00:45:00 Started by upstream project "Trigger" build number 95
00:45:00 originally caused by:
00:45:00 Started by timer
00:45:00 Running as SYSTEM
00:45:00 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
00:45:00 [OMERO-server] $ /bin/bash -xe /tmp/jenkins4336841891138956660.sh
00:45:00 + source /home/settings.env
00:45:00 ++ OMERO_DB_HOST=pg
00:45:00 ++ OMERO_DB_USER=postgres
00:45:00 ++ OMERO_DB_PASS=
00:45:00 ++ OMERO_ROOT_PASS=omero
00:45:00 ++ OMERO_DATA_DIR=/OMERO
00:45:00 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:45:00 + OMERO_DB_NAME=OMERO-server
00:45:00 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:45:00 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:45:00 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:45:00 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:45:00 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
00:45:00 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:45:00 ++ deactivate nondestructive
00:45:00 ++ '[' -n '' ']'
00:45:00 ++ '[' -n '' ']'
00:45:00 ++ hash -r
00:45:00 ++ '[' -n '' ']'
00:45:00 ++ unset VIRTUAL_ENV
00:45:00 ++ unset VIRTUAL_ENV_PROMPT
00:45:00 ++ '[' '!' nondestructive = nondestructive ']'
00:45:00 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:45:00 ++ export VIRTUAL_ENV
00:45:00 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:45:00 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:45:00 ++ export PATH
00:45:00 ++ '[' -n '' ']'
00:45:00 ++ '[' -z '' ']'
00:45:00 ++ _OLD_VIRTUAL_PS1=
00:45:00 ++ PS1='(.venv3) '
00:45:00 ++ export PS1
00:45:00 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:45:00 ++ export VIRTUAL_ENV_PROMPT
00:45:00 ++ hash -r
00:45:00 + omero admin stop
00:45:02 Waiting on shutdown. Use CTRL-C to exit
00:45:02 .+ sleep 5
00:45:17 + deactivate
00:45:17 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:45:17 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:45:17 + export PATH
00:45:17 + unset _OLD_VIRTUAL_PATH
00:45:17 + '[' -n '' ']'
00:45:17 + hash -r
00:45:17 + '[' -n '' ']'
00:45:17 + unset VIRTUAL_ENV
00:45:17 + unset VIRTUAL_ENV_PROMPT
00:45:17 + '[' '!' '' = nondestructive ']'
00:45:17 + unset -f deactivate
00:45:17 + rm -rf /home/omero/workspace/OMERO-server/.venv3
00:45:18 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
00:45:22 + '[' false = true ']'
00:45:22 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
00:45:22 Skipping PURGE_DATA:CleanDbAndRepo
00:45:22 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.5-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.22.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.31.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
00:45:24 Copied 1 artifact from "OMERO-build" build number 71
00:45:24 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 67
00:45:24 Copied 2 artifacts from "OMERO-build-build" build number 71
00:45:24 Copied 1 artifact from "OMERO-zarr-pixel-buffer-build" build number 65
00:45:24 [OMERO-server] $ /bin/bash -xe /tmp/jenkins15977679566074321628.sh
00:45:24 + source /home/settings.env
00:45:24 ++ OMERO_DB_HOST=pg
00:45:24 ++ OMERO_DB_USER=postgres
00:45:24 ++ OMERO_DB_PASS=
00:45:24 ++ OMERO_ROOT_PASS=omero
00:45:24 ++ OMERO_DATA_DIR=/OMERO
00:45:24 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
00:45:24 + OMERO_DB_NAME=OMERO-server
00:45:24 + OMERO_DATA_DIR=/home/omero/omero-server-data
00:45:24 + mkdir -p /home/omero/omero-server-data
00:45:24 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
00:45:24 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:45:24 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:45:24 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:45:24 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
00:45:24 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:45:24 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
00:45:24 ++ ls OMERO.server-5.6.3-594-73f6e870cb-ice36-b71.zip
00:45:24 + ZIP=OMERO.server-5.6.3-594-73f6e870cb-ice36-b71.zip
00:45:24 + '[' '!' -z '' ']'
00:45:24 + DIST=OMERO.server-5.6.3-594-73f6e870cb-ice36-b71
00:45:24 + unzip OMERO.server-5.6.3-594-73f6e870cb-ice36-b71.zip
00:45:24 Archive: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71.zip
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/etc/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/etc/blitz/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/etc/grid/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/etc/profiles/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/etc/templates/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/etc/templates/error/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/etc/templates/grid/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/client/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/scripts/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/scripts/luts/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/scripts/luts/janelia/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/scripts/luts/matplotlib/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/scripts/luts/ncsa_paledit/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/scripts/luts/seaborn/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/scripts/luts/wcif/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/scripts/omero/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/scripts/omero/analysis_scripts/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/scripts/omero/annotation_scripts/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/scripts/omero/export_scripts/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/scripts/omero/figure_scripts/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/scripts/omero/import_scripts/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/scripts/omero/util_scripts/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/server/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/share/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/share/licenses/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/sql/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/sql/misc/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/sql/psql/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/sql/psql/OMERO3A__1/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/sql/psql/OMERO3A__10/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/sql/psql/OMERO3A__11/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/sql/psql/OMERO3A__2/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/sql/psql/OMERO3A__3/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/sql/psql/OMERO3A__4/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/sql/psql/OMERO3A__5/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/sql/psql/OMERO3A__6/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/sql/psql/OMERO3A__7/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/sql/psql/OMERO3A__8/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/sql/psql/OMERO3A__9/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/sql/psql/OMERO3__4/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/sql/psql/OMERO3__5/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/sql/psql/OMERO3__6/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/sql/psql/OMERO3__7/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/sql/psql/OMERO4.1__0/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/sql/psql/OMERO4.2__0/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/sql/psql/OMERO4.2__0/t/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/sql/psql/OMERO4.3__0/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/sql/psql/OMERO4.4__0/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/sql/psql/OMERO4__0/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/sql/psql/OMERO5.0__0/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/sql/psql/OMERO5.1__1/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/sql/psql/OMERO5.2__0/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/sql/psql/OMERO5.3__0/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/sql/psql/OMERO5.4DEV__1/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/sql/psql/OMERO5.4DEV__2/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/sql/psql/OMERO5.4DEV__3/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/sql/psql/OMERO5.4__0/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/var/
00:45:24 creating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/var/tmp/
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/LICENSE.txt
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/etc/backup.cfg
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/etc/blitz/mail-senders.example
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/etc/blitz/mail-server.example
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/etc/build.properties
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/etc/env.bat
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/etc/env.sh
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/etc/hibernate.properties
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/etc/ice.config
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/etc/logback-cli.xml
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/etc/logback-indexing-cli.xml
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/etc/logback-indexing.xml
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/etc/logback.xml
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/etc/mime.types
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/etc/node1.cfg
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/etc/node2.cfg
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/etc/omero.properties
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/etc/profiles/psql
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/etc/rollover.cfg
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/etc/templates/Windows.cfg
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/etc/templates/error/maintainance.html
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/etc/templates/grid/README
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/etc/templates/grid/default.xml
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/etc/templates/grid/templates.xml
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/etc/templates/grid/windefault.xml
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/etc/templates/ice.config
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/etc/templates/internal.cfg
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/etc/templates/master.cfg
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/etc/templates/robot.template
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/etc/testdropbox.config
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/history.rst
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/client/OMEZarrReader.jar
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/client/accessors-smart.jar
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/client/activation.jar
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/client/aggdesigner-algorithm.jar
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/client/aircompressor.jar
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/client/antlr.jar
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/client/aopalliance.jar
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/client/apiguardian-api.jar
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/client/asm.jar
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/client/avatica-core.jar
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/client/avatica-metrics.jar
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/client/aws-java-sdk-core.jar
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/client/aws-java-sdk-kms.jar
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/client/aws-java-sdk-s3.jar
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/client/base.jar
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/client/batik-anim.jar
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/client/batik-awt-util.jar
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/client/batik-bridge.jar
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/client/batik-codec.jar
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/client/batik-constants.jar
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/client/batik-css.jar
