700K .......... .......... .......... .......... .......... 44% 86.1M 0s
09:59:21 750K .......... .......... .......... .......... .......... 47% 59.2M 0s
09:59:21 800K .......... .......... .......... .......... .......... 50% 268M 0s
09:59:21 850K .......... .......... .......... .......... .......... 53% 4.87M 0s
09:59:21 900K .......... .......... .......... .......... .......... 56% 24.3M 0s
09:59:21 950K .......... .......... .......... .......... .......... 59% 73.5M 0s
09:59:21 1000K .......... .......... .......... .......... .......... 62% 287M 0s
09:59:21 1050K .......... .......... .......... .......... .......... 65% 57.5M 0s
09:59:21 1100K .......... .......... .......... .......... .......... 67% 4.91M 0s
09:59:21 1150K .......... .......... .......... .......... .......... 70% 21.4M 0s
09:59:21 1200K .......... .......... .......... .......... .......... 73% 45.4M 0s
09:59:21 1250K .......... .......... .......... .......... .......... 76% 282M 0s
09:59:21 1300K .......... .......... .......... .......... .......... 79% 172M 0s
09:59:21 1350K .......... .......... .......... .......... .......... 82% 57.3M 0s
09:59:21 1400K .......... .......... .......... .......... .......... 85% 4.17M 0s
09:59:21 1450K .......... .......... .......... .......... .......... 88% 13.2M 0s
09:59:21 1500K .......... .......... .......... .......... .......... 91% 24.3M 0s
09:59:21 1550K .......... .......... .......... .......... .......... 94% 17.6M 0s
09:59:21 1600K .......... .......... .......... .......... .......... 97% 17.2M 0s
09:59:21 1650K .......... .......... .......... .......... . 100% 20.2M=0.1s
09:59:21
09:59:21 2026-02-04 09:59:21 (14.8 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/blosc-java-0.1-1.21.4.jar’ saved [1732435/1732435]
09:59:21
09:59:21 + for x in *.jar
09:59:21 + mv omero-zarr-pixel-buffer-0.6.2-SNAPSHOT.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server
09:59:21 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
09:59:21 ++ deactivate nondestructive
09:59:21 ++ '[' -n '' ']'
09:59:21 ++ '[' -n '' ']'
09:59:21 ++ hash -r
09:59:21 ++ '[' -n '' ']'
09:59:21 ++ unset VIRTUAL_ENV
09:59:21 ++ unset VIRTUAL_ENV_PROMPT
09:59:21 ++ '[' '!' nondestructive = nondestructive ']'
09:59:21 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
09:59:21 ++ export VIRTUAL_ENV
09:59:21 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:59:21 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:59:21 ++ export PATH
09:59:21 ++ '[' -n '' ']'
09:59:21 ++ '[' -z '' ']'
09:59:21 ++ _OLD_VIRTUAL_PS1=
09:59:21 ++ PS1='(.venv3) '
09:59:21 ++ export PS1
09:59:21 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
09:59:21 ++ export VIRTUAL_ENV_PROMPT
09:59:21 ++ hash -r
09:59:21 + pip install -U pip
09:59:21 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
09:59:21 Collecting pip
09:59:21 Using cached pip-26.0-py3-none-any.whl (1.8 MB)
09:59:22 Installing collected packages: pip
09:59:22 Attempting uninstall: pip
09:59:22 Found existing installation: pip 22.3.1
09:59:22 Uninstalling pip-22.3.1:
09:59:22 Successfully uninstalled pip-22.3.1
09:59:23 Successfully installed pip-26.0
09:59:23 WARNING: There was an error checking the latest version of pip.
09:59:23 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
09:59:23 Collecting zeroc-ice==3.6.5
09:59:23 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
09:59:25 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 20.0 MB/s 0:00:01
09:59:25 Installing collected packages: zeroc-ice
09:59:26 Successfully installed zeroc-ice-3.6.5
09:59:26 + pip install markdown
09:59:26 Collecting markdown
09:59:26 Using cached markdown-3.10.1-py3-none-any.whl.metadata (5.1 kB)
09:59:26 Using cached markdown-3.10.1-py3-none-any.whl (107 kB)
09:59:26 Installing collected packages: markdown
09:59:27 Successfully installed markdown-3.10.1
09:59:27 + pip install reportlab
09:59:27 Collecting reportlab
09:59:27 Using cached reportlab-4.4.9-py3-none-any.whl.metadata (1.7 kB)
09:59:27 Collecting pillow>=9.0.0 (from reportlab)
09:59:27 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.8 kB)
09:59:27 Collecting charset-normalizer (from reportlab)
09:59:27 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (37 kB)
09:59:27 Using cached reportlab-4.4.9-py3-none-any.whl (2.0 MB)
09:59:27 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB)
09:59:27 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB)
09:59:27 Installing collected packages: pillow, charset-normalizer, reportlab
09:59:28
09:59:28 Successfully installed charset-normalizer-3.4.4 pillow-12.1.0 reportlab-4.4.9
09:59:28 + pip install omego
09:59:29 Collecting omego
09:59:29 Using cached omego-0.7.0-py3-none-any.whl
09:59:29 Collecting future (from omego)
09:59:29 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
09:59:29 Collecting yaclifw>=0.1.1 (from omego)
09:59:29 Using cached yaclifw-0.2.0-py3-none-any.whl
09:59:29 Collecting six (from yaclifw>=0.1.1->omego)
09:59:29 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
09:59:29 Using cached future-1.0.0-py3-none-any.whl (491 kB)
09:59:29 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
09:59:29 Installing collected packages: six, future, yaclifw, omego
09:59:29
09:59:29 Successfully installed future-1.0.0 omego-0.7.0 six-1.17.0 yaclifw-0.2.0
09:59:29 + pip install tables
09:59:31 Collecting tables
09:59:31 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB)
09:59:31 Collecting numpy>=1.20.0 (from tables)
09:59:31 Using cached numpy-2.4.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB)
09:59:31 Collecting numexpr>=2.6.2 (from tables)
09:59:31 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
09:59:31 Collecting packaging (from tables)
09:59:31 Using cached packaging-26.0-py3-none-any.whl.metadata (3.3 kB)
09:59:31 Collecting py-cpuinfo (from tables)
09:59:31 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
09:59:32 Collecting blosc2>=2.3.0 (from tables)
09:59:32 Using cached blosc2-4.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (7.6 kB)
09:59:32 Collecting typing-extensions>=4.4.0 (from tables)
09:59:32 Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB)
09:59:32 Collecting ndindex (from blosc2>=2.3.0->tables)
09:59:32 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
09:59:32 Collecting msgpack (from blosc2>=2.3.0->tables)
09:59:32 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
09:59:32 Collecting requests (from blosc2>=2.3.0->tables)
09:59:32 Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB)
09:59:32 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.4.4)
09:59:32 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables)
09:59:32 Using cached idna-3.11-py3-none-any.whl.metadata (8.4 kB)
09:59:32 Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables)
09:59:32 Using cached urllib3-2.6.3-py3-none-any.whl.metadata (6.9 kB)
