00:44:36 Started by upstream project "Trigger" build number 78
00:44:36 originally caused by:
00:44:36 Started by timer
00:44:36 Running as SYSTEM
00:44:36 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
00:44:36 [OMERO-server] $ /bin/bash -xe /tmp/jenkins842805472287266040.sh
00:44:36 + source /home/settings.env
00:44:36 ++ OMERO_DB_HOST=pg
00:44:36 ++ OMERO_DB_USER=postgres
00:44:36 ++ OMERO_DB_PASS=
00:44:36 ++ OMERO_ROOT_PASS=omero
00:44:36 ++ OMERO_DATA_DIR=/OMERO
00:44:36 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:44:36 + OMERO_DB_NAME=OMERO-server
00:44:36 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:44:36 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:44:36 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:44:36 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:44:36 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
00:44:36 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:44:36 ++ deactivate nondestructive
00:44:36 ++ '[' -n '' ']'
00:44:36 ++ '[' -n '' ']'
00:44:36 ++ hash -r
00:44:36 ++ '[' -n '' ']'
00:44:36 ++ unset VIRTUAL_ENV
00:44:36 ++ unset VIRTUAL_ENV_PROMPT
00:44:36 ++ '[' '!' nondestructive = nondestructive ']'
00:44:36 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:44:36 ++ export VIRTUAL_ENV
00:44:36 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:44:36 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:44:36 ++ export PATH
00:44:36 ++ '[' -n '' ']'
00:44:36 ++ '[' -z '' ']'
00:44:36 ++ _OLD_VIRTUAL_PS1=
00:44:36 ++ PS1='(.venv3) '
00:44:36 ++ export PS1
00:44:36 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:44:36 ++ export VIRTUAL_ENV_PROMPT
00:44:36 ++ hash -r
00:44:36 + omero admin stop
00:44:38 Waiting on shutdown. Use CTRL-C to exit
00:44:38 .+ sleep 5
00:44:53 + deactivate
00:44:53 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:44:53 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:44:53 + export PATH
00:44:53 + unset _OLD_VIRTUAL_PATH
00:44:53 + '[' -n '' ']'
00:44:53 + hash -r
00:44:53 + '[' -n '' ']'
00:44:53 + unset VIRTUAL_ENV
00:44:53 + unset VIRTUAL_ENV_PROMPT
00:44:53 + '[' '!' '' = nondestructive ']'
00:44:53 + unset -f deactivate
00:44:53 + rm -rf /home/omero/workspace/OMERO-server/.venv3
00:44:54 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
00:44:58 + '[' false = true ']'
00:44:58 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
00:44:58 Skipping PURGE_DATA:CleanDbAndRepo
00:44:58 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.5-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.22.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.31.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
00:45:00 Copied 1 artifact from "OMERO-build" build number 55
00:45:00 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 51
00:45:00 Copied 2 artifacts from "OMERO-build-build" build number 55
00:45:00 Copied 1 artifact from "OMERO-zarr-pixel-buffer-build" build number 49
00:45:00 [OMERO-server] $ /bin/bash -xe /tmp/jenkins270185853261139094.sh
00:45:00 + source /home/settings.env
00:45:00 ++ OMERO_DB_HOST=pg
00:45:00 ++ OMERO_DB_USER=postgres
00:45:00 ++ OMERO_DB_PASS=
00:45:00 ++ OMERO_ROOT_PASS=omero
00:45:00 ++ OMERO_DATA_DIR=/OMERO
00:45:00 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:45:00 + OMERO_DB_NAME=OMERO-server
00:45:00 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:45:00 + mkdir -p /home/omero/omero-server-data
00:45:00 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:45:00 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:45:00 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:45:00 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:45:00 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:45:00 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:45:00 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:45:00 ++ ls OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55.zip
00:45:00 + ZIP=OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55.zip
00:45:00 + '[' '!' -z '' ']'
00:45:00 + DIST=OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55
00:45:00 + unzip OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55.zip
00:45:00 Archive: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55.zip
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/etc/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/etc/blitz/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/etc/grid/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/etc/profiles/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/etc/templates/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/etc/templates/error/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/etc/templates/grid/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/lib/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/lib/client/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/lib/scripts/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/lib/scripts/luts/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/lib/scripts/luts/janelia/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/lib/scripts/luts/matplotlib/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/lib/scripts/luts/ncsa_paledit/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/lib/scripts/luts/seaborn/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/lib/scripts/luts/wcif/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/lib/scripts/omero/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/lib/scripts/omero/analysis_scripts/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/lib/scripts/omero/annotation_scripts/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/lib/scripts/omero/export_scripts/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/lib/scripts/omero/figure_scripts/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/lib/scripts/omero/import_scripts/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/lib/scripts/omero/util_scripts/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/lib/server/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/share/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/share/licenses/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/misc/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO3A__1/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO3A__10/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO3A__11/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO3A__2/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO3A__3/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO3A__4/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO3A__5/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO3A__6/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO3A__7/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO3A__8/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO3A__9/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO3__4/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO3__5/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO3__6/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO3__7/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO4.1__0/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO4.2__0/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO4.2__0/t/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO4.3__0/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO4.4__0/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO4__0/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO5.0__0/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO5.1__1/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO5.2__0/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO5.3__0/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO5.4DEV__1/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO5.4DEV__2/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO5.4DEV__3/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO5.4__0/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/var/
00:45:00 creating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/var/tmp/
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/LICENSE.txt
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/etc/backup.cfg
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/etc/blitz/mail-senders.example
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/etc/blitz/mail-server.example
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/etc/build.properties
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/etc/env.bat
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/etc/env.sh
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/etc/hibernate.properties
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/etc/ice.config
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/etc/logback-cli.xml
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/etc/logback-indexing-cli.xml
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/etc/logback-indexing.xml
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/etc/logback.xml
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/etc/mime.types
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/etc/node1.cfg
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/etc/node2.cfg
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/etc/omero.properties
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/etc/profiles/psql
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/etc/rollover.cfg
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/etc/templates/Windows.cfg
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/etc/templates/error/maintainance.html
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/etc/templates/grid/README
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/etc/templates/grid/default.xml
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/etc/templates/grid/templates.xml
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/etc/templates/grid/windefault.xml
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/etc/templates/ice.config
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/etc/templates/internal.cfg
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/etc/templates/master.cfg
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/etc/templates/robot.template
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/etc/testdropbox.config
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/history.rst
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/lib/client/OMEZarrReader.jar
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/lib/client/accessors-smart.jar
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/lib/client/activation.jar
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/lib/client/aggdesigner-algorithm.jar
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/lib/client/aircompressor.jar
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/lib/client/antlr.jar
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/lib/client/aopalliance.jar
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/lib/client/apiguardian-api.jar
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/lib/client/asm.jar
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/lib/client/avatica-core.jar
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/lib/client/avatica-metrics.jar
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/lib/client/aws-java-sdk-core.jar
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/lib/client/aws-java-sdk-kms.jar
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/lib/client/aws-java-sdk-s3.jar
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/lib/client/base.jar
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/lib/client/batik-anim.jar
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/lib/client/batik-awt-util.jar
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/lib/client/batik-bridge.jar
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/lib/client/batik-codec.jar
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/lib/client/batik-constants.jar
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/lib/client/batik-css.jar
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/lib/client/batik-dom.jar
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/lib/client/batik-ext.jar
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/lib/client/batik-gvt.jar
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/lib/client/batik-i18n.jar
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/lib/client/batik-parser.jar
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/lib/client/batik-script.jar
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/lib/client/batik-shared-resources.jar
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/lib/client/batik-svg-dom.jar
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/lib/client/batik-svggen.jar
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/lib/client/batik-transcoder.jar
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/lib/client/batik-util.jar
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/lib/client/batik-xml.jar
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/lib/client/btm.jar
00:45:00 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/lib/client/calcite-core.jar
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00:45:02 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
00:45:02 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
00:45:02 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
00:45:02 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
00:45:02 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
00:45:02 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
00:45:02 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
00:45:02 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
00:45:02 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
00:45:02 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
00:45:02 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
00:45:02 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
00:45:02 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
00:45:02 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
00:45:02 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
00:45:02 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
00:45:02 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
00:45:02 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
00:45:02 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
00:45:02 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
00:45:02 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
00:45:02 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
00:45:02 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO5.4__0/psql-footer.sql
00:45:02 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO5.4__0/psql-header.sql
00:45:02 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO5.4__0/schema.sql
00:45:02 inflating: OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55/sql/psql/OMERO5.4__0/views.sql
00:45:02 + rm -f OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55.zip
00:45:02 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-594-46bb7eb0b7-ice36-b55 /home/omero/workspace/OMERO-server/OMERO.server
00:45:02 + rm -rf /home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-core.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-kms.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-annotations.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-core.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-databind.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-classic.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-core.jar
