00:44:45 Started by upstream project "Trigger" build number 71
00:44:45 originally caused by:
00:44:45 Started by timer
00:44:45 Running as SYSTEM
00:44:45 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
00:44:45 [OMERO-server] $ /bin/bash -xe /tmp/jenkins9951125452225655289.sh
00:44:45 + source /home/settings.env
00:44:45 ++ OMERO_DB_HOST=pg
00:44:45 ++ OMERO_DB_USER=postgres
00:44:45 ++ OMERO_DB_PASS=
00:44:45 ++ OMERO_ROOT_PASS=omero
00:44:45 ++ OMERO_DATA_DIR=/OMERO
00:44:45 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:44:45 + OMERO_DB_NAME=OMERO-server
00:44:45 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:44:45 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:44:45 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:44:45 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:44:45 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
00:44:45 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:44:45 ++ deactivate nondestructive
00:44:45 ++ '[' -n '' ']'
00:44:45 ++ '[' -n '' ']'
00:44:45 ++ hash -r
00:44:45 ++ '[' -n '' ']'
00:44:45 ++ unset VIRTUAL_ENV
00:44:45 ++ unset VIRTUAL_ENV_PROMPT
00:44:45 ++ '[' '!' nondestructive = nondestructive ']'
00:44:45 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:44:45 ++ export VIRTUAL_ENV
00:44:45 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:44:45 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:44:45 ++ export PATH
00:44:45 ++ '[' -n '' ']'
00:44:45 ++ '[' -z '' ']'
00:44:45 ++ _OLD_VIRTUAL_PS1=
00:44:45 ++ PS1='(.venv3) '
00:44:45 ++ export PS1
00:44:45 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:44:45 ++ export VIRTUAL_ENV_PROMPT
00:44:45 ++ hash -r
00:44:45 + omero admin stop
00:44:46 Waiting on shutdown. Use CTRL-C to exit
00:44:46 .+ sleep 5
00:45:02 + deactivate
00:45:02 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:45:02 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:45:02 + export PATH
00:45:02 + unset _OLD_VIRTUAL_PATH
00:45:02 + '[' -n '' ']'
00:45:02 + hash -r
00:45:02 + '[' -n '' ']'
00:45:02 + unset VIRTUAL_ENV
00:45:02 + unset VIRTUAL_ENV_PROMPT
00:45:02 + '[' '!' '' = nondestructive ']'
00:45:02 + unset -f deactivate
00:45:02 + rm -rf /home/omero/workspace/OMERO-server/.venv3
00:45:03 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
00:45:06 + '[' false = true ']'
00:45:06 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
00:45:06 Skipping PURGE_DATA:CleanDbAndRepo
00:45:06 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.5-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.22.0.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.30.2.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
00:45:08 Copied 1 artifact from "OMERO-build" build number 48
00:45:08 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 44
00:45:08 Copied 2 artifacts from "OMERO-build-build" build number 48
00:45:08 Copied 1 artifact from "OMERO-zarr-pixel-buffer-build" build number 42
00:45:08 [OMERO-server] $ /bin/bash -xe /tmp/jenkins14314792318988406879.sh
00:45:08 + source /home/settings.env
00:45:08 ++ OMERO_DB_HOST=pg
00:45:08 ++ OMERO_DB_USER=postgres
00:45:08 ++ OMERO_DB_PASS=
00:45:08 ++ OMERO_ROOT_PASS=omero
00:45:08 ++ OMERO_DATA_DIR=/OMERO
00:45:08 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:45:08 + OMERO_DB_NAME=OMERO-server
00:45:08 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:45:08 + mkdir -p /home/omero/omero-server-data
00:45:08 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:45:08 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:45:08 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:45:08 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:45:08 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:45:08 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:45:08 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:45:08 ++ ls OMERO.server-5.6.3-593-5d52e90076-ice36-b48.zip
00:45:08 + ZIP=OMERO.server-5.6.3-593-5d52e90076-ice36-b48.zip
00:45:08 + '[' '!' -z '' ']'
00:45:08 + DIST=OMERO.server-5.6.3-593-5d52e90076-ice36-b48
00:45:08 + unzip OMERO.server-5.6.3-593-5d52e90076-ice36-b48.zip
00:45:08 Archive: OMERO.server-5.6.3-593-5d52e90076-ice36-b48.zip
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/etc/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/etc/blitz/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/etc/grid/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/etc/profiles/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/etc/templates/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/etc/templates/error/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/etc/templates/grid/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/client/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/scripts/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/scripts/luts/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/scripts/luts/janelia/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/scripts/luts/matplotlib/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/scripts/luts/ncsa_paledit/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/scripts/luts/seaborn/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/scripts/luts/wcif/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/scripts/omero/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/scripts/omero/analysis_scripts/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/scripts/omero/annotation_scripts/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/scripts/omero/export_scripts/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/scripts/omero/figure_scripts/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/scripts/omero/import_scripts/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/scripts/omero/util_scripts/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/server/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/share/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/share/licenses/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/sql/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/sql/misc/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/sql/psql/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/sql/psql/OMERO3A__1/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/sql/psql/OMERO3A__10/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/sql/psql/OMERO3A__11/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/sql/psql/OMERO3A__2/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/sql/psql/OMERO3A__3/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/sql/psql/OMERO3A__4/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/sql/psql/OMERO3A__5/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/sql/psql/OMERO3A__6/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/sql/psql/OMERO3A__7/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/sql/psql/OMERO3A__8/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/sql/psql/OMERO3A__9/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/sql/psql/OMERO3__4/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/sql/psql/OMERO3__5/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/sql/psql/OMERO3__6/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/sql/psql/OMERO3__7/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/sql/psql/OMERO4.1__0/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/sql/psql/OMERO4.2__0/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/sql/psql/OMERO4.2__0/t/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/sql/psql/OMERO4.3__0/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/sql/psql/OMERO4.4__0/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/sql/psql/OMERO4__0/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/sql/psql/OMERO5.0__0/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/sql/psql/OMERO5.1__1/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/sql/psql/OMERO5.2__0/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/sql/psql/OMERO5.3__0/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/sql/psql/OMERO5.4DEV__1/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/sql/psql/OMERO5.4DEV__2/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/sql/psql/OMERO5.4DEV__3/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/sql/psql/OMERO5.4__0/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/var/
00:45:08 creating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/var/tmp/
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/LICENSE.txt
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/etc/backup.cfg
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/etc/blitz/mail-senders.example
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/etc/blitz/mail-server.example
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/etc/build.properties
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/etc/env.bat
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/etc/env.sh
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/etc/hibernate.properties
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/etc/ice.config
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/etc/logback-cli.xml
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/etc/logback-indexing-cli.xml
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/etc/logback-indexing.xml
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/etc/logback.xml
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/etc/mime.types
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/etc/node1.cfg
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/etc/node2.cfg
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/etc/omero.properties
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/etc/profiles/psql
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/etc/rollover.cfg
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/etc/templates/Windows.cfg
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/etc/templates/error/maintainance.html
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/etc/templates/grid/README
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/etc/templates/grid/default.xml
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/etc/templates/grid/templates.xml
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/etc/templates/grid/windefault.xml
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/etc/templates/ice.config
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/etc/templates/internal.cfg
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/etc/templates/master.cfg
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/etc/templates/robot.template
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/etc/testdropbox.config
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/history.rst
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/client/OMEZarrReader.jar
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/client/accessors-smart.jar
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/client/activation.jar
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/client/aggdesigner-algorithm.jar
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/client/aircompressor.jar
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/client/antlr.jar
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/client/aopalliance.jar
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/client/apiguardian-api.jar
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/client/asm.jar
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/client/avatica-core.jar
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/client/avatica-metrics.jar
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/client/aws-java-sdk-core.jar
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/client/aws-java-sdk-kms.jar
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/client/aws-java-sdk-s3.jar
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/client/base.jar
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/client/batik-anim.jar
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/client/batik-awt-util.jar
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/client/batik-bridge.jar
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/client/batik-codec.jar
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/client/batik-constants.jar
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/client/batik-css.jar
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/client/batik-dom.jar
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/client/batik-ext.jar
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/client/batik-gvt.jar
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/client/batik-i18n.jar
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/client/batik-parser.jar
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/client/batik-script.jar
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/client/batik-shared-resources.jar
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/client/batik-svg-dom.jar
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/client/batik-svggen.jar
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/client/batik-transcoder.jar
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/client/batik-util.jar
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/client/batik-xml.jar
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/client/btm.jar
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/client/calcite-core.jar
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/client/calcite-linq4j.jar
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/client/cdm-core.jar
00:45:08 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/lib/client/checker-qual.jar
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00:45:10 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
00:45:10 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
00:45:10 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
00:45:10 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
00:45:10 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
00:45:10 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
00:45:10 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
00:45:10 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
00:45:10 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
00:45:10 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
00:45:10 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
00:45:10 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
00:45:10 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
00:45:10 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/sql/psql/OMERO5.4__0/psql-footer.sql
00:45:10 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/sql/psql/OMERO5.4__0/psql-header.sql
00:45:10 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/sql/psql/OMERO5.4__0/schema.sql
00:45:10 inflating: OMERO.server-5.6.3-593-5d52e90076-ice36-b48/sql/psql/OMERO5.4__0/views.sql
00:45:10 + rm -f OMERO.server-5.6.3-593-5d52e90076-ice36-b48.zip
00:45:10 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-593-5d52e90076-ice36-b48 /home/omero/workspace/OMERO-server/OMERO.server
00:45:10 + rm -rf /home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-core.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-kms.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-annotations.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-core.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-databind.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-classic.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-core.jar
00:45:10 + awsSdkVersion=2.34.6