09:59:32 Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables)
09:59:32 Using cached certifi-2026.1.4-py3-none-any.whl.metadata (2.5 kB)
09:59:32 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
09:59:32 Using cached blosc2-4.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (4.7 MB)
09:59:32 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB)
09:59:32 Using cached numpy-2.4.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
09:59:32 Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB)
09:59:32 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (426 kB)
09:59:32 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
09:59:32 Using cached packaging-26.0-py3-none-any.whl (74 kB)
09:59:32 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
09:59:32 Using cached requests-2.32.5-py3-none-any.whl (64 kB)
09:59:32 Using cached idna-3.11-py3-none-any.whl (71 kB)
09:59:32 Using cached urllib3-2.6.3-py3-none-any.whl (131 kB)
09:59:32 Using cached certifi-2026.1.4-py3-none-any.whl (152 kB)
09:59:32 Installing collected packages: py-cpuinfo, urllib3, typing-extensions, packaging, numpy, ndindex, msgpack, idna, certifi, requests, numexpr, blosc2, tables
09:59:35
09:59:35 Successfully installed blosc2-4.0.0 certifi-2026.1.4 idna-3.11 msgpack-1.1.2 ndindex-1.10.1 numexpr-2.14.1 numpy-2.4.2 packaging-26.0 py-cpuinfo-9.0.0 requests-2.32.5 tables-3.10.2 typing-extensions-4.15.0 urllib3-2.6.3
09:59:35 + pip install jinja2
09:59:36 Collecting jinja2
09:59:36 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
09:59:36 Collecting MarkupSafe>=2.0 (from jinja2)
09:59:36 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
09:59:36 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
09:59:36 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
09:59:36 Installing collected packages: MarkupSafe, jinja2
09:59:36
09:59:36 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
09:59:36 + pip install omero-py
09:59:36 Collecting omero-py
09:59:36 Using cached omero_py-5.21.3-py3-none-any.whl.metadata (6.5 kB)
09:59:36 Collecting appdirs (from omero-py)
09:59:36 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
09:59:36 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
09:59:36 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.2)
09:59:36 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.1.0)
09:59:36 Collecting PyYAML (from omero-py)
09:59:36 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
09:59:36 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
09:59:36 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.32.5)
09:59:36 Collecting portalocker (from omero-py)
09:59:36 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
09:59:36 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.4)
09:59:36 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.11)
09:59:36 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2.6.3)
09:59:36 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.1.4)
09:59:36 Using cached omero_py-5.21.3-py3-none-any.whl (2.8 MB)
09:59:36 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
09:59:36 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
09:59:36 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
09:59:37 Installing collected packages: appdirs, PyYAML, portalocker, omero-py
09:59:38
09:59:38 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.21.3 portalocker-3.2.0
09:59:38 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
09:59:39 Collecting omero-metadata
09:59:39 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-18xmkktu/omero-metadata_b39945be807c43fba9ddbdc2193ad88c
09:59:39 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-18xmkktu/omero-metadata_b39945be807c43fba9ddbdc2193ad88c
09:59:40 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 0fe7864b1848b15b9be3ec9eb79b0e73d2380887
09:59:40 Installing build dependencies: started
09:59:40 Installing build dependencies: finished with status 'done'
09:59:40 Getting requirements to build wheel: started
09:59:41 Getting requirements to build wheel: finished with status 'done'
09:59:41 Preparing metadata (pyproject.toml): started
09:59:41 Preparing metadata (pyproject.toml): finished with status 'done'
09:59:41 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.21.3)
09:59:41 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.3)
09:59:41 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6)
09:59:41 Collecting pandas (from omero-metadata)
09:59:41 Using cached pandas-3.0.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (79 kB)
09:59:41 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
09:59:41 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
09:59:41 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.4.2)
09:59:41 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.1.0)
09:59:41 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
09:59:41 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.5)
09:59:41 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0)
09:59:41 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.3)
09:59:41 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
09:59:41 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
09:59:41 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
09:59:41 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.4)
09:59:41 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.11)
09:59:41 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.6.3)
09:59:41 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.1.4)
09:59:41 Using cached pandas-3.0.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (11.2 MB)
09:59:41 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
09:59:41 Building wheels for collected packages: omero-metadata
09:59:41 Building wheel for omero-metadata (pyproject.toml): started
09:59:41 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
09:59:41 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39374 sha256=72ebbc88d352cfa756eb7025d9523be74de8256e91a3339d61b38567b0a29ee1
09:59:41 Stored in directory: /tmp/pip-ephem-wheel-cache-jiwkzrjk/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
09:59:41 Successfully built omero-metadata
09:59:41 Installing collected packages: python-dateutil, pandas, omero-metadata
09:59:46
09:59:46 Successfully installed omero-metadata-0.13.1.dev0 pandas-3.0.0 python-dateutil-2.9.0.post0
09:59:46 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
09:59:46 Collecting omero-cli-render
09:59:46 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-q96b0uxq/omero-cli-render_9fc35ca9a2864a7597346a47b862de95
09:59:46 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-q96b0uxq/omero-cli-render_9fc35ca9a2864a7597346a47b862de95
09:59:49 Running command git checkout -b merge_ci --track origin/merge_ci
09:59:49 Switched to a new branch 'merge_ci'
09:59:49 branch 'merge_ci' set up to track 'origin/merge_ci'.