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/client/batik-dom.jar
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/client/batik-ext.jar
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/client/batik-gvt.jar
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/client/batik-i18n.jar
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/client/batik-parser.jar
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/client/batik-script.jar
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/client/batik-shared-resources.jar
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/client/batik-svg-dom.jar
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/client/batik-svggen.jar
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/client/batik-transcoder.jar
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/client/batik-util.jar
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/client/batik-xml.jar
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/client/btm.jar
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/client/calcite-core.jar
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/client/calcite-linq4j.jar
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/client/cdm-core.jar
00:45:24 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/lib/client/checker-qual.jar
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00:45:26 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
00:45:26 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
00:45:26 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
00:45:26 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
00:45:26 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
00:45:26 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
00:45:26 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
00:45:26 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
00:45:26 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
00:45:26 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
00:45:26 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
00:45:26 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/sql/psql/OMERO5.4__0/psql-footer.sql
00:45:26 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/sql/psql/OMERO5.4__0/psql-header.sql
00:45:26 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/sql/psql/OMERO5.4__0/schema.sql
00:45:26 inflating: OMERO.server-5.6.3-594-73f6e870cb-ice36-b71/sql/psql/OMERO5.4__0/views.sql
00:45:26 + rm -f OMERO.server-5.6.3-594-73f6e870cb-ice36-b71.zip
00:45:26 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-594-73f6e870cb-ice36-b71 /home/omero/workspace/OMERO-server/OMERO.server
00:45:26 + rm -rf /home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-core.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-kms.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-annotations.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-core.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-databind.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-classic.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-core.jar
00:45:26 + awsSdkVersion=2.34.6
00:45:26 + jacksonVersion=2.20.0
00:45:26 + logbackVersion=1.3.14
00:45:26 + zarrJavaVersion=0.0.10
00:45:26 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/s3/2.34.6/s3-2.34.6.jar
00:45:26 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:26 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:26 --2026-03-05 00:45:26-- https://repo1.maven.org/maven2/software/amazon/awssdk/s3/2.34.6/s3-2.34.6.jar
00:45:26 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:45:26 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:26 HTTP request sent, awaiting response... 200 OK
00:45:26 Length: 4083366 (3.9M) [application/java-archive]
00:45:26 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3-2.34.6.jar’
00:45:26
00:45:26 0K .......... .......... .......... .......... .......... 1% 14.8M 0s
00:45:26 50K .......... .......... .......... .......... .......... 2% 4.22M 1s
00:45:26 100K .......... .......... .......... .......... .......... 3% 15.5M 0s
00:45:26 150K .......... .......... .......... .......... .......... 5% 15.8M 0s
00:45:26 200K .......... .......... .......... .......... .......... 6% 13.3M 0s
00:45:26 250K .......... .......... .......... .......... .......... 7% 13.9M 0s
00:45:26 300K .......... .......... .......... .......... .......... 8% 14.5M 0s
00:45:26 350K .......... .......... .......... .......... .......... 10% 16.1M 0s
00:45:26 400K .......... .......... .......... .......... .......... 11% 17.5M 0s
00:45:26 450K .......... .......... .......... .......... .......... 12% 27.1M 0s
00:45:26 500K .......... .......... .......... .......... .......... 13% 25.1M 0s
00:45:26 550K .......... .......... .......... .......... .......... 15% 17.5M 0s
00:45:26 600K .......... .......... .......... .......... .......... 16% 36.7M 0s
00:45:26 650K .......... .......... .......... .......... .......... 17% 20.7M 0s
00:45:26 700K .......... .......... .......... .......... .......... 18% 23.3M 0s
00:45:26 750K .......... .......... .......... .......... .......... 20% 53.5M 0s
00:45:26 800K .......... .......... .......... .......... .......... 21% 13.6M 0s
00:45:26 850K .......... .......... .......... .......... .......... 22% 114M 0s
00:45:26 900K .......... .......... .......... .......... .......... 23% 19.0M 0s
00:45:26 950K .......... .......... .......... .......... .......... 25% 15.1M 0s
00:45:26 1000K .......... .......... .......... .......... .......... 26% 120M 0s
00:45:26 1050K .......... .......... .......... .......... .......... 27% 18.6M 0s
00:45:26 1100K .......... .......... .......... .......... .......... 28% 93.1M 0s
00:45:26 1150K .......... .......... .......... .......... .......... 30% 19.5M 0s
00:45:26 1200K .......... .......... .......... .......... .......... 31% 13.9M 0s
00:45:26 1250K .......... .......... .......... .......... .......... 32% 257M 0s
00:45:26 1300K .......... .......... .......... .......... .......... 33% 17.5M 0s
00:45:26 1350K .......... .......... .......... .......... .......... 35% 133M 0s
00:45:26 1400K .......... .......... .......... .......... .......... 36% 16.5M 0s
00:45:26 1450K .......... .......... .......... .......... .......... 37% 16.8M 0s
00:45:26 1500K .......... .......... .......... .......... .......... 38% 132M 0s
00:45:26 1550K .......... .......... .......... .......... .......... 40% 16.9M 0s
00:45:26 1600K .......... .......... .......... .......... .......... 41% 160M 0s
00:45:26 1650K .......... .......... .......... .......... .......... 42% 17.5M 0s
00:45:26 1700K .......... .......... .......... .......... .......... 43% 17.3M 0s
00:45:26 1750K .......... .......... .......... .......... .......... 45% 305M 0s
00:45:26 1800K .......... .......... .......... .......... .......... 46% 14.7M 0s
00:45:26 1850K .......... .......... .......... .......... .......... 47% 226M 0s
00:45:26 1900K .......... .......... .......... .......... .......... 48% 17.8M 0s
00:45:26 1950K .......... .......... .......... .......... .......... 50% 18.0M 0s
00:45:26 2000K .......... .......... .......... .......... .......... 51% 34.1M 0s
00:45:26 2050K .......... .......... .......... .......... .......... 52% 183M 0s
00:45:26 2100K .......... .......... .......... .......... .......... 53% 24.0M 0s
00:45:26 2150K .......... .......... .......... .......... .......... 55% 17.1M 0s
00:45:26 2200K .......... .......... .......... .......... .......... 56% 17.6M 0s
00:45:26 2250K .......... .......... .......... .......... .......... 57% 26.2M 0s
00:45:26 2300K .......... .......... .......... .......... .......... 58% 42.9M 0s
00:45:26 2350K .......... .......... .......... .......... .......... 60% 27.0M 0s
00:45:26 2400K .......... .......... .......... .......... .......... 61% 26.8M 0s
00:45:26 2450K .......... .......... .......... .......... .......... 62% 20.2M 0s
00:45:26 2500K .......... .......... .......... .......... .......... 63% 26.8M 0s
00:45:26 2550K .......... .......... .......... .......... .......... 65% 33.5M 0s
00:45:26 2600K .......... .......... .......... .......... .......... 66% 22.0M 0s
00:45:26 2650K .......... .......... .......... .......... .......... 67% 22.4M 0s
00:45:26 2700K .......... .......... .......... .......... .......... 68% 32.7M 0s
00:45:26 2750K .......... .......... .......... .......... .......... 70% 21.1M 0s
00:45:26 2800K .......... .......... .......... .......... .......... 71% 19.5M 0s
00:45:26 2850K .......... .......... .......... .......... .......... 72% 34.5M 0s
00:45:26 2900K .......... .......... .......... .......... .......... 73% 46.0M 0s
00:45:26 2950K .......... .......... .......... .......... .......... 75% 22.9M 0s
00:45:26 3000K .......... .......... .......... .......... .......... 76% 20.9M 0s
00:45:26 3050K .......... .......... .......... .......... .......... 77% 17.2M 0s
00:45:26 3100K .......... .......... .......... .......... .......... 78% 38.4M 0s
00:45:26 3150K .......... .......... .......... .......... .......... 80% 68.1M 0s
00:45:26 3200K .......... .......... .......... .......... .......... 81% 23.9M 0s
00:45:26 3250K .......... .......... .......... .......... .......... 82% 16.2M 0s
00:45:26 3300K .......... .......... .......... .......... .......... 84% 90.8M 0s
00:45:26 3350K .......... .......... .......... .......... .......... 85% 15.2M 0s
00:45:26 3400K .......... .......... .......... .......... .......... 86% 36.1M 0s
00:45:26 3450K .......... .......... .......... .......... .......... 87% 36.7M 0s
00:45:26 3500K .......... .......... .......... .......... .......... 89% 16.5M 0s
00:45:26 3550K .......... .......... .......... .......... .......... 90% 59.6M 0s
00:45:26 3600K .......... .......... .......... .......... .......... 91% 15.7M 0s
00:45:26 3650K .......... .......... .......... .......... .......... 92% 53.9M 0s
00:45:26 3700K .......... .......... .......... .......... .......... 94% 33.4M 0s
00:45:26 3750K .......... .......... .......... .......... .......... 95% 279M 0s
00:45:26 3800K .......... .......... .......... .......... .......... 96% 12.6M 0s
00:45:26 3850K .......... .......... .......... .......... .......... 97% 19.0M 0s
00:45:26 3900K .......... .......... .......... .......... .......... 99% 32.4M 0s
00:45:26 3950K .......... .......... .......... ....... 100% 34.2M=0.2s
00:45:26
00:45:26 2026-03-05 00:45:26 (22.7 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3-2.34.6.jar’ saved [4083366/4083366]
00:45:26
00:45:26 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/auth/2.34.6/auth-2.34.6.jar
00:45:26 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:26 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:26 --2026-03-05 00:45:26-- https://repo1.maven.org/maven2/software/amazon/awssdk/auth/2.34.6/auth-2.34.6.jar
00:45:27 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:45:27 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:27 HTTP request sent, awaiting response... 200 OK
00:45:27 Length: 234962 (229K) [application/java-archive]
00:45:27 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/auth-2.34.6.jar’
00:45:27
00:45:27 0K .......... .......... .......... .......... .......... 21% 2.14M 0s
00:45:27 50K .......... .......... .......... .......... .......... 43% 3.26M 0s
00:45:27 100K .......... .......... .......... .......... .......... 65% 3.13M 0s
00:45:27 150K .......... .......... .......... .......... .......... 87% 2.85M 0s
00:45:27 200K .......... .......... ......... 100% 3.28M=0.08s
00:45:27
00:45:27 2026-03-05 00:45:27 (2.83 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/auth-2.34.6.jar’ saved [234962/234962]
00:45:27
00:45:27 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/aws-core/2.34.6/aws-core-2.34.6.jar
00:45:27 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:27 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:27 --2026-03-05 00:45:27-- https://repo1.maven.org/maven2/software/amazon/awssdk/aws-core/2.34.6/aws-core-2.34.6.jar
00:45:27 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:45:27 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:27 HTTP request sent, awaiting response... 200 OK
00:45:27 Length: 192161 (188K) [application/java-archive]
00:45:27 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-core-2.34.6.jar’
00:45:27
00:45:27 0K .......... .......... .......... .......... .......... 26% 21.7M 0s
00:45:27 50K .......... .......... .......... .......... .......... 53% 5.73M 0s