00:45:10 + jacksonVersion=2.20.0
00:45:10 + logbackVersion=1.3.14
00:45:10 + zarrJavaVersion=0.0.10
00:45:10 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/s3/2.34.6/s3-2.34.6.jar
00:45:10 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:10 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:10 --2026-02-09 00:45:10-- https://repo1.maven.org/maven2/software/amazon/awssdk/s3/2.34.6/s3-2.34.6.jar
00:45:10 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:45:10 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:10 HTTP request sent, awaiting response... 200 OK
00:45:10 Length: 4083366 (3.9M) [application/java-archive]
00:45:10 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3-2.34.6.jar’
00:45:10
00:45:10 0K .......... .......... .......... .......... .......... 1% 32.4M 0s
00:45:10 50K .......... .......... .......... .......... .......... 2% 3.57M 1s
00:45:10 100K .......... .......... .......... .......... .......... 3% 4.10M 1s
00:45:10 150K .......... .......... .......... .......... .......... 5% 36.2M 1s
00:45:10 200K .......... .......... .......... .......... .......... 6% 91.3M 0s
00:45:10 250K .......... .......... .......... .......... .......... 7% 208M 0s
00:45:10 300K .......... .......... .......... .......... .......... 8% 323M 0s
00:45:10 350K .......... .......... .......... .......... .......... 10% 4.24M 0s
00:45:10 400K .......... .......... .......... .......... .......... 11% 27.8M 0s
00:45:10 450K .......... .......... .......... .......... .......... 12% 179M 0s
00:45:10 500K .......... .......... .......... .......... .......... 13% 327M 0s
00:45:10 550K .......... .......... .......... .......... .......... 15% 30.9M 0s
00:45:10 600K .......... .......... .......... .......... .......... 16% 4.91M 0s
00:45:10 650K .......... .......... .......... .......... .......... 17% 22.9M 0s
00:45:10 700K .......... .......... .......... .......... .......... 18% 129M 0s
00:45:10 750K .......... .......... .......... .......... .......... 20% 85.6M 0s
00:45:10 800K .......... .......... .......... .......... .......... 21% 57.2M 0s
00:45:10 850K .......... .......... .......... .......... .......... 22% 4.97M 0s
00:45:10 900K .......... .......... .......... .......... .......... 23% 24.0M 0s
00:45:10 950K .......... .......... .......... .......... .......... 25% 49.5M 0s
00:45:10 1000K .......... .......... .......... .......... .......... 26% 247M 0s
00:45:10 1050K .......... .......... .......... .......... .......... 27% 60.6M 0s
00:45:10 1100K .......... .......... .......... .......... .......... 28% 292M 0s
00:45:10 1150K .......... .......... .......... .......... .......... 30% 4.19M 0s
00:45:11 1200K .......... .......... .......... .......... .......... 31% 212M 0s
00:45:11 1250K .......... .......... .......... .......... .......... 32% 40.2M 0s
00:45:11 1300K .......... .......... .......... .......... .......... 33% 54.9M 0s
00:45:11 1350K .......... .......... .......... .......... .......... 35% 267M 0s
00:45:11 1400K .......... .......... .......... .......... .......... 36% 4.33M 0s
00:45:11 1450K .......... .......... .......... .......... .......... 37% 20.6M 0s
00:45:11 1500K .......... .......... .......... .......... .......... 38% 18.7M 0s
00:45:11 1550K .......... .......... .......... .......... .......... 40% 24.6M 0s
00:45:11 1600K .......... .......... .......... .......... .......... 41% 16.8M 0s
00:45:11 1650K .......... .......... .......... .......... .......... 42% 13.0M 0s
00:45:11 1700K .......... .......... .......... .......... .......... 43% 15.6M 0s
00:45:11 1750K .......... .......... .......... .......... .......... 45% 41.0M 0s
00:45:11 1800K .......... .......... .......... .......... .......... 46% 14.1M 0s
00:45:11 1850K .......... .......... .......... .......... .......... 47% 23.3M 0s
00:45:11 1900K .......... .......... .......... .......... .......... 48% 19.8M 0s
00:45:11 1950K .......... .......... .......... .......... .......... 50% 16.2M 0s
00:45:11 2000K .......... .......... .......... .......... .......... 51% 18.2M 0s
00:45:11 2050K .......... .......... .......... .......... .......... 52% 14.0M 0s
00:45:11 2100K .......... .......... .......... .......... .......... 53% 21.0M 0s
00:45:11 2150K .......... .......... .......... .......... .......... 55% 13.4M 0s
00:45:11 2200K .......... .......... .......... .......... .......... 56% 32.4M 0s
00:45:11 2250K .......... .......... .......... .......... .......... 57% 18.3M 0s
00:45:11 2300K .......... .......... .......... .......... .......... 58% 13.7M 0s
00:45:11 2350K .......... .......... .......... .......... .......... 60% 15.8M 0s
00:45:11 2400K .......... .......... .......... .......... .......... 61% 19.4M 0s
00:45:11 2450K .......... .......... .......... .......... .......... 62% 51.3M 0s
00:45:11 2500K .......... .......... .......... .......... .......... 63% 17.4M 0s
00:45:11 2550K .......... .......... .......... .......... .......... 65% 11.5M 0s
00:45:11 2600K .......... .......... .......... .......... .......... 66% 15.8M 0s
00:45:11 2650K .......... .......... .......... .......... .......... 67% 14.5M 0s
00:45:11 2700K .......... .......... .......... .......... .......... 68% 21.4M 0s
00:45:11 2750K .......... .......... .......... .......... .......... 70% 75.0M 0s
00:45:11 2800K .......... .......... .......... .......... .......... 71% 11.5M 0s
00:45:11 2850K .......... .......... .......... .......... .......... 72% 42.6M 0s
00:45:11 2900K .......... .......... .......... .......... .......... 73% 14.4M 0s
00:45:11 2950K .......... .......... .......... .......... .......... 75% 10.4M 0s
00:45:11 3000K .......... .......... .......... .......... .......... 76% 30.7M 0s
00:45:11 3050K .......... .......... .......... .......... .......... 77% 17.1M 0s
00:45:11 3100K .......... .......... .......... .......... .......... 78% 41.7M 0s
00:45:11 3150K .......... .......... .......... .......... .......... 80% 14.2M 0s
00:45:11 3200K .......... .......... .......... .......... .......... 81% 22.1M 0s
00:45:11 3250K .......... .......... .......... .......... .......... 82% 12.7M 0s
00:45:11 3300K .......... .......... .......... .......... .......... 84% 29.8M 0s
00:45:11 3350K .......... .......... .......... .......... .......... 85% 19.2M 0s
00:45:11 3400K .......... .......... .......... .......... .......... 86% 14.1M 0s
00:45:11 3450K .......... .......... .......... .......... .......... 87% 21.9M 0s
00:45:11 3500K .......... .......... .......... .......... .......... 89% 12.8M 0s
00:45:11 3550K .......... .......... .......... .......... .......... 90% 24.1M 0s
00:45:11 3600K .......... .......... .......... .......... .......... 91% 22.4M 0s
00:45:11 3650K .......... .......... .......... .......... .......... 92% 14.8M 0s
00:45:11 3700K .......... .......... .......... .......... .......... 94% 17.5M 0s
00:45:11 3750K .......... .......... .......... .......... .......... 95% 14.1M 0s
00:45:11 3800K .......... .......... .......... .......... .......... 96% 25.8M 0s
00:45:11 3850K .......... .......... .......... .......... .......... 97% 20.8M 0s
00:45:11 3900K .......... .......... .......... .......... .......... 99% 15.4M 0s
00:45:11 3950K .......... .......... .......... ....... 100% 16.2M=0.2s
00:45:11
00:45:11 2026-02-09 00:45:11 (16.5 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3-2.34.6.jar’ saved [4083366/4083366]
00:45:11
00:45:11 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/auth/2.34.6/auth-2.34.6.jar
00:45:11 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:11 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:11 --2026-02-09 00:45:11-- https://repo1.maven.org/maven2/software/amazon/awssdk/auth/2.34.6/auth-2.34.6.jar
00:45:11 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:45:11 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:11 HTTP request sent, awaiting response... 200 OK
00:45:11 Length: 234962 (229K) [application/java-archive]
00:45:11 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/auth-2.34.6.jar’
00:45:11
00:45:11 0K .......... .......... .......... .......... .......... 21% 34.3M 0s
00:45:11 50K .......... .......... .......... .......... .......... 43% 3.57M 0s
00:45:11 100K .......... .......... .......... .......... .......... 65% 3.97M 0s
00:45:11 150K .......... .......... .......... .......... .......... 87% 35.2M 0s
00:45:11 200K .......... .......... ......... 100% 246M=0.03s
00:45:11
00:45:11 2026-02-09 00:45:11 (7.75 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/auth-2.34.6.jar’ saved [234962/234962]
00:45:11
00:45:11 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/aws-core/2.34.6/aws-core-2.34.6.jar
00:45:11 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:11 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:11 --2026-02-09 00:45:11-- https://repo1.maven.org/maven2/software/amazon/awssdk/aws-core/2.34.6/aws-core-2.34.6.jar
00:45:11 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:45:11 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:11 HTTP request sent, awaiting response... 200 OK
00:45:11 Length: 192161 (188K) [application/java-archive]
00:45:11 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-core-2.34.6.jar’
00:45:11
00:45:11 0K .......... .......... .......... .......... .......... 26% 3.28M 0s
00:45:11 50K .......... .......... .......... .......... .......... 53% 8.93M 0s
00:45:11 100K .......... .......... .......... .......... .......... 79% 4.62M 0s
00:45:11 150K .......... .......... .......... ....... 100% 12.8M=0.03s
00:45:11
00:45:11 2026-02-09 00:45:11 (5.42 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-core-2.34.6.jar’ saved [192161/192161]
00:45:11
00:45:11 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/sdk-core/2.34.6/sdk-core-2.34.6.jar
00:45:11 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:11 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:11 --2026-02-09 00:45:11-- https://repo1.maven.org/maven2/software/amazon/awssdk/sdk-core/2.34.6/sdk-core-2.34.6.jar
00:45:11 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:45:11 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:11 HTTP request sent, awaiting response... 200 OK
00:45:11 Length: 1037104 (1013K) [application/java-archive]
00:45:11 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/sdk-core-2.34.6.jar’
00:45:11
00:45:11 0K .......... .......... .......... .......... .......... 4% 31.8M 0s
00:45:11 50K .......... .......... .......... .......... .......... 9% 3.59M 0s
00:45:12 100K .......... .......... .......... .......... .......... 14% 3.95M 0s
00:45:12 150K .......... .......... .......... .......... .......... 19% 40.9M 0s
00:45:12 200K .......... .......... .......... .......... .......... 24% 137M 0s
00:45:12 250K .......... .......... .......... .......... .......... 29% 46.4M 0s
00:45:12 300K .......... .......... .......... .......... .......... 34% 4.49M 0s
00:45:12 350K .......... .......... .......... .......... .......... 39% 99.2M 0s
00:45:12 400K .......... .......... .......... .......... .......... 44% 44.8M 0s
00:45:12 450K .......... .......... .......... .......... .......... 49% 56.3M 0s
00:45:12 500K .......... .......... .......... .......... .......... 54% 135M 0s
00:45:12 550K .......... .......... .......... .......... .......... 59% 346M 0s
00:45:12 600K .......... .......... .......... .......... .......... 64% 3.97M 0s
00:45:12 650K .......... .......... .......... .......... .......... 69% 64.7M 0s
00:45:12 700K .......... .......... .......... .......... .......... 74% 120M 0s
00:45:12 750K .......... .......... .......... .......... .......... 78% 4.60M 0s
00:45:12 800K .......... .......... .......... .......... .......... 83% 276M 0s
00:45:12 850K .......... .......... .......... .......... .......... 88% 20.6M 0s
00:45:12 900K .......... .......... .......... .......... .......... 93% 123M 0s
00:45:12 950K .......... .......... .......... .......... .......... 98% 93.8M 0s
00:45:12 1000K .......... .. 100% 273M=0.07s
00:45:12
00:45:12 2026-02-09 00:45:12 (13.8 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/sdk-core-2.34.6.jar’ saved [1037104/1037104]
00:45:12
00:45:12 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/url-connection-client/2.34.6/url-connection-client-2.34.6.jar
00:45:12 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:12 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:12 --2026-02-09 00:45:12-- https://repo1.maven.org/maven2/software/amazon/awssdk/url-connection-client/2.34.6/url-connection-client-2.34.6.jar
00:45:12 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:45:12 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:12 HTTP request sent, awaiting response... 200 OK
00:45:12 Length: 33040 (32K) [application/java-archive]
00:45:12 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/url-connection-client-2.34.6.jar’
00:45:12
00:45:12 0K .......... .......... .......... .. 100% 34.0M=0.001s
00:45:12
00:45:12 2026-02-09 00:45:12 (34.0 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/url-connection-client-2.34.6.jar’ saved [33040/33040]
00:45:12
00:45:12 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/annotations/2.34.6/annotations-2.34.6.jar
00:45:12 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:12 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:12 --2026-02-09 00:45:12-- https://repo1.maven.org/maven2/software/amazon/awssdk/annotations/2.34.6/annotations-2.34.6.jar
00:45:12 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:45:12 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:12 HTTP request sent, awaiting response... 200 OK
00:45:12 Length: 13758 (13K) [application/java-archive]
00:45:12 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/annotations-2.34.6.jar’
00:45:12
00:45:12 0K .......... ... 100% 40.0M=0s
00:45:12
00:45:12 2026-02-09 00:45:12 (40.0 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/annotations-2.34.6.jar’ saved [13758/13758]
00:45:12
00:45:12 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/regions/2.34.6/regions-2.34.6.jar
00:45:12 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:12 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:12 --2026-02-09 00:45:12-- https://repo1.maven.org/maven2/software/amazon/awssdk/regions/2.34.6/regions-2.34.6.jar
00:45:12 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:45:12 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:12 HTTP request sent, awaiting response... 200 OK
00:45:12 Length: 962220 (940K) [application/java-archive]
00:45:12 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/regions-2.34.6.jar’
00:45:12
00:45:12 0K .......... .......... .......... .......... .......... 5% 35.8M 0s
00:45:12 50K .......... .......... .......... .......... .......... 10% 3.60M 0s
00:45:12 100K .......... .......... .......... .......... .......... 15% 3.87M 0s
00:45:12 150K .......... .......... .......... .......... .......... 21% 51.1M 0s
00:45:12 200K .......... .......... .......... .......... .......... 26% 88.2M 0s
00:45:12 250K .......... .......... .......... .......... .......... 31% 57.8M 0s
00:45:12 300K .......... .......... .......... .......... .......... 37% 315M 0s
00:45:12 350K .......... .......... .......... .......... .......... 42% 4.03M 0s
00:45:12 400K .......... .......... .......... .......... .......... 47% 113M 0s
00:45:12 450K .......... .......... .......... .......... .......... 53% 303M 0s
00:45:12 500K .......... .......... .......... .......... .......... 58% 57.6M 0s
00:45:12 550K .......... .......... .......... .......... .......... 63% 63.4M 0s
00:45:12 600K .......... .......... .......... .......... .......... 69% 4.20M 0s