09:59:49 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 0706a4458122c908b81bdebfaf4182813af8ac1c
09:59:49 Installing build dependencies: started
09:59:50 Installing build dependencies: finished with status 'done'
09:59:50 Getting requirements to build wheel: started
09:59:50 Getting requirements to build wheel: finished with status 'done'
09:59:50 Preparing metadata (pyproject.toml): started
09:59:50 Preparing metadata (pyproject.toml): finished with status 'done'
09:59:50 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3)
09:59:50 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.21.3)
09:59:50 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
09:59:50 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
09:59:50 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.2)
09:59:50 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.1.0)
09:59:50 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
09:59:50 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.5)
09:59:50 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0)
09:59:50 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.4)
09:59:50 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.11)
09:59:50 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.6.3)
09:59:50 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.1.4)
09:59:50 Building wheels for collected packages: omero-cli-render
09:59:50 Building wheel for omero-cli-render (pyproject.toml): started
09:59:50 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
09:59:50 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19838 sha256=12328f41f93d372a50ff52946376e5b8ff5b743b2c174ca00a986bba937c02d7
09:59:50 Stored in directory: /tmp/pip-ephem-wheel-cache-uewikt9q/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
09:59:50 Successfully built omero-cli-render
09:59:50 Installing collected packages: omero-cli-render
09:59:50 Successfully installed omero-cli-render-0.8.2.dev0
09:59:50 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
09:59:51 Collecting omero-cli-duplicate
09:59:51 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-fw685y7h/omero-cli-duplicate_5ebd141bdf58416e8c64a216cb86171a
09:59:51 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-fw685y7h/omero-cli-duplicate_5ebd141bdf58416e8c64a216cb86171a
09:59:52 Running command git checkout -b merge_ci --track origin/merge_ci
09:59:52 Switched to a new branch 'merge_ci'
09:59:52 branch 'merge_ci' set up to track 'origin/merge_ci'.
09:59:52 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 6758e5b3b81875e17f1eefaed185f3afebd240a6
09:59:52 Installing build dependencies: started
09:59:53 Installing build dependencies: finished with status 'done'
09:59:53 Getting requirements to build wheel: started
09:59:53 Getting requirements to build wheel: finished with status 'done'
09:59:53 Preparing metadata (pyproject.toml): started
09:59:53 Preparing metadata (pyproject.toml): finished with status 'done'
09:59:53 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.21.3)
09:59:53 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
09:59:53 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
09:59:53 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.2)
09:59:53 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.1.0)
09:59:53 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3)
09:59:53 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
09:59:53 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.5)
09:59:53 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0)
09:59:53 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.4)
09:59:53 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.11)
09:59:53 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.6.3)
09:59:53 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.1.4)
09:59:53 Building wheels for collected packages: omero-cli-duplicate
09:59:53 Building wheel for omero-cli-duplicate (pyproject.toml): started
09:59:53 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
09:59:53 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11537 sha256=3741184f6191548158d191c51b077352ba56e06c4228ac666f742993236f93fa
09:59:53 Stored in directory: /tmp/pip-ephem-wheel-cache-271hhrp_/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
09:59:53 Successfully built omero-cli-duplicate
09:59:53 Installing collected packages: omero-cli-duplicate
09:59:53 Successfully installed omero-cli-duplicate-0.4.1.dev0
09:59:53 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr
09:59:54 Collecting omero-cli-zarr
09:59:54 Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-6394_8ua/omero-cli-zarr_e1ede320b3744ab69fcb929587e85ff9
09:59:54 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-6394_8ua/omero-cli-zarr_e1ede320b3744ab69fcb929587e85ff9
09:59:55 Running command git checkout -b merge_ci --track origin/merge_ci
09:59:55 Switched to a new branch 'merge_ci'
09:59:55 branch 'merge_ci' set up to track 'origin/merge_ci'.
09:59:55 Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit 63894c1b2e4d56939b909303c9904d9c91509b89
09:59:55 Installing build dependencies: started
09:59:56 Installing build dependencies: finished with status 'done'
09:59:56 Getting requirements to build wheel: started
09:59:56 Getting requirements to build wheel: finished with status 'done'
09:59:56 Installing backend dependencies: started
09:59:57 Installing backend dependencies: finished with status 'done'
09:59:57 Preparing metadata (pyproject.toml): started
09:59:57 Preparing metadata (pyproject.toml): finished with status 'done'
09:59:57 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.21.3)
09:59:57 Collecting ome-zarr<0.12.0,>=0.5.0 (from omero-cli-zarr)
09:59:57 Using cached ome_zarr-0.11.1-py3-none-any.whl.metadata (2.9 kB)
09:59:57 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr) (2.4.2)
09:59:57 Collecting dask (from ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:59:57 Using cached dask-2026.1.2-py3-none-any.whl.metadata (3.8 kB)
09:59:57 Collecting zarr<3,>=2.8.1 (from ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:59:57 Using cached zarr-2.18.7-py3-none-any.whl.metadata (5.8 kB)
09:59:57 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:59:57 Using cached fsspec-2026.1.0-py3-none-any.whl.metadata (10 kB)
09:59:58 Collecting aiohttp<4 (from ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:59:58 Using cached aiohttp-3.13.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
09:59:58 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr) (2.32.5)
09:59:58 Collecting scikit-image (from ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:59:58 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB)
09:59:58 Collecting toolz (from ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:59:58 Using cached toolz-1.1.0-py3-none-any.whl.metadata (5.1 kB)
09:59:58 Collecting aiohappyeyeballs>=2.5.0 (from aiohttp<4->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:59:58 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl.metadata (5.9 kB)
09:59:58 Collecting aiosignal>=1.4.0 (from aiohttp<4->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:59:58 Using cached aiosignal-1.4.0-py3-none-any.whl.metadata (3.7 kB)
09:59:58 Collecting attrs>=17.3.0 (from aiohttp<4->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:59:58 Using cached attrs-25.4.0-py3-none-any.whl.metadata (10 kB)
09:59:58 Collecting frozenlist>=1.1.1 (from aiohttp<4->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:59:58 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (20 kB)