00:45:02 + awsSdkVersion=2.34.6
00:45:02 + jacksonVersion=2.20.0
00:45:02 + logbackVersion=1.3.14
00:45:02 + zarrJavaVersion=0.0.10
00:45:02 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/s3/2.34.6/s3-2.34.6.jar
00:45:02 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:02 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:02 --2026-02-16 00:45:02-- https://repo1.maven.org/maven2/software/amazon/awssdk/s3/2.34.6/s3-2.34.6.jar
00:45:02 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:45:02 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:02 HTTP request sent, awaiting response... 200 OK
00:45:02 Length: 4083366 (3.9M) [application/java-archive]
00:45:02 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3-2.34.6.jar’
00:45:02
00:45:02 0K .......... .......... .......... .......... .......... 1% 36.9M 0s
00:45:02 50K .......... .......... .......... .......... .......... 2% 3.59M 1s
00:45:02 100K .......... .......... .......... .......... .......... 3% 3.98M 1s
00:45:02 150K .......... .......... .......... .......... .......... 5% 36.9M 1s
00:45:02 200K .......... .......... .......... .......... .......... 6% 172M 0s
00:45:02 250K .......... .......... .......... .......... .......... 7% 68.6M 0s
00:45:02 300K .......... .......... .......... .......... .......... 8% 58.0M 0s
00:45:02 350K .......... .......... .......... .......... .......... 10% 4.59M 0s
00:45:02 400K .......... .......... .......... .......... .......... 11% 33.1M 0s
00:45:02 450K .......... .......... .......... .......... .......... 12% 78.9M 0s
00:45:02 500K .......... .......... .......... .......... .......... 13% 55.0M 0s
00:45:02 550K .......... .......... .......... .......... .......... 15% 312M 0s
00:45:02 600K .......... .......... .......... .......... .......... 16% 4.64M 0s
00:45:02 650K .......... .......... .......... .......... .......... 17% 23.8M 0s
00:45:02 700K .......... .......... .......... .......... .......... 18% 121M 0s
00:45:02 750K .......... .......... .......... .......... .......... 20% 82.9M 0s
00:45:02 800K .......... .......... .......... .......... .......... 21% 78.2M 0s
00:45:02 850K .......... .......... .......... .......... .......... 22% 4.95M 0s
00:45:02 900K .......... .......... .......... .......... .......... 23% 36.2M 0s
00:45:02 950K .......... .......... .......... .......... .......... 25% 46.1M 0s
00:45:02 1000K .......... .......... .......... .......... .......... 26% 63.5M 0s
00:45:02 1050K .......... .......... .......... .......... .......... 27% 87.3M 0s
00:45:02 1100K .......... .......... .......... .......... .......... 28% 4.95M 0s
00:45:02 1150K .......... .......... .......... .......... .......... 30% 22.8M 0s
00:45:02 1200K .......... .......... .......... .......... .......... 31% 46.4M 0s
00:45:02 1250K .......... .......... .......... .......... .......... 32% 127M 0s
00:45:02 1300K .......... .......... .......... .......... .......... 33% 69.6M 0s
00:45:02 1350K .......... .......... .......... .......... .......... 35% 5.25M 0s
00:45:02 1400K .......... .......... .......... .......... .......... 36% 23.0M 0s
00:45:02 1450K .......... .......... .......... .......... .......... 37% 29.0M 0s
00:45:02 1500K .......... .......... .......... .......... .......... 38% 17.5M 0s
00:45:02 1550K .......... .......... .......... .......... .......... 40% 27.2M 0s
00:45:02 1600K .......... .......... .......... .......... .......... 41% 9.55M 0s
00:45:02 1650K .......... .......... .......... .......... .......... 42% 22.3M 0s
00:45:02 1700K .......... .......... .......... .......... .......... 43% 26.3M 0s
00:45:02 1750K .......... .......... .......... .......... .......... 45% 19.4M 0s
00:45:02 1800K .......... .......... .......... .......... .......... 46% 35.2M 0s
00:45:02 1850K .......... .......... .......... .......... .......... 47% 24.3M 0s
00:45:02 1900K .......... .......... .......... .......... .......... 48% 10.6M 0s
00:45:02 1950K .......... .......... .......... .......... .......... 50% 15.7M 0s
00:45:02 2000K .......... .......... .......... .......... .......... 51% 19.3M 0s
00:45:02 2050K .......... .......... .......... .......... .......... 52% 31.5M 0s
00:45:02 2100K .......... .......... .......... .......... .......... 53% 8.50M 0s
00:45:02 2150K .......... .......... .......... .......... .......... 55% 40.8M 0s
00:45:02 2200K .......... .......... .......... .......... .......... 56% 19.2M 0s
00:45:02 2250K .......... .......... .......... .......... .......... 57% 18.8M 0s
00:45:02 2300K .......... .......... .......... .......... .......... 58% 31.9M 0s
00:45:02 2350K .......... .......... .......... .......... .......... 60% 26.4M 0s
00:45:02 2400K .......... .......... .......... .......... .......... 61% 10.8M 0s
00:45:02 2450K .......... .......... .......... .......... .......... 62% 15.3M 0s
00:45:02 2500K .......... .......... .......... .......... .......... 63% 27.8M 0s
00:45:02 2550K .......... .......... .......... .......... .......... 65% 21.1M 0s
00:45:02 2600K .......... .......... .......... .......... .......... 66% 26.4M 0s
00:45:02 2650K .......... .......... .......... .......... .......... 67% 8.13M 0s
00:45:02 2700K .......... .......... .......... .......... .......... 68% 22.2M 0s
00:45:02 2750K .......... .......... .......... .......... .......... 70% 22.7M 0s
00:45:02 2800K .......... .......... .......... .......... .......... 71% 25.9M 0s
00:45:02 2850K .......... .......... .......... .......... .......... 72% 25.5M 0s
00:45:02 2900K .......... .......... .......... .......... .......... 73% 8.21M 0s
00:45:02 2950K .......... .......... .......... .......... .......... 75% 29.4M 0s
00:45:02 3000K .......... .......... .......... .......... .......... 76% 30.1M 0s
00:45:02 3050K .......... .......... .......... .......... .......... 77% 26.6M 0s
00:45:02 3100K .......... .......... .......... .......... .......... 78% 17.5M 0s
00:45:02 3150K .......... .......... .......... .......... .......... 80% 8.53M 0s
00:45:02 3200K .......... .......... .......... .......... .......... 81% 29.8M 0s
00:45:02 3250K .......... .......... .......... .......... .......... 82% 28.9M 0s
00:45:02 3300K .......... .......... .......... .......... .......... 84% 24.5M 0s
00:45:02 3350K .......... .......... .......... .......... .......... 85% 28.0M 0s
00:45:02 3400K .......... .......... .......... .......... .......... 86% 11.0M 0s
00:45:02 3450K .......... .......... .......... .......... .......... 87% 13.2M 0s
00:45:02 3500K .......... .......... .......... .......... .......... 89% 19.3M 0s
00:45:02 3550K .......... .......... .......... .......... .......... 90% 28.8M 0s
00:45:02 3600K .......... .......... .......... .......... .......... 91% 28.0M 0s
00:45:02 3650K .......... .......... .......... .......... .......... 92% 12.3M 0s
00:45:02 3700K .......... .......... .......... .......... .......... 94% 13.5M 0s
00:45:02 3750K .......... .......... .......... .......... .......... 95% 18.4M 0s
00:45:02 3800K .......... .......... .......... .......... .......... 96% 21.8M 0s
00:45:02 3850K .......... .......... .......... .......... .......... 97% 28.4M 0s
00:45:02 3900K .......... .......... .......... .......... .......... 99% 13.9M 0s
00:45:02 3950K .......... .......... .......... ....... 100% 12.8M=0.2s
00:45:02
00:45:02 2026-02-16 00:45:02 (16.6 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3-2.34.6.jar’ saved [4083366/4083366]
00:45:02
00:45:02 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/auth/2.34.6/auth-2.34.6.jar
00:45:02 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:02 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:02 --2026-02-16 00:45:02-- https://repo1.maven.org/maven2/software/amazon/awssdk/auth/2.34.6/auth-2.34.6.jar
00:45:03 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:45:03 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:03 HTTP request sent, awaiting response... 200 OK
00:45:03 Length: 234962 (229K) [application/java-archive]
00:45:03 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/auth-2.34.6.jar’
00:45:03
00:45:03 0K .......... .......... .......... .......... .......... 21% 35.8M 0s
00:45:03 50K .......... .......... .......... .......... .......... 43% 3.60M 0s
00:45:03 100K .......... .......... .......... .......... .......... 65% 100M 0s
00:45:03 150K .......... .......... .......... .......... .......... 87% 3.69M 0s
00:45:03 200K .......... .......... ......... 100% 133M=0.03s
00:45:03
00:45:03 2026-02-16 00:45:03 (7.77 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/auth-2.34.6.jar’ saved [234962/234962]
00:45:03
00:45:03 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/aws-core/2.34.6/aws-core-2.34.6.jar
00:45:03 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:03 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:03 --2026-02-16 00:45:03-- https://repo1.maven.org/maven2/software/amazon/awssdk/aws-core/2.34.6/aws-core-2.34.6.jar
00:45:03 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:45:03 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:03 HTTP request sent, awaiting response... 200 OK
00:45:03 Length: 192161 (188K) [application/java-archive]
00:45:03 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-core-2.34.6.jar’
00:45:03
00:45:03 0K .......... .......... .......... .......... .......... 26% 3.58M 0s
00:45:03 50K .......... .......... .......... .......... .......... 53% 12.1M 0s
00:45:03 100K .......... .......... .......... .......... .......... 79% 4.46M 0s
00:45:03 150K .......... .......... .......... ....... 100% 13.0M=0.03s
00:45:03
00:45:03 2026-02-16 00:45:03 (5.82 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-core-2.34.6.jar’ saved [192161/192161]
00:45:03
00:45:03 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/sdk-core/2.34.6/sdk-core-2.34.6.jar
00:45:03 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:03 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:03 --2026-02-16 00:45:03-- https://repo1.maven.org/maven2/software/amazon/awssdk/sdk-core/2.34.6/sdk-core-2.34.6.jar
00:45:03 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:45:03 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:03 HTTP request sent, awaiting response... 200 OK
00:45:03 Length: 1037104 (1013K) [application/java-archive]
00:45:03 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/sdk-core-2.34.6.jar’
00:45:03
00:45:03 0K .......... .......... .......... .......... .......... 4% 26.7M 0s
00:45:03 50K .......... .......... .......... .......... .......... 9% 3.56M 0s
00:45:03 100K .......... .......... .......... .......... .......... 14% 130M 0s
00:45:03 150K .......... .......... .......... .......... .......... 19% 3.76M 0s
00:45:03 200K .......... .......... .......... .......... .......... 24% 88.9M 0s
00:45:03 250K .......... .......... .......... .......... .......... 29% 48.3M 0s
00:45:03 300K .......... .......... .......... .......... .......... 34% 315M 0s
00:45:03 350K .......... .......... .......... .......... .......... 39% 55.5M 0s
00:45:03 400K .......... .......... .......... .......... .......... 44% 4.38M 0s
00:45:03 450K .......... .......... .......... .......... .......... 49% 78.0M 0s
00:45:03 500K .......... .......... .......... .......... .......... 54% 53.8M 0s
00:45:03 550K .......... .......... .......... .......... .......... 59% 94.0M 0s
00:45:03 600K .......... .......... .......... .......... .......... 64% 101M 0s
00:45:03 650K .......... .......... .......... .......... .......... 69% 4.19M 0s
00:45:03 700K .......... .......... .......... .......... .......... 74% 130M 0s
00:45:03 750K .......... .......... .......... .......... .......... 78% 71.7M 0s
00:45:03 800K .......... .......... .......... .......... .......... 83% 54.7M 0s
00:45:03 850K .......... .......... .......... .......... .......... 88% 248M 0s
00:45:03 900K .......... .......... .......... .......... .......... 93% 4.22M 0s
00:45:03 950K .......... .......... .......... .......... .......... 98% 53.5M 0s
00:45:03 1000K .......... .. 100% 197M=0.07s
00:45:03
00:45:03 2026-02-16 00:45:03 (13.8 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/sdk-core-2.34.6.jar’ saved [1037104/1037104]
00:45:03
00:45:03 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/url-connection-client/2.34.6/url-connection-client-2.34.6.jar
00:45:03 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:03 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:03 --2026-02-16 00:45:03-- https://repo1.maven.org/maven2/software/amazon/awssdk/url-connection-client/2.34.6/url-connection-client-2.34.6.jar
00:45:04 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:45:04 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:04 HTTP request sent, awaiting response... 200 OK
00:45:04 Length: 33040 (32K) [application/java-archive]
00:45:04 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/url-connection-client-2.34.6.jar’
00:45:04
00:45:04 0K .......... .......... .......... .. 100% 10.8M=0.003s
00:45:04
00:45:04 2026-02-16 00:45:04 (10.8 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/url-connection-client-2.34.6.jar’ saved [33040/33040]
00:45:04
00:45:04 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/annotations/2.34.6/annotations-2.34.6.jar
00:45:04 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:04 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:04 --2026-02-16 00:45:04-- https://repo1.maven.org/maven2/software/amazon/awssdk/annotations/2.34.6/annotations-2.34.6.jar
00:45:04 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:45:04 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:04 HTTP request sent, awaiting response... 200 OK
00:45:04 Length: 13758 (13K) [application/java-archive]
00:45:04 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/annotations-2.34.6.jar’
00:45:04
00:45:04 0K .......... ... 100% 50.2M=0s
00:45:04
00:45:04 2026-02-16 00:45:04 (50.2 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/annotations-2.34.6.jar’ saved [13758/13758]
00:45:04
00:45:04 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/regions/2.34.6/regions-2.34.6.jar
00:45:04 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:04 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:04 --2026-02-16 00:45:04-- https://repo1.maven.org/maven2/software/amazon/awssdk/regions/2.34.6/regions-2.34.6.jar
00:45:04 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:45:04 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:04 HTTP request sent, awaiting response... 200 OK
00:45:04 Length: 962220 (940K) [application/java-archive]
00:45:04 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/regions-2.34.6.jar’
00:45:04
00:45:04 0K .......... .......... .......... .......... .......... 5% 36.6M 0s
00:45:04 50K .......... .......... .......... .......... .......... 10% 3.59M 0s
00:45:04 100K .......... .......... .......... .......... .......... 15% 3.90M 0s
00:45:04 150K .......... .......... .......... .......... .......... 21% 47.0M 0s
00:45:04 200K .......... .......... .......... .......... .......... 26% 151M 0s
00:45:04 250K .......... .......... .......... .......... .......... 31% 64.6M 0s
00:45:04 300K .......... .......... .......... .......... .......... 37% 65.8M 0s
00:45:04 350K .......... .......... .......... .......... .......... 42% 4.12M 0s
00:45:04 400K .......... .......... .......... .......... .......... 47% 160M 0s