00:45:12 650K .......... .......... .......... .......... .......... 74% 104M 0s
00:45:12 700K .......... .......... .......... .......... .......... 79% 335M 0s
00:45:12 750K .......... .......... .......... .......... .......... 85% 57.2M 0s
00:45:12 800K .......... .......... .......... .......... .......... 90% 55.5M 0s
00:45:12 850K .......... .......... .......... .......... .......... 95% 4.27M 0s
00:45:12 900K .......... .......... .......... ......... 100% 243M=0.07s
00:45:12
00:45:12 2026-02-09 00:45:12 (13.1 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/regions-2.34.6.jar’ saved [962220/962220]
00:45:12
00:45:12 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/identity-spi/2.34.6/identity-spi-2.34.6.jar
00:45:12 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:12 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:12 --2026-02-09 00:45:12-- https://repo1.maven.org/maven2/software/amazon/awssdk/identity-spi/2.34.6/identity-spi-2.34.6.jar
00:45:13 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:45:13 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:13 HTTP request sent, awaiting response... 200 OK
00:45:13 Length: 30963 (30K) [application/java-archive]
00:45:13 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/identity-spi-2.34.6.jar’
00:45:13
00:45:13 0K .......... .......... .......... 100% 38.9M=0.001s
00:45:13
00:45:13 2026-02-09 00:45:13 (38.9 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/identity-spi-2.34.6.jar’ saved [30963/30963]
00:45:13
00:45:13 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/utils/2.34.6/utils-2.34.6.jar
00:45:13 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:13 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:13 --2026-02-09 00:45:13-- https://repo1.maven.org/maven2/software/amazon/awssdk/utils/2.34.6/utils-2.34.6.jar
00:45:13 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:45:13 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:13 HTTP request sent, awaiting response... 200 OK
00:45:13 Length: 241618 (236K) [application/java-archive]
00:45:13 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/utils-2.34.6.jar’
00:45:13
00:45:13 0K .......... .......... .......... .......... .......... 21% 3.46M 0s
00:45:13 50K .......... .......... .......... .......... .......... 42% 8.51M 0s
00:45:13 100K .......... .......... .......... .......... .......... 63% 4.65M 0s
00:45:13 150K .......... .......... .......... .......... .......... 84% 11.0M 0s
00:45:13 200K .......... .......... .......... ..... 100% 12.3M=0.04s
00:45:13
00:45:13 2026-02-09 00:45:13 (6.12 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/utils-2.34.6.jar’ saved [241618/241618]
00:45:13
00:45:13 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/http-client-spi/2.34.6/http-client-spi-2.34.6.jar
00:45:13 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:13 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:13 --2026-02-09 00:45:13-- https://repo1.maven.org/maven2/software/amazon/awssdk/http-client-spi/2.34.6/http-client-spi-2.34.6.jar
00:45:13 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:45:13 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:13 HTTP request sent, awaiting response... 200 OK
00:45:13 Length: 91685 (90K) [application/java-archive]
00:45:13 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/http-client-spi-2.34.6.jar’
00:45:13
00:45:13 0K .......... .......... .......... .......... .......... 55% 35.6M 0s
00:45:13 50K .......... .......... .......... ......... 100% 2.84M=0.01s
00:45:13
00:45:13 2026-02-09 00:45:13 (5.84 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/http-client-spi-2.34.6.jar’ saved [91685/91685]
00:45:13
00:45:13 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/retries/2.34.6/retries-2.34.6.jar
00:45:13 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:13 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:13 --2026-02-09 00:45:13-- https://repo1.maven.org/maven2/software/amazon/awssdk/retries/2.34.6/retries-2.34.6.jar
00:45:13 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:45:13 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:14 HTTP request sent, awaiting response... 200 OK
00:45:14 Length: 66309 (65K) [application/java-archive]
00:45:14 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/retries-2.34.6.jar’
00:45:14
00:45:14 0K .......... .......... .......... .......... .......... 77% 3.41M 0s
00:45:14 50K .......... .... 100% 7.70M=0.02s
00:45:14
00:45:14 2026-02-09 00:45:14 (3.91 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/retries-2.34.6.jar’ saved [66309/66309]
00:45:14
00:45:14 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-core/2.20.0/jackson-core-2.20.0.jar
00:45:14 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:14 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:14 --2026-02-09 00:45:14-- https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-core/2.20.0/jackson-core-2.20.0.jar
00:45:14 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:45:14 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:14 HTTP request sent, awaiting response... 200 OK
00:45:14 Length: 593063 (579K) [application/java-archive]
00:45:14 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-core-2.20.0.jar’
00:45:14
00:45:14 0K .......... .......... .......... .......... .......... 8% 33.3M 0s
00:45:14 50K .......... .......... .......... .......... .......... 17% 3.58M 0s
00:45:14 100K .......... .......... .......... .......... .......... 25% 79.8M 0s
00:45:14 150K .......... .......... .......... .......... .......... 34% 3.73M 0s
00:45:14 200K .......... .......... .......... .......... .......... 43% 142M 0s
00:45:14 250K .......... .......... .......... .......... .......... 51% 58.4M 0s
00:45:14 300K .......... .......... .......... .......... .......... 60% 162M 0s
00:45:14 350K .......... .......... .......... .......... .......... 69% 68.7M 0s
00:45:14 400K .......... .......... .......... .......... .......... 77% 4.21M 0s
00:45:14 450K .......... .......... .......... .......... .......... 86% 139M 0s
00:45:14 500K .......... .......... .......... .......... .......... 94% 50.7M 0s
00:45:14 550K .......... .......... ......... 100% 307M=0.04s
00:45:14
00:45:14 2026-02-09 00:45:14 (12.9 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-core-2.20.0.jar’ saved [593063/593063]
00:45:14
00:45:14 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.20.0/jackson-databind-2.20.0.jar
00:45:14 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:14 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:14 --2026-02-09 00:45:14-- https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.20.0/jackson-databind-2.20.0.jar
00:45:14 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:45:14 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:14 HTTP request sent, awaiting response... 200 OK
00:45:14 Length: 1688471 (1.6M) [application/java-archive]
00:45:14 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-databind-2.20.0.jar’
00:45:14
00:45:14 0K .......... .......... .......... .......... .......... 3% 37.7M 0s
00:45:14 50K .......... .......... .......... .......... .......... 6% 3.53M 0s
00:45:14 100K .......... .......... .......... .......... .......... 9% 84.0M 0s
00:45:14 150K .......... .......... .......... .......... .......... 12% 3.78M 0s
00:45:14 200K .......... .......... .......... .......... .......... 15% 193M 0s
00:45:14 250K .......... .......... .......... .......... .......... 18% 52.0M 0s
00:45:14 300K .......... .......... .......... .......... .......... 21% 56.9M 0s
00:45:14 350K .......... .......... .......... .......... .......... 24% 4.81M 0s
00:45:14 400K .......... .......... .......... .......... .......... 27% 21.0M 0s
00:45:14 450K .......... .......... .......... .......... .......... 30% 253M 0s
00:45:14 500K .......... .......... .......... .......... .......... 33% 126M 0s
00:45:14 550K .......... .......... .......... .......... .......... 36% 42.5M 0s
00:45:14 600K .......... .......... .......... .......... .......... 39% 99.2M 0s
00:45:14 650K .......... .......... .......... .......... .......... 42% 4.58M 0s
00:45:14 700K .......... .......... .......... .......... .......... 45% 37.9M 0s
00:45:14 750K .......... .......... .......... .......... .......... 48% 253M 0s
00:45:14 800K .......... .......... .......... .......... .......... 51% 42.3M 0s
00:45:14 850K .......... .......... .......... .......... .......... 54% 98.3M 0s
00:45:14 900K .......... .......... .......... .......... .......... 57% 4.59M 0s
00:45:14 950K .......... .......... .......... .......... .......... 60% 36.2M 0s
00:45:14 1000K .......... .......... .......... .......... .......... 63% 63.5M 0s
00:45:14 1050K .......... .......... .......... .......... .......... 66% 87.1M 0s
00:45:14 1100K .......... .......... .......... .......... .......... 69% 71.3M 0s
00:45:14 1150K .......... .......... .......... .......... .......... 72% 4.74M 0s
00:45:14 1200K .......... .......... .......... .......... .......... 75% 34.4M 0s
00:45:14 1250K .......... .......... .......... .......... .......... 78% 50.9M 0s
00:45:14 1300K .......... .......... .......... .......... .......... 81% 151M 0s
00:45:14 1350K .......... .......... .......... .......... .......... 84% 310M 0s
00:45:14 1400K .......... .......... .......... .......... .......... 87% 4.56M 0s
00:45:14 1450K .......... .......... .......... .......... .......... 90% 18.0M 0s
00:45:14 1500K .......... .......... .......... .......... .......... 94% 13.3M 0s
00:45:14 1550K .......... .......... .......... .......... .......... 97% 25.7M 0s
00:45:14 1600K .......... .......... .......... .......... ........ 100% 23.9M=0.1s
00:45:14
00:45:14 2026-02-09 00:45:14 (15.0 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-databind-2.20.0.jar’ saved [1688471/1688471]
00:45:14
00:45:14 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/datatype/jackson-datatype-jdk8/2.20.0/jackson-datatype-jdk8-2.20.0.jar
00:45:14 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:14 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:14 --2026-02-09 00:45:14-- https://repo1.maven.org/maven2/com/fasterxml/jackson/datatype/jackson-datatype-jdk8/2.20.0/jackson-datatype-jdk8-2.20.0.jar
00:45:14 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:45:14 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:14 HTTP request sent, awaiting response... 200 OK
00:45:15 Length: 36400 (36K) [application/java-archive]
00:45:15 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-datatype-jdk8-2.20.0.jar’
00:45:15
00:45:15 0K .......... .......... .......... ..... 100% 10.9M=0.003s
00:45:15
00:45:15 2026-02-09 00:45:15 (10.9 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-datatype-jdk8-2.20.0.jar’ saved [36400/36400]
00:45:15
00:45:15 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-annotations/2.20/jackson-annotations-2.20.jar
00:45:15 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:15 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:15 --2026-02-09 00:45:15-- https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-annotations/2.20/jackson-annotations-2.20.jar
00:45:15 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:45:15 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:15 HTTP request sent, awaiting response... 200 OK
00:45:15 Length: 79195 (77K) [application/java-archive]
00:45:15 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-annotations-2.20.jar’
00:45:15
00:45:15 0K .......... .......... .......... .......... .......... 64% 34.7M 0s
00:45:15 50K .......... .......... ....... 100% 2.04M=0.01s
00:45:15
00:45:15 2026-02-09 00:45:15 (5.21 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-annotations-2.20.jar’ saved [79195/79195]
00:45:15
00:45:15 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar
00:45:15 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:15 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:15 --2026-02-09 00:45:15-- https://repo.maven.apache.org/maven2/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar
00:45:15 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:45:15 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
00:45:15 HTTP request sent, awaiting response... 200 OK
00:45:15 Length: 277829 (271K) [application/java-archive]
00:45:15 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-classic-1.3.14.jar’
00:45:15
00:45:15 0K .......... .......... .......... .......... .......... 18% 3.52M 0s
00:45:15 50K .......... .......... .......... .......... .......... 36% 7.42M 0s
00:45:15 100K .......... .......... .......... .......... .......... 55% 4.96M 0s
00:45:15 150K .......... .......... .......... .......... .......... 73% 9.01M 0s
00:45:15 200K .......... .......... .......... .......... .......... 92% 12.9M 0s
00:45:15 250K .......... .......... . 100% 9.81M=0.04s
00:45:15
00:45:15 2026-02-09 00:45:15 (6.36 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-classic-1.3.14.jar’ saved [277829/277829]
00:45:15
00:45:15 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar
00:45:15 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:15 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:15 --2026-02-09 00:45:15-- https://repo.maven.apache.org/maven2/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar
00:45:15 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:45:15 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
00:45:15 HTTP request sent, awaiting response... 200 OK
00:45:15 Length: 579673 (566K) [application/java-archive]
00:45:15 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-core-1.3.14.jar’
00:45:15
00:45:15 0K .......... .......... .......... .......... .......... 8% 34.1M 0s
00:45:15 50K .......... .......... .......... .......... .......... 17% 3.58M 0s
00:45:15 100K .......... .......... .......... .......... .......... 26% 3.93M 0s
00:45:15 150K .......... .......... .......... .......... .......... 35% 46.1M 0s
00:45:15 200K .......... .......... .......... .......... .......... 44% 66.2M 0s
00:45:15 250K .......... .......... .......... .......... .......... 52% 4.21M 0s
00:45:15 300K .......... .......... .......... .......... .......... 61% 75.5M 0s
00:45:15 350K .......... .......... .......... .......... .......... 70% 77.8M 0s
00:45:15 400K .......... .......... .......... .......... .......... 79% 283M 0s
00:45:15 450K .......... .......... .......... .......... .......... 88% 47.9M 0s
00:45:15 500K .......... .......... .......... .......... .......... 97% 69.3M 0s
00:45:15 550K .......... ...... 100% 1.41M=0.06s
00:45:15
00:45:15 2026-02-09 00:45:15 (10.0 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-core-1.3.14.jar’ saved [579673/579673]
00:45:15
00:45:15 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/dev/zarr/zarr-java/0.0.10/zarr-java-0.0.10.jar
00:45:15 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:15 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:15 --2026-02-09 00:45:15-- https://repo.maven.apache.org/maven2/dev/zarr/zarr-java/0.0.10/zarr-java-0.0.10.jar
00:45:16 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:45:16 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
00:45:16 HTTP request sent, awaiting response... 200 OK
00:45:16 Length: 175836 (172K) [application/java-archive]
00:45:16 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zarr-java-0.0.10.jar’
00:45:16
00:45:16 0K .......... .......... .......... .......... .......... 29% 38.5M 0s
00:45:16 50K .......... .......... .......... .......... .......... 58% 3.50M 0s
00:45:16 100K .......... .......... .......... .......... .......... 87% 3.66M 0s
00:45:16 150K .......... .......... . 100% 128M=0.03s
00:45:16