09:59:58 Collecting multidict<7.0,>=4.5 (from aiohttp<4->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:59:58 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (5.3 kB)
09:59:58 Collecting propcache>=0.2.0 (from aiohttp<4->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:59:58 Using cached propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (13 kB)
09:59:59 Collecting yarl<2.0,>=1.17.0 (from aiohttp<4->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:59:59 Using cached yarl-1.22.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (75 kB)
09:59:59 Requirement already satisfied: idna>=2.0 in ./.venv3/lib64/python3.11/site-packages (from yarl<2.0,>=1.17.0->aiohttp<4->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr) (3.11)
09:59:59 Collecting asciitree (from zarr<3,>=2.8.1->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:59:59 Using cached asciitree-0.3.3-py3-none-any.whl
09:59:59 Collecting fasteners (from zarr<3,>=2.8.1->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:59:59 Using cached fasteners-0.20-py3-none-any.whl.metadata (4.8 kB)
09:59:59 Collecting numcodecs!=0.14.0,!=0.14.1,<0.16,>=0.10.0 (from zarr<3,>=2.8.1->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:59:59 Using cached numcodecs-0.15.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.9 kB)
09:59:59 Collecting deprecated (from numcodecs!=0.14.0,!=0.14.1,<0.16,>=0.10.0->zarr<3,>=2.8.1->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:59:59 Using cached deprecated-1.3.1-py2.py3-none-any.whl.metadata (5.9 kB)
09:59:59 Requirement already satisfied: typing-extensions>=4.2 in ./.venv3/lib64/python3.11/site-packages (from aiosignal>=1.4.0->aiohttp<4->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr) (4.15.0)
09:59:59 Collecting s3fs (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:59:59 Using cached s3fs-2026.1.0-py3-none-any.whl.metadata (1.2 kB)
09:59:59 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.4.4)
09:59:59 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.0.0)
09:59:59 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (12.1.0)
09:59:59 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (6.0.3)
09:59:59 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.6.5)
09:59:59 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.2.0)
09:59:59 Collecting click>=8.1 (from dask->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:59:59 Using cached click-8.3.1-py3-none-any.whl.metadata (2.6 kB)
09:59:59 Collecting cloudpickle>=3.0.0 (from dask->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:59:59 Using cached cloudpickle-3.1.2-py3-none-any.whl.metadata (7.1 kB)
09:59:59 Requirement already satisfied: packaging>=20.0 in ./.venv3/lib64/python3.11/site-packages (from dask->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr) (26.0)
09:59:59 Collecting partd>=1.4.0 (from dask->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:59:59 Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB)
09:59:59 Collecting importlib_metadata>=4.13.0 (from dask->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:59:59 Using cached importlib_metadata-8.7.1-py3-none-any.whl.metadata (4.7 kB)
09:59:59 Collecting zipp>=3.20 (from importlib_metadata>=4.13.0->dask->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
09:59:59 Using cached zipp-3.23.0-py3-none-any.whl.metadata (3.6 kB)
10:00:00 Collecting locket (from partd>=1.4.0->dask->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
10:00:00 Using cached locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB)
10:00:01 Collecting wrapt<3,>=1.10 (from deprecated->numcodecs!=0.14.0,!=0.14.1,<0.16,>=0.10.0->zarr<3,>=2.8.1->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
10:00:01 Using cached wrapt-2.1.1-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (7.4 kB)
10:00:01 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr) (3.4.4)
10:00:01 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr) (2.6.3)
10:00:01 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr) (2026.1.4)
10:00:01 Collecting aiobotocore<4.0.0,>=2.5.4 (from s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
10:00:01 Using cached aiobotocore-3.1.1-py3-none-any.whl.metadata (26 kB)
10:00:01 Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<4.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
10:00:01 Using cached aioitertools-0.13.0-py3-none-any.whl.metadata (3.3 kB)
10:00:01 Collecting botocore<1.42.31,>=1.41.0 (from aiobotocore<4.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
10:00:01 Using cached botocore-1.42.30-py3-none-any.whl.metadata (5.9 kB)
10:00:01 Requirement already satisfied: python-dateutil<3.0.0,>=2.1 in ./.venv3/lib64/python3.11/site-packages (from aiobotocore<4.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr) (2.9.0.post0)
10:00:02 Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<4.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
10:00:02 Using cached jmespath-1.1.0-py3-none-any.whl.metadata (7.6 kB)
10:00:02 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil<3.0.0,>=2.1->aiobotocore<4.0.0,>=2.5.4->s3fs->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr) (1.17.0)
10:00:02 Collecting scipy>=1.11.4 (from scikit-image->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
10:00:02 Using cached scipy-1.17.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (62 kB)
10:00:02 Collecting networkx>=3.0 (from scikit-image->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
10:00:02 Using cached networkx-3.6.1-py3-none-any.whl.metadata (6.8 kB)
10:00:02 Collecting imageio!=2.35.0,>=2.33 (from scikit-image->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
10:00:02 Using cached imageio-2.37.2-py3-none-any.whl.metadata (9.7 kB)
10:00:02 Collecting tifffile>=2022.8.12 (from scikit-image->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
10:00:02 Using cached tifffile-2026.1.28-py3-none-any.whl.metadata (30 kB)
10:00:02 Collecting lazy-loader>=0.4 (from scikit-image->ome-zarr<0.12.0,>=0.5.0->omero-cli-zarr)
10:00:02 Using cached lazy_loader-0.4-py3-none-any.whl.metadata (7.6 kB)
10:00:02 Using cached ome_zarr-0.11.1-py3-none-any.whl (40 kB)
10:00:02 Using cached aiohttp-3.13.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.7 MB)
10:00:02 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (246 kB)
10:00:02 Using cached yarl-1.22.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (365 kB)
10:00:02 Using cached zarr-2.18.7-py3-none-any.whl (211 kB)
10:00:02 Using cached numcodecs-0.15.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (8.9 MB)
10:00:02 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl (15 kB)
10:00:02 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB)
10:00:02 Using cached attrs-25.4.0-py3-none-any.whl (67 kB)
10:00:02 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB)
10:00:02 Using cached fsspec-2026.1.0-py3-none-any.whl (201 kB)
10:00:02 Using cached propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (210 kB)
10:00:02 Using cached dask-2026.1.2-py3-none-any.whl (1.5 MB)
10:00:02 Using cached click-8.3.1-py3-none-any.whl (108 kB)
10:00:02 Using cached cloudpickle-3.1.2-py3-none-any.whl (22 kB)
10:00:02 Using cached importlib_metadata-8.7.1-py3-none-any.whl (27 kB)
10:00:02 Using cached partd-1.4.2-py3-none-any.whl (18 kB)
10:00:02 Using cached toolz-1.1.0-py3-none-any.whl (58 kB)
10:00:02 Using cached zipp-3.23.0-py3-none-any.whl (10 kB)
10:00:02 Using cached deprecated-1.3.1-py2.py3-none-any.whl (11 kB)