00:45:04 450K .......... .......... .......... .......... .......... 53% 58.9M 0s
00:45:04 500K .......... .......... .......... .......... .......... 58% 77.4M 0s
00:45:04 550K .......... .......... .......... .......... .......... 63% 98.2M 0s
00:45:04 600K .......... .......... .......... .......... .......... 69% 4.19M 0s
00:45:04 650K .......... .......... .......... .......... .......... 74% 67.7M 0s
00:45:04 700K .......... .......... .......... .......... .......... 79% 298M 0s
00:45:04 750K .......... .......... .......... .......... .......... 85% 70.7M 0s
00:45:04 800K .......... .......... .......... .......... .......... 90% 59.2M 0s
00:45:04 850K .......... .......... .......... .......... .......... 95% 4.30M 0s
00:45:04 900K .......... .......... .......... ......... 100% 131M=0.07s
00:45:04
00:45:04 2026-02-16 00:45:04 (13.1 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/regions-2.34.6.jar’ saved [962220/962220]
00:45:04
00:45:04 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/identity-spi/2.34.6/identity-spi-2.34.6.jar
00:45:04 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:04 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:04 --2026-02-16 00:45:04-- https://repo1.maven.org/maven2/software/amazon/awssdk/identity-spi/2.34.6/identity-spi-2.34.6.jar
00:45:04 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:45:04 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:05 HTTP request sent, awaiting response... 200 OK
00:45:05 Length: 30963 (30K) [application/java-archive]
00:45:05 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/identity-spi-2.34.6.jar’
00:45:05
00:45:05 0K .......... .......... .......... 100% 11.4M=0.003s
00:45:05
00:45:05 2026-02-16 00:45:05 (11.4 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/identity-spi-2.34.6.jar’ saved [30963/30963]
00:45:05
00:45:05 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/utils/2.34.6/utils-2.34.6.jar
00:45:05 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:05 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:05 --2026-02-16 00:45:05-- https://repo1.maven.org/maven2/software/amazon/awssdk/utils/2.34.6/utils-2.34.6.jar
00:45:05 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:45:05 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:05 HTTP request sent, awaiting response... 200 OK
00:45:05 Length: 241618 (236K) [application/java-archive]
00:45:05 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/utils-2.34.6.jar’
00:45:05
00:45:05 0K .......... .......... .......... .......... .......... 21% 32.7M 0s
00:45:05 50K .......... .......... .......... .......... .......... 42% 3.54M 0s
00:45:05 100K .......... .......... .......... .......... .......... 63% 154M 0s
00:45:05 150K .......... .......... .......... .......... .......... 84% 3.67M 0s
00:45:05 200K .......... .......... .......... ..... 100% 142M=0.03s
00:45:05
00:45:05 2026-02-16 00:45:05 (7.90 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/utils-2.34.6.jar’ saved [241618/241618]
00:45:05
00:45:05 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/http-client-spi/2.34.6/http-client-spi-2.34.6.jar
00:45:05 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:05 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:05 --2026-02-16 00:45:05-- https://repo1.maven.org/maven2/software/amazon/awssdk/http-client-spi/2.34.6/http-client-spi-2.34.6.jar
00:45:05 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:45:05 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:05 HTTP request sent, awaiting response... 200 OK
00:45:05 Length: 91685 (90K) [application/java-archive]
00:45:05 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/http-client-spi-2.34.6.jar’
00:45:05
00:45:05 0K .......... .......... .......... .......... .......... 55% 32.7M 0s
00:45:05 50K .......... .......... .......... ......... 100% 2.83M=0.02s
00:45:05
00:45:05 2026-02-16 00:45:05 (5.77 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/http-client-spi-2.34.6.jar’ saved [91685/91685]
00:45:05
00:45:05 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/retries/2.34.6/retries-2.34.6.jar
00:45:05 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:05 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:05 --2026-02-16 00:45:05-- https://repo1.maven.org/maven2/software/amazon/awssdk/retries/2.34.6/retries-2.34.6.jar
00:45:05 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:45:05 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:05 HTTP request sent, awaiting response... 200 OK
00:45:05 Length: 66309 (65K) [application/java-archive]
00:45:05 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/retries-2.34.6.jar’
00:45:05
00:45:05 0K .......... .......... .......... .......... .......... 77% 37.5M 0s
00:45:05 50K .......... .... 100% 194M=0.001s
00:45:05
00:45:05 2026-02-16 00:45:05 (46.0 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/retries-2.34.6.jar’ saved [66309/66309]
00:45:05
00:45:05 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-core/2.20.0/jackson-core-2.20.0.jar
00:45:05 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:05 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:05 --2026-02-16 00:45:05-- https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-core/2.20.0/jackson-core-2.20.0.jar
00:45:06 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:45:06 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:06 HTTP request sent, awaiting response... 200 OK
00:45:06 Length: 593063 (579K) [application/java-archive]
00:45:06 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-core-2.20.0.jar’
00:45:06
00:45:06 0K .......... .......... .......... .......... .......... 8% 35.2M 0s
00:45:06 50K .......... .......... .......... .......... .......... 17% 3.57M 0s
00:45:06 100K .......... .......... .......... .......... .......... 25% 4.01M 0s
00:45:06 150K .......... .......... .......... .......... .......... 34% 36.2M 0s
00:45:06 200K .......... .......... .......... .......... .......... 43% 222M 0s
00:45:06 250K .......... .......... .......... .......... .......... 51% 65.1M 0s
00:45:06 300K .......... .......... .......... .......... .......... 60% 54.9M 0s
00:45:06 350K .......... .......... .......... .......... .......... 69% 4.66M 0s
00:45:06 400K .......... .......... .......... .......... .......... 77% 32.3M 0s
00:45:06 450K .......... .......... .......... .......... .......... 86% 76.0M 0s
00:45:06 500K .......... .......... .......... .......... .......... 94% 57.0M 0s
00:45:06 550K .......... .......... ......... 100% 423M=0.04s
00:45:06
00:45:06 2026-02-16 00:45:06 (12.9 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-core-2.20.0.jar’ saved [593063/593063]
00:45:06
00:45:06 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.20.0/jackson-databind-2.20.0.jar
00:45:06 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:06 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:06 --2026-02-16 00:45:06-- https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.20.0/jackson-databind-2.20.0.jar
00:45:06 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:45:06 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:06 HTTP request sent, awaiting response... 200 OK
00:45:06 Length: 1688471 (1.6M) [application/java-archive]
00:45:06 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-databind-2.20.0.jar’
00:45:06
00:45:06 0K .......... .......... .......... .......... .......... 3% 34.6M 0s
00:45:06 50K .......... .......... .......... .......... .......... 6% 3.58M 0s
00:45:06 100K .......... .......... .......... .......... .......... 9% 90.2M 0s
00:45:06 150K .......... .......... .......... .......... .......... 12% 3.72M 0s
00:45:06 200K .......... .......... .......... .......... .......... 15% 178M 0s
00:45:06 250K .......... .......... .......... .......... .......... 18% 70.8M 0s
00:45:06 300K .......... .......... .......... .......... .......... 21% 58.9M 0s
00:45:06 350K .......... .......... .......... .......... .......... 24% 286M 0s
00:45:06 400K .......... .......... .......... .......... .......... 27% 4.14M 0s
00:45:06 450K .......... .......... .......... .......... .......... 30% 260M 0s
00:45:06 500K .......... .......... .......... .......... .......... 33% 68.2M 0s
00:45:06 550K .......... .......... .......... .......... .......... 36% 53.3M 0s
00:45:06 600K .......... .......... .......... .......... .......... 39% 118M 0s
00:45:06 650K .......... .......... .......... .......... .......... 42% 4.26M 0s
00:45:06 700K .......... .......... .......... .......... .......... 45% 305M 0s
00:45:06 750K .......... .......... .......... .......... .......... 48% 66.5M 0s
00:45:06 800K .......... .......... .......... .......... .......... 51% 52.8M 0s
00:45:06 850K .......... .......... .......... .......... .......... 54% 109M 0s
00:45:06 900K .......... .......... .......... .......... .......... 57% 4.04M 0s
00:45:06 950K .......... .......... .......... .......... .......... 60% 142M 0s
00:45:06 1000K .......... .......... .......... .......... .......... 63% 56.9M 0s
00:45:06 1050K .......... .......... .......... .......... .......... 66% 119M 0s
00:45:06 1100K .......... .......... .......... .......... .......... 69% 77.3M 0s
00:45:06 1150K .......... .......... .......... .......... .......... 72% 5.20M 0s
00:45:06 1200K .......... .......... .......... .......... .......... 75% 20.4M 0s
00:45:06 1250K .......... .......... .......... .......... .......... 78% 50.2M 0s
00:45:06 1300K .......... .......... .......... .......... .......... 81% 56.6M 0s
00:45:06 1350K .......... .......... .......... .......... .......... 84% 134M 0s
00:45:06 1400K .......... .......... .......... .......... .......... 87% 5.35M 0s
00:45:06 1450K .......... .......... .......... .......... .......... 90% 15.2M 0s
00:45:06 1500K .......... .......... .......... .......... .......... 94% 17.4M 0s
00:45:06 1550K .......... .......... .......... .......... .......... 97% 17.6M 0s
00:45:06 1600K .......... .......... .......... .......... ........ 100% 24.2M=0.1s
00:45:06
00:45:06 2026-02-16 00:45:06 (15.1 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-databind-2.20.0.jar’ saved [1688471/1688471]
00:45:06
00:45:06 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/datatype/jackson-datatype-jdk8/2.20.0/jackson-datatype-jdk8-2.20.0.jar
00:45:06 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:06 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:06 --2026-02-16 00:45:06-- https://repo1.maven.org/maven2/com/fasterxml/jackson/datatype/jackson-datatype-jdk8/2.20.0/jackson-datatype-jdk8-2.20.0.jar
00:45:06 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:45:06 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:06 HTTP request sent, awaiting response... 200 OK
00:45:06 Length: 36400 (36K) [application/java-archive]
00:45:06 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-datatype-jdk8-2.20.0.jar’
00:45:06
00:45:06 0K .......... .......... .......... ..... 100% 10.9M=0.003s
00:45:06
00:45:06 2026-02-16 00:45:06 (10.9 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-datatype-jdk8-2.20.0.jar’ saved [36400/36400]
00:45:06
00:45:06 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-annotations/2.20/jackson-annotations-2.20.jar
00:45:06 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:06 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:06 --2026-02-16 00:45:06-- https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-annotations/2.20/jackson-annotations-2.20.jar
00:45:06 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:45:06 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:07 HTTP request sent, awaiting response... 200 OK
00:45:07 Length: 79195 (77K) [application/java-archive]
00:45:07 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-annotations-2.20.jar’
00:45:07
00:45:07 0K .......... .......... .......... .......... .......... 64% 34.8M 0s
00:45:07 50K .......... .......... ....... 100% 2.09M=0.01s
00:45:07
00:45:07 2026-02-16 00:45:07 (5.33 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-annotations-2.20.jar’ saved [79195/79195]
00:45:07
00:45:07 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar
00:45:07 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:07 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:07 --2026-02-16 00:45:07-- https://repo.maven.apache.org/maven2/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar
00:45:07 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:45:07 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.18.12|:443... connected.
00:45:07 HTTP request sent, awaiting response... 200 OK
00:45:07 Length: 277829 (271K) [application/java-archive]
00:45:07 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-classic-1.3.14.jar’
00:45:07
00:45:07 0K .......... .......... .......... .......... .......... 18% 33.0M 0s
00:45:07 50K .......... .......... .......... .......... .......... 36% 3.60M 0s
00:45:07 100K .......... .......... .......... .......... .......... 55% 72.8M 0s
00:45:07 150K .......... .......... .......... .......... .......... 73% 3.82M 0s
00:45:07 200K .......... .......... .......... .......... .......... 92% 247M 0s
00:45:07 250K .......... .......... . 100% 29.2M=0.03s
00:45:07
00:45:07 2026-02-16 00:45:07 (9.01 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-classic-1.3.14.jar’ saved [277829/277829]
00:45:07
00:45:07 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar
00:45:07 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:07 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:07 --2026-02-16 00:45:07-- https://repo.maven.apache.org/maven2/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar
00:45:07 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:45:07 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.18.12|:443... connected.
00:45:07 HTTP request sent, awaiting response... 200 OK
00:45:07 Length: 579673 (566K) [application/java-archive]
00:45:07 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-core-1.3.14.jar’
00:45:07
00:45:07 0K .......... .......... .......... .......... .......... 8% 32.7M 0s
00:45:07 50K .......... .......... .......... .......... .......... 17% 3.54M 0s
00:45:07 100K .......... .......... .......... .......... .......... 26% 3.95M 0s
00:45:07 150K .......... .......... .......... .......... .......... 35% 49.7M 0s
00:45:07 200K .......... .......... .......... .......... .......... 44% 147M 0s
00:45:07 250K .......... .......... .......... .......... .......... 52% 55.5M 0s
00:45:07 300K .......... .......... .......... .......... .......... 61% 62.0M 0s
00:45:07 350K .......... .......... .......... .......... .......... 70% 4.21M 0s
00:45:07 400K .......... .......... .......... .......... .......... 79% 245M 0s
00:45:07 450K .......... .......... .......... .......... .......... 88% 141M 0s
00:45:07 500K .......... .......... .......... .......... .......... 97% 35.6M 0s
00:45:07 550K .......... ...... 100% 268M=0.04s
00:45:07
00:45:07 2026-02-16 00:45:07 (12.5 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-core-1.3.14.jar’ saved [579673/579673]
00:45:07
00:45:07 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/dev/zarr/zarr-java/0.0.10/zarr-java-0.0.10.jar
00:45:07 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:07 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:07 --2026-02-16 00:45:07-- https://repo.maven.apache.org/maven2/dev/zarr/zarr-java/0.0.10/zarr-java-0.0.10.jar
00:45:07 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:45:07 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.18.12|:443... connected.