00:45:27 100K .......... .......... .......... .......... .......... 79% 30.2M 0s
00:45:27 150K .......... .......... .......... ....... 100% 5.75M=0.02s
00:45:27
00:45:27 2026-03-05 00:45:27 (9.76 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-core-2.34.6.jar’ saved [192161/192161]
00:45:27
00:45:27 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/sdk-core/2.34.6/sdk-core-2.34.6.jar
00:45:27 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:27 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:27 --2026-03-05 00:45:27-- https://repo1.maven.org/maven2/software/amazon/awssdk/sdk-core/2.34.6/sdk-core-2.34.6.jar
00:45:28 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:45:28 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:28 HTTP request sent, awaiting response... 200 OK
00:45:28 Length: 1037104 (1013K) [application/java-archive]
00:45:28 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/sdk-core-2.34.6.jar’
00:45:28
00:45:28 0K .......... .......... .......... .......... .......... 4% 27.3M 0s
00:45:28 50K .......... .......... .......... .......... .......... 9% 5.57M 0s
00:45:28 100K .......... .......... .......... .......... .......... 14% 25.0M 0s
00:45:28 150K .......... .......... .......... .......... .......... 19% 6.87M 0s
00:45:28 200K .......... .......... .......... .......... .......... 24% 17.1M 0s
00:45:28 250K .......... .......... .......... .......... .......... 29% 25.8M 0s
00:45:28 300K .......... .......... .......... .......... .......... 34% 25.0M 0s
00:45:28 350K .......... .......... .......... .......... .......... 39% 23.6M 0s
00:45:28 400K .......... .......... .......... .......... .......... 44% 39.1M 0s
00:45:28 450K .......... .......... .......... .......... .......... 49% 18.0M 0s
00:45:28 500K .......... .......... .......... .......... .......... 54% 20.7M 0s
00:45:28 550K .......... .......... .......... .......... .......... 59% 31.2M 0s
00:45:28 600K .......... .......... .......... .......... .......... 64% 36.0M 0s
00:45:28 650K .......... .......... .......... .......... .......... 69% 46.3M 0s
00:45:28 700K .......... .......... .......... .......... .......... 74% 42.4M 0s
00:45:28 750K .......... .......... .......... .......... .......... 78% 21.7M 0s
00:45:28 800K .......... .......... .......... .......... .......... 83% 10.5M 0s
00:45:28 850K .......... .......... .......... .......... .......... 88% 168M 0s
00:45:28 900K .......... .......... .......... .......... .......... 93% 65.0M 0s
00:45:28 950K .......... .......... .......... .......... .......... 98% 44.9M 0s
00:45:28 1000K .......... .. 100% 284M=0.05s
00:45:28
00:45:28 2026-03-05 00:45:28 (20.2 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/sdk-core-2.34.6.jar’ saved [1037104/1037104]
00:45:28
00:45:28 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/url-connection-client/2.34.6/url-connection-client-2.34.6.jar
00:45:28 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:28 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:28 --2026-03-05 00:45:28-- https://repo1.maven.org/maven2/software/amazon/awssdk/url-connection-client/2.34.6/url-connection-client-2.34.6.jar
00:45:28 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:45:28 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:28 HTTP request sent, awaiting response... 200 OK
00:45:28 Length: 33040 (32K) [application/java-archive]
00:45:28 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/url-connection-client-2.34.6.jar’
00:45:28
00:45:28 0K .......... .......... .......... .. 100% 4.32M=0.007s
00:45:28
00:45:28 2026-03-05 00:45:28 (4.32 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/url-connection-client-2.34.6.jar’ saved [33040/33040]
00:45:28
00:45:28 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/annotations/2.34.6/annotations-2.34.6.jar
00:45:28 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:28 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:28 --2026-03-05 00:45:28-- https://repo1.maven.org/maven2/software/amazon/awssdk/annotations/2.34.6/annotations-2.34.6.jar
00:45:28 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:45:28 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:28 HTTP request sent, awaiting response... 200 OK
00:45:28 Length: 13758 (13K) [application/java-archive]
00:45:28 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/annotations-2.34.6.jar’
00:45:28
00:45:28 0K .......... ... 100% 68.4M=0s
00:45:28
00:45:28 2026-03-05 00:45:28 (68.4 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/annotations-2.34.6.jar’ saved [13758/13758]
00:45:28
00:45:28 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/regions/2.34.6/regions-2.34.6.jar
00:45:28 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:28 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:28 --2026-03-05 00:45:28-- https://repo1.maven.org/maven2/software/amazon/awssdk/regions/2.34.6/regions-2.34.6.jar
00:45:29 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:45:29 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:29 HTTP request sent, awaiting response... 200 OK
00:45:29 Length: 962220 (940K) [application/java-archive]
00:45:29 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/regions-2.34.6.jar’
00:45:29
00:45:29 0K .......... .......... .......... .......... .......... 5% 11.9M 0s
00:45:29 50K .......... .......... .......... .......... .......... 10% 5.90M 0s
00:45:29 100K .......... .......... .......... .......... .......... 15% 22.2M 0s
00:45:29 150K .......... .......... .......... .......... .......... 21% 11.1M 0s
00:45:29 200K .......... .......... .......... .......... .......... 26% 20.5M 0s
00:45:29 250K .......... .......... .......... .......... .......... 31% 27.0M 0s
00:45:29 300K .......... .......... .......... .......... .......... 37% 25.8M 0s
00:45:29 350K .......... .......... .......... .......... .......... 42% 24.7M 0s
00:45:29 400K .......... .......... .......... .......... .......... 47% 18.1M 0s
00:45:29 450K .......... .......... .......... .......... .......... 53% 22.6M 0s
00:45:29 500K .......... .......... .......... .......... .......... 58% 22.7M 0s
00:45:29 550K .......... .......... .......... .......... .......... 63% 260M 0s
00:45:29 600K .......... .......... .......... .......... .......... 69% 19.2M 0s
00:45:29 650K .......... .......... .......... .......... .......... 74% 27.6M 0s
00:45:29 700K .......... .......... .......... .......... .......... 79% 22.0M 0s
00:45:29 750K .......... .......... .......... .......... .......... 85% 22.7M 0s
00:45:29 800K .......... .......... .......... .......... .......... 90% 24.3M 0s
00:45:29 850K .......... .......... .......... .......... .......... 95% 21.3M 0s
00:45:29 900K .......... .......... .......... ......... 100% 47.0M=0.05s
00:45:29
00:45:29 2026-03-05 00:45:29 (19.1 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/regions-2.34.6.jar’ saved [962220/962220]
00:45:29
00:45:29 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/identity-spi/2.34.6/identity-spi-2.34.6.jar
00:45:29 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:29 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:29 --2026-03-05 00:45:29-- https://repo1.maven.org/maven2/software/amazon/awssdk/identity-spi/2.34.6/identity-spi-2.34.6.jar
00:45:29 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:45:29 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:29 HTTP request sent, awaiting response... 200 OK
00:45:29 Length: 30963 (30K) [application/java-archive]
00:45:29 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/identity-spi-2.34.6.jar’
00:45:29
00:45:29 0K .......... .......... .......... 100% 31.9M=0.001s
00:45:29
00:45:29 2026-03-05 00:45:29 (31.9 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/identity-spi-2.34.6.jar’ saved [30963/30963]
00:45:29
00:45:29 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/utils/2.34.6/utils-2.34.6.jar
00:45:29 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:29 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:29 --2026-03-05 00:45:29-- https://repo1.maven.org/maven2/software/amazon/awssdk/utils/2.34.6/utils-2.34.6.jar
00:45:29 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:45:29 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:29 HTTP request sent, awaiting response... 200 OK
00:45:30 Length: 241618 (236K) [application/java-archive]
00:45:30 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/utils-2.34.6.jar’
00:45:30
00:45:30 0K .......... .......... .......... .......... .......... 21% 31.4M 0s
00:45:30 50K .......... .......... .......... .......... .......... 42% 5.60M 0s
00:45:30 100K .......... .......... .......... .......... .......... 63% 27.3M 0s
00:45:30 150K .......... .......... .......... .......... .......... 84% 7.29M 0s
00:45:30 200K .......... .......... .......... ..... 100% 18.7M=0.02s
00:45:30
00:45:30 2026-03-05 00:45:30 (11.2 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/utils-2.34.6.jar’ saved [241618/241618]
00:45:30
00:45:30 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/http-client-spi/2.34.6/http-client-spi-2.34.6.jar
00:45:30 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:30 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:30 --2026-03-05 00:45:30-- https://repo1.maven.org/maven2/software/amazon/awssdk/http-client-spi/2.34.6/http-client-spi-2.34.6.jar
00:45:30 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:45:30 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:30 HTTP request sent, awaiting response... 200 OK
00:45:30 Length: 91685 (90K) [application/java-archive]
00:45:30 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/http-client-spi-2.34.6.jar’
00:45:30
00:45:30 0K .......... .......... .......... .......... .......... 55% 22.1M 0s
00:45:30 50K .......... .......... .......... ......... 100% 4.96M=0.01s
00:45:30
00:45:30 2026-03-05 00:45:30 (8.75 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/http-client-spi-2.34.6.jar’ saved [91685/91685]
00:45:30
00:45:30 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/software/amazon/awssdk/retries/2.34.6/retries-2.34.6.jar
00:45:30 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:30 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:30 --2026-03-05 00:45:30-- https://repo1.maven.org/maven2/software/amazon/awssdk/retries/2.34.6/retries-2.34.6.jar
00:45:30 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:45:30 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:30 HTTP request sent, awaiting response... 200 OK
00:45:30 Length: 66309 (65K) [application/java-archive]
00:45:30 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/retries-2.34.6.jar’
00:45:30
00:45:30 0K .......... .......... .......... .......... .......... 77% 26.7M 0s
00:45:30 50K .......... .... 100% 25.9M=0.002s
00:45:30
00:45:30 2026-03-05 00:45:30 (26.5 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/retries-2.34.6.jar’ saved [66309/66309]
00:45:30
00:45:30 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-core/2.20.0/jackson-core-2.20.0.jar
00:45:30 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:30 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:30 --2026-03-05 00:45:30-- https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-core/2.20.0/jackson-core-2.20.0.jar
00:45:30 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:45:30 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:30 HTTP request sent, awaiting response... 200 OK
00:45:30 Length: 593063 (579K) [application/java-archive]
00:45:30 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-core-2.20.0.jar’
00:45:30
00:45:30 0K .......... .......... .......... .......... .......... 8% 18.7M 0s
00:45:30 50K .......... .......... .......... .......... .......... 17% 5.42M 0s
00:45:30 100K .......... .......... .......... .......... .......... 25% 7.83M 0s
00:45:30 150K .......... .......... .......... .......... .......... 34% 35.1M 0s
00:45:30 200K .......... .......... .......... .......... .......... 43% 14.6M 0s
00:45:30 250K .......... .......... .......... .......... .......... 51% 25.8M 0s
00:45:30 300K .......... .......... .......... .......... .......... 60% 24.6M 0s
00:45:30 350K .......... .......... .......... .......... .......... 69% 26.2M 0s
00:45:30 400K .......... .......... .......... .......... .......... 77% 22.1M 0s
00:45:30 450K .......... .......... .......... .......... .......... 86% 25.0M 0s
00:45:30 500K .......... .......... .......... .......... .......... 94% 25.7M 0s