10:00:02 Using cached wrapt-2.1.1-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (113 kB)
10:00:02 Using cached fasteners-0.20-py3-none-any.whl (18 kB)
10:00:02 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB)
10:00:02 Using cached s3fs-2026.1.0-py3-none-any.whl (30 kB)
10:00:02 Using cached aiobotocore-3.1.1-py3-none-any.whl (87 kB)
10:00:02 Using cached aioitertools-0.13.0-py3-none-any.whl (24 kB)
10:00:02 Using cached botocore-1.42.30-py3-none-any.whl (14.6 MB)
10:00:02 Using cached jmespath-1.1.0-py3-none-any.whl (20 kB)
10:00:02 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB)
10:00:02 Using cached imageio-2.37.2-py3-none-any.whl (317 kB)
10:00:02 Using cached lazy_loader-0.4-py3-none-any.whl (12 kB)
10:00:02 Using cached networkx-3.6.1-py3-none-any.whl (2.1 MB)
10:00:02 Using cached scipy-1.17.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.1 MB)
10:00:02 Using cached tifffile-2026.1.28-py3-none-any.whl (233 kB)
10:00:02 Building wheels for collected packages: omero-cli-zarr
10:00:02 Building wheel for omero-cli-zarr (pyproject.toml): started
10:00:02 Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done'
10:00:02 Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev132+g63894c1-py3-none-any.whl size=43136 sha256=bf05724ee48221728f085014eaf4f7cec3c67ed2af954f33764f7e7c9aba7b10
10:00:02 Stored in directory: /tmp/pip-ephem-wheel-cache-r8mkpssj/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529
10:00:02 Successfully built omero-cli-zarr
10:00:03 Installing collected packages: asciitree, zipp, wrapt, toolz, tifffile, scipy, propcache, networkx, multidict, locket, lazy-loader, jmespath, imageio, fsspec, frozenlist, fasteners, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, yarl, scikit-image, partd, importlib_metadata, deprecated, botocore, aiosignal, numcodecs, dask, aiohttp, zarr, aiobotocore, s3fs, ome-zarr, omero-cli-zarr
10:00:12
10:00:12 Successfully installed aiobotocore-3.1.1 aiohappyeyeballs-2.6.1 aiohttp-3.13.3 aioitertools-0.13.0 aiosignal-1.4.0 asciitree-0.3.3 attrs-25.4.0 botocore-1.42.30 click-8.3.1 cloudpickle-3.1.2 dask-2026.1.2 deprecated-1.3.1 fasteners-0.20 frozenlist-1.8.0 fsspec-2026.1.0 imageio-2.37.2 importlib_metadata-8.7.1 jmespath-1.1.0 lazy-loader-0.4 locket-1.0.0 multidict-6.7.1 networkx-3.6.1 numcodecs-0.15.1 ome-zarr-0.11.1 omero-cli-zarr-0.5.5.dev132+g63894c1 partd-1.4.2 propcache-0.4.1 s3fs-2026.1.0 scikit-image-0.26.0 scipy-1.17.0 tifffile-2026.1.28 toolz-1.1.0 wrapt-2.1.1 yarl-1.22.0 zarr-2.18.7 zipp-3.23.0
10:00:12 + pip install omero-certificates
10:00:13 Collecting omero-certificates
10:00:13 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
10:00:13 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.21.3)
10:00:13 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
10:00:13 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
10:00:13 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.2)
10:00:13 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.1.0)
10:00:13 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3)
10:00:13 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
10:00:13 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.5)
10:00:13 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0)
10:00:13 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.4)
10:00:13 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.11)
10:00:13 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.6.3)
10:00:13 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.1.4)
10:00:13 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
10:00:13 Installing collected packages: omero-certificates
10:00:13 Successfully installed omero-certificates-0.4.0
10:00:13 + for x in *.tar.gz
10:00:13 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
10:00:13 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
10:00:13 Installing build dependencies: started
10:00:14 Installing build dependencies: finished with status 'done'
10:00:14 Getting requirements to build wheel: started
10:00:14 Getting requirements to build wheel: finished with status 'done'
10:00:14 Preparing metadata (pyproject.toml): started
10:00:15 Preparing metadata (pyproject.toml): finished with status 'done'
10:00:15 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.21.3)
10:00:15 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
10:00:15 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
10:00:15 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.2)
10:00:15 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.1.0)
10:00:15 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3)
10:00:15 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
10:00:15 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.5)
10:00:15 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0)
10:00:15 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.4)
10:00:15 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.11)
10:00:15 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.6.3)
10:00:15 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.1.4)
10:00:15 Building wheels for collected packages: omero-dropbox
10:00:15 Building wheel for omero-dropbox (pyproject.toml): started
10:00:15 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
10:00:15 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49138 sha256=a19eead2a39a37aa43785f9a3298aadf5e453f8358faf7e5d4529affde04d09f
10:00:15 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
10:00:15 Successfully built omero-dropbox
10:00:15 Installing collected packages: omero-dropbox
10:00:15 Successfully installed omero-dropbox-5.7.1.dev0
10:00:15 + for x in *.tar.gz
10:00:15 + pip install -U omero_marshal-0.9.2.dev0.tar.gz
10:00:15 Processing ./omero_marshal-0.9.2.dev0.tar.gz
10:00:15 Installing build dependencies: started
10:00:16 Installing build dependencies: finished with status 'done'
10:00:16 Getting requirements to build wheel: started
10:00:17 Getting requirements to build wheel: finished with status 'done'
10:00:17 Preparing metadata (pyproject.toml): started
10:00:17 Preparing metadata (pyproject.toml): finished with status 'done'
10:00:17 Building wheels for collected packages: omero_marshal
10:00:17 Building wheel for omero_marshal (pyproject.toml): started
10:00:17 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
10:00:17 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88132 sha256=f9ab1eb87fc50993e8f6e4dabd78d8cacea39319e1410da524cfd031a6f2b8c8
10:00:17 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230
10:00:17 Successfully built omero_marshal
10:00:17 Installing collected packages: omero_marshal
10:00:17 Successfully installed omero_marshal-0.9.2.dev0
10:00:17 + for x in *.tar.gz
10:00:17 + pip install -U omero_py-5.22.0.dev0.tar.gz
10:00:18 Processing ./omero_py-5.22.0.dev0.tar.gz
10:00:18 Installing build dependencies: started
10:00:19 Installing build dependencies: finished with status 'done'
10:00:19 Getting requirements to build wheel: started
10:00:19 Getting requirements to build wheel: finished with status 'done'
10:00:19 Preparing metadata (pyproject.toml): started
10:00:19 Preparing metadata (pyproject.toml): finished with status 'done'
10:00:19 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.4.4)
10:00:19 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.0.0)
10:00:19 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.4.2)
10:00:19 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (12.1.0)
10:00:19 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (6.0.3)