00:45:08 HTTP request sent, awaiting response... 200 OK
00:45:08 Length: 175836 (172K) [application/java-archive]
00:45:08 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zarr-java-0.0.10.jar’
00:45:08
00:45:08 0K .......... .......... .......... .......... .......... 29% 28.8M 0s
00:45:08 50K .......... .......... .......... .......... .......... 58% 3.61M 0s
00:45:08 100K .......... .......... .......... .......... .......... 87% 3.96M 0s
00:45:08 150K .......... .......... . 100% 23.9M=0.03s
00:45:08
00:45:08 2026-02-16 00:45:08 (5.89 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zarr-java-0.0.10.jar’ saved [175836/175836]
00:45:08
00:45:08 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
00:45:08 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:08 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:08 --2026-02-16 00:45:08-- https://repo.maven.apache.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
00:45:08 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:45:08 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
00:45:08 HTTP request sent, awaiting response... 200 OK
00:45:08 Length: 889211 (868K) [application/java-archive]
00:45:08 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’
00:45:08
00:45:08 0K .......... .......... .......... .......... .......... 5% 32.4M 0s
00:45:08 50K .......... .......... .......... .......... .......... 11% 3.60M 0s
00:45:08 100K .......... .......... .......... .......... .......... 17% 3.87M 0s
00:45:08 150K .......... .......... .......... .......... .......... 23% 51.1M 0s
00:45:08 200K .......... .......... .......... .......... .......... 28% 189M 0s
00:45:08 250K .......... .......... .......... .......... .......... 34% 39.6M 0s
00:45:08 300K .......... .......... .......... .......... .......... 40% 305M 0s
00:45:08 350K .......... .......... .......... .......... .......... 46% 4.08M 0s
00:45:08 400K .......... .......... .......... .......... .......... 51% 144M 0s
00:45:08 450K .......... .......... .......... .......... .......... 57% 269M 0s
00:45:08 500K .......... .......... .......... .......... .......... 63% 44.8M 0s
00:45:08 550K .......... .......... .......... .......... .......... 69% 62.6M 0s
00:45:08 600K .......... .......... .......... .......... .......... 74% 4.23M 0s
00:45:08 650K .......... .......... .......... .......... .......... 80% 83.8M 0s
00:45:08 700K .......... .......... .......... .......... .......... 86% 303M 0s
00:45:08 750K .......... .......... .......... .......... .......... 92% 64.7M 0s
00:45:08 800K .......... .......... .......... .......... .......... 97% 58.1M 0s
00:45:08 850K .......... ........ 100% 304M=0.06s
00:45:08
00:45:08 2026-02-16 00:45:08 (14.5 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’ saved [889211/889211]
00:45:08
00:45:08 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/org/apache/tika/tika-core/1.28.5/tika-core-1.28.5.jar
00:45:08 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:08 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:08 --2026-02-16 00:45:08-- https://repo.maven.apache.org/maven2/org/apache/tika/tika-core/1.28.5/tika-core-1.28.5.jar
00:45:08 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:45:08 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
00:45:08 HTTP request sent, awaiting response... 200 OK
00:45:08 Length: 736051 (719K) [application/java-archive]
00:45:08 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/tika-core-1.28.5.jar’
00:45:08
00:45:08 0K .......... .......... .......... .......... .......... 6% 34.9M 0s
00:45:08 50K .......... .......... .......... .......... .......... 13% 3.58M 0s
00:45:08 100K .......... .......... .......... .......... .......... 20% 3.90M 0s
00:45:08 150K .......... .......... .......... .......... .......... 27% 42.6M 0s
00:45:08 200K .......... .......... .......... .......... .......... 34% 254M 0s
00:45:08 250K .......... .......... .......... .......... .......... 41% 60.3M 0s
00:45:08 300K .......... .......... .......... .......... .......... 48% 65.1M 0s
00:45:08 350K .......... .......... .......... .......... .......... 55% 4.59M 0s
00:45:08 400K .......... .......... .......... .......... .......... 62% 34.6M 0s
00:45:08 450K .......... .......... .......... .......... .......... 69% 58.8M 0s
00:45:08 500K .......... .......... .......... .......... .......... 76% 65.3M 0s
00:45:08 550K .......... .......... .......... .......... .......... 83% 303M 0s
00:45:08 600K .......... .......... .......... .......... .......... 90% 4.58M 0s
00:45:08 650K .......... .......... .......... .......... .......... 97% 24.3M 0s
00:45:08 700K .......... ........ 100% 396M=0.06s
00:45:08
00:45:08 2026-02-16 00:45:08 (12.3 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/tika-core-1.28.5.jar’ saved [736051/736051]
00:45:08
00:45:08 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/squareup/okhttp/okhttp/2.7.5/okhttp-2.7.5.jar
00:45:08 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:08 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:08 --2026-02-16 00:45:08-- https://repo1.maven.org/maven2/com/squareup/okhttp/okhttp/2.7.5/okhttp-2.7.5.jar
00:45:08 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:45:08 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:08 HTTP request sent, awaiting response... 200 OK
00:45:09 Length: 331034 (323K) [application/java-archive]
00:45:09 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/okhttp-2.7.5.jar’
00:45:09
00:45:09 0K .......... .......... .......... .......... .......... 15% 32.7M 0s
00:45:09 50K .......... .......... .......... .......... .......... 30% 3.39M 0s
00:45:09 100K .......... .......... .......... .......... .......... 46% 79.0M 0s
00:45:09 150K .......... .......... .......... .......... .......... 61% 3.54M 0s
00:45:09 200K .......... .......... .......... .......... .......... 77% 110M 0s
00:45:09 250K .......... .......... .......... .......... .......... 92% 138M 0s
00:45:09 300K .......... .......... ... 100% 326M=0.03s
00:45:09
00:45:09 2026-02-16 00:45:09 (10.1 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/okhttp-2.7.5.jar’ saved [331034/331034]
00:45:09
00:45:09 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/github/luben/zstd-jni/1.5.5-7/zstd-jni-1.5.5-7.jar
00:45:09 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:09 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:09 --2026-02-16 00:45:09-- https://repo1.maven.org/maven2/com/github/luben/zstd-jni/1.5.5-7/zstd-jni-1.5.5-7.jar
00:45:09 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:45:09 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:09 HTTP request sent, awaiting response... 200 OK
00:45:09 Length: 6749842 (6.4M) [application/java-archive]
00:45:09 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zstd-jni-1.5.5-7.jar’
00:45:09
00:45:09 0K .......... .......... .......... .......... .......... 0% 3.43M 2s
00:45:09 50K .......... .......... .......... .......... .......... 1% 8.98M 1s
00:45:09 100K .......... .......... .......... .......... .......... 2% 4.56M 1s
00:45:09 150K .......... .......... .......... .......... .......... 3% 10.9M 1s
00:45:09 200K .......... .......... .......... .......... .......... 3% 9.12M 1s
00:45:09 250K .......... .......... .......... .......... .......... 4% 19.7M 1s
00:45:09 300K .......... .......... .......... .......... .......... 5% 13.1M 1s
00:45:09 350K .......... .......... .......... .......... .......... 6% 18.2M 1s
00:45:09 400K .......... .......... .......... .......... .......... 6% 18.4M 1s
00:45:09 450K .......... .......... .......... .......... .......... 7% 19.5M 1s
00:45:09 500K .......... .......... .......... .......... .......... 8% 19.8M 1s
00:45:09 550K .......... .......... .......... .......... .......... 9% 16.7M 1s
00:45:09 600K .......... .......... .......... .......... .......... 9% 15.0M 1s
00:45:09 650K .......... .......... .......... .......... .......... 10% 25.4M 1s
00:45:09 700K .......... .......... .......... .......... .......... 11% 15.5M 1s
00:45:09 750K .......... .......... .......... .......... .......... 12% 20.9M 1s
00:45:09 800K .......... .......... .......... .......... .......... 12% 15.7M 0s
00:45:09 850K .......... .......... .......... .......... .......... 13% 14.7M 0s
00:45:09 900K .......... .......... .......... .......... .......... 14% 24.6M 0s
00:45:09 950K .......... .......... .......... .......... .......... 15% 16.9M 0s
00:45:09 1000K .......... .......... .......... .......... .......... 15% 20.8M 0s
00:45:09 1050K .......... .......... .......... .......... .......... 16% 15.0M 0s
00:45:09 1100K .......... .......... .......... .......... .......... 17% 15.8M 0s
00:45:09 1150K .......... .......... .......... .......... .......... 18% 24.6M 0s
00:45:09 1200K .......... .......... .......... .......... .......... 18% 15.5M 0s
00:45:09 1250K .......... .......... .......... .......... .......... 19% 23.2M 0s
00:45:09 1300K .......... .......... .......... .......... .......... 20% 14.7M 0s
00:45:09 1350K .......... .......... .......... .......... .......... 21% 15.4M 0s
00:45:09 1400K .......... .......... .......... .......... .......... 21% 24.5M 0s
00:45:09 1450K .......... .......... .......... .......... .......... 22% 28.1M 0s
00:45:09 1500K .......... .......... .......... .......... .......... 23% 23.3M 0s
00:45:09 1550K .......... .......... .......... .......... .......... 24% 10.4M 0s
00:45:09 1600K .......... .......... .......... .......... .......... 25% 15.2M 0s
00:45:09 1650K .......... .......... .......... .......... .......... 25% 23.8M 0s
00:45:09 1700K .......... .......... .......... .......... .......... 26% 24.3M 0s
00:45:09 1750K .......... .......... .......... .......... .......... 27% 24.6M 0s
00:45:09 1800K .......... .......... .......... .......... .......... 28% 15.4M 0s
00:45:09 1850K .......... .......... .......... .......... .......... 28% 11.3M 0s
00:45:09 1900K .......... .......... .......... .......... .......... 29% 24.5M 0s
00:45:09 1950K .......... .......... .......... .......... .......... 30% 12.0M 0s
00:45:09 2000K .......... .......... .......... .......... .......... 31% 56.4M 0s
00:45:09 2050K .......... .......... .......... .......... .......... 31% 18.9M 0s
00:45:09 2100K .......... .......... .......... .......... .......... 32% 11.9M 0s
00:45:09 2150K .......... .......... .......... .......... .......... 33% 21.0M 0s
00:45:09 2200K .......... .......... .......... .......... .......... 34% 10.7M 0s
00:45:09 2250K .......... .......... .......... .......... .......... 34% 34.0M 0s
00:45:09 2300K .......... .......... .......... .......... .......... 35% 26.4M 0s
00:45:09 2350K .......... .......... .......... .......... .......... 36% 12.3M 0s
00:45:09 2400K .......... .......... .......... .......... .......... 37% 26.1M 0s
00:45:09 2450K .......... .......... .......... .......... .......... 37% 10.6M 0s
00:45:09 2500K .......... .......... .......... .......... .......... 38% 33.6M 0s
00:45:09 2550K .......... .......... .......... .......... .......... 39% 25.7M 0s
00:45:09 2600K .......... .......... .......... .......... .......... 40% 22.7M 0s
00:45:09 2650K .......... .......... .......... .......... .......... 40% 16.6M 0s
00:45:09 2700K .......... .......... .......... .......... .......... 41% 33.5M 0s
00:45:09 2750K .......... .......... .......... .......... .......... 42% 9.26M 0s
00:45:09 2800K .......... .......... .......... .......... .......... 43% 25.7M 0s
00:45:09 2850K .......... .......... .......... .......... .......... 43% 21.5M 0s
00:45:09 2900K .......... .......... .......... .......... .......... 44% 17.1M 0s
00:45:09 2950K .......... .......... .......... .......... .......... 45% 31.2M 0s
00:45:09 3000K .......... .......... .......... .......... .......... 46% 11.8M 0s
00:45:09 3050K .......... .......... .......... .......... .......... 47% 16.5M 0s
00:45:09 3100K .......... .......... .......... .......... .......... 47% 23.4M 0s
00:45:09 3150K .......... .......... .......... .......... .......... 48% 13.8M 0s
00:45:09 3200K .......... .......... .......... .......... .......... 49% 31.3M 0s
00:45:09 3250K .......... .......... .......... .......... .......... 50% 13.2M 0s
00:45:09 3300K .......... .......... .......... .......... .......... 50% 17.3M 0s
00:45:09 3350K .......... .......... .......... .......... .......... 51% 23.1M 0s
00:45:09 3400K .......... .......... .......... .......... .......... 52% 23.7M 0s
00:45:09 3450K .......... .......... .......... .......... .......... 53% 15.5M 0s
00:45:09 3500K .......... .......... .......... .......... .......... 53% 14.1M 0s
00:45:09 3550K .......... .......... .......... .......... .......... 54% 16.4M 0s
00:45:09 3600K .......... .......... .......... .......... .......... 55% 23.3M 0s
00:45:09 3650K .......... .......... .......... .......... .......... 56% 13.7M 0s
00:45:09 3700K .......... .......... .......... .......... .......... 56% 34.3M 0s
00:45:09 3750K .......... .......... .......... .......... .......... 57% 13.2M 0s
00:45:09 3800K .......... .......... .......... .......... .......... 58% 22.5M 0s
00:45:09 3850K .......... .......... .......... .......... .......... 59% 13.1M 0s
00:45:09 3900K .......... .......... .......... .......... .......... 59% 16.2M 0s
00:45:09 3950K .......... .......... .......... .......... .......... 60% 26.2M 0s
00:45:09 4000K .......... .......... .......... .......... .......... 61% 16.5M 0s
00:45:09 4050K .......... .......... .......... .......... .......... 62% 20.4M 0s
00:45:09 4100K .......... .......... .......... .......... .......... 62% 13.8M 0s
00:45:09 4150K .......... .......... .......... .......... .......... 63% 16.2M 0s
00:45:09 4200K .......... .......... .......... .......... .......... 64% 34.0M 0s
00:45:09 4250K .......... .......... .......... .......... .......... 65% 13.9M 0s
00:45:09 4300K .......... .......... .......... .......... .......... 65% 19.2M 0s
00:45:09 4350K .......... .......... .......... .......... .......... 66% 13.5M 0s
00:45:09 4400K .......... .......... .......... .......... .......... 67% 18.6M 0s
00:45:09 4450K .......... .......... .......... .......... .......... 68% 23.5M 0s
00:45:09 4500K .......... .......... .......... .......... .......... 69% 17.6M 0s
00:45:09 4550K .......... .......... .......... .......... .......... 69% 22.1M 0s
00:45:09 4600K .......... .......... .......... .......... .......... 70% 29.2M 0s
00:45:09 4650K .......... .......... .......... .......... .......... 71% 9.72M 0s
00:45:09 4700K .......... .......... .......... .......... .......... 72% 23.9M 0s
00:45:09 4750K .......... .......... .......... .......... .......... 72% 17.5M 0s
00:45:09 4800K .......... .......... .......... .......... .......... 73% 21.5M 0s
00:45:09 4850K .......... .......... .......... .......... .......... 74% 28.2M 0s
00:45:09 4900K .......... .......... .......... .......... .......... 75% 13.2M 0s
00:45:09 4950K .......... .......... .......... .......... .......... 75% 21.6M 0s
00:45:09 5000K .......... .......... .......... .......... .......... 76% 12.7M 0s
00:45:09 5050K .......... .......... .......... .......... .......... 77% 21.7M 0s
00:45:09 5100K .......... .......... .......... .......... .......... 78% 13.6M 0s
00:45:09 5150K .......... .......... .......... .......... .......... 78% 27.5M 0s
00:45:09 5200K .......... .......... .......... .......... .......... 79% 19.9M 0s
00:45:09 5250K .......... .......... .......... .......... .......... 80% 10.3M 0s
00:45:09 5300K .......... .......... .......... .......... .......... 81% 38.0M 0s
00:45:09 5350K .......... .......... .......... .......... .......... 81% 21.4M 0s
00:45:09 5400K .......... .......... .......... .......... .......... 82% 16.4M 0s
00:45:09 5450K .......... .......... .......... .......... .......... 83% 19.9M 0s