00:45:30 550K .......... .......... ......... 100% 349M=0.03s
00:45:30
00:45:30 2026-03-05 00:45:30 (16.4 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-core-2.20.0.jar’ saved [593063/593063]
00:45:30
00:45:30 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.20.0/jackson-databind-2.20.0.jar
00:45:30 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:30 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:30 --2026-03-05 00:45:30-- https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-databind/2.20.0/jackson-databind-2.20.0.jar
00:45:30 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:45:30 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:31 HTTP request sent, awaiting response... 200 OK
00:45:31 Length: 1688471 (1.6M) [application/java-archive]
00:45:31 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-databind-2.20.0.jar’
00:45:31
00:45:31 0K .......... .......... .......... .......... .......... 3% 28.2M 0s
00:45:31 50K .......... .......... .......... .......... .......... 6% 5.72M 0s
00:45:31 100K .......... .......... .......... .......... .......... 9% 6.61M 0s
00:45:31 150K .......... .......... .......... .......... .......... 12% 62.6M 0s
00:45:31 200K .......... .......... .......... .......... .......... 15% 59.6M 0s
00:45:31 250K .......... .......... .......... .......... .......... 18% 148M 0s
00:45:31 300K .......... .......... .......... .......... .......... 21% 289M 0s
00:45:31 350K .......... .......... .......... .......... .......... 24% 6.51M 0s
00:45:31 400K .......... .......... .......... .......... .......... 27% 265M 0s
00:45:31 450K .......... .......... .......... .......... .......... 30% 66.7M 0s
00:45:31 500K .......... .......... .......... .......... .......... 33% 134M 0s
00:45:31 550K .......... .......... .......... .......... .......... 36% 241M 0s
00:45:31 600K .......... .......... .......... .......... .......... 39% 6.45M 0s
00:45:31 650K .......... .......... .......... .......... .......... 42% 321M 0s
00:45:31 700K .......... .......... .......... .......... .......... 45% 65.0M 0s
00:45:31 750K .......... .......... .......... .......... .......... 48% 125M 0s
00:45:31 800K .......... .......... .......... .......... .......... 51% 72.0M 0s
00:45:31 850K .......... .......... .......... .......... .......... 54% 6.99M 0s
00:45:31 900K .......... .......... .......... .......... .......... 57% 48.3M 0s
00:45:31 950K .......... .......... .......... .......... .......... 60% 286M 0s
00:45:31 1000K .......... .......... .......... .......... .......... 63% 242M 0s
00:45:31 1050K .......... .......... .......... .......... .......... 66% 84.0M 0s
00:45:31 1100K .......... .......... .......... .......... .......... 69% 6.16M 0s
00:45:31 1150K .......... .......... .......... .......... .......... 72% 187M 0s
00:45:31 1200K .......... .......... .......... .......... .......... 75% 221M 0s
00:45:31 1250K .......... .......... .......... .......... .......... 78% 276M 0s
00:45:31 1300K .......... .......... .......... .......... .......... 81% 108M 0s
00:45:31 1350K .......... .......... .......... .......... .......... 84% 6.19M 0s
00:45:31 1400K .......... .......... .......... .......... .......... 87% 214M 0s
00:45:31 1450K .......... .......... .......... .......... .......... 90% 276M 0s
00:45:31 1500K .......... .......... .......... .......... .......... 94% 288M 0s
00:45:31 1550K .......... .......... .......... .......... .......... 97% 136M 0s
00:45:31 1600K .......... .......... .......... .......... ........ 100% 195M=0.07s
00:45:31
00:45:31 2026-03-05 00:45:31 (24.6 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-databind-2.20.0.jar’ saved [1688471/1688471]
00:45:31
00:45:31 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/datatype/jackson-datatype-jdk8/2.20.0/jackson-datatype-jdk8-2.20.0.jar
00:45:31 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:31 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:31 --2026-03-05 00:45:31-- https://repo1.maven.org/maven2/com/fasterxml/jackson/datatype/jackson-datatype-jdk8/2.20.0/jackson-datatype-jdk8-2.20.0.jar
00:45:31 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:45:31 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:31 HTTP request sent, awaiting response... 200 OK
00:45:31 Length: 36400 (36K) [application/java-archive]
00:45:31 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-datatype-jdk8-2.20.0.jar’
00:45:31
00:45:31 0K .......... .......... .......... ..... 100% 31.5M=0.001s
00:45:31
00:45:31 2026-03-05 00:45:31 (31.5 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-datatype-jdk8-2.20.0.jar’ saved [36400/36400]
00:45:31
00:45:31 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-annotations/2.20/jackson-annotations-2.20.jar
00:45:31 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:31 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:31 --2026-03-05 00:45:31-- https://repo1.maven.org/maven2/com/fasterxml/jackson/core/jackson-annotations/2.20/jackson-annotations-2.20.jar
00:45:31 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:45:31 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected.
00:45:31 HTTP request sent, awaiting response... 200 OK
00:45:31 Length: 79195 (77K) [application/java-archive]
00:45:31 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-annotations-2.20.jar’
00:45:31
00:45:31 0K .......... .......... .......... .......... .......... 64% 23.1M 0s
00:45:31 50K .......... .......... ....... 100% 3.36M=0.01s
00:45:31
00:45:31 2026-03-05 00:45:31 (7.51 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jackson-annotations-2.20.jar’ saved [79195/79195]
00:45:31
00:45:31 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar
00:45:31 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:31 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:31 --2026-03-05 00:45:31-- https://repo.maven.apache.org/maven2/ch/qos/logback/logback-classic/1.3.14/logback-classic-1.3.14.jar
00:45:31 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ...
00:45:31 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.18.12|:443... connected.
00:45:32 HTTP request sent, awaiting response... 200 OK
00:45:32 Length: 277829 (271K) [application/java-archive]
00:45:32 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-classic-1.3.14.jar’
00:45:32
00:45:32 0K .......... .......... .......... .......... .......... 18% 25.1M 0s
00:45:32 50K .......... .......... .......... .......... .......... 36% 5.78M 0s
00:45:32 100K .......... .......... .......... .......... .......... 55% 6.54M 0s
00:45:32 150K .......... .......... .......... .......... .......... 73% 35.4M 0s
00:45:32 200K .......... .......... .......... .......... .......... 92% 24.6M 0s
00:45:32 250K .......... .......... . 100% 23.4M=0.02s
00:45:32
00:45:32 2026-03-05 00:45:32 (12.0 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-classic-1.3.14.jar’ saved [277829/277829]
00:45:32
00:45:32 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar
00:45:32 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:32 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:32 --2026-03-05 00:45:32-- https://repo.maven.apache.org/maven2/ch/qos/logback/logback-core/1.3.14/logback-core-1.3.14.jar
00:45:32 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:45:32 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.18.12|:443... connected.
00:45:32 HTTP request sent, awaiting response... 200 OK
00:45:32 Length: 579673 (566K) [application/java-archive]
00:45:32 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-core-1.3.14.jar’
00:45:32
00:45:32 0K .......... .......... .......... .......... .......... 8% 29.0M 0s
00:45:32 50K .......... .......... .......... .......... .......... 17% 5.61M 0s
00:45:32 100K .......... .......... .......... .......... .......... 26% 6.57M 0s
00:45:32 150K .......... .......... .......... .......... .......... 35% 34.6M 0s
00:45:32 200K .......... .......... .......... .......... .......... 44% 17.7M 0s
00:45:32 250K .......... .......... .......... .......... .......... 52% 25.0M 0s
00:45:32 300K .......... .......... .......... .......... .......... 61% 22.9M 0s
00:45:32 350K .......... .......... .......... .......... .......... 70% 28.8M 0s
00:45:32 400K .......... .......... .......... .......... .......... 79% 25.4M 0s
00:45:32 450K .......... .......... .......... .......... .......... 88% 37.3M 0s
00:45:32 500K .......... .......... .......... .......... .......... 97% 12.7M 0s
00:45:32 550K .......... ...... 100% 333M=0.03s
00:45:32
00:45:32 2026-03-05 00:45:32 (15.8 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/logback-core-1.3.14.jar’ saved [579673/579673]
00:45:32
00:45:32 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/dev/zarr/zarr-java/0.0.10/zarr-java-0.0.10.jar
00:45:32 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:32 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:32 --2026-03-05 00:45:32-- https://repo.maven.apache.org/maven2/dev/zarr/zarr-java/0.0.10/zarr-java-0.0.10.jar
00:45:32 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:45:32 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
00:45:32 HTTP request sent, awaiting response... 200 OK
00:45:32 Length: 175836 (172K) [application/java-archive]
00:45:32 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zarr-java-0.0.10.jar’
00:45:32
00:45:32 0K .......... .......... .......... .......... .......... 29% 31.6M 0s
00:45:32 50K .......... .......... .......... .......... .......... 58% 5.57M 0s
00:45:32 100K .......... .......... .......... .......... .......... 87% 6.48M 0s
00:45:32 150K .......... .......... . 100% 45.8M=0.02s
00:45:32
00:45:32 2026-03-05 00:45:32 (9.16 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zarr-java-0.0.10.jar’ saved [175836/175836]
00:45:32
00:45:32 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
00:45:32 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:32 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:32 --2026-03-05 00:45:32-- https://repo.maven.apache.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar
00:45:32 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:45:32 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.19.12|:443... connected.
00:45:32 HTTP request sent, awaiting response... 200 OK
00:45:32 Length: 889211 (868K) [application/java-archive]
00:45:32 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’
00:45:32
00:45:32 0K .......... .......... .......... .......... .......... 5% 25.1M 0s
00:45:32 50K .......... .......... .......... .......... .......... 11% 5.85M 0s
00:45:32 100K .......... .......... .......... .......... .......... 17% 6.35M 0s
00:45:32 150K .......... .......... .......... .......... .......... 23% 22.6M 0s
00:45:32 200K .......... .......... .......... .......... .......... 28% 23.9M 0s
00:45:32 250K .......... .......... .......... .......... .......... 34% 26.3M 0s
00:45:32 300K .......... .......... .......... .......... .......... 40% 16.9M 0s
00:45:32 350K .......... .......... .......... .......... .......... 46% 26.0M 0s
00:45:32 400K .......... .......... .......... .......... .......... 51% 29.7M 0s
00:45:32 450K .......... .......... .......... .......... .......... 57% 49.7M 0s
00:45:32 500K .......... .......... .......... .......... .......... 63% 32.8M 0s
00:45:32 550K .......... .......... .......... .......... .......... 69% 13.1M 0s
00:45:32 600K .......... .......... .......... .......... .......... 74% 32.5M 0s
00:45:32 650K .......... .......... .......... .......... .......... 80% 24.8M 0s
00:45:32 700K .......... .......... .......... .......... .......... 86% 41.0M 0s
00:45:32 750K .......... .......... .......... .......... .......... 92% 101M 0s
00:45:32 800K .......... .......... .......... .......... .......... 97% 13.1M 0s
00:45:32 850K .......... ........ 100% 12.6M=0.05s
00:45:32
00:45:32 2026-03-05 00:45:32 (18.1 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’ saved [889211/889211]
00:45:32
00:45:32 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo.maven.apache.org/maven2/org/apache/tika/tika-core/1.28.5/tika-core-1.28.5.jar
00:45:32 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:32 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:32 --2026-03-05 00:45:32-- https://repo.maven.apache.org/maven2/org/apache/tika/tika-core/1.28.5/tika-core-1.28.5.jar
00:45:33 Resolving repo.maven.apache.org (repo.maven.apache.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ...