00:45:16 2026-02-09 00:45:16 (5.84 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zarr-java-0.0.10.jar’ saved [175836/175836]
00:45:16
00:45:16 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
00:45:16 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:16 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:16 --2026-02-09 00:45:16-- https://repo.maven.apache.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
00:45:16 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:45:16 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
00:45:16 HTTP request sent, awaiting response... 200 OK
00:45:16 Length: 889211 (868K) [application/java-archive]
00:45:16 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’
00:45:16
00:45:16 0K .......... .......... .......... .......... .......... 5% 38.2M 0s
00:45:16 50K .......... .......... .......... .......... .......... 11% 3.58M 0s
00:45:16 100K .......... .......... .......... .......... .......... 17% 3.77M 0s
00:45:16 150K .......... .......... .......... .......... .......... 23% 51.6M 0s
00:45:16 200K .......... .......... .......... .......... .......... 28% 105M 0s
00:45:16 250K .......... .......... .......... .......... .......... 34% 56.2M 0s
00:45:16 300K .......... .......... .......... .......... .......... 40% 290M 0s
00:45:16 350K .......... .......... .......... .......... .......... 46% 4.01M 0s
00:45:16 400K .......... .......... .......... .......... .......... 51% 123M 0s
00:45:16 450K .......... .......... .......... .......... .......... 57% 277M 0s
00:45:16 500K .......... .......... .......... .......... .......... 63% 59.1M 0s
00:45:16 550K .......... .......... .......... .......... .......... 69% 61.2M 0s
00:45:16 600K .......... .......... .......... .......... .......... 74% 4.15M 0s
00:45:16 650K .......... .......... .......... .......... .......... 80% 113M 0s
00:45:16 700K .......... .......... .......... .......... .......... 86% 349M 0s
00:45:16 750K .......... .......... .......... .......... .......... 92% 49.9M 0s
00:45:16 800K .......... .......... .......... .......... .......... 97% 72.3M 0s
00:45:16 850K .......... ........ 100% 278M=0.06s
00:45:16
00:45:16 2026-02-09 00:45:16 (14.4 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’ saved [889211/889211]
00:45:16
00:45:16 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/org/apache/tika/tika-core/1.28.5/tika-core-1.28.5.jar
00:45:16 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:16 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:16 --2026-02-09 00:45:16-- https://repo.maven.apache.org/maven2/org/apache/tika/tika-core/1.28.5/tika-core-1.28.5.jar
00:45:16 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:45:16 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
00:45:16 HTTP request sent, awaiting response... 200 OK
00:45:16 Length: 736051 (719K) [application/java-archive]
00:45:16 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/tika-core-1.28.5.jar’
00:45:16
00:45:16 0K .......... .......... .......... .......... .......... 6% 32.0M 0s
00:45:16 50K .......... .......... .......... .......... .......... 13% 3.60M 0s
00:45:16 100K .......... .......... .......... .......... .......... 20% 3.95M 0s
00:45:16 150K .......... .......... .......... .......... .......... 27% 32.0M 0s
00:45:16 200K .......... .......... .......... .......... .......... 34% 192M 0s
00:45:16 250K .......... .......... .......... .......... .......... 41% 70.9M 0s
00:45:16 300K .......... .......... .......... .......... .......... 48% 19.6M 0s
00:45:16 350K .......... .......... .......... .......... .......... 55% 5.56M 0s
00:45:16 400K .......... .......... .......... .......... .......... 62% 38.5M 0s
00:45:16 450K .......... .......... .......... .......... .......... 69% 48.0M 0s
00:45:16 500K .......... .......... .......... .......... .......... 76% 121M 0s
00:45:16 550K .......... .......... .......... .......... .......... 83% 17.4M 0s
00:45:16 600K .......... .......... .......... .......... .......... 90% 5.89M 0s
00:45:16 650K .......... .......... .......... .......... .......... 97% 33.1M 0s
00:45:16 700K .......... ........ 100% 169M=0.06s
00:45:16
00:45:16 2026-02-09 00:45:16 (12.4 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/tika-core-1.28.5.jar’ saved [736051/736051]
00:45:16
00:45:16 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/squareup/okhttp/okhttp/2.7.5/okhttp-2.7.5.jar
00:45:16 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:16 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:16 --2026-02-09 00:45:16-- https://repo1.maven.org/maven2/com/squareup/okhttp/okhttp/2.7.5/okhttp-2.7.5.jar
00:45:17 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:45:17 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:17 HTTP request sent, awaiting response... 200 OK
00:45:17 Length: 331034 (323K) [application/java-archive]
00:45:17 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/okhttp-2.7.5.jar’
00:45:17
00:45:17 0K .......... .......... .......... .......... .......... 15% 34.1M 0s
00:45:17 50K .......... .......... .......... .......... .......... 30% 3.58M 0s
00:45:17 100K .......... .......... .......... .......... .......... 46% 85.9M 0s
00:45:17 150K .......... .......... .......... .......... .......... 61% 3.77M 0s
00:45:17 200K .......... .......... .......... .......... .......... 77% 310M 0s
00:45:17 250K .......... .......... .......... .......... .......... 92% 77.4M 0s
00:45:17 300K .......... .......... ... 100% 35.6M=0.03s
00:45:17
00:45:17 2026-02-09 00:45:17 (10.5 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/okhttp-2.7.5.jar’ saved [331034/331034]
00:45:17
00:45:17 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/github/luben/zstd-jni/1.5.5-7/zstd-jni-1.5.5-7.jar
00:45:17 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:17 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:17 --2026-02-09 00:45:17-- https://repo1.maven.org/maven2/com/github/luben/zstd-jni/1.5.5-7/zstd-jni-1.5.5-7.jar
00:45:17 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:45:17 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:17 HTTP request sent, awaiting response... 200 OK
00:45:17 Length: 6749842 (6.4M) [application/java-archive]
00:45:17 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zstd-jni-1.5.5-7.jar’
00:45:17
00:45:17 0K .......... .......... .......... .......... .......... 0% 26.9M 0s
00:45:17 50K .......... .......... .......... .......... .......... 1% 3.39M 1s
00:45:17 100K .......... .......... .......... .......... .......... 2% 4.23M 1s
00:45:17 150K .......... .......... .......... .......... .......... 3% 34.9M 1s
00:45:17 200K .......... .......... .......... .......... .......... 3% 40.6M 1s
00:45:17 250K .......... .......... .......... .......... .......... 4% 49.3M 1s
00:45:17 300K .......... .......... .......... .......... .......... 5% 50.9M 1s
00:45:17 350K .......... .......... .......... .......... .......... 6% 5.39M 1s
00:45:17 400K .......... .......... .......... .......... .......... 6% 21.8M 1s
00:45:17 450K .......... .......... .......... .......... .......... 7% 70.7M 1s
00:45:17 500K .......... .......... .......... .......... .......... 8% 53.9M 0s
00:45:17 550K .......... .......... .......... .......... .......... 9% 49.3M 0s
00:45:17 600K .......... .......... .......... .......... .......... 9% 5.55M 1s
00:45:17 650K .......... .......... .......... .......... .......... 10% 21.4M 0s
00:45:17 700K .......... .......... .......... .......... .......... 11% 64.6M 0s
00:45:17 750K .......... .......... .......... .......... .......... 12% 28.3M 0s
00:45:17 800K .......... .......... .......... .......... .......... 12% 45.7M 0s
00:45:17 850K .......... .......... .......... .......... .......... 13% 5.42M 0s
00:45:17 900K .......... .......... .......... .......... .......... 14% 43.7M 0s
00:45:17 950K .......... .......... .......... .......... .......... 15% 53.0M 0s
00:45:17 1000K .......... .......... .......... .......... .......... 15% 27.4M 0s
00:45:17 1050K .......... .......... .......... .......... .......... 16% 57.3M 0s
00:45:17 1100K .......... .......... .......... .......... .......... 17% 5.44M 0s
00:45:17 1150K .......... .......... .......... .......... .......... 18% 42.8M 0s
00:45:17 1200K .......... .......... .......... .......... .......... 18% 43.1M 0s
00:45:17 1250K .......... .......... .......... .......... .......... 19% 30.4M 0s
00:45:17 1300K .......... .......... .......... .......... .......... 20% 5.85M 0s
00:45:17 1350K .......... .......... .......... .......... .......... 21% 21.6M 0s
00:45:17 1400K .......... .......... .......... .......... .......... 21% 17.9M 0s
00:45:17 1450K .......... .......... .......... .......... .......... 22% 24.5M 0s
00:45:17 1500K .......... .......... .......... .......... .......... 23% 17.5M 0s
00:45:17 1550K .......... .......... .......... .......... .......... 24% 17.2M 0s
00:45:17 1600K .......... .......... .......... .......... .......... 25% 14.9M 0s
00:45:17 1650K .......... .......... .......... .......... .......... 25% 15.3M 0s
00:45:17 1700K .......... .......... .......... .......... .......... 26% 25.4M 0s
00:45:17 1750K .......... .......... .......... .......... .......... 27% 15.2M 0s
00:45:17 1800K .......... .......... .......... .......... .......... 28% 19.6M 0s
00:45:17 1850K .......... .......... .......... .......... .......... 28% 13.8M 0s
00:45:17 1900K .......... .......... .......... .......... .......... 29% 19.3M 0s
00:45:17 1950K .......... .......... .......... .......... .......... 30% 35.3M 0s
00:45:17 2000K .......... .......... .......... .......... .......... 31% 13.5M 0s
00:45:17 2050K .......... .......... .......... .......... .......... 31% 14.1M 0s
00:45:17 2100K .......... .......... .......... .......... .......... 32% 16.6M 0s
00:45:17 2150K .......... .......... .......... .......... .......... 33% 21.9M 0s
00:45:17 2200K .......... .......... .......... .......... .......... 34% 27.6M 0s
00:45:17 2250K .......... .......... .......... .......... .......... 34% 14.8M 0s
00:45:17 2300K .......... .......... .......... .......... .......... 35% 22.6M 0s
00:45:17 2350K .......... .......... .......... .......... .......... 36% 11.6M 0s
00:45:17 2400K .......... .......... .......... .......... .......... 37% 30.7M 0s
00:45:17 2450K .......... .......... .......... .......... .......... 37% 19.3M 0s
00:45:17 2500K .......... .......... .......... .......... .......... 38% 12.4M 0s
00:45:17 2550K .......... .......... .......... .......... .......... 39% 32.9M 0s
00:45:17 2600K .......... .......... .......... .......... .......... 40% 12.0M 0s
00:45:17 2650K .......... .......... .......... .......... .......... 40% 22.0M 0s
00:45:17 2700K .......... .......... .......... .......... .......... 41% 33.8M 0s
00:45:17 2750K .......... .......... .......... .......... .......... 42% 11.1M 0s
00:45:17 2800K .......... .......... .......... .......... .......... 43% 34.6M 0s
00:45:17 2850K .......... .......... .......... .......... .......... 43% 12.0M 0s
00:45:17 2900K .......... .......... .......... .......... .......... 44% 20.0M 0s
00:45:17 2950K .......... .......... .......... .......... .......... 45% 26.1M 0s
00:45:17 3000K .......... .......... .......... .......... .......... 46% 12.9M 0s
00:45:17 3050K .......... .......... .......... .......... .......... 47% 34.5M 0s
00:45:17 3100K .......... .......... .......... .......... .......... 47% 21.4M 0s
00:45:17 3150K .......... .......... .......... .......... .......... 48% 11.6M 0s
00:45:17 3200K .......... .......... .......... .......... .......... 49% 26.1M 0s
00:45:17 3250K .......... .......... .......... .......... .......... 50% 12.4M 0s
00:45:17 3300K .......... .......... .......... .......... .......... 50% 35.2M 0s
00:45:17 3350K .......... .......... .......... .......... .......... 51% 17.4M 0s
00:45:17 3400K .......... .......... .......... .......... .......... 52% 13.4M 0s
00:45:17 3450K .......... .......... .......... .......... .......... 53% 24.9M 0s
00:45:17 3500K .......... .......... .......... .......... .......... 53% 32.3M 0s
00:45:17 3550K .......... .......... .......... .......... .......... 54% 13.0M 0s
00:45:17 3600K .......... .......... .......... .......... .......... 55% 18.0M 0s
00:45:17 3650K .......... .......... .......... .......... .......... 56% 13.1M 0s
00:45:17 3700K .......... .......... .......... .......... .......... 56% 25.0M 0s
00:45:17 3750K .......... .......... .......... .......... .......... 57% 28.8M 0s
00:45:17 3800K .......... .......... .......... .......... .......... 58% 13.8M 0s
00:45:17 3850K .......... .......... .......... .......... .......... 59% 17.6M 0s
00:45:17 3900K .......... .......... .......... .......... .......... 59% 19.0M 0s
00:45:17 3950K .......... .......... .......... .......... .......... 60% 22.0M 0s
00:45:17 4000K .......... .......... .......... .......... .......... 61% 15.3M 0s
00:45:17 4050K .......... .......... .......... .......... .......... 62% 14.9M 0s
00:45:17 4100K .......... .......... .......... .......... .......... 62% 18.2M 0s
00:45:17 4150K .......... .......... .......... .......... .......... 63% 21.3M 0s
00:45:17 4200K .......... .......... .......... .......... .......... 64% 20.9M 0s
00:45:17 4250K .......... .......... .......... .......... .......... 65% 15.6M 0s
00:45:17 4300K .......... .......... .......... .......... .......... 65% 15.2M 0s
00:45:17 4350K .......... .......... .......... .......... .......... 66% 20.1M 0s
00:45:17 4400K .......... .......... .......... .......... .......... 67% 12.7M 0s
00:45:17 4450K .......... .......... .......... .......... .......... 68% 22.0M 0s
00:45:17 4500K .......... .......... .......... .......... .......... 69% 24.8M 0s
00:45:17 4550K .......... .......... .......... .......... .......... 69% 13.6M 0s
00:45:17 4600K .......... .......... .......... .......... .......... 70% 23.3M 0s
00:45:17 4650K .......... .......... .......... .......... .......... 71% 13.5M 0s
00:45:17 4700K .......... .......... .......... .......... .......... 72% 19.6M 0s
00:45:17 4750K .......... .......... .......... .......... .......... 72% 26.5M 0s
00:45:17 4800K .......... .......... .......... .......... .......... 73% 15.5M 0s
00:45:17 4850K .......... .......... .......... .......... .......... 74% 19.2M 0s
00:45:17 4900K .......... .......... .......... .......... .......... 75% 25.1M 0s
00:45:17 4950K .......... .......... .......... .......... .......... 75% 15.1M 0s
00:45:17 5000K .......... .......... .......... .......... .......... 76% 27.3M 0s
00:45:17 5050K .......... .......... .......... .......... .......... 77% 9.45M 0s
00:45:17 5100K .......... .......... .......... .......... .......... 78% 20.2M 0s
00:45:17 5150K .......... .......... .......... .......... .......... 78% 29.5M 0s
00:45:17 5200K .......... .......... .......... .......... .......... 79% 13.4M 0s
00:45:17 5250K .......... .......... .......... .......... .......... 80% 23.1M 0s
00:45:17 5300K .......... .......... .......... .......... .......... 81% 11.8M 0s
00:45:17 5350K .......... .......... .......... .......... .......... 81% 33.2M 0s
00:45:17 5400K .......... .......... .......... .......... .......... 82% 21.3M 0s
00:45:17 5450K .......... .......... .......... .......... .......... 83% 13.7M 0s
00:45:17 5500K .......... .......... .......... .......... .......... 84% 22.0M 0s
00:45:17 5550K .......... .......... .......... .......... .......... 84% 11.8M 0s
00:45:17 5600K .......... .......... .......... .......... .......... 85% 21.8M 0s
00:45:17 5650K .......... .......... .......... .......... .......... 86% 30.3M 0s