00:45:09 5500K .......... .......... .......... .......... .......... 84% 10.8M 0s
00:45:09 5550K .......... .......... .......... .......... .......... 84% 21.3M 0s
00:45:09 5600K .......... .......... .......... .......... .......... 85% 31.1M 0s
00:45:09 5650K .......... .......... .......... .......... .......... 86% 14.8M 0s
00:45:09 5700K .......... .......... .......... .......... .......... 87% 23.3M 0s
00:45:09 5750K .......... .......... .......... .......... .......... 87% 24.6M 0s
00:45:09 5800K .......... .......... .......... .......... .......... 88% 12.6M 0s
00:45:09 5850K .......... .......... .......... .......... .......... 89% 19.6M 0s
00:45:09 5900K .......... .......... .......... .......... .......... 90% 12.2M 0s
00:45:09 5950K .......... .......... .......... .......... .......... 91% 28.7M 0s
00:45:09 6000K .......... .......... .......... .......... .......... 91% 26.3M 0s
00:45:09 6050K .......... .......... .......... .......... .......... 92% 13.1M 0s
00:45:09 6100K .......... .......... .......... .......... .......... 93% 30.6M 0s
00:45:09 6150K .......... .......... .......... .......... .......... 94% 11.5M 0s
00:45:09 6200K .......... .......... .......... .......... .......... 94% 19.7M 0s
00:45:09 6250K .......... .......... .......... .......... .......... 95% 20.2M 0s
00:45:09 6300K .......... .......... .......... .......... .......... 96% 13.1M 0s
00:45:09 6350K .......... .......... .......... .......... .......... 97% 25.1M 0s
00:45:09 6400K .......... .......... .......... .......... .......... 97% 12.4M 0s
00:45:09 6450K .......... .......... .......... .......... .......... 98% 29.0M 0s
00:45:09 6500K .......... .......... .......... .......... .......... 99% 19.7M 0s
00:45:09 6550K .......... .......... .......... .......... . 100% 12.7M=0.4s
00:45:09
00:45:09 2026-02-16 00:45:09 (16.6 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zstd-jni-1.5.5-7.jar’ saved [6749842/6749842]
00:45:09
00:45:09 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/scalableminds/blosc-java/0.1-1.21.4/blosc-java-0.1-1.21.4.jar
00:45:09 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:09 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:09 --2026-02-16 00:45:09-- https://repo1.maven.org/maven2/com/scalableminds/blosc-java/0.1-1.21.4/blosc-java-0.1-1.21.4.jar
00:45:09 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:45:09 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:09 HTTP request sent, awaiting response... 200 OK
00:45:09 Length: 1732435 (1.7M) [application/java-archive]
00:45:09 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/blosc-java-0.1-1.21.4.jar’
00:45:09
00:45:09 0K .......... .......... .......... .......... .......... 2% 34.1M 0s
00:45:09 50K .......... .......... .......... .......... .......... 5% 3.58M 0s
00:45:09 100K .......... .......... .......... .......... .......... 8% 70.7M 0s
00:45:09 150K .......... .......... .......... .......... .......... 11% 3.79M 0s
00:45:09 200K .......... .......... .......... .......... .......... 14% 182M 0s
00:45:09 250K .......... .......... .......... .......... .......... 17% 76.5M 0s
00:45:09 300K .......... .......... .......... .......... .......... 20% 56.6M 0s
00:45:09 350K .......... .......... .......... .......... .......... 23% 61.1M 0s
00:45:09 400K .......... .......... .......... .......... .......... 26% 4.33M 0s
00:45:09 450K .......... .......... .......... .......... .......... 29% 290M 0s
00:45:09 500K .......... .......... .......... .......... .......... 32% 82.0M 0s
00:45:10 550K .......... .......... .......... .......... .......... 35% 56.8M 0s
00:45:10 600K .......... .......... .......... .......... .......... 38% 280M 0s
00:45:10 650K .......... .......... .......... .......... .......... 41% 4.05M 0s
00:45:10 700K .......... .......... .......... .......... .......... 44% 101M 0s
00:45:10 750K .......... .......... .......... .......... .......... 47% 272M 0s
00:45:10 800K .......... .......... .......... .......... .......... 50% 57.9M 0s
00:45:10 850K .......... .......... .......... .......... .......... 53% 299M 0s
00:45:10 900K .......... .......... .......... .......... .......... 56% 4.12M 0s
00:45:10 950K .......... .......... .......... .......... .......... 59% 165M 0s
00:45:10 1000K .......... .......... .......... .......... .......... 62% 90.3M 0s
00:45:10 1050K .......... .......... .......... .......... .......... 65% 54.0M 0s
00:45:10 1100K .......... .......... .......... .......... .......... 67% 62.3M 0s
00:45:10 1150K .......... .......... .......... .......... .......... 70% 4.17M 0s
00:45:10 1200K .......... .......... .......... .......... .......... 73% 262M 0s
00:45:10 1250K .......... .......... .......... .......... .......... 76% 97.4M 0s
00:45:10 1300K .......... .......... .......... .......... .......... 79% 74.3M 0s
00:45:10 1350K .......... .......... .......... .......... .......... 82% 60.1M 0s
00:45:10 1400K .......... .......... .......... .......... .......... 85% 5.35M 0s
00:45:10 1450K .......... .......... .......... .......... .......... 88% 18.7M 0s
00:45:10 1500K .......... .......... .......... .......... .......... 91% 35.0M 0s
00:45:10 1550K .......... .......... .......... .......... .......... 94% 25.2M 0s
00:45:10 1600K .......... .......... .......... .......... .......... 97% 25.2M 0s
00:45:10 1650K .......... .......... .......... .......... . 100% 20.4M=0.1s
00:45:10
00:45:10 2026-02-16 00:45:10 (15.7 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/blosc-java-0.1-1.21.4.jar’ saved [1732435/1732435]
00:45:10
00:45:10 + for x in *.jar
00:45:10 + mv omero-zarr-pixel-buffer-0.6.2-SNAPSHOT.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server
00:45:10 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:45:10 ++ deactivate nondestructive
00:45:10 ++ '[' -n '' ']'
00:45:10 ++ '[' -n '' ']'
00:45:10 ++ hash -r
00:45:10 ++ '[' -n '' ']'
00:45:10 ++ unset VIRTUAL_ENV
00:45:10 ++ unset VIRTUAL_ENV_PROMPT
00:45:10 ++ '[' '!' nondestructive = nondestructive ']'
00:45:10 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:45:10 ++ export VIRTUAL_ENV
00:45:10 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:45:10 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:45:10 ++ export PATH
00:45:10 ++ '[' -n '' ']'
00:45:10 ++ '[' -z '' ']'
00:45:10 ++ _OLD_VIRTUAL_PS1=
00:45:10 ++ PS1='(.venv3) '
00:45:10 ++ export PS1
00:45:10 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:45:10 ++ export VIRTUAL_ENV_PROMPT
00:45:10 ++ hash -r
00:45:10 + pip install -U pip
00:45:10 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
00:45:11 Collecting pip
00:45:11 Using cached pip-26.0.1-py3-none-any.whl (1.8 MB)
00:45:11 Installing collected packages: pip
00:45:11 Attempting uninstall: pip
00:45:11 Found existing installation: pip 22.3.1
00:45:11 Uninstalling pip-22.3.1:
00:45:11 Successfully uninstalled pip-22.3.1
00:45:12 Successfully installed pip-26.0.1
00:45:12 WARNING: There was an error checking the latest version of pip.
00:45:12 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
00:45:12 Collecting zeroc-ice==3.6.5
00:45:13 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:45:15 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 20.2 MB/s 0:00:01
00:45:15 Installing collected packages: zeroc-ice
00:45:15 Successfully installed zeroc-ice-3.6.5
00:45:15 + pip install markdown
00:45:16 Collecting markdown
00:45:16 Using cached markdown-3.10.2-py3-none-any.whl.metadata (5.1 kB)
00:45:16 Using cached markdown-3.10.2-py3-none-any.whl (108 kB)
00:45:16 Installing collected packages: markdown
00:45:16 Successfully installed markdown-3.10.2
00:45:16 + pip install reportlab
00:45:16 Collecting reportlab
00:45:16 Using cached reportlab-4.4.10-py3-none-any.whl.metadata (1.7 kB)
00:45:17 Collecting pillow>=9.0.0 (from reportlab)
00:45:17 Using cached pillow-12.1.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.8 kB)
00:45:17 Collecting charset-normalizer (from reportlab)
00:45:17 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (37 kB)
00:45:17 Using cached reportlab-4.4.10-py3-none-any.whl (2.0 MB)
00:45:17 Using cached pillow-12.1.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB)
00:45:17 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB)
00:45:17 Installing collected packages: pillow, charset-normalizer, reportlab
00:45:18
00:45:18 Successfully installed charset-normalizer-3.4.4 pillow-12.1.1 reportlab-4.4.10
00:45:18 + pip install omego
00:45:18 Collecting omego
00:45:18 Using cached omego-0.7.0-py3-none-any.whl
00:45:18 Collecting future (from omego)
00:45:18 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
00:45:18 Collecting yaclifw>=0.1.1 (from omego)
00:45:18 Using cached yaclifw-0.2.0-py3-none-any.whl
00:45:18 Collecting six (from yaclifw>=0.1.1->omego)
00:45:18 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
00:45:18 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:45:18 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
00:45:19 Installing collected packages: six, future, yaclifw, omego
00:45:19
00:45:19 Successfully installed future-1.0.0 omego-0.7.0 six-1.17.0 yaclifw-0.2.0
00:45:19 + pip install tables
00:45:19 Collecting tables
00:45:19 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB)
00:45:19 Collecting numpy>=1.20.0 (from tables)
00:45:20 Using cached numpy-2.4.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB)
00:45:20 Collecting numexpr>=2.6.2 (from tables)
00:45:20 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
00:45:20 Collecting packaging (from tables)
00:45:20 Using cached packaging-26.0-py3-none-any.whl.metadata (3.3 kB)
00:45:20 Collecting py-cpuinfo (from tables)
00:45:20 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
00:45:20 Collecting blosc2>=2.3.0 (from tables)
00:45:20 Using cached blosc2-4.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (7.6 kB)
00:45:20 Collecting typing-extensions>=4.4.0 (from tables)
00:45:20 Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB)
00:45:20 Collecting ndindex (from blosc2>=2.3.0->tables)
00:45:20 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
00:45:20 Collecting msgpack (from blosc2>=2.3.0->tables)
00:45:20 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
00:45:20 Collecting requests (from blosc2>=2.3.0->tables)
00:45:20 Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB)
00:45:20 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.4.4)
00:45:20 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables)
00:45:20 Using cached idna-3.11-py3-none-any.whl.metadata (8.4 kB)
00:45:20 Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables)
00:45:20 Using cached urllib3-2.6.3-py3-none-any.whl.metadata (6.9 kB)
00:45:20 Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables)
00:45:20 Using cached certifi-2026.1.4-py3-none-any.whl.metadata (2.5 kB)
00:45:20 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
00:45:20 Using cached blosc2-4.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (4.7 MB)
00:45:20 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB)
00:45:20 Using cached numpy-2.4.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
00:45:20 Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB)
00:45:20 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (426 kB)
00:45:20 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
00:45:20 Using cached packaging-26.0-py3-none-any.whl (74 kB)
00:45:20 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
00:45:20 Using cached requests-2.32.5-py3-none-any.whl (64 kB)
00:45:20 Using cached idna-3.11-py3-none-any.whl (71 kB)
00:45:20 Using cached urllib3-2.6.3-py3-none-any.whl (131 kB)
00:45:20 Using cached certifi-2026.1.4-py3-none-any.whl (152 kB)
00:45:20 Installing collected packages: py-cpuinfo, urllib3, typing-extensions, packaging, numpy, ndindex, msgpack, idna, certifi, requests, numexpr, blosc2, tables
00:45:23
00:45:23 Successfully installed blosc2-4.0.0 certifi-2026.1.4 idna-3.11 msgpack-1.1.2 ndindex-1.10.1 numexpr-2.14.1 numpy-2.4.2 packaging-26.0 py-cpuinfo-9.0.0 requests-2.32.5 tables-3.10.2 typing-extensions-4.15.0 urllib3-2.6.3
00:45:24 + pip install jinja2
00:45:24 Collecting jinja2
00:45:24 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
00:45:24 Collecting MarkupSafe>=2.0 (from jinja2)
00:45:24 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
00:45:24 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
00:45:24 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
00:45:24 Installing collected packages: MarkupSafe, jinja2
00:45:24
00:45:24 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
00:45:24 + pip install omero-py
00:45:25 Collecting omero-py
00:45:25 Using cached omero_py-5.22.0-py3-none-any.whl.metadata (6.5 kB)
00:45:25 Collecting appdirs (from omero-py)
00:45:25 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
00:45:25 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
00:45:25 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.2)
00:45:25 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.1.1)
00:45:25 Collecting PyYAML (from omero-py)
00:45:25 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
00:45:25 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
00:45:25 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.32.5)
00:45:25 Collecting portalocker (from omero-py)
00:45:25 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
00:45:25 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.4)
00:45:25 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.11)
00:45:25 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2.6.3)
00:45:25 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.1.4)
00:45:25 Using cached omero_py-5.22.0-py3-none-any.whl (2.8 MB)
00:45:25 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:45:25 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
00:45:25 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
00:45:25 Installing collected packages: appdirs, PyYAML, portalocker, omero-py
00:45:27
00:45:27 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.22.0 portalocker-3.2.0
00:45:27 + pip install pyarrow
00:45:27 Collecting pyarrow
00:45:27 Using cached pyarrow-23.0.0-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (3.0 kB)
00:45:27 Using cached pyarrow-23.0.0-cp311-cp311-manylinux_2_28_x86_64.whl (47.5 MB)
00:45:27 Installing collected packages: pyarrow
00:45:29 Successfully installed pyarrow-23.0.0
00:45:29 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
00:45:29 Collecting omero-metadata
00:45:29 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-xaeu38mq/omero-metadata_d1d66f037f224b7c834ed5298df9aea9
00:45:29 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-xaeu38mq/omero-metadata_d1d66f037f224b7c834ed5298df9aea9
00:45:30 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 828c0d077ab7ef94259ed89c440d587aa4391bfb
00:45:30 Installing build dependencies: started
00:45:31 Installing build dependencies: finished with status 'done'
00:45:31 Getting requirements to build wheel: started
00:45:31 Getting requirements to build wheel: finished with status 'done'
00:45:31 Preparing metadata (pyproject.toml): started
00:45:31 Preparing metadata (pyproject.toml): finished with status 'done'
00:45:31 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.22.0)
00:45:31 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.3)
00:45:31 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6)
00:45:31 Collecting pandas (from omero-metadata)
00:45:31 Using cached pandas-3.0.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (79 kB)
00:45:31 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
00:45:31 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
00:45:31 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.4.2)
00:45:31 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.1.1)