10:00:19 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.6.5)
10:00:19 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.32.5)
10:00:19 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.2.0)
10:00:19 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.4.4)
10:00:19 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.11)
10:00:19 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2.6.3)
10:00:19 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2026.1.4)
10:00:19 Building wheels for collected packages: omero-py
10:00:19 Building wheel for omero-py (pyproject.toml): started
10:00:20 Building wheel for omero-py (pyproject.toml): finished with status 'done'
10:00:20 Created wheel for omero-py: filename=omero_py-5.22.0.dev0-py3-none-any.whl size=2786540 sha256=f55493d5405c6e2c5454b47ce08b7945165ad3706edaa9577ba1240982ffaf05
10:00:20 Stored in directory: /home/omero/.cache/pip/wheels/b2/dd/fb/0f3c8a08eddbfe6a2bff7fe7d61ee876973c474d282bc441e3
10:00:20 Successfully built omero-py
10:00:20 Installing collected packages: omero-py
10:00:20 Attempting uninstall: omero-py
10:00:20 Found existing installation: omero-py 5.21.3
10:00:20 Uninstalling omero-py-5.21.3:
10:00:21 Successfully uninstalled omero-py-5.21.3
10:00:22 Successfully installed omero-py-5.22.0.dev0
10:00:23 + for x in *.tar.gz
10:00:23 + pip install -U omero_scripts-5.10.1.dev0.tar.gz
10:00:23 Processing ./omero_scripts-5.10.1.dev0.tar.gz
10:00:23 Installing build dependencies: started
10:00:24 Installing build dependencies: finished with status 'done'
10:00:24 Getting requirements to build wheel: started
10:00:24 Getting requirements to build wheel: finished with status 'done'
10:00:24 Preparing metadata (pyproject.toml): started
10:00:24 Preparing metadata (pyproject.toml): finished with status 'done'
10:00:24 Building wheels for collected packages: omero-scripts
10:00:24 Building wheel for omero-scripts (pyproject.toml): started
10:00:24 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
10:00:24 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=137001 sha256=dac0d7fcbf17526783e590f6a0fc4c32ed1eae5121a179c2aec0ad2ec79ba9ff
10:00:24 Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e
10:00:24 Successfully built omero-scripts
10:00:25 Installing collected packages: omero-scripts
10:00:25 Successfully installed omero-scripts-5.10.1.dev0
10:00:25 + for x in *.tar.gz
10:00:25 + pip install -U omero_web-5.30.2.dev0.tar.gz
10:00:25 Processing ./omero_web-5.30.2.dev0.tar.gz
10:00:25 Installing build dependencies: started
10:00:26 Installing build dependencies: finished with status 'done'
10:00:26 Getting requirements to build wheel: started
10:00:26 Getting requirements to build wheel: finished with status 'done'
10:00:26 Preparing metadata (pyproject.toml): started
10:00:27 Preparing metadata (pyproject.toml): finished with status 'done'
10:00:27 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (5.22.0.dev0)
10:00:27 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.30.2.dev0)
10:00:27 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl.metadata (23 kB)
10:00:27 Collecting Django<5.3,>=5.2.9 (from omero-web==5.30.2.dev0)
10:00:27 Using cached django-5.2.11-py3-none-any.whl.metadata (4.1 kB)
10:00:27 Collecting django-pipeline (from omero-web==5.30.2.dev0)
10:00:27 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
10:00:27 Collecting django-cors-headers==3.7.0 (from omero-web==5.30.2.dev0)
10:00:27 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
10:00:27 Collecting whitenoise>=5.3.0 (from omero-web==5.30.2.dev0)
10:00:27 Using cached whitenoise-6.11.0-py3-none-any.whl.metadata (3.7 kB)
10:00:27 Collecting gunicorn>=19.3 (from omero-web==5.30.2.dev0)
10:00:27 Using cached gunicorn-25.0.1-py3-none-any.whl.metadata (4.7 kB)
10:00:27 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (0.9.2.dev0)
10:00:27 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (12.1.0)
10:00:27 Collecting pytz (from omero-web==5.30.2.dev0)
10:00:27 Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB)
10:00:27 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (3.2.0)
10:00:27 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (26.0)
10:00:27 Collecting importlib-resources (from omero-web==5.30.2.dev0)
10:00:27 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
10:00:27 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.30.2.dev0)
10:00:27 Using cached asgiref-3.11.1-py3-none-any.whl.metadata (9.3 kB)
10:00:27 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.30.2.dev0)
10:00:27 Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB)
10:00:27 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (1.4.4)
10:00:27 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (1.0.0)
10:00:27 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.4.2)
10:00:27 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (6.0.3)
10:00:27 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.6.5)
10:00:27 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.32.5)
10:00:27 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web==5.30.2.dev0) (65.5.1)
10:00:27 Collecting wheel (from django-pipeline->omero-web==5.30.2.dev0)
10:00:27 Using cached wheel-0.46.3-py3-none-any.whl.metadata (2.4 kB)
10:00:27 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.4.4)
10:00:27 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.11)
10:00:27 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.6.3)
10:00:27 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (2026.1.4)
10:00:27 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
10:00:27 Using cached django-5.2.11-py3-none-any.whl (8.3 MB)
10:00:27 Using cached asgiref-3.11.1-py3-none-any.whl (24 kB)
10:00:27 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl (28 kB)
10:00:27 Using cached gunicorn-25.0.1-py3-none-any.whl (169 kB)
10:00:27 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB)
10:00:27 Using cached whitenoise-6.11.0-py3-none-any.whl (20 kB)
10:00:27 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
10:00:27 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
10:00:27 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB)
10:00:27 Using cached wheel-0.46.3-py3-none-any.whl (30 kB)
10:00:27 Building wheels for collected packages: omero-web
10:00:27 Building wheel for omero-web (pyproject.toml): started
10:00:28 Building wheel for omero-web (pyproject.toml): finished with status 'done'
10:00:28 Created wheel for omero-web: filename=omero_web-5.30.2.dev0-py3-none-any.whl size=2819262 sha256=c20847b3a7e7cfc1f99f1928442b004c6e876def4a4b4aa093a4403c3f407299
10:00:28 Stored in directory: /home/omero/.cache/pip/wheels/22/8a/f9/2aa2b64b8351936989ad8693ee70db658c8360167f1ee574e7
10:00:28 Successfully built omero-web
10:00:28 Installing collected packages: pytz, whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
10:00:31
10:00:31 Successfully installed Django-5.2.11 asgiref-3.11.1 concurrent-log-handler-0.9.28 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-25.0.1 importlib-resources-6.5.2 omero-web-5.30.2.dev0 pytz-2025.2 sqlparse-0.5.5 wheel-0.46.3 whitenoise-6.11.0
10:00:31 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
10:00:31 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
10:00:31 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
10:00:31 --2026-02-04 10:00:31-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
10:00:31 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.108.133, 185.199.110.133, 185.199.109.133, ...