00:45:17 5700K .......... .......... .......... .......... .......... 87% 14.3M 0s
00:45:17 5750K .......... .......... .......... .......... .......... 87% 21.0M 0s
00:45:17 5800K .......... .......... .......... .......... .......... 88% 24.5M 0s
00:45:17 5850K .......... .......... .......... .......... .......... 89% 11.7M 0s
00:45:17 5900K .......... .......... .......... .......... .......... 90% 29.0M 0s
00:45:17 5950K .......... .......... .......... .......... .......... 91% 11.0M 0s
00:45:17 6000K .......... .......... .......... .......... .......... 91% 32.8M 0s
00:45:17 6050K .......... .......... .......... .......... .......... 92% 26.1M 0s
00:45:17 6100K .......... .......... .......... .......... .......... 93% 11.8M 0s
00:45:17 6150K .......... .......... .......... .......... .......... 94% 29.3M 0s
00:45:17 6200K .......... .......... .......... .......... .......... 94% 10.8M 0s
00:45:17 6250K .......... .......... .......... .......... .......... 95% 33.3M 0s
00:45:17 6300K .......... .......... .......... .......... .......... 96% 26.4M 0s
00:45:17 6350K .......... .......... .......... .......... .......... 97% 10.3M 0s
00:45:17 6400K .......... .......... .......... .......... .......... 97% 31.3M 0s
00:45:17 6450K .......... .......... .......... .......... .......... 98% 11.9M 0s
00:45:17 6500K .......... .......... .......... .......... .......... 99% 29.2M 0s
00:45:17 6550K .......... .......... .......... .......... . 100% 35.4M=0.4s
00:45:17
00:45:17 2026-02-09 00:45:17 (16.9 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zstd-jni-1.5.5-7.jar’ saved [6749842/6749842]
00:45:17
00:45:17 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/scalableminds/blosc-java/0.1-1.21.4/blosc-java-0.1-1.21.4.jar
00:45:17 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:17 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:17 --2026-02-09 00:45:17-- https://repo1.maven.org/maven2/com/scalableminds/blosc-java/0.1-1.21.4/blosc-java-0.1-1.21.4.jar
00:45:17 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:45:17 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:18 HTTP request sent, awaiting response... 200 OK
00:45:18 Length: 1732435 (1.7M) [application/java-archive]
00:45:18 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/blosc-java-0.1-1.21.4.jar’
00:45:18
00:45:18 0K .......... .......... .......... .......... .......... 2% 3.56M 0s
00:45:18 50K .......... .......... .......... .......... .......... 5% 8.56M 0s
00:45:18 100K .......... .......... .......... .......... .......... 8% 4.49M 0s
00:45:18 150K .......... .......... .......... .......... .......... 11% 10.3M 0s
00:45:18 200K .......... .......... .......... .......... .......... 14% 13.2M 0s
00:45:18 250K .......... .......... .......... .......... .......... 17% 10.9M 0s
00:45:18 300K .......... .......... .......... .......... .......... 20% 17.9M 0s
00:45:18 350K .......... .......... .......... .......... .......... 23% 17.5M 0s
00:45:18 400K .......... .......... .......... .......... .......... 26% 24.9M 0s
00:45:18 450K .......... .......... .......... .......... .......... 29% 14.9M 0s
00:45:18 500K .......... .......... .......... .......... .......... 32% 13.7M 0s
00:45:18 550K .......... .......... .......... .......... .......... 35% 25.8M 0s
00:45:18 600K .......... .......... .......... .......... .......... 38% 17.3M 0s
00:45:18 650K .......... .......... .......... .......... .......... 41% 16.4M 0s
00:45:18 700K .......... .......... .......... .......... .......... 44% 21.4M 0s
00:45:18 750K .......... .......... .......... .......... .......... 47% 14.1M 0s
00:45:18 800K .......... .......... .......... .......... .......... 50% 23.2M 0s
00:45:18 850K .......... .......... .......... .......... .......... 53% 13.0M 0s
00:45:18 900K .......... .......... .......... .......... .......... 56% 28.6M 0s
00:45:18 950K .......... .......... .......... .......... .......... 59% 42.3M 0s
00:45:18 1000K .......... .......... .......... .......... .......... 62% 14.8M 0s
00:45:18 1050K .......... .......... .......... .......... .......... 65% 13.5M 0s
00:45:18 1100K .......... .......... .......... .......... .......... 67% 12.9M 0s
00:45:18 1150K .......... .......... .......... .......... .......... 70% 29.7M 0s
00:45:18 1200K .......... .......... .......... .......... .......... 73% 34.5M 0s
00:45:18 1250K .......... .......... .......... .......... .......... 76% 15.6M 0s
00:45:18 1300K .......... .......... .......... .......... .......... 79% 13.5M 0s
00:45:18 1350K .......... .......... .......... .......... .......... 82% 18.3M 0s
00:45:18 1400K .......... .......... .......... .......... .......... 85% 32.7M 0s
00:45:18 1450K .......... .......... .......... .......... .......... 88% 17.5M 0s
00:45:18 1500K .......... .......... .......... .......... .......... 91% 13.1M 0s
00:45:18 1550K .......... .......... .......... .......... .......... 94% 12.6M 0s
00:45:18 1600K .......... .......... .......... .......... .......... 97% 17.2M 0s
00:45:18 1650K .......... .......... .......... .......... . 100% 22.4M=0.1s
00:45:18
00:45:18 2026-02-09 00:45:18 (13.8 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/blosc-java-0.1-1.21.4.jar’ saved [1732435/1732435]
00:45:18
00:45:18 + for x in *.jar
00:45:18 + mv omero-zarr-pixel-buffer-0.6.2-SNAPSHOT.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server
00:45:18 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:45:18 ++ deactivate nondestructive
00:45:18 ++ '[' -n '' ']'
00:45:18 ++ '[' -n '' ']'
00:45:18 ++ hash -r
00:45:18 ++ '[' -n '' ']'
00:45:18 ++ unset VIRTUAL_ENV
00:45:18 ++ unset VIRTUAL_ENV_PROMPT
00:45:18 ++ '[' '!' nondestructive = nondestructive ']'
00:45:18 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:45:18 ++ export VIRTUAL_ENV
00:45:18 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:45:18 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:45:18 ++ export PATH
00:45:18 ++ '[' -n '' ']'
00:45:18 ++ '[' -z '' ']'
00:45:18 ++ _OLD_VIRTUAL_PS1=
00:45:18 ++ PS1='(.venv3) '
00:45:18 ++ export PS1
00:45:18 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:45:18 ++ export VIRTUAL_ENV_PROMPT
00:45:18 ++ hash -r
00:45:18 + pip install -U pip
00:45:18 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
00:45:18 Collecting pip
00:45:18 Using cached pip-26.0.1-py3-none-any.whl (1.8 MB)
00:45:18 Installing collected packages: pip
00:45:18 Attempting uninstall: pip
00:45:18 Found existing installation: pip 22.3.1
00:45:18 Uninstalling pip-22.3.1:
00:45:18 Successfully uninstalled pip-22.3.1
00:45:19 Successfully installed pip-26.0.1
00:45:19 WARNING: There was an error checking the latest version of pip.
00:45:19 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
00:45:20 Collecting zeroc-ice==3.6.5
00:45:20 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:45:22 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 20.0 MB/s 0:00:01
00:45:22 Installing collected packages: zeroc-ice
00:45:23 Successfully installed zeroc-ice-3.6.5
00:45:23 + pip install markdown
00:45:23 Collecting markdown
00:45:23 Using cached markdown-3.10.1-py3-none-any.whl.metadata (5.1 kB)
00:45:23 Using cached markdown-3.10.1-py3-none-any.whl (107 kB)
00:45:23 Installing collected packages: markdown
00:45:23 Successfully installed markdown-3.10.1
00:45:23 + pip install reportlab
00:45:24 Collecting reportlab
00:45:24 Using cached reportlab-4.4.9-py3-none-any.whl.metadata (1.7 kB)
00:45:24 Collecting pillow>=9.0.0 (from reportlab)
00:45:24 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.8 kB)
00:45:24 Collecting charset-normalizer (from reportlab)
00:45:24 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (37 kB)
00:45:24 Using cached reportlab-4.4.9-py3-none-any.whl (2.0 MB)
00:45:24 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB)
00:45:24 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB)
00:45:24 Installing collected packages: pillow, charset-normalizer, reportlab
00:45:25
00:45:25 Successfully installed charset-normalizer-3.4.4 pillow-12.1.0 reportlab-4.4.9
00:45:25 + pip install omego
00:45:26 Collecting omego
00:45:26 Using cached omego-0.7.0-py3-none-any.whl
00:45:26 Collecting future (from omego)
00:45:26 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
00:45:26 Collecting yaclifw>=0.1.1 (from omego)
00:45:26 Using cached yaclifw-0.2.0-py3-none-any.whl
00:45:26 Collecting six (from yaclifw>=0.1.1->omego)
00:45:26 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
00:45:26 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:45:26 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
00:45:26 Installing collected packages: six, future, yaclifw, omego
00:45:26
00:45:26 Successfully installed future-1.0.0 omego-0.7.0 six-1.17.0 yaclifw-0.2.0
00:45:26 + pip install tables
00:45:27 Collecting tables
00:45:27 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB)
00:45:27 Collecting numpy>=1.20.0 (from tables)
00:45:27 Using cached numpy-2.4.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB)
00:45:27 Collecting numexpr>=2.6.2 (from tables)
00:45:27 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
00:45:27 Collecting packaging (from tables)
00:45:27 Using cached packaging-26.0-py3-none-any.whl.metadata (3.3 kB)
00:45:27 Collecting py-cpuinfo (from tables)
00:45:27 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
00:45:27 Collecting blosc2>=2.3.0 (from tables)
00:45:27 Using cached blosc2-4.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (7.6 kB)
00:45:27 Collecting typing-extensions>=4.4.0 (from tables)
00:45:27 Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB)
00:45:27 Collecting ndindex (from blosc2>=2.3.0->tables)
00:45:27 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
00:45:27 Collecting msgpack (from blosc2>=2.3.0->tables)
00:45:27 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
00:45:27 Collecting requests (from blosc2>=2.3.0->tables)
00:45:27 Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB)
00:45:27 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.4.4)
00:45:27 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables)
00:45:27 Using cached idna-3.11-py3-none-any.whl.metadata (8.4 kB)
00:45:27 Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables)
00:45:27 Using cached urllib3-2.6.3-py3-none-any.whl.metadata (6.9 kB)
00:45:27 Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables)
00:45:27 Using cached certifi-2026.1.4-py3-none-any.whl.metadata (2.5 kB)
00:45:27 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
00:45:27 Using cached blosc2-4.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (4.7 MB)
00:45:27 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB)
00:45:27 Using cached numpy-2.4.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
00:45:27 Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB)
00:45:27 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (426 kB)
00:45:27 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
00:45:27 Using cached packaging-26.0-py3-none-any.whl (74 kB)
00:45:27 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
00:45:27 Using cached requests-2.32.5-py3-none-any.whl (64 kB)
00:45:27 Using cached idna-3.11-py3-none-any.whl (71 kB)
00:45:27 Using cached urllib3-2.6.3-py3-none-any.whl (131 kB)
00:45:27 Using cached certifi-2026.1.4-py3-none-any.whl (152 kB)
00:45:28 Installing collected packages: py-cpuinfo, urllib3, typing-extensions, packaging, numpy, ndindex, msgpack, idna, certifi, requests, numexpr, blosc2, tables
00:45:31
00:45:31 Successfully installed blosc2-4.0.0 certifi-2026.1.4 idna-3.11 msgpack-1.1.2 ndindex-1.10.1 numexpr-2.14.1 numpy-2.4.2 packaging-26.0 py-cpuinfo-9.0.0 requests-2.32.5 tables-3.10.2 typing-extensions-4.15.0 urllib3-2.6.3
00:45:31 + pip install jinja2
00:45:31 Collecting jinja2
00:45:31 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
00:45:31 Collecting MarkupSafe>=2.0 (from jinja2)
00:45:31 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
00:45:31 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
00:45:31 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
00:45:31 Installing collected packages: MarkupSafe, jinja2
00:45:32
00:45:32 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
00:45:32 + pip install omero-py
00:45:32 Collecting omero-py
00:45:32 Using cached omero_py-5.21.3-py3-none-any.whl.metadata (6.5 kB)
00:45:32 Collecting appdirs (from omero-py)
00:45:32 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
00:45:32 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
00:45:32 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.2)
00:45:32 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.1.0)
00:45:32 Collecting PyYAML (from omero-py)
00:45:32 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
00:45:32 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
00:45:32 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.32.5)
00:45:32 Collecting portalocker (from omero-py)
00:45:32 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
00:45:32 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.4)
00:45:32 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.11)
00:45:32 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2.6.3)
00:45:32 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.1.4)
00:45:32 Using cached omero_py-5.21.3-py3-none-any.whl (2.8 MB)
00:45:32 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:45:32 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
00:45:32 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
00:45:32 Installing collected packages: appdirs, PyYAML, portalocker, omero-py
00:45:34
00:45:34 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.21.3 portalocker-3.2.0
00:45:34 + pip install pyarrow
00:45:35 Collecting pyarrow
00:45:35 Using cached pyarrow-23.0.0-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (3.0 kB)
00:45:35 Using cached pyarrow-23.0.0-cp311-cp311-manylinux_2_28_x86_64.whl (47.5 MB)
00:45:35 Installing collected packages: pyarrow
00:45:36 Successfully installed pyarrow-23.0.0
00:45:36 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
00:45:36 Collecting omero-metadata
00:45:36 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-dipcadg0/omero-metadata_6378a6e391314144bbd6cf1c61817694
00:45:36 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-dipcadg0/omero-metadata_6378a6e391314144bbd6cf1c61817694
00:45:37 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 763bd125c5b4d52f965fe35704332beeccf31889
00:45:37 Installing build dependencies: started
00:45:38 Installing build dependencies: finished with status 'done'
00:45:38 Getting requirements to build wheel: started
00:45:39 Getting requirements to build wheel: finished with status 'done'
00:45:39 Preparing metadata (pyproject.toml): started
00:45:39 Preparing metadata (pyproject.toml): finished with status 'done'
00:45:39 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.21.3)
00:45:39 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.3)
00:45:39 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6)
00:45:39 Collecting pandas (from omero-metadata)
00:45:39 Using cached pandas-3.0.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (79 kB)
00:45:39 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
00:45:39 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
00:45:39 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.4.2)
00:45:39 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.1.0)
00:45:39 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
00:45:39 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.5)
00:45:39 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0)
00:45:39 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.3)