00:45:31 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
00:45:31 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.5)
00:45:31 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0)
00:45:31 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.3)
00:45:31 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
00:45:31 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
00:45:31 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
00:45:31 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.4)
00:45:31 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.11)
00:45:31 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.6.3)
00:45:31 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.1.4)
00:45:31 Using cached pandas-3.0.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (11.2 MB)
00:45:31 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
00:45:32 Building wheels for collected packages: omero-metadata
00:45:32 Building wheel for omero-metadata (pyproject.toml): started
00:45:32 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
00:45:32 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39376 sha256=46d6108a54844b06a46e65a85e8c59fe816df7b5fbef6e62e2686d1fe57ef43b
00:45:32 Stored in directory: /tmp/pip-ephem-wheel-cache-rdy04_oh/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
00:45:32 Successfully built omero-metadata
00:45:32 Installing collected packages: python-dateutil, pandas, omero-metadata
00:45:37
00:45:37 Successfully installed omero-metadata-0.13.1.dev0 pandas-3.0.0 python-dateutil-2.9.0.post0
00:45:37 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
00:45:37 Collecting omero-cli-render
00:45:37 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-f8phk0co/omero-cli-render_94953ed8437f483fae50d8362f837a61
00:45:37 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-f8phk0co/omero-cli-render_94953ed8437f483fae50d8362f837a61
00:45:38 Running command git checkout -b merge_ci --track origin/merge_ci
00:45:38 Switched to a new branch 'merge_ci'
00:45:38 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:45:38 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 0baf510bbb60ae087093fb96e145e8d04bbf01b3
00:45:38 Installing build dependencies: started
00:45:39 Installing build dependencies: finished with status 'done'
00:45:39 Getting requirements to build wheel: started
00:45:39 Getting requirements to build wheel: finished with status 'done'
00:45:39 Preparing metadata (pyproject.toml): started
00:45:39 Preparing metadata (pyproject.toml): finished with status 'done'
00:45:39 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3)
00:45:39 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.22.0)
00:45:39 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
00:45:39 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
00:45:39 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.2)
00:45:39 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.1.1)
00:45:39 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
00:45:39 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.5)
00:45:39 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0)
00:45:39 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.4)
00:45:39 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.11)
00:45:39 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.6.3)
00:45:39 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.1.4)
00:45:39 Building wheels for collected packages: omero-cli-render
00:45:39 Building wheel for omero-cli-render (pyproject.toml): started
00:45:40 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
00:45:40 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19840 sha256=6ee9f1aed0a4f818c39918122231a724cd8c06e98a67e8c8ff52e37cb5aec734
00:45:40 Stored in directory: /tmp/pip-ephem-wheel-cache-162re7_4/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
00:45:40 Successfully built omero-cli-render
00:45:40 Installing collected packages: omero-cli-render
00:45:40 Successfully installed omero-cli-render-0.8.2.dev0
00:45:40 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
00:45:40 Collecting omero-cli-duplicate
00:45:40 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-kn0y6fos/omero-cli-duplicate_0fdc117431d442dfbff26731e8c23796
00:45:40 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-kn0y6fos/omero-cli-duplicate_0fdc117431d442dfbff26731e8c23796
00:45:41 Running command git checkout -b merge_ci --track origin/merge_ci
00:45:41 Switched to a new branch 'merge_ci'
00:45:41 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:45:41 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 657f00bd8cb7bf62ce7b24558a3bcc333e78ea6d
00:45:41 Installing build dependencies: started
00:45:42 Installing build dependencies: finished with status 'done'
00:45:42 Getting requirements to build wheel: started
00:45:42 Getting requirements to build wheel: finished with status 'done'
00:45:42 Preparing metadata (pyproject.toml): started
00:45:43 Preparing metadata (pyproject.toml): finished with status 'done'
00:45:43 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.22.0)
00:45:43 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
00:45:43 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
00:45:43 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.2)
00:45:43 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.1.1)
00:45:43 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3)
00:45:43 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
00:45:43 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.5)
00:45:43 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0)
00:45:43 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.4)
00:45:43 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.11)
00:45:43 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.6.3)
00:45:43 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.1.4)
00:45:43 Building wheels for collected packages: omero-cli-duplicate
00:45:43 Building wheel for omero-cli-duplicate (pyproject.toml): started
00:45:43 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
00:45:43 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11539 sha256=562c2fc6cecfbef7a17cc536c0cf6e9df89961f68c53f27f57bb16a4551acd0d
00:45:43 Stored in directory: /tmp/pip-ephem-wheel-cache-qzsntije/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
00:45:43 Successfully built omero-cli-duplicate
00:45:43 Installing collected packages: omero-cli-duplicate
00:45:43 Successfully installed omero-cli-duplicate-0.4.1.dev0
00:45:43 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr
00:45:43 Collecting omero-cli-zarr
00:45:43 Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-zx8w29vk/omero-cli-zarr_e6ed11f7c9864516a0daa3222cbd7f4b
00:45:43 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-zx8w29vk/omero-cli-zarr_e6ed11f7c9864516a0daa3222cbd7f4b
00:45:44 Running command git checkout -b merge_ci --track origin/merge_ci
00:45:44 Switched to a new branch 'merge_ci'
00:45:44 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:45:44 Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit acfe23f82f1172624a28afc8afb53577529c3b46
00:45:44 Installing build dependencies: started
00:45:45 Installing build dependencies: finished with status 'done'
00:45:45 Getting requirements to build wheel: started
00:45:45 Getting requirements to build wheel: finished with status 'done'
00:45:45 Installing backend dependencies: started
00:45:46 Installing backend dependencies: finished with status 'done'
00:45:46 Preparing metadata (pyproject.toml): started
00:45:47 Preparing metadata (pyproject.toml): finished with status 'done'
00:45:47 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.22.0)
00:45:47 Collecting ome-zarr>=0.12.0 (from omero-cli-zarr)
00:45:47 Using cached ome_zarr-0.13.0-py3-none-any.whl.metadata (2.9 kB)
00:45:47 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.12.0->omero-cli-zarr) (2.4.2)
00:45:47 Collecting dask<=2026.1.1,>=2025.12.0 (from ome-zarr>=0.12.0->omero-cli-zarr)
00:45:47 Using cached dask-2026.1.1-py3-none-any.whl.metadata (3.8 kB)
00:45:47 Collecting zarr>=3.0.0 (from ome-zarr>=0.12.0->omero-cli-zarr)
00:45:47 Using cached zarr-3.1.5-py3-none-any.whl.metadata (10 kB)
00:45:47 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:47 Using cached fsspec-2026.2.0-py3-none-any.whl.metadata (10 kB)
00:45:47 Collecting aiohttp (from ome-zarr>=0.12.0->omero-cli-zarr)
00:45:47 Using cached aiohttp-3.13.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
00:45:47 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.12.0->omero-cli-zarr) (2.32.5)
00:45:49 Collecting scikit-image>=0.19.0 (from ome-zarr>=0.12.0->omero-cli-zarr)
00:45:49 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB)
00:45:49 Collecting toolz (from ome-zarr>=0.12.0->omero-cli-zarr)
00:45:49 Using cached toolz-1.1.0-py3-none-any.whl.metadata (5.1 kB)
00:45:49 Collecting rangehttpserver (from ome-zarr>=0.12.0->omero-cli-zarr)
00:45:49 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl.metadata (769 bytes)
00:45:49 Collecting click>=8.1 (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:49 Using cached click-8.3.1-py3-none-any.whl.metadata (2.6 kB)
00:45:50 Collecting cloudpickle>=3.0.0 (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:50 Using cached cloudpickle-3.1.2-py3-none-any.whl.metadata (7.1 kB)
00:45:50 Requirement already satisfied: packaging>=20.0 in ./.venv3/lib64/python3.11/site-packages (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.12.0->omero-cli-zarr) (26.0)
00:45:50 Collecting partd>=1.4.0 (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:50 Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB)
00:45:50 Requirement already satisfied: pyyaml>=5.3.1 in ./.venv3/lib64/python3.11/site-packages (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.12.0->omero-cli-zarr) (6.0.3)
00:45:50 Collecting importlib_metadata>=4.13.0 (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:50 Using cached importlib_metadata-8.7.1-py3-none-any.whl.metadata (4.7 kB)
00:45:50 Collecting s3fs>2024.2.0 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:50 Using cached s3fs-2026.2.0-py3-none-any.whl.metadata (1.2 kB)
00:45:50 Collecting zipp>=3.20 (from importlib_metadata>=4.13.0->dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:50 Using cached zipp-3.23.0-py3-none-any.whl.metadata (3.6 kB)
00:45:50 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.4.4)
00:45:50 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.0.0)
00:45:50 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (12.1.1)
00:45:50 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.6.5)
00:45:50 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.2.0)
00:45:50 Collecting locket (from partd>=1.4.0->dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:50 Using cached locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB)
00:45:50 Collecting aiobotocore<4.0.0,>=2.19.0 (from s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:50 Using cached aiobotocore-3.1.3-py3-none-any.whl.metadata (26 kB)
00:45:50 Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:50 Using cached aioitertools-0.13.0-py3-none-any.whl.metadata (3.3 kB)
00:45:50 Collecting botocore<1.42.50,>=1.41.0 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:50 Using cached botocore-1.42.49-py3-none-any.whl.metadata (5.9 kB)
00:45:50 Requirement already satisfied: python-dateutil<3.0.0,>=2.1 in ./.venv3/lib64/python3.11/site-packages (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr) (2.9.0.post0)
00:45:50 Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:50 Using cached jmespath-1.1.0-py3-none-any.whl.metadata (7.6 kB)
00:45:50 Collecting multidict<7.0.0,>=6.0.0 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:50 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (5.3 kB)
00:45:51 Collecting wrapt<3.0.0,>=1.10.10 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:51 Using cached wrapt-2.1.1-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (7.4 kB)
00:45:51 Collecting aiohappyeyeballs>=2.5.0 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:51 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl.metadata (5.9 kB)
00:45:51 Collecting aiosignal>=1.4.0 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:51 Using cached aiosignal-1.4.0-py3-none-any.whl.metadata (3.7 kB)
00:45:51 Collecting attrs>=17.3.0 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:51 Using cached attrs-25.4.0-py3-none-any.whl.metadata (10 kB)
00:45:51 Collecting frozenlist>=1.1.1 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:51 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (20 kB)
00:45:51 Collecting propcache>=0.2.0 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:51 Using cached propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (13 kB)
00:45:51 Collecting yarl<2.0,>=1.17.0 (from aiohttp->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:51 Using cached yarl-1.22.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (75 kB)
00:45:51 Requirement already satisfied: urllib3!=2.2.0,<3,>=1.25.4 in ./.venv3/lib64/python3.11/site-packages (from botocore<1.42.50,>=1.41.0->aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr) (2.6.3)
00:45:51 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil<3.0.0,>=2.1->aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.12.0->omero-cli-zarr) (1.17.0)
00:45:51 Requirement already satisfied: idna>=2.0 in ./.venv3/lib64/python3.11/site-packages (from yarl<2.0,>=1.17.0->aiohttp->ome-zarr>=0.12.0->omero-cli-zarr) (3.11)
00:45:51 Requirement already satisfied: typing-extensions>=4.2 in ./.venv3/lib64/python3.11/site-packages (from aiosignal>=1.4.0->aiohttp->ome-zarr>=0.12.0->omero-cli-zarr) (4.15.0)
00:45:51 Collecting scipy>=1.11.4 (from scikit-image>=0.19.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:51 Using cached scipy-1.17.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (62 kB)
00:45:51 Collecting networkx>=3.0 (from scikit-image>=0.19.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:51 Using cached networkx-3.6.1-py3-none-any.whl.metadata (6.8 kB)
00:45:51 Collecting imageio!=2.35.0,>=2.33 (from scikit-image>=0.19.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:51 Using cached imageio-2.37.2-py3-none-any.whl.metadata (9.7 kB)
00:45:51 Collecting tifffile>=2022.8.12 (from scikit-image>=0.19.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:51 Downloading tifffile-2026.2.15-py3-none-any.whl.metadata (30 kB)
00:45:51 Collecting lazy-loader>=0.4 (from scikit-image>=0.19.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:51 Using cached lazy_loader-0.4-py3-none-any.whl.metadata (7.6 kB)
00:45:52 Collecting donfig>=0.8 (from zarr>=3.0.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:52 Using cached donfig-0.8.1.post1-py3-none-any.whl.metadata (5.0 kB)
00:45:52 Collecting google-crc32c>=1.5 (from zarr>=3.0.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:52 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl.metadata (1.7 kB)
00:45:52 Collecting numcodecs>=0.14 (from zarr>=3.0.0->ome-zarr>=0.12.0->omero-cli-zarr)
00:45:52 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (3.4 kB)
00:45:52 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.12.0->omero-cli-zarr) (3.4.4)
00:45:52 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.12.0->omero-cli-zarr) (2026.1.4)
00:45:52 Using cached ome_zarr-0.13.0-py3-none-any.whl (42 kB)
00:45:52 Using cached dask-2026.1.1-py3-none-any.whl (1.5 MB)
00:45:52 Using cached click-8.3.1-py3-none-any.whl (108 kB)
00:45:52 Using cached cloudpickle-3.1.2-py3-none-any.whl (22 kB)
00:45:52 Using cached fsspec-2026.2.0-py3-none-any.whl (202 kB)
00:45:52 Using cached importlib_metadata-8.7.1-py3-none-any.whl (27 kB)
00:45:52 Using cached partd-1.4.2-py3-none-any.whl (18 kB)
00:45:52 Using cached s3fs-2026.2.0-py3-none-any.whl (31 kB)