00:45:33 Connecting to repo.maven.apache.org (repo.maven.apache.org)|104.18.18.12|:443... connected.
00:45:33 HTTP request sent, awaiting response... 200 OK
00:45:33 Length: 736051 (719K) [application/java-archive]
00:45:33 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/tika-core-1.28.5.jar’
00:45:33
00:45:33 0K .......... .......... .......... .......... .......... 6% 27.2M 0s
00:45:33 50K .......... .......... .......... .......... .......... 13% 5.84M 0s
00:45:33 100K .......... .......... .......... .......... .......... 20% 26.1M 0s
00:45:33 150K .......... .......... .......... .......... .......... 27% 6.81M 0s
00:45:33 200K .......... .......... .......... .......... .......... 34% 27.0M 0s
00:45:33 250K .......... .......... .......... .......... .......... 41% 17.1M 0s
00:45:33 300K .......... .......... .......... .......... .......... 48% 25.9M 0s
00:45:33 350K .......... .......... .......... .......... .......... 55% 36.5M 0s
00:45:33 400K .......... .......... .......... .......... .......... 62% 24.9M 0s
00:45:33 450K .......... .......... .......... .......... .......... 69% 24.6M 0s
00:45:33 500K .......... .......... .......... .......... .......... 76% 28.5M 0s
00:45:33 550K .......... .......... .......... .......... .......... 83% 33.4M 0s
00:45:33 600K .......... .......... .......... .......... .......... 90% 18.0M 0s
00:45:33 650K .......... .......... .......... .......... .......... 97% 43.7M 0s
00:45:33 700K .......... ........ 100% 433M=0.04s
00:45:33
00:45:33 2026-03-05 00:45:33 (18.4 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/tika-core-1.28.5.jar’ saved [736051/736051]
00:45:33
00:45:33 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/squareup/okhttp/okhttp/2.7.5/okhttp-2.7.5.jar
00:45:33 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:33 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:33 --2026-03-05 00:45:33-- https://repo1.maven.org/maven2/com/squareup/okhttp/okhttp/2.7.5/okhttp-2.7.5.jar
00:45:33 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:45:33 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:33 HTTP request sent, awaiting response... 200 OK
00:45:33 Length: 331034 (323K) [application/java-archive]
00:45:33 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/okhttp-2.7.5.jar’
00:45:33
00:45:33 0K .......... .......... .......... .......... .......... 15% 28.7M 0s
00:45:33 50K .......... .......... .......... .......... .......... 30% 5.74M 0s
00:45:33 100K .......... .......... .......... .......... .......... 46% 29.6M 0s
00:45:33 150K .......... .......... .......... .......... .......... 61% 6.88M 0s
00:45:33 200K .......... .......... .......... .......... .......... 77% 18.0M 0s
00:45:33 250K .......... .......... .......... .......... .......... 92% 25.6M 0s
00:45:33 300K .......... .......... ... 100% 25.5M=0.02s
00:45:33
00:45:33 2026-03-05 00:45:33 (12.9 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/okhttp-2.7.5.jar’ saved [331034/331034]
00:45:33
00:45:33 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/github/luben/zstd-jni/1.5.5-7/zstd-jni-1.5.5-7.jar
00:45:33 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:33 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:33 --2026-03-05 00:45:33-- https://repo1.maven.org/maven2/com/github/luben/zstd-jni/1.5.5-7/zstd-jni-1.5.5-7.jar
00:45:33 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ...
00:45:33 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:33 HTTP request sent, awaiting response... 200 OK
00:45:33 Length: 6749842 (6.4M) [application/java-archive]
00:45:33 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zstd-jni-1.5.5-7.jar’
00:45:33
00:45:33 0K .......... .......... .......... .......... .......... 0% 10.1M 1s
00:45:33 50K .......... .......... .......... .......... .......... 1% 5.75M 1s
00:45:33 100K .......... .......... .......... .......... .......... 2% 29.6M 1s
00:45:33 150K .......... .......... .......... .......... .......... 3% 6.77M 1s
00:45:33 200K .......... .......... .......... .......... .......... 3% 17.8M 1s
00:45:33 250K .......... .......... .......... .......... .......... 4% 25.1M 1s
00:45:33 300K .......... .......... .......... .......... .......... 5% 25.8M 1s
00:45:33 350K .......... .......... .......... .......... .......... 6% 28.0M 0s
00:45:33 400K .......... .......... .......... .......... .......... 6% 29.6M 0s
00:45:33 450K .......... .......... .......... .......... .......... 7% 26.8M 0s
00:45:33 500K .......... .......... .......... .......... .......... 8% 17.4M 0s
00:45:33 550K .......... .......... .......... .......... .......... 9% 28.0M 0s
00:45:33 600K .......... .......... .......... .......... .......... 9% 27.5M 0s
00:45:33 650K .......... .......... .......... .......... .......... 10% 26.0M 0s
00:45:33 700K .......... .......... .......... .......... .......... 11% 53.6M 0s
00:45:33 750K .......... .......... .......... .......... .......... 12% 29.7M 0s
00:45:33 800K .......... .......... .......... .......... .......... 12% 17.2M 0s
00:45:33 850K .......... .......... .......... .......... .......... 13% 27.7M 0s
00:45:33 900K .......... .......... .......... .......... .......... 14% 25.9M 0s
00:45:33 950K .......... .......... .......... .......... .......... 15% 52.2M 0s
00:45:33 1000K .......... .......... .......... .......... .......... 15% 29.7M 0s
00:45:33 1050K .......... .......... .......... .......... .......... 16% 15.8M 0s
00:45:33 1100K .......... .......... .......... .......... .......... 17% 36.6M 0s
00:45:33 1150K .......... .......... .......... .......... .......... 18% 16.3M 0s
00:45:33 1200K .......... .......... .......... .......... .......... 18% 182M 0s
00:45:33 1250K .......... .......... .......... .......... .......... 19% 38.5M 0s
00:45:33 1300K .......... .......... .......... .......... .......... 20% 16.0M 0s
00:45:33 1350K .......... .......... .......... .......... .......... 21% 37.2M 0s
00:45:33 1400K .......... .......... .......... .......... .......... 21% 15.2M 0s
00:45:33 1450K .......... .......... .......... .......... .......... 22% 139M 0s
00:45:33 1500K .......... .......... .......... .......... .......... 23% 45.2M 0s
00:45:33 1550K .......... .......... .......... .......... .......... 24% 16.1M 0s
00:45:33 1600K .......... .......... .......... .......... .......... 25% 35.1M 0s
00:45:33 1650K .......... .......... .......... .......... .......... 25% 15.8M 0s
00:45:33 1700K .......... .......... .......... .......... .......... 26% 26.6M 0s
00:45:33 1750K .......... .......... .......... .......... .......... 27% 48.8M 0s
00:45:33 1800K .......... .......... .......... .......... .......... 28% 17.3M 0s
00:45:33 1850K .......... .......... .......... .......... .......... 28% 26.7M 0s
00:45:33 1900K .......... .......... .......... .......... .......... 29% 33.6M 0s
00:45:33 1950K .......... .......... .......... .......... .......... 30% 25.4M 0s
00:45:33 2000K .......... .......... .......... .......... .......... 31% 50.8M 0s
00:45:33 2050K .......... .......... .......... .......... .......... 31% 22.3M 0s
00:45:33 2100K .......... .......... .......... .......... .......... 32% 22.1M 0s
00:45:33 2150K .......... .......... .......... .......... .......... 33% 41.2M 0s
00:45:33 2200K .......... .......... .......... .......... .......... 34% 19.1M 0s
00:45:33 2250K .......... .......... .......... .......... .......... 34% 26.5M 0s
00:45:33 2300K .......... .......... .......... .......... .......... 35% 47.4M 0s
00:45:33 2350K .......... .......... .......... .......... .......... 36% 21.6M 0s
00:45:33 2400K .......... .......... .......... .......... .......... 37% 25.2M 0s
00:45:33 2450K .......... .......... .......... .......... .......... 37% 24.1M 0s
00:45:33 2500K .......... .......... .......... .......... .......... 38% 61.6M 0s
00:45:33 2550K .......... .......... .......... .......... .......... 39% 24.9M 0s
00:45:33 2600K .......... .......... .......... .......... .......... 40% 20.9M 0s
00:45:33 2650K .......... .......... .......... .......... .......... 40% 41.3M 0s
00:45:33 2700K .......... .......... .......... .......... .......... 41% 19.1M 0s
00:45:33 2750K .......... .......... .......... .......... .......... 42% 34.9M 0s
00:45:33 2800K .......... .......... .......... .......... .......... 43% 25.6M 0s
00:45:33 2850K .......... .......... .......... .......... .......... 43% 24.2M 0s
00:45:33 2900K .......... .......... .......... .......... .......... 44% 26.9M 0s
00:45:33 2950K .......... .......... .......... .......... .......... 45% 22.0M 0s
00:45:33 3000K .......... .......... .......... .......... .......... 46% 46.4M 0s