10:00:31 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.108.133|:443... connected.
10:00:32 HTTP request sent, awaiting response... 200 OK
10:00:32 Length: 136943 (134K) [text/plain]
10:00:32 Saving to: ‘Figure_To_Pdf.py’
10:00:32
10:00:32 0K .......... .......... .......... .......... .......... 37% 3.91M 0s
10:00:32 50K .......... .......... .......... .......... .......... 74% 13.4M 0s
10:00:32 100K .......... .......... .......... ... 100% 6.55M=0.02s
10:00:32
10:00:32 2026-02-04 10:00:32 (6.18 MB/s) - ‘Figure_To_Pdf.py’ saved [136943/136943]
10:00:32
10:00:32 + chmod 755 Figure_To_Pdf.py
10:00:32 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
10:00:32 + omero config set omero.db.name OMERO-server
10:00:33 + omero config set omero.db.host pg
10:00:35 + omero config set omero.db.user postgres
10:00:37 + omero config set omero.data.dir /home/omero/omero-server-data
10:00:39 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
10:00:40 + omero config set omero.db.poolsize 25
10:00:42 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
10:00:44 + omero config set omero.security.trustStorePassword changeit
10:00:45 + omero config set omero.mail.config true
10:00:47 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
10:00:49 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
10:00:51 + omero certificates
10:00:52 OpenSSL 3.5.1 1 Jul 2025 (Library: OpenSSL 3.5.1 1 Jul 2025)
10:00:52 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
10:00:52 + '[' false = true ']'
10:00:52 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
10:00:52 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
10:00:52 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
10:00:53 2026-02-04 10:00:53,010 [ omego.db] DEBUG dbcommand => upgrade
10:00:53 2026-02-04 10:00:53,010 [ omego.db] DEBUG dbhost => localhost
10:00:53 2026-02-04 10:00:53,010 [ omego.db] DEBUG dbname => OMERO-server
10:00:53 2026-02-04 10:00:53,010 [ omego.db] DEBUG dbpass => omero
10:00:53 2026-02-04 10:00:53,010 [ omego.db] DEBUG dbuser => omero
10:00:53 2026-02-04 10:00:53,010 [ omego.db] DEBUG rootpass => omero
10:00:53 2026-02-04 10:00:53,011 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
10:00:53 2026-02-04 10:00:53,011 [omego.extern] INFO Executing : omero version
10:00:54 OMERO.py version:
10:00:54 OMERO.server version:
10:00:54 5.6.3-588-be163bcc16-ice36-b43
10:00:54 5.22.0.dev0
10:00:54 2026-02-04 10:00:54,827 [omego.extern] INFO Completed [1.816 s]
10:00:54 2026-02-04 10:00:54,827 [omego.extern] DEBUG Using omero CLI from omero
10:00:54 2026-02-04 10:00:54,827 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
10:00:54 2026-02-04 10:00:54,827 [omego.extern] INFO Running [current environment]: omero config get --show-password
10:00:54 2026-02-04 10:00:54,827 [omego.extern] INFO Executing : omero config get --show-password
10:00:56 2026-02-04 10:00:56,538 [omego.extern] INFO Completed [1.711 s]
10:00:56 2026-02-04 10:00:56,538 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
10:00:56 2026-02-04 10:00:56,538 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
10:00:56 2026-02-04 10:00:56,544 [omego.extern] INFO Completed [0.006 s]
10:00:56 2026-02-04 10:00:56,544 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.11\n'
10:00:56 2026-02-04 10:00:56,544 [ omego.db] INFO psql version: psql (PostgreSQL) 16.11
10:00:56
10:00:56 2026-02-04 10:00:56,544 [omego.extern] INFO Running [current environment]: omero config get --show-password
10:00:56 2026-02-04 10:00:56,544 [omego.extern] INFO Executing : omero config get --show-password
10:00:58 2026-02-04 10:00:58,312 [omego.extern] INFO Completed [1.767 s]
10:00:58 2026-02-04 10:00:58,312 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
10:00:58 2026-02-04 10:00:58,312 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
10:00:58 2026-02-04 10:00:58,320 [omego.extern] INFO Completed [0.008 s]
10:00:58 2026-02-04 10:00:58,320 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.10") at port "5432".\n'
10:00:58 2026-02-04 10:00:58,320 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
10:00:58 2026-02-04 10:00:58,320 [omego.extern] INFO Running [current environment]: omero config get --show-password
10:00:58 2026-02-04 10:00:58,320 [omego.extern] INFO Executing : omero config get --show-password
10:01:00 2026-02-04 10:01:00,034 [omego.extern] INFO Completed [1.714 s]
10:01:00 2026-02-04 10:01:00,035 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
10:01:00 2026-02-04 10:01:00,035 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
10:01:00 2026-02-04 10:01:00,045 [omego.extern] INFO Completed [0.010 s]
10:01:00 2026-02-04 10:01:00,045 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
10:01:00 2026-02-04 10:01:00,045 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
10:01:00 2026-02-04 10:01:00,046 [ omego.db] INFO Database is already at OMERO5.4__0
10:01:00 + export LANG=en_US.UTF-8
10:01:00 + LANG=en_US.UTF-8
10:01:00 + export LANGUAGE=en_US:en
10:01:00 + LANGUAGE=en_US:en
10:01:00 + export LC_ALL=en_US.UTF-8
10:01:00 + LC_ALL=en_US.UTF-8
10:01:00 + BUILD_ID=DONT_KILL_ME
10:01:00 + omero admin start