00:45:52 Using cached aiobotocore-3.1.3-py3-none-any.whl (87 kB)
00:45:52 Using cached aiohttp-3.13.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.7 MB)
00:45:52 Using cached aioitertools-0.13.0-py3-none-any.whl (24 kB)
00:45:52 Using cached botocore-1.42.49-py3-none-any.whl (14.6 MB)
00:45:52 Using cached jmespath-1.1.0-py3-none-any.whl (20 kB)
00:45:52 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (246 kB)
00:45:52 Using cached wrapt-2.1.1-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (113 kB)
00:45:52 Using cached yarl-1.22.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (365 kB)
00:45:52 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl (15 kB)
00:45:52 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB)
00:45:52 Using cached attrs-25.4.0-py3-none-any.whl (67 kB)
00:45:52 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB)
00:45:52 Using cached propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (210 kB)
00:45:52 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB)
00:45:52 Using cached imageio-2.37.2-py3-none-any.whl (317 kB)
00:45:52 Using cached lazy_loader-0.4-py3-none-any.whl (12 kB)
00:45:52 Using cached networkx-3.6.1-py3-none-any.whl (2.1 MB)
00:45:52 Using cached scipy-1.17.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.1 MB)
00:45:52 Downloading tifffile-2026.2.15-py3-none-any.whl (233 kB)
00:45:52 Using cached toolz-1.1.0-py3-none-any.whl (58 kB)
00:45:52 Using cached zarr-3.1.5-py3-none-any.whl (284 kB)
00:45:52 Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB)
00:45:52 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl (33 kB)
00:45:52 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (9.1 MB)
00:45:52 Using cached zipp-3.23.0-py3-none-any.whl (10 kB)
00:45:52 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB)
00:45:52 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl (7.8 kB)
00:45:52 Building wheels for collected packages: omero-cli-zarr
00:45:52 Building wheel for omero-cli-zarr (pyproject.toml): started
00:45:52 Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done'
00:45:52 Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev152+gacfe23f-py3-none-any.whl size=38157 sha256=39515fb48620799bb5940f0a999f1477dd51bf2388ba7623cf9d12565adc1a58
00:45:52 Stored in directory: /tmp/pip-ephem-wheel-cache-dncqvz4k/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529
00:45:52 Successfully built omero-cli-zarr
00:45:53 Installing collected packages: rangehttpserver, zipp, wrapt, toolz, tifffile, scipy, propcache, numcodecs, networkx, multidict, locket, lazy-loader, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, zarr, yarl, scikit-image, partd, importlib_metadata, botocore, aiosignal, dask, aiohttp, aiobotocore, s3fs, ome-zarr, omero-cli-zarr
00:46:04
00:46:04 Successfully installed aiobotocore-3.1.3 aiohappyeyeballs-2.6.1 aiohttp-3.13.3 aioitertools-0.13.0 aiosignal-1.4.0 attrs-25.4.0 botocore-1.42.49 click-8.3.1 cloudpickle-3.1.2 dask-2026.1.1 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.2.0 google-crc32c-1.8.0 imageio-2.37.2 importlib_metadata-8.7.1 jmespath-1.1.0 lazy-loader-0.4 locket-1.0.0 multidict-6.7.1 networkx-3.6.1 numcodecs-0.16.5 ome-zarr-0.13.0 omero-cli-zarr-0.5.5.dev152+gacfe23f partd-1.4.2 propcache-0.4.1 rangehttpserver-1.4.0 s3fs-2026.2.0 scikit-image-0.26.0 scipy-1.17.0 tifffile-2026.2.15 toolz-1.1.0 wrapt-2.1.1 yarl-1.22.0 zarr-3.1.5 zipp-3.23.0
00:46:04 + pip install omero-certificates
00:46:04 Collecting omero-certificates
00:46:04 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
00:46:04 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.22.0)
00:46:04 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
00:46:04 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
00:46:04 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.2)
00:46:04 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.1.1)
00:46:04 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3)
00:46:04 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
00:46:04 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.5)
00:46:04 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0)
00:46:04 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.4)
00:46:04 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.11)
00:46:04 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.6.3)
00:46:04 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.1.4)
00:46:04 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
00:46:05 Installing collected packages: omero-certificates
00:46:05 Successfully installed omero-certificates-0.4.0
00:46:05 + for x in *.tar.gz
00:46:05 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
00:46:05 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
00:46:05 Installing build dependencies: started
00:46:06 Installing build dependencies: finished with status 'done'
00:46:06 Getting requirements to build wheel: started
00:46:06 Getting requirements to build wheel: finished with status 'done'
00:46:06 Preparing metadata (pyproject.toml): started
00:46:06 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:06 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.22.0)
00:46:06 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
00:46:06 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
00:46:06 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.2)
00:46:06 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.1.1)
00:46:06 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3)
00:46:06 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
00:46:06 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.5)
00:46:06 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0)
00:46:06 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.4)
00:46:06 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.11)
00:46:06 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.6.3)
00:46:06 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.1.4)
00:46:06 Building wheels for collected packages: omero-dropbox
00:46:06 Building wheel for omero-dropbox (pyproject.toml): started
00:46:06 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
00:46:06 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49138 sha256=9f581e81c180467e9c1d1251745b6b03588260d0fd6a8ebffdb4b37c260b534c
00:46:06 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
00:46:06 Successfully built omero-dropbox
00:46:07 Installing collected packages: omero-dropbox
00:46:07 Successfully installed omero-dropbox-5.7.1.dev0
00:46:07 + for x in *.tar.gz
00:46:07 + pip install -U omero_marshal-0.9.2.dev0.tar.gz
00:46:07 Processing ./omero_marshal-0.9.2.dev0.tar.gz
00:46:07 Installing build dependencies: started
00:46:08 Installing build dependencies: finished with status 'done'
00:46:08 Getting requirements to build wheel: started
00:46:08 Getting requirements to build wheel: finished with status 'done'
00:46:08 Preparing metadata (pyproject.toml): started
00:46:08 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:08 Building wheels for collected packages: omero_marshal
00:46:08 Building wheel for omero_marshal (pyproject.toml): started
00:46:09 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
00:46:09 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88131 sha256=f8353e2371504d0230cb827ad8fe0d1fa4ff0eafd06de1fe1dfe869ad7630504
00:46:09 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230
00:46:09 Successfully built omero_marshal
00:46:09 Installing collected packages: omero_marshal
00:46:10 Successfully installed omero_marshal-0.9.2.dev0
00:46:10 + for x in *.tar.gz
00:46:10 + pip install -U omero_py-5.22.1.dev0.tar.gz
00:46:10 Processing ./omero_py-5.22.1.dev0.tar.gz
00:46:11 Installing build dependencies: started
00:46:11 Installing build dependencies: finished with status 'done'
00:46:11 Getting requirements to build wheel: started
00:46:12 Getting requirements to build wheel: finished with status 'done'
00:46:12 Preparing metadata (pyproject.toml): started
00:46:12 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:12 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (1.4.4)
00:46:12 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (1.0.0)
00:46:12 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (2.4.2)
00:46:12 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (12.1.1)
00:46:12 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (6.0.3)
00:46:12 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (3.6.5)
00:46:12 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (2.32.5)
00:46:12 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (3.2.0)
00:46:12 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.1.dev0) (3.4.4)
00:46:12 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.1.dev0) (3.11)
00:46:12 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.1.dev0) (2.6.3)
00:46:12 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.1.dev0) (2026.1.4)
00:46:12 Building wheels for collected packages: omero-py
00:46:12 Building wheel for omero-py (pyproject.toml): started
00:46:13 Building wheel for omero-py (pyproject.toml): finished with status 'done'
00:46:13 Created wheel for omero-py: filename=omero_py-5.22.1.dev0-py3-none-any.whl size=2786544 sha256=48e337099014eaf6e93a97dc98aa116a08915a605ff42ff044ab8257c42155a7
00:46:13 Stored in directory: /home/omero/.cache/pip/wheels/e5/0d/4a/1d505358a194b66ce24f7dc55acc515e437e72953730429407
00:46:13 Successfully built omero-py
00:46:13 Installing collected packages: omero-py
00:46:13 Attempting uninstall: omero-py
00:46:13 Found existing installation: omero-py 5.22.0
00:46:13 Uninstalling omero-py-5.22.0:
00:46:14 Successfully uninstalled omero-py-5.22.0
00:46:15 Successfully installed omero-py-5.22.1.dev0
00:46:16 + for x in *.tar.gz
00:46:16 + pip install -U omero_scripts-5.10.1.dev0.tar.gz
00:46:16 Processing ./omero_scripts-5.10.1.dev0.tar.gz
00:46:16 Installing build dependencies: started
00:46:17 Installing build dependencies: finished with status 'done'
00:46:17 Getting requirements to build wheel: started
00:46:17 Getting requirements to build wheel: finished with status 'done'
00:46:17 Preparing metadata (pyproject.toml): started
00:46:17 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:17 Building wheels for collected packages: omero-scripts
00:46:17 Building wheel for omero-scripts (pyproject.toml): started
00:46:17 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
00:46:17 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=137002 sha256=12dd2097bb2dc8bf44867e474e2f9bafe0940d807fe54a41f54aab062655f46e
00:46:17 Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e
00:46:17 Successfully built omero-scripts
00:46:18 Installing collected packages: omero-scripts
00:46:18 Successfully installed omero-scripts-5.10.1.dev0
00:46:18 + for x in *.tar.gz
00:46:18 + pip install -U omero_web-5.31.1.dev0.tar.gz
00:46:18 Processing ./omero_web-5.31.1.dev0.tar.gz
00:46:18 Installing build dependencies: started
00:46:19 Installing build dependencies: finished with status 'done'
00:46:19 Getting requirements to build wheel: started
00:46:19 Getting requirements to build wheel: finished with status 'done'
00:46:19 Preparing metadata (pyproject.toml): started
00:46:20 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:20 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (5.22.1.dev0)
00:46:20 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.31.1.dev0)
00:46:20 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl.metadata (23 kB)
00:46:20 Collecting Django<5.3,>=5.2.9 (from omero-web==5.31.1.dev0)
00:46:20 Using cached django-5.2.11-py3-none-any.whl.metadata (4.1 kB)
00:46:20 Collecting django-pipeline>=4.1.0 (from omero-web==5.31.1.dev0)
00:46:20 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
00:46:20 Collecting django-cors-headers==3.7.0 (from omero-web==5.31.1.dev0)
00:46:20 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
00:46:20 Collecting whitenoise>=5.3.0 (from omero-web==5.31.1.dev0)
00:46:20 Using cached whitenoise-6.11.0-py3-none-any.whl.metadata (3.7 kB)
00:46:20 Collecting gunicorn>=19.3 (from omero-web==5.31.1.dev0)
00:46:20 Using cached gunicorn-25.1.0-py3-none-any.whl.metadata (5.5 kB)
00:46:20 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (0.9.2.dev0)
00:46:20 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (12.1.1)
00:46:20 Collecting pytz (from omero-web==5.31.1.dev0)
00:46:20 Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB)
00:46:20 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (3.2.0)
00:46:20 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (26.0)
00:46:20 Collecting importlib-resources (from omero-web==5.31.1.dev0)
00:46:20 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
00:46:20 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.31.1.dev0)
00:46:20 Using cached asgiref-3.11.1-py3-none-any.whl.metadata (9.3 kB)
00:46:20 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.31.1.dev0)
00:46:20 Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB)
00:46:20 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.31.1.dev0) (65.5.1)
00:46:20 Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.31.1.dev0)
00:46:20 Using cached wheel-0.46.3-py3-none-any.whl.metadata (2.4 kB)
00:46:20 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (1.4.4)
00:46:20 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (1.0.0)
00:46:20 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (2.4.2)
00:46:20 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (6.0.3)
00:46:20 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (3.6.5)
00:46:20 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (2.32.5)
00:46:20 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (3.4.4)
00:46:20 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (3.11)
00:46:20 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (2.6.3)
00:46:20 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (2026.1.4)
00:46:20 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
00:46:20 Using cached django-5.2.11-py3-none-any.whl (8.3 MB)
00:46:20 Using cached asgiref-3.11.1-py3-none-any.whl (24 kB)
00:46:20 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl (28 kB)
00:46:20 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
00:46:20 Using cached gunicorn-25.1.0-py3-none-any.whl (197 kB)
00:46:20 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB)
00:46:20 Using cached whitenoise-6.11.0-py3-none-any.whl (20 kB)
00:46:20 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
00:46:20 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB)
00:46:20 Using cached wheel-0.46.3-py3-none-any.whl (30 kB)
00:46:20 Building wheels for collected packages: omero-web
00:46:20 Building wheel for omero-web (pyproject.toml): started
00:46:21 Building wheel for omero-web (pyproject.toml): finished with status 'done'
00:46:21 Created wheel for omero-web: filename=omero_web-5.31.1.dev0-py3-none-any.whl size=2819289 sha256=fc776c83590afb0d38915ab5a4b3c660eb69e3046ef96119f3759238de94bc54
00:46:21 Stored in directory: /home/omero/.cache/pip/wheels/48/a3/5b/968853abf49b64e1726fdb37874d77f08ddad2d06b53de06b3
00:46:21 Successfully built omero-web
00:46:22 Installing collected packages: pytz, whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
00:46:24
00:46:24 Successfully installed Django-5.2.11 asgiref-3.11.1 concurrent-log-handler-0.9.28 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-25.1.0 importlib-resources-6.5.2 omero-web-5.31.1.dev0 pytz-2025.2 sqlparse-0.5.5 wheel-0.46.3 whitenoise-6.11.0
00:46:24 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
00:46:24 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:24 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:24 --2026-02-16 00:46:24-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
00:46:25 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.108.133, 185.199.111.133, 185.199.110.133, ...