00:45:39 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
00:45:39 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
00:45:39 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
00:45:39 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.4)
00:45:39 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.11)
00:45:39 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.6.3)
00:45:39 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.1.4)
00:45:39 Using cached pandas-3.0.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (11.2 MB)
00:45:39 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
00:45:39 Building wheels for collected packages: omero-metadata
00:45:39 Building wheel for omero-metadata (pyproject.toml): started
00:45:39 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
00:45:39 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39376 sha256=014a8801252137ca9a008012804e2af7502900986ae402d01fce0cb272e3f489
00:45:39 Stored in directory: /tmp/pip-ephem-wheel-cache-vesaphze/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
00:45:39 Successfully built omero-metadata
00:45:39 Installing collected packages: python-dateutil, pandas, omero-metadata
00:45:44
00:45:44 Successfully installed omero-metadata-0.13.1.dev0 pandas-3.0.0 python-dateutil-2.9.0.post0
00:45:44 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
00:45:44 Collecting omero-cli-render
00:45:44 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-69jfv2rb/omero-cli-render_d3cc7df5efdb4ba8af3ed88f638f5855
00:45:44 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-69jfv2rb/omero-cli-render_d3cc7df5efdb4ba8af3ed88f638f5855
00:45:45 Running command git checkout -b merge_ci --track origin/merge_ci
00:45:45 Switched to a new branch 'merge_ci'
00:45:45 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:45:45 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 1ace455aeff0cdae938e2b64574e3bb73580ffd1
00:45:45 Installing build dependencies: started
00:45:46 Installing build dependencies: finished with status 'done'
00:45:46 Getting requirements to build wheel: started
00:45:46 Getting requirements to build wheel: finished with status 'done'
00:45:46 Preparing metadata (pyproject.toml): started
00:45:46 Preparing metadata (pyproject.toml): finished with status 'done'
00:45:46 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3)
00:45:46 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.21.3)
00:45:46 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
00:45:46 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
00:45:46 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.2)
00:45:46 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.1.0)
00:45:46 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
00:45:46 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.5)
00:45:46 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0)
00:45:46 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.4)
00:45:46 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.11)
00:45:46 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.6.3)
00:45:46 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.1.4)
00:45:46 Building wheels for collected packages: omero-cli-render
00:45:46 Building wheel for omero-cli-render (pyproject.toml): started
00:45:47 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
00:45:47 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19840 sha256=376ff7846260f4df70b602dee9f1437ec8e5d17065ab933d29c817f2b36f3788
00:45:47 Stored in directory: /tmp/pip-ephem-wheel-cache-om3jhzg8/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
00:45:47 Successfully built omero-cli-render
00:45:47 Installing collected packages: omero-cli-render
00:45:47 Successfully installed omero-cli-render-0.8.2.dev0
00:45:47 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
00:45:47 Collecting omero-cli-duplicate
00:45:47 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-i5dz_5qu/omero-cli-duplicate_d55b1c3a7ebd41a69303eb6976d5e0e9
00:45:47 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-i5dz_5qu/omero-cli-duplicate_d55b1c3a7ebd41a69303eb6976d5e0e9
00:45:48 Running command git checkout -b merge_ci --track origin/merge_ci
00:45:48 Switched to a new branch 'merge_ci'
00:45:48 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:45:48 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit f0dcfeb5414d2aed1f9b9f241552a56496b8c8ee
00:45:48 Installing build dependencies: started
00:45:49 Installing build dependencies: finished with status 'done'
00:45:49 Getting requirements to build wheel: started
00:45:49 Getting requirements to build wheel: finished with status 'done'
00:45:49 Preparing metadata (pyproject.toml): started
00:45:49 Preparing metadata (pyproject.toml): finished with status 'done'
00:45:49 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.21.3)
00:45:49 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
00:45:49 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
00:45:49 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.2)
00:45:49 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.1.0)
00:45:49 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3)
00:45:49 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
00:45:49 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.5)
00:45:49 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0)
00:45:49 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.4)
00:45:49 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.11)
00:45:49 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.6.3)
00:45:49 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.1.4)
00:45:49 Building wheels for collected packages: omero-cli-duplicate
00:45:49 Building wheel for omero-cli-duplicate (pyproject.toml): started
00:45:50 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
00:45:50 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11539 sha256=3eb988506fcd5929411f491aff0c0bbd5b6c01f2d140fd4f958b2a3628e752e3
00:45:50 Stored in directory: /tmp/pip-ephem-wheel-cache-rgtm7s5d/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
00:45:50 Successfully built omero-cli-duplicate
00:45:50 Installing collected packages: omero-cli-duplicate
00:45:50 Successfully installed omero-cli-duplicate-0.4.1.dev0
00:45:50 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr
00:45:50 Collecting omero-cli-zarr
00:45:50 Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-u6f8nsli/omero-cli-zarr_b8f266c6a1dd45fb936511c016fcc863
00:45:50 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-u6f8nsli/omero-cli-zarr_b8f266c6a1dd45fb936511c016fcc863
00:45:51 Running command git checkout -b merge_ci --track origin/merge_ci
00:45:51 Switched to a new branch 'merge_ci'
00:45:51 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:45:51 Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit 26880012e5cd7b8cd0a1b649fe2b65382b10c16f
00:45:51 Installing build dependencies: started
00:45:52 Installing build dependencies: finished with status 'done'
00:45:52 Getting requirements to build wheel: started
00:45:52 Getting requirements to build wheel: finished with status 'done'
00:45:52 Installing backend dependencies: started
00:45:53 Installing backend dependencies: finished with status 'done'
00:45:53 Preparing metadata (pyproject.toml): started
00:45:53 Preparing metadata (pyproject.toml): finished with status 'done'
00:45:53 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.21.3)
00:45:53 Collecting ome-zarr>=0.12.0 (from omero-cli-zarr)
00:45:53 Using cached ome_zarr-0.13.0-py3-none-any.whl.metadata (2.9 kB)
00:45:53 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.12.0->omero-cli-zarr) (2.4.2)
00:45:53 Collecting dask<=2026.1.1,>=2025.12.0 (from ome-zarr>=0.12.0->omero-cli-zarr)
00:45:53 Using cached dask-2026.1.1-py3-none-any.whl.metadata (3.8 kB)
00:45:54 Collecting zarr>=3.0.0 (from ome-zarr>=0.12.0->omero-cli-zarr)
00:45:54 Using cached zarr-3.1.5-py3-none-any.whl.metadata (10 kB)
00:45:54 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:54 Using cached fsspec-2026.2.0-py3-none-any.whl.metadata (10 kB)
00:45:54 Collecting aiohttp (from ome-zarr>=0.12.0->omero-cli-zarr)
00:45:54 Using cached aiohttp-3.13.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
00:45:54 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.12.0->omero-cli-zarr) (2.32.5)
00:45:54 Collecting scikit-image>=0.19.0 (from ome-zarr>=0.12.0->omero-cli-zarr)
00:45:54 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB)
00:45:54 Collecting toolz (from ome-zarr>=0.12.0->omero-cli-zarr)
00:45:54 Using cached toolz-1.1.0-py3-none-any.whl.metadata (5.1 kB)
00:45:54 Collecting rangehttpserver (from ome-zarr>=0.12.0->omero-cli-zarr)
00:45:54 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl.metadata (769 bytes)
00:45:54 Collecting click>=8.1 (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:54 Using cached click-8.3.1-py3-none-any.whl.metadata (2.6 kB)
00:45:54 Collecting cloudpickle>=3.0.0 (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:54 Using cached cloudpickle-3.1.2-py3-none-any.whl.metadata (7.1 kB)
00:45:54 Requirement already satisfied: packaging>=20.0 in ./.venv3/lib64/python3.11/site-packages (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.12.0->omero-cli-zarr) (26.0)
00:45:54 Collecting partd>=1.4.0 (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:54 Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB)
00:45:54 Requirement already satisfied: pyyaml>=5.3.1 in ./.venv3/lib64/python3.11/site-packages (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.12.0->omero-cli-zarr) (6.0.3)
00:45:54 Collecting importlib_metadata>=4.13.0 (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:54 Using cached importlib_metadata-8.7.1-py3-none-any.whl.metadata (4.7 kB)
00:45:54 Collecting s3fs>2024.2.0 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:54 Using cached s3fs-2026.2.0-py3-none-any.whl.metadata (1.2 kB)
00:45:54 Collecting zipp>=3.20 (from importlib_metadata>=4.13.0->dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:54 Using cached zipp-3.23.0-py3-none-any.whl.metadata (3.6 kB)
00:45:54 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.4.4)
00:45:54 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.0.0)
00:45:54 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (12.1.0)
00:45:54 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.6.5)
00:45:54 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.2.0)
00:45:54 Collecting locket (from partd>=1.4.0->dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:54 Using cached locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB)
00:45:54 Collecting aiobotocore<4.0.0,>=2.19.0 (from s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:54 Using cached aiobotocore-3.1.2-py3-none-any.whl.metadata (26 kB)
00:45:55 Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:55 Using cached aioitertools-0.13.0-py3-none-any.whl.metadata (3.3 kB)
00:45:55 Collecting botocore<1.42.43,>=1.41.0 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:55 Using cached botocore-1.42.42-py3-none-any.whl.metadata (5.9 kB)
00:45:55 Requirement already satisfied: python-dateutil<3.0.0,>=2.1 in ./.venv3/lib64/python3.11/site-packages (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr) (2.9.0.post0)
00:45:55 Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:55 Using cached jmespath-1.1.0-py3-none-any.whl.metadata (7.6 kB)
00:45:55 Collecting multidict<7.0.0,>=6.0.0 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:55 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (5.3 kB)
00:45:55 Collecting wrapt<3.0.0,>=1.10.10 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:55 Using cached wrapt-2.1.1-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (7.4 kB)
00:45:56 Collecting aiohappyeyeballs>=2.5.0 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:56 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl.metadata (5.9 kB)
00:45:57 Collecting aiosignal>=1.4.0 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:57 Using cached aiosignal-1.4.0-py3-none-any.whl.metadata (3.7 kB)
00:45:57 Collecting attrs>=17.3.0 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:57 Using cached attrs-25.4.0-py3-none-any.whl.metadata (10 kB)
00:45:57 Collecting frozenlist>=1.1.1 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:57 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (20 kB)
00:45:57 Collecting propcache>=0.2.0 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:57 Using cached propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (13 kB)
00:45:57 Collecting yarl<2.0,>=1.17.0 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:57 Using cached yarl-1.22.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (75 kB)
00:45:57 Requirement already satisfied: urllib3!=2.2.0,<3,>=1.25.4 in ./.venv3/lib64/python3.11/site-packages (from botocore<1.42.43,>=1.41.0->aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr) (2.6.3)
00:45:57 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil<3.0.0,>=2.1->aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr) (1.17.0)
00:45:57 Requirement already satisfied: idna>=2.0 in ./.venv3/lib64/python3.11/site-packages (from yarl<2.0,>=1.17.0->aiohttp->ome-zarr>=0.12.0->omero-cli-zarr) (3.11)
00:45:57 Requirement already satisfied: typing-extensions>=4.2 in ./.venv3/lib64/python3.11/site-packages (from aiosignal>=1.4.0->aiohttp->ome-zarr>=0.12.0->omero-cli-zarr) (4.15.0)
00:45:57 Collecting scipy>=1.11.4 (from scikit-image>=0.19.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:57 Using cached scipy-1.17.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (62 kB)
00:45:57 Collecting networkx>=3.0 (from scikit-image>=0.19.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:57 Using cached networkx-3.6.1-py3-none-any.whl.metadata (6.8 kB)
00:45:57 Collecting imageio!=2.35.0,>=2.33 (from scikit-image>=0.19.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:57 Using cached imageio-2.37.2-py3-none-any.whl.metadata (9.7 kB)
00:45:57 Collecting tifffile>=2022.8.12 (from scikit-image>=0.19.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:57 Using cached tifffile-2026.1.28-py3-none-any.whl.metadata (30 kB)
00:45:57 Collecting lazy-loader>=0.4 (from scikit-image>=0.19.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:57 Using cached lazy_loader-0.4-py3-none-any.whl.metadata (7.6 kB)
00:45:57 Collecting donfig>=0.8 (from zarr>=3.0.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:57 Using cached donfig-0.8.1.post1-py3-none-any.whl.metadata (5.0 kB)
00:45:57 Collecting google-crc32c>=1.5 (from zarr>=3.0.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:57 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl.metadata (1.7 kB)
00:45:58 Collecting numcodecs>=0.14 (from zarr>=3.0.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:58 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (3.4 kB)
00:45:58 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.12.0->omero-cli-zarr) (3.4.4)
00:45:58 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.12.0->omero-cli-zarr) (2026.1.4)
00:45:58 Using cached ome_zarr-0.13.0-py3-none-any.whl (42 kB)
00:45:58 Using cached dask-2026.1.1-py3-none-any.whl (1.5 MB)
00:45:58 Using cached click-8.3.1-py3-none-any.whl (108 kB)
00:45:58 Using cached cloudpickle-3.1.2-py3-none-any.whl (22 kB)
00:45:58 Using cached fsspec-2026.2.0-py3-none-any.whl (202 kB)
00:45:58 Using cached importlib_metadata-8.7.1-py3-none-any.whl (27 kB)
00:45:58 Using cached partd-1.4.2-py3-none-any.whl (18 kB)
00:45:58 Using cached s3fs-2026.2.0-py3-none-any.whl (31 kB)
00:45:58 Using cached aiobotocore-3.1.2-py3-none-any.whl (87 kB)
00:45:58 Using cached aiohttp-3.13.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.7 MB)