00:45:33 3050K .......... .......... .......... .......... .......... 47% 24.7M 0s
00:45:33 3100K .......... .......... .......... .......... .......... 47% 25.8M 0s
00:45:33 3150K .......... .......... .......... .......... .......... 48% 27.4M 0s
00:45:33 3200K .......... .......... .......... .......... .......... 49% 20.6M 0s
00:45:33 3250K .......... .......... .......... .......... .......... 50% 48.3M 0s
00:45:33 3300K .......... .......... .......... .......... .......... 50% 25.3M 0s
00:45:33 3350K .......... .......... .......... .......... .......... 51% 17.7M 0s
00:45:33 3400K .......... .......... .......... .......... .......... 52% 54.4M 0s
00:45:33 3450K .......... .......... .......... .......... .......... 53% 33.4M 0s
00:45:33 3500K .......... .......... .......... .......... .......... 53% 24.9M 0s
00:45:33 3550K .......... .......... .......... .......... .......... 54% 46.6M 0s
00:45:33 3600K .......... .......... .......... .......... .......... 55% 13.5M 0s
00:45:33 3650K .......... .......... .......... .......... .......... 56% 55.9M 0s
00:45:33 3700K .......... .......... .......... .......... .......... 56% 20.2M 0s
00:45:33 3750K .......... .......... .......... .......... .......... 57% 50.4M 0s
00:45:33 3800K .......... .......... .......... .......... .......... 58% 39.5M 0s
00:45:33 3850K .......... .......... .......... .......... .......... 59% 14.8M 0s
00:45:33 3900K .......... .......... .......... .......... .......... 59% 20.9M 0s
00:45:33 3950K .......... .......... .......... .......... .......... 60% 103M 0s
00:45:33 4000K .......... .......... .......... .......... .......... 61% 25.7M 0s
00:45:33 4050K .......... .......... .......... .......... .......... 62% 46.2M 0s
00:45:33 4100K .......... .......... .......... .......... .......... 62% 12.0M 0s
00:45:33 4150K .......... .......... .......... .......... .......... 63% 33.8M 0s
00:45:33 4200K .......... .......... .......... .......... .......... 64% 88.9M 0s
00:45:33 4250K .......... .......... .......... .......... .......... 65% 25.1M 0s
00:45:33 4300K .......... .......... .......... .......... .......... 65% 44.5M 0s
00:45:33 4350K .......... .......... .......... .......... .......... 66% 46.9M 0s
00:45:33 4400K .......... .......... .......... .......... .......... 67% 10.5M 0s
00:45:33 4450K .......... .......... .......... .......... .......... 68% 46.0M 0s
00:45:33 4500K .......... .......... .......... .......... .......... 69% 42.0M 0s
00:45:33 4550K .......... .......... .......... .......... .......... 69% 42.7M 0s
00:45:33 4600K .......... .......... .......... .......... .......... 70% 17.9M 0s
00:45:33 4650K .......... .......... .......... .......... .......... 71% 17.1M 0s
00:45:33 4700K .......... .......... .......... .......... .......... 72% 37.0M 0s
00:45:33 4750K .......... .......... .......... .......... .......... 72% 48.5M 0s
00:45:33 4800K .......... .......... .......... .......... .......... 73% 25.8M 0s
00:45:33 4850K .......... .......... .......... .......... .......... 74% 25.4M 0s
00:45:33 4900K .......... .......... .......... .......... .......... 75% 15.4M 0s
00:45:33 4950K .......... .......... .......... .......... .......... 75% 53.5M 0s
00:45:33 5000K .......... .......... .......... .......... .......... 76% 44.4M 0s
00:45:33 5050K .......... .......... .......... .......... .......... 77% 27.3M 0s
00:45:34 5100K .......... .......... .......... .......... .......... 78% 23.1M 0s
00:45:34 5150K .......... .......... .......... .......... .......... 78% 17.0M 0s
00:45:34 5200K .......... .......... .......... .......... .......... 79% 25.8M 0s
00:45:34 5250K .......... .......... .......... .......... .......... 80% 65.5M 0s
00:45:34 5300K .......... .......... .......... .......... .......... 81% 28.4M 0s
00:45:34 5350K .......... .......... .......... .......... .......... 81% 30.2M 0s
00:45:34 5400K .......... .......... .......... .......... .......... 82% 39.3M 0s
00:45:34 5450K .......... .......... .......... .......... .......... 83% 13.4M 0s
00:45:34 5500K .......... .......... .......... .......... .......... 84% 65.8M 0s
00:45:34 5550K .......... .......... .......... .......... .......... 84% 27.3M 0s
00:45:34 5600K .......... .......... .......... .......... .......... 85% 29.5M 0s
00:45:34 5650K .......... .......... .......... .......... .......... 86% 44.7M 0s
00:45:34 5700K .......... .......... .......... .......... .......... 87% 11.6M 0s
00:45:34 5750K .......... .......... .......... .......... .......... 87% 54.5M 0s
00:45:34 5800K .......... .......... .......... .......... .......... 88% 52.5M 0s
00:45:34 5850K .......... .......... .......... .......... .......... 89% 27.8M 0s
00:45:34 5900K .......... .......... .......... .......... .......... 90% 25.8M 0s
00:45:34 5950K .......... .......... .......... .......... .......... 91% 14.0M 0s
00:45:34 6000K .......... .......... .......... .......... .......... 91% 52.7M 0s
00:45:34 6050K .......... .......... .......... .......... .......... 92% 30.2M 0s
00:45:34 6100K .......... .......... .......... .......... .......... 93% 22.9M 0s
00:45:34 6150K .......... .......... .......... .......... .......... 94% 62.6M 0s
00:45:34 6200K .......... .......... .......... .......... .......... 94% 14.2M 0s
00:45:34 6250K .......... .......... .......... .......... .......... 95% 33.8M 0s
00:45:34 6300K .......... .......... .......... .......... .......... 96% 41.7M 0s
00:45:34 6350K .......... .......... .......... .......... .......... 97% 22.9M 0s
00:45:34 6400K .......... .......... .......... .......... .......... 97% 59.4M 0s
00:45:34 6450K .......... .......... .......... .......... .......... 98% 13.9M 0s
00:45:34 6500K .......... .......... .......... .......... .......... 99% 44.4M 0s
00:45:34 6550K .......... .......... .......... .......... . 100% 28.5M=0.3s
00:45:34
00:45:34 2026-03-05 00:45:34 (25.1 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/zstd-jni-1.5.5-7.jar’ saved [6749842/6749842]
00:45:34
00:45:34 + wget -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/scalableminds/blosc-java/0.1-1.21.4/blosc-java-0.1-1.21.4.jar
00:45:34 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:45:34 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:45:34 --2026-03-05 00:45:34-- https://repo1.maven.org/maven2/com/scalableminds/blosc-java/0.1-1.21.4/blosc-java-0.1-1.21.4.jar
00:45:34 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ...
00:45:34 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected.
00:45:34 HTTP request sent, awaiting response... 200 OK
00:45:34 Length: 1732435 (1.7M) [application/java-archive]
00:45:34 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/blosc-java-0.1-1.21.4.jar’
00:45:34
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00:45:34 1150K .......... .......... .......... .......... .......... 70% 41.4M 0s
00:45:34 1200K .......... .......... .......... .......... .......... 73% 12.6M 0s
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00:45:34 1650K .......... .......... .......... .......... . 100% 380M=0.08s
00:45:34
00:45:34 2026-03-05 00:45:34 (20.1 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/blosc-java-0.1-1.21.4.jar’ saved [1732435/1732435]
00:45:34
00:45:34 + for x in *.jar
00:45:34 + mv omero-zarr-pixel-buffer-0.6.2-SNAPSHOT.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server
00:45:34 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
00:45:34 ++ deactivate nondestructive
00:45:34 ++ '[' -n '' ']'
00:45:34 ++ '[' -n '' ']'
00:45:34 ++ hash -r
00:45:34 ++ '[' -n '' ']'
00:45:34 ++ unset VIRTUAL_ENV
00:45:34 ++ unset VIRTUAL_ENV_PROMPT
00:45:34 ++ '[' '!' nondestructive = nondestructive ']'
00:45:34 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
00:45:34 ++ export VIRTUAL_ENV
00:45:34 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:45:34 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:45:34 ++ export PATH
00:45:34 ++ '[' -n '' ']'
00:45:34 ++ '[' -z '' ']'
00:45:34 ++ _OLD_VIRTUAL_PS1=
00:45:34 ++ PS1='(.venv3) '
00:45:34 ++ export PS1
00:45:34 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
00:45:34 ++ export VIRTUAL_ENV_PROMPT
00:45:34 ++ hash -r
00:45:34 + pip install -U pip
00:45:34 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
00:45:35 Collecting pip
00:45:35 Using cached pip-26.0.1-py3-none-any.whl (1.8 MB)
00:45:35 Installing collected packages: pip
00:45:35 Attempting uninstall: pip
00:45:35 Found existing installation: pip 22.3.1
00:45:35 Uninstalling pip-22.3.1:
00:45:35 Successfully uninstalled pip-22.3.1
00:45:36 Successfully installed pip-26.0.1
00:45:36 WARNING: There was an error checking the latest version of pip.