10:01:05 No descriptor given. Using etc/grid/default.xml
10:01:14 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
10:01:14 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
10:01:14 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
10:01:14 Waiting on startup. Use CTRL-C to exit
10:01:14 + omero admin waitup
10:01:16 Waiting on startup. Use CTRL-C to exit
10:01:16 + omero admin diagnostics
10:01:22
10:01:22 ================================================================================
10:01:22 OMERO Diagnostics (admin)
10:01:22 ================================================================================
10:01:22
10:01:22 Commands: java -version 17.0.17 (/usr/bin/java)
10:01:22 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
10:01:22 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
10:01:22 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
10:01:22 Commands: psql --version 16.11 (/usr/bin/psql)
10:01:22 Commands: openssl version 3.5.11 (/usr/bin/openssl)
10:01:22
10:01:22 Component: OMERO.py 5.22.0.dev0
10:01:22 Component: OMERO.server 5.6.3-588-be163bcc16-ice36-b43
10:01:22
10:01:22 Server: icegridnode running
10:01:22 Server: Blitz-0 active (pid = 15367, enabled)
10:01:22 Server: Indexer-0 active (pid = 15396, enabled)
10:01:22 Server: OMERO.Glacier2 active (pid = 15434, enabled)
10:01:22 Server: OMERO.IceStorm active (pid = 15400, enabled)
10:01:22 Server: Processor-0 active (pid = 15416, enabled)
10:01:22 Server: Tables-0 active (pid = 15435, enabled)
10:01:22
10:01:22 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
10:01:22 Log files: Blitz-0.log 36.0 KB errors=0 warnings=5
10:01:22 Log files: DropBox.log n/a
10:01:22 Log files: FileServer.log n/a
10:01:22 Log files: Indexer-0.log 2.6 KB
10:01:22 Log files: MonitorServer.log n/a
10:01:22 Log files: Processor-0.log 735 B
10:01:22 Log files: Tables-0.log 961 B
10:01:22 Log files: TestDropBox.log n/a
10:01:22 Log files: master.err empty
10:01:22 Log files: master.out 30.1 KB
10:01:22 Log files: Total size 0.07 MB
10:01:22
10:01:22
10:01:22 Environment:OMERO_HOME=(unset)
10:01:22 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
10:01:22 Environment:OMERO_NODE=(unset)
10:01:22 Environment:OMERO_MASTER=(unset)
10:01:22 Environment:OMERO_USERDIR=(unset)
10:01:22 Environment:OMERO_TMPDIR=(unset)
10:01:22 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:01:22 Environment:PYTHONPATH=(unset)
10:01:22 Environment:ICE_HOME=/opt/ice-3.6.5
10:01:22 Environment:LD_LIBRARY_PATH=(unset)
10:01:22 Environment:DYLD_LIBRARY_PATH=(unset)
10:01:22
10:01:22 OMERO SSL port:4064
10:01:22 OMERO TCP port:4063
10:01:22 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
10:01:22 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
10:01:22
10:01:22 JVM settings: Blitz-${index} -Xmx7200m
10:01:22 JVM settings: Indexer-${index} -Xmx4800m
10:01:22 JVM settings: PixelData-${index} -Xmx7200m
10:01:22 JVM settings: Repository-${index} -Xmx4800m
10:01:22
10:01:22 Jar: lib/server/formats-api.jar Bio-Formats API 8.5.0-SNAPSHOT 4 February 2026 c5f60666c458610e958231e217f711f872880bc6
10:01:22 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.5.0-SNAPSHOT 4 February 2026 c5f60666c458610e958231e217f711f872880bc6
10:01:22 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.5.0-SNAPSHOT 4 February 2026 c5f60666c458610e958231e217f711f872880bc6
10:01:22 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3-SNAPSHOT 4 February 2026 6ce9e62e64035db3a914409e253665e64757f3a4
10:01:22 Jar: lib/server/ome-common.jar OME Common Java 6.1.3-SNAPSHOT 4 February 2026 6ce9e62e64035db3a914409e253665e64757f3a4
10:01:22 Jar: lib/server/ome-jai.jar OME JAI 0.1.6-SNAPSHOT 4 February 2026 6ce9e62e64035db3a914409e253665e64757f3a4
10:01:22 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.5-SNAPSHOT 4 February 2026 6ce9e62e64035db3a914409e253665e64757f3a4
10:01:22 Jar: lib/server/ome-poi.jar OME POI 5.3.11-SNAPSHOT 4 February 2026 6ce9e62e64035db3a914409e253665e64757f3a4
10:01:22 Jar: lib/server/ome-xml.jar OME XML library 6.5.4-SNAPSHOT 4 February 2026 6ce9e62e64035db3a914409e253665e64757f3a4
10:01:22 Jar: lib/server/omero-blitz.jar jar 5.8.4-SNAPSHOT
10:01:22 Jar: lib/server/omero-common.jar jar 5.7.4-SNAPSHOT
10:01:22 Jar: lib/server/omero-gateway.jar jar 5.10.5-SNAPSHOT
10:01:22 Jar: lib/server/omero-model.jar jar 5.7.4-SNAPSHOT
10:01:22 Jar: lib/server/omero-renderer.jar jar 5.6.4-SNAPSHOT
10:01:22 Jar: lib/server/omero-romio.jar jar 5.8.4-SNAPSHOT
10:01:22 Jar: lib/server/omero-server.jar jar 5.7.4-SNAPSHOT
10:01:22 Jar: lib/server/omero-zarr-pixel-buffer-0.6.2-SNAPSHOT.jar OMERO Zarr Pixel Buffer 0.6.2-SNAPSHOT 6883328bed071d63fe0f4ae62e05fe4b3365a38b
10:01:22 + deactivate
10:01:22 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
10:01:22 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:01:22 + export PATH
10:01:22 + unset _OLD_VIRTUAL_PATH
10:01:22 + '[' -n '' ']'
10:01:22 + hash -r
10:01:22 + '[' -n '' ']'
10:01:22 + unset VIRTUAL_ENV
10:01:22 + unset VIRTUAL_ENV_PROMPT
10:01:22 + '[' '!' '' = nondestructive ']'
10:01:22 + unset -f deactivate
10:01:22 Finished: SUCCESS