00:45:58 Using cached aioitertools-0.13.0-py3-none-any.whl (24 kB)
00:45:58 Using cached botocore-1.42.42-py3-none-any.whl (14.6 MB)
00:45:58 Using cached jmespath-1.1.0-py3-none-any.whl (20 kB)
00:45:58 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (246 kB)
00:45:58 Using cached wrapt-2.1.1-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (113 kB)
00:45:58 Using cached yarl-1.22.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (365 kB)
00:45:58 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl (15 kB)
00:45:58 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB)
00:45:58 Using cached attrs-25.4.0-py3-none-any.whl (67 kB)
00:45:58 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB)
00:45:58 Using cached propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (210 kB)
00:45:58 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB)
00:45:58 Using cached imageio-2.37.2-py3-none-any.whl (317 kB)
00:45:58 Using cached lazy_loader-0.4-py3-none-any.whl (12 kB)
00:45:58 Using cached networkx-3.6.1-py3-none-any.whl (2.1 MB)
00:45:58 Using cached scipy-1.17.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.1 MB)
00:45:58 Using cached tifffile-2026.1.28-py3-none-any.whl (233 kB)
00:45:58 Using cached toolz-1.1.0-py3-none-any.whl (58 kB)
00:45:58 Using cached zarr-3.1.5-py3-none-any.whl (284 kB)
00:45:58 Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB)
00:45:58 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl (33 kB)
00:45:58 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (9.1 MB)
00:45:58 Using cached zipp-3.23.0-py3-none-any.whl (10 kB)
00:45:58 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB)
00:45:58 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl (7.8 kB)
00:45:58 Building wheels for collected packages: omero-cli-zarr
00:45:58 Building wheel for omero-cli-zarr (pyproject.toml): started
00:45:58 Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done'
00:45:58 Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev152+g2688001-py3-none-any.whl size=38160 sha256=71be71f358f393fcecc0d6de36cfcd9294fedf48fd9e459e57c581c076538137
00:45:58 Stored in directory: /tmp/pip-ephem-wheel-cache-bh1wilpp/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529
00:45:58 Successfully built omero-cli-zarr
00:45:58 Installing collected packages: rangehttpserver, zipp, wrapt, toolz, tifffile, scipy, propcache, numcodecs, networkx, multidict, locket, lazy-loader, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, zarr, yarl, scikit-image, partd, importlib_metadata, botocore, aiosignal, dask, aiohttp, aiobotocore, s3fs, ome-zarr, omero-cli-zarr
00:46:08
00:46:08 Successfully installed aiobotocore-3.1.2 aiohappyeyeballs-2.6.1 aiohttp-3.13.3 aioitertools-0.13.0 aiosignal-1.4.0 attrs-25.4.0 botocore-1.42.42 click-8.3.1 cloudpickle-3.1.2 dask-2026.1.1 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.2.0 google-crc32c-1.8.0 imageio-2.37.2 importlib_metadata-8.7.1 jmespath-1.1.0 lazy-loader-0.4 locket-1.0.0 multidict-6.7.1 networkx-3.6.1 numcodecs-0.16.5 ome-zarr-0.13.0 omero-cli-zarr-0.5.5.dev152+g2688001 partd-1.4.2 propcache-0.4.1 rangehttpserver-1.4.0 s3fs-2026.2.0 scikit-image-0.26.0 scipy-1.17.0 tifffile-2026.1.28 toolz-1.1.0 wrapt-2.1.1 yarl-1.22.0 zarr-3.1.5 zipp-3.23.0
00:46:08 + pip install omero-certificates
00:46:09 Collecting omero-certificates
00:46:09 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
00:46:09 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.21.3)
00:46:09 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
00:46:09 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
00:46:09 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.2)
00:46:09 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.1.0)
00:46:09 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3)
00:46:09 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
00:46:09 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.5)
00:46:09 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0)
00:46:09 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.4)
00:46:09 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.11)
00:46:09 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.6.3)
00:46:09 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.1.4)
00:46:09 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
00:46:09 Installing collected packages: omero-certificates
00:46:09 Successfully installed omero-certificates-0.4.0
00:46:09 + for x in *.tar.gz
00:46:09 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
00:46:09 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
00:46:09 Installing build dependencies: started
00:46:10 Installing build dependencies: finished with status 'done'
00:46:10 Getting requirements to build wheel: started
00:46:10 Getting requirements to build wheel: finished with status 'done'
00:46:10 Preparing metadata (pyproject.toml): started
00:46:10 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:10 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.21.3)
00:46:10 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
00:46:10 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
00:46:10 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.2)
00:46:10 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.1.0)
00:46:10 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3)
00:46:10 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
00:46:10 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.5)
00:46:10 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0)
00:46:10 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.4)
00:46:10 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.11)
00:46:10 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.6.3)
00:46:10 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.1.4)
00:46:10 Building wheels for collected packages: omero-dropbox
00:46:10 Building wheel for omero-dropbox (pyproject.toml): started
00:46:11 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
00:46:11 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49138 sha256=8bf4a2d0161d4983fecfb3ae1f7713824f8f3770c2d7edacac6d1e7d3b266ebc
00:46:11 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
00:46:11 Successfully built omero-dropbox
00:46:11 Installing collected packages: omero-dropbox
00:46:11 Successfully installed omero-dropbox-5.7.1.dev0
00:46:11 + for x in *.tar.gz
00:46:11 + pip install -U omero_marshal-0.9.2.dev0.tar.gz
00:46:11 Processing ./omero_marshal-0.9.2.dev0.tar.gz
00:46:11 Installing build dependencies: started
00:46:12 Installing build dependencies: finished with status 'done'
00:46:12 Getting requirements to build wheel: started
00:46:12 Getting requirements to build wheel: finished with status 'done'
00:46:12 Preparing metadata (pyproject.toml): started
00:46:12 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:12 Building wheels for collected packages: omero_marshal
00:46:12 Building wheel for omero_marshal (pyproject.toml): started
00:46:13 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
00:46:13 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88131 sha256=0b9c31ac4a49bec4a98a94e561d0b260a0a3ee839ec98a361d4c5c361fef1f40
00:46:13 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230
00:46:13 Successfully built omero_marshal
00:46:13 Installing collected packages: omero_marshal
00:46:14 Successfully installed omero_marshal-0.9.2.dev0
00:46:14 + for x in *.tar.gz
00:46:14 + pip install -U omero_py-5.22.0.dev0.tar.gz
00:46:14 Processing ./omero_py-5.22.0.dev0.tar.gz
00:46:15 Installing build dependencies: started
00:46:16 Installing build dependencies: finished with status 'done'
00:46:16 Getting requirements to build wheel: started
00:46:16 Getting requirements to build wheel: finished with status 'done'
00:46:16 Preparing metadata (pyproject.toml): started
00:46:16 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:16 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.4.4)
00:46:16 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.0.0)
00:46:16 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.4.2)
00:46:16 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (12.1.0)
00:46:16 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (6.0.3)
00:46:16 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.6.5)
00:46:16 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.32.5)
00:46:16 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.2.0)
00:46:16 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.4.4)
00:46:16 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.11)
00:46:16 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2.6.3)
00:46:16 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2026.1.4)
00:46:16 Building wheels for collected packages: omero-py
00:46:16 Building wheel for omero-py (pyproject.toml): started
00:46:17 Building wheel for omero-py (pyproject.toml): finished with status 'done'
00:46:17 Created wheel for omero-py: filename=omero_py-5.22.0.dev0-py3-none-any.whl size=2786541 sha256=4e7c6cacfaec206fdb6c1b95e918f517894f2eeadb52f14d8bcbe6b44e0be224
00:46:17 Stored in directory: /home/omero/.cache/pip/wheels/b2/dd/fb/0f3c8a08eddbfe6a2bff7fe7d61ee876973c474d282bc441e3
00:46:17 Successfully built omero-py
00:46:17 Installing collected packages: omero-py
00:46:17 Attempting uninstall: omero-py
00:46:17 Found existing installation: omero-py 5.21.3
00:46:17 Uninstalling omero-py-5.21.3:
00:46:18 Successfully uninstalled omero-py-5.21.3
00:46:20 Successfully installed omero-py-5.22.0.dev0
00:46:20 + for x in *.tar.gz
00:46:20 + pip install -U omero_scripts-5.10.1.dev0.tar.gz
00:46:20 Processing ./omero_scripts-5.10.1.dev0.tar.gz
00:46:20 Installing build dependencies: started
00:46:21 Installing build dependencies: finished with status 'done'
00:46:21 Getting requirements to build wheel: started
00:46:21 Getting requirements to build wheel: finished with status 'done'
00:46:21 Preparing metadata (pyproject.toml): started
00:46:21 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:21 Building wheels for collected packages: omero-scripts
00:46:21 Building wheel for omero-scripts (pyproject.toml): started
00:46:22 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
00:46:22 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=137002 sha256=7ef3d0a5ee55396f3830338c9c2905c9a538b06a3faf4269216c3ed6a6b9697c
00:46:22 Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e
00:46:22 Successfully built omero-scripts
00:46:22 Installing collected packages: omero-scripts
00:46:22 Successfully installed omero-scripts-5.10.1.dev0
00:46:22 + for x in *.tar.gz
00:46:22 + pip install -U omero_web-5.30.2.dev0.tar.gz
00:46:22 Processing ./omero_web-5.30.2.dev0.tar.gz
00:46:23 Installing build dependencies: started
00:46:23 Installing build dependencies: finished with status 'done'
00:46:23 Getting requirements to build wheel: started
00:46:24 Getting requirements to build wheel: finished with status 'done'
00:46:24 Preparing metadata (pyproject.toml): started
00:46:24 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:24 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (5.22.0.dev0)
00:46:24 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.30.2.dev0)
00:46:24 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl.metadata (23 kB)
00:46:24 Collecting Django<5.3,>=5.2.9 (from omero-web==5.30.2.dev0)
00:46:24 Using cached django-5.2.11-py3-none-any.whl.metadata (4.1 kB)
00:46:24 Collecting django-pipeline>=4.1.0 (from omero-web==5.30.2.dev0)
00:46:24 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
00:46:24 Collecting django-cors-headers==3.7.0 (from omero-web==5.30.2.dev0)
00:46:24 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
00:46:24 Collecting whitenoise>=5.3.0 (from omero-web==5.30.2.dev0)
00:46:24 Using cached whitenoise-6.11.0-py3-none-any.whl.metadata (3.7 kB)
00:46:24 Collecting gunicorn>=19.3 (from omero-web==5.30.2.dev0)
00:46:24 Using cached gunicorn-25.0.3-py3-none-any.whl.metadata (5.5 kB)
00:46:24 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (0.9.2.dev0)
00:46:24 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (12.1.0)
00:46:24 Collecting pytz (from omero-web==5.30.2.dev0)
00:46:24 Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB)
00:46:24 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (3.2.0)
00:46:24 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (26.0)
00:46:24 Collecting importlib-resources (from omero-web==5.30.2.dev0)
00:46:24 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
00:46:24 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.30.2.dev0)
00:46:24 Using cached asgiref-3.11.1-py3-none-any.whl.metadata (9.3 kB)
00:46:24 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.30.2.dev0)
00:46:24 Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB)
00:46:24 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.30.2.dev0) (65.5.1)
00:46:24 Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.30.2.dev0)
00:46:24 Using cached wheel-0.46.3-py3-none-any.whl.metadata (2.4 kB)
00:46:24 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (1.4.4)
00:46:24 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (1.0.0)
00:46:24 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.4.2)
00:46:24 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (6.0.3)
00:46:24 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.6.5)
00:46:24 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.32.5)
00:46:24 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.4.4)
00:46:24 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.11)
00:46:24 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.6.3)
00:46:24 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (2026.1.4)
00:46:24 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
00:46:24 Using cached django-5.2.11-py3-none-any.whl (8.3 MB)
00:46:24 Using cached asgiref-3.11.1-py3-none-any.whl (24 kB)
00:46:25 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl (28 kB)
00:46:25 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
00:46:25 Using cached gunicorn-25.0.3-py3-none-any.whl (171 kB)
00:46:25 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB)
00:46:25 Using cached whitenoise-6.11.0-py3-none-any.whl (20 kB)
00:46:25 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
00:46:25 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB)
00:46:25 Using cached wheel-0.46.3-py3-none-any.whl (30 kB)
00:46:25 Building wheels for collected packages: omero-web
00:46:25 Building wheel for omero-web (pyproject.toml): started
00:46:26 Building wheel for omero-web (pyproject.toml): finished with status 'done'
00:46:26 Created wheel for omero-web: filename=omero_web-5.30.2.dev0-py3-none-any.whl size=2819270 sha256=e445a96cb29bf2ad9ff08a81695305b9c248573c2b1a157f3186bb3094a735ed
00:46:26 Stored in directory: /home/omero/.cache/pip/wheels/22/8a/f9/2aa2b64b8351936989ad8693ee70db658c8360167f1ee574e7
00:46:26 Successfully built omero-web
00:46:26 Installing collected packages: pytz, whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
00:46:29
00:46:29 Successfully installed Django-5.2.11 asgiref-3.11.1 concurrent-log-handler-0.9.28 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-25.0.3 importlib-resources-6.5.2 omero-web-5.30.2.dev0 pytz-2025.2 sqlparse-0.5.5 wheel-0.46.3 whitenoise-6.11.0
00:46:29 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
00:46:29 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:29 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:29 --2026-02-09 00:46:29-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
00:46:29 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.108.133, 185.199.110.133, 185.199.109.133, ...