00:45:36 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
00:45:36 Collecting zeroc-ice==3.6.5
00:45:36 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
00:45:38 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 20.3 MB/s 0:00:01
00:45:38 Installing collected packages: zeroc-ice
00:45:39 Successfully installed zeroc-ice-3.6.5
00:45:39 + pip install markdown
00:45:40 Collecting markdown
00:45:40 Using cached markdown-3.10.2-py3-none-any.whl.metadata (5.1 kB)
00:45:40 Using cached markdown-3.10.2-py3-none-any.whl (108 kB)
00:45:40 Installing collected packages: markdown
00:45:41 Successfully installed markdown-3.10.2
00:45:41 + pip install reportlab
00:45:41 Collecting reportlab
00:45:41 Using cached reportlab-4.4.10-py3-none-any.whl.metadata (1.7 kB)
00:45:41 Collecting pillow>=9.0.0 (from reportlab)
00:45:41 Using cached pillow-12.1.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.8 kB)
00:45:42 Collecting charset-normalizer (from reportlab)
00:45:42 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (37 kB)
00:45:42 Using cached reportlab-4.4.10-py3-none-any.whl (2.0 MB)
00:45:42 Using cached pillow-12.1.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB)
00:45:42 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB)
00:45:42 Installing collected packages: pillow, charset-normalizer, reportlab
00:45:43
00:45:43 Successfully installed charset-normalizer-3.4.4 pillow-12.1.1 reportlab-4.4.10
00:45:43 + pip install omego
00:45:43 Collecting omego
00:45:43 Using cached omego-0.8.0-py3-none-any.whl.metadata (1.9 kB)
00:45:43 Collecting future (from omego)
00:45:43 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
00:45:43 Collecting yaclifw>=0.1.1 (from omego)
00:45:43 Using cached yaclifw-0.2.0-py3-none-any.whl
00:45:43 Collecting six (from yaclifw>=0.1.1->omego)
00:45:43 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
00:45:43 Using cached omego-0.8.0-py3-none-any.whl (41 kB)
00:45:43 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:45:43 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
00:45:43 Installing collected packages: six, future, yaclifw, omego
00:45:44
00:45:44 Successfully installed future-1.0.0 omego-0.8.0 six-1.17.0 yaclifw-0.2.0
00:45:44 + pip install tables
00:45:44 Collecting tables
00:45:44 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.1 kB)
00:45:44 Collecting numpy>=1.20.0 (from tables)
00:45:44 Using cached numpy-2.4.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB)
00:45:44 Collecting numexpr>=2.6.2 (from tables)
00:45:44 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
00:45:44 Collecting packaging (from tables)
00:45:44 Using cached packaging-26.0-py3-none-any.whl.metadata (3.3 kB)
00:45:44 Collecting py-cpuinfo (from tables)
00:45:44 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
00:45:44 Collecting blosc2>=2.3.0 (from tables)
00:45:44 Using cached blosc2-4.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (6.2 kB)
00:45:44 Collecting ndindex (from blosc2>=2.3.0->tables)
00:45:44 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
00:45:45 Collecting msgpack (from blosc2>=2.3.0->tables)
00:45:45 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
00:45:45 Collecting requests (from blosc2>=2.3.0->tables)
00:45:45 Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB)
00:45:45 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.4.4)
00:45:45 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables)
00:45:45 Using cached idna-3.11-py3-none-any.whl.metadata (8.4 kB)
00:45:45 Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables)
00:45:45 Using cached urllib3-2.6.3-py3-none-any.whl.metadata (6.9 kB)
00:45:45 Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables)
00:45:45 Using cached certifi-2026.2.25-py3-none-any.whl.metadata (2.5 kB)
00:45:45 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (7.2 MB)
00:45:45 Using cached blosc2-4.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (5.2 MB)
00:45:45 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB)
00:45:45 Using cached numpy-2.4.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
00:45:45 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (426 kB)
00:45:45 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
00:45:45 Using cached packaging-26.0-py3-none-any.whl (74 kB)
00:45:45 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
00:45:45 Using cached requests-2.32.5-py3-none-any.whl (64 kB)
00:45:45 Using cached idna-3.11-py3-none-any.whl (71 kB)
00:45:45 Using cached urllib3-2.6.3-py3-none-any.whl (131 kB)
00:45:45 Using cached certifi-2026.2.25-py3-none-any.whl (153 kB)
00:45:45 Installing collected packages: py-cpuinfo, urllib3, packaging, numpy, ndindex, msgpack, idna, certifi, requests, numexpr, blosc2, tables
00:45:48
00:45:48 Successfully installed blosc2-4.1.2 certifi-2026.2.25 idna-3.11 msgpack-1.1.2 ndindex-1.10.1 numexpr-2.14.1 numpy-2.4.2 packaging-26.0 py-cpuinfo-9.0.0 requests-2.32.5 tables-3.11.1 urllib3-2.6.3
00:45:48 + pip install jinja2
00:45:49 Collecting jinja2
00:45:49 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
00:45:49 Collecting MarkupSafe>=2.0 (from jinja2)
00:45:49 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
00:45:49 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
00:45:49 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
00:45:49 Installing collected packages: MarkupSafe, jinja2
00:45:49
00:45:49 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
00:45:49 + pip install omero-py
00:45:49 Collecting omero-py
00:45:49 Using cached omero_py-5.22.0-py3-none-any.whl.metadata (6.5 kB)
00:45:49 Collecting appdirs (from omero-py)
00:45:49 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
00:45:49 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
00:45:49 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.2)
00:45:49 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.1.1)
00:45:49 Collecting PyYAML (from omero-py)
00:45:49 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
00:45:49 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
00:45:49 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.32.5)
00:45:49 Collecting portalocker (from omero-py)
00:45:49 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
00:45:49 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.4)
00:45:49 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.11)
00:45:49 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2.6.3)
00:45:49 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.2.25)
00:45:49 Using cached omero_py-5.22.0-py3-none-any.whl (2.8 MB)
00:45:49 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
00:45:49 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
00:45:49 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
00:45:49 Installing collected packages: appdirs, PyYAML, portalocker, omero-py
00:45:51
00:45:51 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.22.0 portalocker-3.2.0
00:45:51 + pip install pyarrow
00:45:52 Collecting pyarrow
00:45:52 Using cached pyarrow-23.0.1-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (3.1 kB)
00:45:52 Using cached pyarrow-23.0.1-cp311-cp311-manylinux_2_28_x86_64.whl (47.6 MB)
00:45:52 Installing collected packages: pyarrow
00:45:53 Successfully installed pyarrow-23.0.1
00:45:53 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
00:45:54 Collecting omero-metadata
00:45:54 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-umsg1ywg/omero-metadata_a0d7b43e325e4f748a2cd45dafea2248
00:45:54 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-umsg1ywg/omero-metadata_a0d7b43e325e4f748a2cd45dafea2248
00:45:55 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 6121cfce12d747878e4763f86279151da3574f40
00:45:55 Installing build dependencies: started
00:45:56 Installing build dependencies: finished with status 'done'
00:45:56 Getting requirements to build wheel: started
00:45:56 Getting requirements to build wheel: finished with status 'done'
00:45:56 Preparing metadata (pyproject.toml): started
00:45:56 Preparing metadata (pyproject.toml): finished with status 'done'
00:45:56 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.22.0)
00:45:56 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.3)
00:45:56 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6)
00:45:56 Collecting pandas (from omero-metadata)
00:45:56 Using cached pandas-3.0.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (79 kB)
00:45:56 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
00:45:56 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
00:45:56 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.4.2)
00:45:56 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.1.1)
00:45:56 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
00:45:56 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.5)
00:45:56 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0)
00:45:56 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.3)
00:45:56 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata)
00:45:56 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
00:45:56 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0)
00:45:56 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.4)
00:45:56 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.11)
00:45:56 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.6.3)
00:45:56 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.2.25)
00:45:56 Using cached pandas-3.0.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (11.3 MB)
00:45:56 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
00:45:57 Building wheels for collected packages: omero-metadata
00:45:57 Building wheel for omero-metadata (pyproject.toml): started
00:45:57 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
00:45:57 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39376 sha256=fe06fec0b0bdab8d4762f3898d4bbc7b4b22e51029c1ab63c8381e8b6cc0c605
00:45:57 Stored in directory: /tmp/pip-ephem-wheel-cache-5ixu7gc1/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
00:45:57 Successfully built omero-metadata
00:45:57 Installing collected packages: python-dateutil, pandas, omero-metadata
00:46:01
00:46:01 Successfully installed omero-metadata-0.13.1.dev0 pandas-3.0.1 python-dateutil-2.9.0.post0
00:46:01 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
00:46:02 Collecting omero-cli-render
00:46:02 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-nf_gtb7_/omero-cli-render_a36fd9aa60624b8d83934ca9389acd56
00:46:02 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-nf_gtb7_/omero-cli-render_a36fd9aa60624b8d83934ca9389acd56
00:46:03 Running command git checkout -b merge_ci --track origin/merge_ci
00:46:03 Switched to a new branch 'merge_ci'
00:46:03 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:46:03 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 2adbed6096dbea98289bf1fe6432ac9433d4a132
00:46:03 Installing build dependencies: started
00:46:04 Installing build dependencies: finished with status 'done'
00:46:04 Getting requirements to build wheel: started
00:46:04 Getting requirements to build wheel: finished with status 'done'
00:46:04 Preparing metadata (pyproject.toml): started
00:46:04 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:04 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3)
00:46:04 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.22.0)
00:46:04 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
00:46:04 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
00:46:04 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.2)
00:46:04 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.1.1)
00:46:04 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
00:46:04 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.5)
00:46:04 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0)
00:46:04 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.4)
00:46:04 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.11)
00:46:04 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.6.3)
00:46:04 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.2.25)
00:46:04 Building wheels for collected packages: omero-cli-render
00:46:04 Building wheel for omero-cli-render (pyproject.toml): started
00:46:04 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
00:46:04 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19840 sha256=af35074fc8c7459ad462e09afcbb75471e15a9252ca7f0aa36b4488c497e8c5c
00:46:04 Stored in directory: /tmp/pip-ephem-wheel-cache-f0ua3n46/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
00:46:04 Successfully built omero-cli-render
00:46:04 Installing collected packages: omero-cli-render
00:46:04 Successfully installed omero-cli-render-0.8.2.dev0
00:46:05 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
00:46:05 Collecting omero-cli-duplicate
00:46:05 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-p4yw3xxi/omero-cli-duplicate_3cbf8c222cb7496e9aa4b6e152a0c0e9
00:46:05 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-p4yw3xxi/omero-cli-duplicate_3cbf8c222cb7496e9aa4b6e152a0c0e9
00:46:06 Running command git checkout -b merge_ci --track origin/merge_ci
00:46:06 Switched to a new branch 'merge_ci'
00:46:06 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:46:06 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit b791199780e7b26381d504e904d6df5f6f638edf
00:46:06 Installing build dependencies: started
00:46:07 Installing build dependencies: finished with status 'done'
00:46:07 Getting requirements to build wheel: started
00:46:07 Getting requirements to build wheel: finished with status 'done'
00:46:07 Preparing metadata (pyproject.toml): started
00:46:07 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:07 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.22.0)
00:46:07 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
00:46:07 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
00:46:07 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.2)
00:46:07 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.1.1)
00:46:07 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3)
00:46:07 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
00:46:07 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.5)
00:46:07 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0)
00:46:07 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.4)
00:46:07 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.11)
00:46:07 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.6.3)
00:46:07 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.2.25)
00:46:07 Building wheels for collected packages: omero-cli-duplicate
00:46:07 Building wheel for omero-cli-duplicate (pyproject.toml): started
00:46:07 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
00:46:07 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11539 sha256=fd65bd0417b112b86891af35d2be6e9d7fa4a0a0cc9977d11092ccb46561846c
00:46:07 Stored in directory: /tmp/pip-ephem-wheel-cache-skeidxat/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
00:46:07 Successfully built omero-cli-duplicate
00:46:07 Installing collected packages: omero-cli-duplicate
00:46:07 Successfully installed omero-cli-duplicate-0.4.1.dev0
00:46:08 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr
00:46:08 Collecting omero-cli-zarr
00:46:08 Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-n2e_2hp_/omero-cli-zarr_3d01e557fbc34304a83f617739ffb936
00:46:08 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-n2e_2hp_/omero-cli-zarr_3d01e557fbc34304a83f617739ffb936
00:46:09 Running command git checkout -b merge_ci --track origin/merge_ci
00:46:09 Switched to a new branch 'merge_ci'
00:46:09 branch 'merge_ci' set up to track 'origin/merge_ci'.