00:46:25 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.108.133|:443... connected.
00:46:25 HTTP request sent, awaiting response... 200 OK
00:46:25 Length: 137709 (134K) [text/plain]
00:46:25 Saving to: ‘Figure_To_Pdf.py’
00:46:25
00:46:25 0K .......... .......... .......... .......... .......... 37% 4.48M 0s
00:46:25 50K .......... .......... .......... .......... .......... 74% 8.90M 0s
00:46:25 100K .......... .......... .......... .... 100% 5.81M=0.02s
00:46:25
00:46:25 2026-02-16 00:46:25 (5.92 MB/s) - ‘Figure_To_Pdf.py’ saved [137709/137709]
00:46:25
00:46:25 + chmod 755 Figure_To_Pdf.py
00:46:25 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
00:46:25 + omero config set omero.db.name OMERO-server
00:46:27 + omero config set omero.db.host pg
00:46:29 + omero config set omero.db.user postgres
00:46:31 + omero config set omero.data.dir /home/omero/omero-server-data
00:46:33 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
00:46:35 + omero config set omero.db.poolsize 25
00:46:37 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
00:46:38 + omero config set omero.security.trustStorePassword changeit
00:46:40 + omero config set omero.mail.config true
00:46:42 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
00:46:44 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
00:46:46 + omero certificates
00:46:48 OpenSSL 3.5.1 1 Jul 2025 (Library: OpenSSL 3.5.1 1 Jul 2025)
00:46:48 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
00:46:48 + '[' false = true ']'
00:46:48 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
00:46:48 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
00:46:48 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
00:46:48 2026-02-16 00:46:48,981 [ omego.db] DEBUG dbcommand => upgrade
00:46:48 2026-02-16 00:46:48,981 [ omego.db] DEBUG dbhost => localhost
00:46:48 2026-02-16 00:46:48,981 [ omego.db] DEBUG dbname => OMERO-server
00:46:48 2026-02-16 00:46:48,981 [ omego.db] DEBUG dbpass => omero
00:46:48 2026-02-16 00:46:48,981 [ omego.db] DEBUG dbuser => omero
00:46:48 2026-02-16 00:46:48,981 [ omego.db] DEBUG rootpass => omero
00:46:48 2026-02-16 00:46:48,981 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
00:46:48 2026-02-16 00:46:48,981 [omego.extern] INFO Executing : omero version
00:46:50 OMERO.py version:
00:46:50 OMERO.server version:
00:46:50 5.6.3-594-46bb7eb0b7-ice36-b55
00:46:50 5.22.1.dev0
00:46:50 2026-02-16 00:46:50,961 [omego.extern] INFO Completed [1.980 s]
00:46:50 2026-02-16 00:46:50,961 [omego.extern] DEBUG Using omero CLI from omero
00:46:50 2026-02-16 00:46:50,961 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
00:46:50 2026-02-16 00:46:50,961 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:46:50 2026-02-16 00:46:50,961 [omego.extern] INFO Executing : omero config get --show-password
00:46:52 2026-02-16 00:46:52,966 [omego.extern] INFO Completed [2.005 s]
00:46:52 2026-02-16 00:46:52,966 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:46:52 2026-02-16 00:46:52,967 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
00:46:52 2026-02-16 00:46:52,972 [omego.extern] INFO Completed [0.006 s]
00:46:52 2026-02-16 00:46:52,972 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.11\n'
00:46:52 2026-02-16 00:46:52,972 [ omego.db] INFO psql version: psql (PostgreSQL) 16.11
00:46:52
00:46:52 2026-02-16 00:46:52,973 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:46:52 2026-02-16 00:46:52,973 [omego.extern] INFO Executing : omero config get --show-password
00:46:54 2026-02-16 00:46:54,978 [omego.extern] INFO Completed [2.005 s]
00:46:54 2026-02-16 00:46:54,978 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:46:54 2026-02-16 00:46:54,978 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
00:46:54 2026-02-16 00:46:54,986 [omego.extern] INFO Completed [0.008 s]
00:46:54 2026-02-16 00:46:54,986 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.9") at port "5432".\n'
00:46:54 2026-02-16 00:46:54,986 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:46:54 2026-02-16 00:46:54,986 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:46:54 2026-02-16 00:46:54,986 [omego.extern] INFO Executing : omero config get --show-password
00:46:56 2026-02-16 00:46:56,917 [omego.extern] INFO Completed [1.931 s]
00:46:56 2026-02-16 00:46:56,917 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:46:56 2026-02-16 00:46:56,917 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:46:56 2026-02-16 00:46:56,928 [omego.extern] INFO Completed [0.010 s]
00:46:56 2026-02-16 00:46:56,928 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
00:46:56 2026-02-16 00:46:56,928 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
00:46:56 2026-02-16 00:46:56,929 [ omego.db] INFO Database is already at OMERO5.4__0
00:46:56 + export LANG=en_US.UTF-8
00:46:56 + LANG=en_US.UTF-8
00:46:56 + export LANGUAGE=en_US:en
00:46:56 + LANGUAGE=en_US:en
00:46:56 + export LC_ALL=en_US.UTF-8
00:46:56 + LC_ALL=en_US.UTF-8
00:46:56 + BUILD_ID=DONT_KILL_ME
00:46:56 + omero admin start
00:47:02 No descriptor given. Using etc/grid/default.xml
00:47:09 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
00:47:09 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
00:47:09 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
00:47:09 Waiting on startup. Use CTRL-C to exit
00:47:09 + omero admin waitup
00:47:11 Waiting on startup. Use CTRL-C to exit
00:47:11 + omero admin diagnostics
00:47:13
00:47:13 ================================================================================
00:47:13 OMERO Diagnostics (admin)
00:47:13 ================================================================================
00:47:13
00:47:13 Commands: java -version 17.0.17 (/usr/bin/java)
00:47:13 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
00:47:13 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
00:47:13 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
00:47:13 Commands: psql --version 16.11 (/usr/bin/psql)
00:47:13 Commands: openssl version 3.5.11 (/usr/bin/openssl)
00:47:13
00:47:13 Component: OMERO.py 5.22.1.dev0
00:47:13 Component: OMERO.server 5.6.3-594-46bb7eb0b7-ice36-b55
00:47:13
00:47:13 Server: icegridnode running
00:47:13 Server: Blitz-0 active (pid = 84065, enabled)
00:47:13 Server: Indexer-0 activating (enabled)
00:47:13 Server: OMERO.Glacier2 active (pid = 84100, enabled)
00:47:13 Server: OMERO.IceStorm active (pid = 84127, enabled)
00:47:13 Server: Processor-0 active (pid = 84116, enabled)
00:47:13 Server: Tables-0 active (pid = 84128, enabled)
00:47:13
00:47:13 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
00:47:13 Log files: Blitz-0.log 30.5 KB errors=0 warnings=1
00:47:13 Log files: DropBox.log n/a
00:47:13 Log files: FileServer.log n/a
00:47:13 Log files: Indexer-0.log 238 B
00:47:13 Log files: MonitorServer.log n/a
00:47:13 Log files: Processor-0.log 735 B
00:47:13 Log files: Tables-0.log 961 B
00:47:13 Log files: TestDropBox.log n/a
00:47:13 Log files: master.err empty
00:47:13 Log files: master.out 30.1 KB
00:47:13 Log files: Total size 0.06 MB
00:47:13
00:47:13
00:47:13 Environment:OMERO_HOME=(unset)
00:47:13 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:47:13 Environment:OMERO_NODE=(unset)
00:47:13 Environment:OMERO_MASTER=(unset)
00:47:13 Environment:OMERO_USERDIR=(unset)
00:47:13 Environment:OMERO_TMPDIR=(unset)
00:47:13 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:47:13 Environment:PYTHONPATH=(unset)
00:47:13 Environment:ICE_HOME=/opt/ice-3.6.5
00:47:13 Environment:LD_LIBRARY_PATH=(unset)
00:47:13 Environment:DYLD_LIBRARY_PATH=(unset)
00:47:13
00:47:13 OMERO SSL port:4064
00:47:13 OMERO TCP port:4063
00:47:13 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
00:47:13 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
00:47:13
00:47:13 JVM settings: Blitz-${index} -Xmx7200m
00:47:13 JVM settings: Indexer-${index} -Xmx4800m
00:47:13 JVM settings: PixelData-${index} -Xmx7200m
00:47:13 JVM settings: Repository-${index} -Xmx4800m
00:47:13
00:47:13 Jar: lib/server/formats-api.jar Bio-Formats API 8.5.0-SNAPSHOT 16 February 2026 3674952eb096c2437ae6d94e4a7b2f13fe949d71
00:47:13 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.5.0-SNAPSHOT 16 February 2026 3674952eb096c2437ae6d94e4a7b2f13fe949d71
00:47:13 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.5.0-SNAPSHOT 16 February 2026 3674952eb096c2437ae6d94e4a7b2f13fe949d71
00:47:13 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3-SNAPSHOT 16 February 2026 81ca87e6b57c17df7e5fff4e176573fe197f778a
00:47:13 Jar: lib/server/ome-common.jar OME Common Java 6.2.1-SNAPSHOT 16 February 2026 81ca87e6b57c17df7e5fff4e176573fe197f778a
00:47:13 Jar: lib/server/ome-jai.jar OME JAI 0.1.6-SNAPSHOT 16 February 2026 81ca87e6b57c17df7e5fff4e176573fe197f778a
00:47:13 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.5-SNAPSHOT 16 February 2026 81ca87e6b57c17df7e5fff4e176573fe197f778a
00:47:13 Jar: lib/server/ome-poi.jar OME POI 5.3.11-SNAPSHOT 16 February 2026 81ca87e6b57c17df7e5fff4e176573fe197f778a
00:47:13 Jar: lib/server/ome-xml.jar OME XML library 6.5.4-SNAPSHOT 16 February 2026 81ca87e6b57c17df7e5fff4e176573fe197f778a
00:47:13 Jar: lib/server/omero-blitz.jar jar 5.8.5-SNAPSHOT
00:47:13 Jar: lib/server/omero-common.jar jar 5.7.5-SNAPSHOT
00:47:13 Jar: lib/server/omero-gateway.jar jar 5.10.6-SNAPSHOT
00:47:13 Jar: lib/server/omero-model.jar jar 5.7.5-SNAPSHOT
00:47:13 Jar: lib/server/omero-renderer.jar jar 5.6.5-SNAPSHOT
00:47:13 Jar: lib/server/omero-romio.jar jar 5.8.5-SNAPSHOT
00:47:13 Jar: lib/server/omero-server.jar jar 5.7.5-SNAPSHOT
00:47:13 Jar: lib/server/omero-zarr-pixel-buffer-0.6.2-SNAPSHOT.jar OMERO Zarr Pixel Buffer 0.6.2-SNAPSHOT 1762810751880a8cb01ae293179c6c9d20b2cb45
00:47:14 + deactivate
00:47:14 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:47:14 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:47:14 + export PATH
00:47:14 + unset _OLD_VIRTUAL_PATH
00:47:14 + '[' -n '' ']'
00:47:14 + hash -r
00:47:14 + '[' -n '' ']'
00:47:14 + unset VIRTUAL_ENV
00:47:14 + unset VIRTUAL_ENV_PROMPT
00:47:14 + '[' '!' '' = nondestructive ']'
00:47:14 + unset -f deactivate
00:47:14 Finished: SUCCESS