00:46:29 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.108.133|:443... connected.
00:46:29 HTTP request sent, awaiting response... 200 OK
00:46:30 Length: 137709 (134K) [text/plain]
00:46:30 Saving to: ‘Figure_To_Pdf.py’
00:46:30
00:46:30 0K .......... .......... .......... .......... .......... 37% 3.97M 0s
00:46:30 50K .......... .......... .......... .......... .......... 74% 11.1M 0s
00:46:30 100K .......... .......... .......... .... 100% 6.62M=0.02s
00:46:30
00:46:30 2026-02-09 00:46:30 (6.03 MB/s) - ‘Figure_To_Pdf.py’ saved [137709/137709]
00:46:30
00:46:30 + chmod 755 Figure_To_Pdf.py
00:46:30 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
00:46:30 + omero config set omero.db.name OMERO-server
00:46:32 + omero config set omero.db.host pg
00:46:34 + omero config set omero.db.user postgres
00:46:36 + omero config set omero.data.dir /home/omero/omero-server-data
00:46:38 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
00:46:40 + omero config set omero.db.poolsize 25
00:46:42 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
00:46:43 + omero config set omero.security.trustStorePassword changeit
00:46:45 + omero config set omero.mail.config true
00:46:47 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
00:46:49 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
00:46:51 + omero certificates
00:46:53 OpenSSL 3.5.1 1 Jul 2025 (Library: OpenSSL 3.5.1 1 Jul 2025)
00:46:53 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
00:46:53 + '[' false = true ']'
00:46:53 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
00:46:53 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
00:46:53 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
00:46:53 2026-02-09 00:46:53,783 [ omego.db] DEBUG dbcommand => upgrade
00:46:53 2026-02-09 00:46:53,783 [ omego.db] DEBUG dbhost => localhost
00:46:53 2026-02-09 00:46:53,783 [ omego.db] DEBUG dbname => OMERO-server
00:46:53 2026-02-09 00:46:53,784 [ omego.db] DEBUG dbpass => omero
00:46:53 2026-02-09 00:46:53,784 [ omego.db] DEBUG dbuser => omero
00:46:53 2026-02-09 00:46:53,784 [ omego.db] DEBUG rootpass => omero
00:46:53 2026-02-09 00:46:53,784 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
00:46:53 2026-02-09 00:46:53,784 [omego.extern] INFO Executing : omero version
00:46:55 OMERO.py version:
00:46:55 OMERO.server version:
00:46:55 5.6.3-593-5d52e90076-ice36-b48
00:46:55 5.22.0.dev0
00:46:55 2026-02-09 00:46:55,847 [omego.extern] INFO Completed [2.063 s]
00:46:55 2026-02-09 00:46:55,847 [omego.extern] DEBUG Using omero CLI from omero
00:46:55 2026-02-09 00:46:55,847 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
00:46:55 2026-02-09 00:46:55,847 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:46:55 2026-02-09 00:46:55,847 [omego.extern] INFO Executing : omero config get --show-password
00:46:57 2026-02-09 00:46:57,848 [omego.extern] INFO Completed [2.001 s]
00:46:57 2026-02-09 00:46:57,848 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:46:57 2026-02-09 00:46:57,848 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
00:46:57 2026-02-09 00:46:57,853 [omego.extern] INFO Completed [0.006 s]
00:46:57 2026-02-09 00:46:57,854 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.11\n'
00:46:57 2026-02-09 00:46:57,854 [ omego.db] INFO psql version: psql (PostgreSQL) 16.11
00:46:57
00:46:57 2026-02-09 00:46:57,854 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:46:57 2026-02-09 00:46:57,854 [omego.extern] INFO Executing : omero config get --show-password
00:46:59 2026-02-09 00:46:59,849 [omego.extern] INFO Completed [1.995 s]
00:46:59 2026-02-09 00:46:59,849 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:46:59 2026-02-09 00:46:59,849 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
00:46:59 2026-02-09 00:46:59,858 [omego.extern] INFO Completed [0.009 s]
00:46:59 2026-02-09 00:46:59,859 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.10") at port "5432".\n'
00:46:59 2026-02-09 00:46:59,859 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:46:59 2026-02-09 00:46:59,859 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:46:59 2026-02-09 00:46:59,859 [omego.extern] INFO Executing : omero config get --show-password
00:47:01 2026-02-09 00:47:01,780 [omego.extern] INFO Completed [1.921 s]
00:47:01 2026-02-09 00:47:01,780 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:47:01 2026-02-09 00:47:01,780 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:47:01 2026-02-09 00:47:01,790 [omego.extern] INFO Completed [0.010 s]
00:47:01 2026-02-09 00:47:01,790 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
00:47:01 2026-02-09 00:47:01,790 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
00:47:01 2026-02-09 00:47:01,791 [ omego.db] INFO Database is already at OMERO5.4__0
00:47:01 + export LANG=en_US.UTF-8
00:47:01 + LANG=en_US.UTF-8
00:47:01 + export LANGUAGE=en_US:en
00:47:01 + LANGUAGE=en_US:en
00:47:01 + export LC_ALL=en_US.UTF-8
00:47:01 + LC_ALL=en_US.UTF-8
00:47:01 + BUILD_ID=DONT_KILL_ME
00:47:01 + omero admin start
00:47:06 No descriptor given. Using etc/grid/default.xml
00:47:14 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
00:47:14 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
00:47:14 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
00:47:14 Waiting on startup. Use CTRL-C to exit
00:47:15 + omero admin waitup
00:47:16 Waiting on startup. Use CTRL-C to exit
00:47:17 + omero admin diagnostics
00:47:19
00:47:19 ================================================================================
00:47:19 OMERO Diagnostics (admin)
00:47:19 ================================================================================
00:47:19
00:47:19 Commands: java -version 17.0.17 (/usr/bin/java)
00:47:19 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
00:47:19 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
00:47:19 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
00:47:19 Commands: psql --version 16.11 (/usr/bin/psql)
00:47:19 Commands: openssl version 3.5.11 (/usr/bin/openssl)
00:47:19
00:47:19 Component: OMERO.py 5.22.0.dev0
00:47:19 Component: OMERO.server 5.6.3-593-5d52e90076-ice36-b48
00:47:19
00:47:19 Server: icegridnode running
00:47:19 Server: Blitz-0 active (pid = 119449, enabled)
00:47:19 Server: Indexer-0 activating (enabled)
00:47:19 Server: OMERO.Glacier2 active (pid = 119482, enabled)
00:47:19 Server: OMERO.IceStorm active (pid = 119509, enabled)
00:47:19 Server: Processor-0 active (pid = 119498, enabled)
00:47:19 Server: Tables-0 active (pid = 119510, enabled)
00:47:19
00:47:19 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
00:47:19 Log files: Blitz-0.log 30.5 KB errors=0 warnings=1
00:47:19 Log files: DropBox.log n/a
00:47:19 Log files: FileServer.log n/a
00:47:19 Log files: Indexer-0.log 358 B
00:47:19 Log files: MonitorServer.log n/a
00:47:19 Log files: Processor-0.log 735 B
00:47:19 Log files: Tables-0.log 961 B
00:47:19 Log files: TestDropBox.log n/a
00:47:19 Log files: master.err empty
00:47:19 Log files: master.out 30.1 KB
00:47:19 Log files: Total size 0.06 MB
00:47:19
00:47:19
00:47:19 Environment:OMERO_HOME=(unset)
00:47:19 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:47:19 Environment:OMERO_NODE=(unset)
00:47:19 Environment:OMERO_MASTER=(unset)
00:47:19 Environment:OMERO_USERDIR=(unset)
00:47:19 Environment:OMERO_TMPDIR=(unset)
00:47:19 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:47:19 Environment:PYTHONPATH=(unset)
00:47:19 Environment:ICE_HOME=/opt/ice-3.6.5
00:47:19 Environment:LD_LIBRARY_PATH=(unset)
00:47:19 Environment:DYLD_LIBRARY_PATH=(unset)
00:47:19
00:47:19 OMERO SSL port:4064
00:47:19 OMERO TCP port:4063
00:47:19 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
00:47:19 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
00:47:19
00:47:19 JVM settings: Blitz-${index} -Xmx7200m
00:47:19 JVM settings: Indexer-${index} -Xmx4800m
00:47:19 JVM settings: PixelData-${index} -Xmx7200m
00:47:19 JVM settings: Repository-${index} -Xmx4800m
00:47:19
00:47:19 Jar: lib/server/formats-api.jar Bio-Formats API 8.5.0-SNAPSHOT 9 February 2026 e6cdc5972681085de95798447ab77a74f26527c7
00:47:19 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.5.0-SNAPSHOT 9 February 2026 e6cdc5972681085de95798447ab77a74f26527c7
00:47:19 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.5.0-SNAPSHOT 9 February 2026 e6cdc5972681085de95798447ab77a74f26527c7
00:47:19 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3-SNAPSHOT 9 February 2026 933d30728209bcccb1225c84eb08f2033a809ec4
00:47:19 Jar: lib/server/ome-common.jar OME Common Java 6.1.3-SNAPSHOT 9 February 2026 933d30728209bcccb1225c84eb08f2033a809ec4
00:47:19 Jar: lib/server/ome-jai.jar OME JAI 0.1.6-SNAPSHOT 9 February 2026 933d30728209bcccb1225c84eb08f2033a809ec4
00:47:19 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.5-SNAPSHOT 9 February 2026 933d30728209bcccb1225c84eb08f2033a809ec4
00:47:19 Jar: lib/server/ome-poi.jar OME POI 5.3.11-SNAPSHOT 9 February 2026 933d30728209bcccb1225c84eb08f2033a809ec4
00:47:19 Jar: lib/server/ome-xml.jar OME XML library 6.5.4-SNAPSHOT 9 February 2026 933d30728209bcccb1225c84eb08f2033a809ec4
00:47:19 Jar: lib/server/omero-blitz.jar jar 5.8.5-SNAPSHOT
00:47:19 Jar: lib/server/omero-common.jar jar 5.7.5-SNAPSHOT
00:47:19 Jar: lib/server/omero-gateway.jar jar 5.10.6-SNAPSHOT
00:47:19 Jar: lib/server/omero-model.jar jar 5.7.5-SNAPSHOT
00:47:19 Jar: lib/server/omero-renderer.jar jar 5.6.5-SNAPSHOT
00:47:19 Jar: lib/server/omero-romio.jar jar 5.8.5-SNAPSHOT
00:47:19 Jar: lib/server/omero-server.jar jar 5.7.5-SNAPSHOT
00:47:19 Jar: lib/server/omero-zarr-pixel-buffer-0.6.2-SNAPSHOT.jar OMERO Zarr Pixel Buffer 0.6.2-SNAPSHOT 02da221b280ba2c1c9227baa13b0a7e02a41000c
00:47:19 + deactivate
00:47:19 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:47:19 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:47:19 + export PATH
00:47:19 + unset _OLD_VIRTUAL_PATH
00:47:19 + '[' -n '' ']'
00:47:19 + hash -r
00:47:19 + '[' -n '' ']'
00:47:19 + unset VIRTUAL_ENV
00:47:19 + unset VIRTUAL_ENV_PROMPT
00:47:19 + '[' '!' '' = nondestructive ']'
00:47:19 + unset -f deactivate
00:47:19 Finished: SUCCESS