00:46:09 Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit 56283714a6df684e4ada3d07072d2c7aa6f92d67
00:46:09 Installing build dependencies: started
00:46:10 Installing build dependencies: finished with status 'done'
00:46:10 Getting requirements to build wheel: started
00:46:10 Getting requirements to build wheel: finished with status 'done'
00:46:10 Installing backend dependencies: started
00:46:11 Installing backend dependencies: finished with status 'done'
00:46:11 Preparing metadata (pyproject.toml): started
00:46:11 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:11 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.22.0)
00:46:12 Collecting ome-zarr>=0.13.0 (from omero-cli-zarr)
00:46:12 Using cached ome_zarr-0.13.0-py3-none-any.whl.metadata (2.9 kB)
00:46:12 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.4.2)
00:46:12 Collecting dask<=2026.1.1,>=2025.12.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
00:46:12 Using cached dask-2026.1.1-py3-none-any.whl.metadata (3.8 kB)
00:46:12 Collecting zarr>=3.0.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
00:46:12 Using cached zarr-3.1.5-py3-none-any.whl.metadata (10 kB)
00:46:12 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:12 Using cached fsspec-2026.2.0-py3-none-any.whl.metadata (10 kB)
00:46:12 Collecting aiohttp (from ome-zarr>=0.13.0->omero-cli-zarr)
00:46:12 Using cached aiohttp-3.13.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
00:46:12 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.32.5)
00:46:12 Collecting scikit-image>=0.19.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
00:46:12 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB)
00:46:12 Collecting toolz (from ome-zarr>=0.13.0->omero-cli-zarr)
00:46:12 Using cached toolz-1.1.0-py3-none-any.whl.metadata (5.1 kB)
00:46:13 Collecting rangehttpserver (from ome-zarr>=0.13.0->omero-cli-zarr)
00:46:13 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl.metadata (769 bytes)
00:46:13 Collecting click>=8.1 (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:13 Using cached click-8.3.1-py3-none-any.whl.metadata (2.6 kB)
00:46:13 Collecting cloudpickle>=3.0.0 (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:13 Using cached cloudpickle-3.1.2-py3-none-any.whl.metadata (7.1 kB)
00:46:13 Requirement already satisfied: packaging>=20.0 in ./.venv3/lib64/python3.11/site-packages (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr) (26.0)
00:46:13 Collecting partd>=1.4.0 (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:13 Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB)
00:46:13 Requirement already satisfied: pyyaml>=5.3.1 in ./.venv3/lib64/python3.11/site-packages (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr) (6.0.3)
00:46:13 Collecting importlib_metadata>=4.13.0 (from dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:13 Using cached importlib_metadata-8.7.1-py3-none-any.whl.metadata (4.7 kB)
00:46:13 Collecting s3fs>2024.2.0 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:13 Using cached s3fs-2026.2.0-py3-none-any.whl.metadata (1.2 kB)
00:46:13 Collecting zipp>=3.20 (from importlib_metadata>=4.13.0->dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:13 Using cached zipp-3.23.0-py3-none-any.whl.metadata (3.6 kB)
00:46:13 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.4.4)
00:46:13 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.0.0)
00:46:13 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (12.1.1)
00:46:13 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.6.5)
00:46:13 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.2.0)
00:46:13 Collecting locket (from partd>=1.4.0->dask<=2026.1.1,>=2025.12.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:13 Using cached locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB)
00:46:13 Collecting aiobotocore<4.0.0,>=2.19.0 (from s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:13 Downloading aiobotocore-3.2.1-py3-none-any.whl.metadata (26 kB)
00:46:13 Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:13 Using cached aioitertools-0.13.0-py3-none-any.whl.metadata (3.3 kB)
00:46:13 Collecting botocore<1.42.62,>=1.42.53 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:13 Downloading botocore-1.42.61-py3-none-any.whl.metadata (5.9 kB)
00:46:13 Requirement already satisfied: python-dateutil<3.0.0,>=2.1 in ./.venv3/lib64/python3.11/site-packages (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (2.9.0.post0)
00:46:13 Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:13 Using cached jmespath-1.1.0-py3-none-any.whl.metadata (7.6 kB)
00:46:14 Collecting multidict<7.0.0,>=6.0.0 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:14 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (5.3 kB)
00:46:14 Collecting wrapt<3.0.0,>=1.10.10 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:14 Using cached wrapt-2.1.1-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (7.4 kB)
00:46:14 Collecting aiohappyeyeballs>=2.5.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:14 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl.metadata (5.9 kB)
00:46:14 Collecting aiosignal>=1.4.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:14 Using cached aiosignal-1.4.0-py3-none-any.whl.metadata (3.7 kB)
00:46:14 Collecting attrs>=17.3.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:14 Using cached attrs-25.4.0-py3-none-any.whl.metadata (10 kB)
00:46:14 Collecting frozenlist>=1.1.1 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:14 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (20 kB)
00:46:14 Collecting propcache>=0.2.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:14 Using cached propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (13 kB)
00:46:14 Collecting yarl<2.0,>=1.17.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:14 Using cached yarl-1.23.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (79 kB)
00:46:14 Requirement already satisfied: urllib3!=2.2.0,<3,>=1.25.4 in ./.venv3/lib64/python3.11/site-packages (from botocore<1.42.62,>=1.42.53->aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (2.6.3)
00:46:14 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil<3.0.0,>=2.1->aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (1.17.0)
00:46:14 Requirement already satisfied: idna>=2.0 in ./.venv3/lib64/python3.11/site-packages (from yarl<2.0,>=1.17.0->aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) (3.11)
00:46:14 Collecting typing-extensions>=4.2 (from aiosignal>=1.4.0->aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:14 Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB)
00:46:15 Collecting scipy>=1.11.4 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:15 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (62 kB)
00:46:15 Collecting networkx>=3.0 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:15 Using cached networkx-3.6.1-py3-none-any.whl.metadata (6.8 kB)
00:46:15 Collecting imageio!=2.35.0,>=2.33 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:15 Using cached imageio-2.37.2-py3-none-any.whl.metadata (9.7 kB)
00:46:15 Collecting tifffile>=2022.8.12 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:15 Using cached tifffile-2026.3.3-py3-none-any.whl.metadata (31 kB)
00:46:15 Collecting lazy-loader>=0.4 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:15 Using cached lazy_loader-0.4-py3-none-any.whl.metadata (7.6 kB)
00:46:15 Collecting donfig>=0.8 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:15 Using cached donfig-0.8.1.post1-py3-none-any.whl.metadata (5.0 kB)
00:46:15 Collecting google-crc32c>=1.5 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:15 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl.metadata (1.7 kB)
00:46:15 Collecting numcodecs>=0.14 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
00:46:15 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (3.4 kB)
00:46:15 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (3.4.4)
00:46:15 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (2026.2.25)
00:46:15 Using cached ome_zarr-0.13.0-py3-none-any.whl (42 kB)
00:46:15 Using cached dask-2026.1.1-py3-none-any.whl (1.5 MB)
00:46:15 Using cached click-8.3.1-py3-none-any.whl (108 kB)
00:46:15 Using cached cloudpickle-3.1.2-py3-none-any.whl (22 kB)
00:46:15 Using cached fsspec-2026.2.0-py3-none-any.whl (202 kB)
00:46:15 Using cached importlib_metadata-8.7.1-py3-none-any.whl (27 kB)
00:46:15 Using cached partd-1.4.2-py3-none-any.whl (18 kB)
00:46:15 Using cached s3fs-2026.2.0-py3-none-any.whl (31 kB)
00:46:15 Downloading aiobotocore-3.2.1-py3-none-any.whl (87 kB)
00:46:15 Using cached aiohttp-3.13.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.7 MB)
00:46:15 Using cached aioitertools-0.13.0-py3-none-any.whl (24 kB)
00:46:15 Downloading botocore-1.42.61-py3-none-any.whl (14.6 MB)
00:46:16 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 14.6/14.6 MB 19.9 MB/s 0:00:00
00:46:16 Using cached jmespath-1.1.0-py3-none-any.whl (20 kB)
00:46:16 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (246 kB)
00:46:16 Using cached wrapt-2.1.1-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (113 kB)
00:46:16 Using cached yarl-1.23.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (102 kB)
00:46:16 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl (15 kB)
00:46:16 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB)
00:46:16 Using cached attrs-25.4.0-py3-none-any.whl (67 kB)
00:46:16 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB)
00:46:16 Using cached propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (210 kB)
00:46:16 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB)
00:46:16 Using cached imageio-2.37.2-py3-none-any.whl (317 kB)
00:46:16 Using cached lazy_loader-0.4-py3-none-any.whl (12 kB)
00:46:16 Using cached networkx-3.6.1-py3-none-any.whl (2.1 MB)
00:46:16 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.3 MB)
00:46:16 Using cached tifffile-2026.3.3-py3-none-any.whl (243 kB)
00:46:16 Using cached toolz-1.1.0-py3-none-any.whl (58 kB)
00:46:16 Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB)
00:46:16 Using cached zarr-3.1.5-py3-none-any.whl (284 kB)
00:46:16 Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB)
00:46:16 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl (33 kB)
00:46:16 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (9.1 MB)
00:46:16 Using cached zipp-3.23.0-py3-none-any.whl (10 kB)
00:46:16 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB)
00:46:16 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl (7.8 kB)
00:46:16 Building wheels for collected packages: omero-cli-zarr
00:46:16 Building wheel for omero-cli-zarr (pyproject.toml): started
00:46:16 Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done'
00:46:16 Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev160+g5628371-py3-none-any.whl size=38172 sha256=c73f1d60a5e2c12b349f027640305a2b6b08d59a6c5dacd635ffe21ecdf032b2
00:46:16 Stored in directory: /tmp/pip-ephem-wheel-cache-vh69r0vc/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529
00:46:16 Successfully built omero-cli-zarr
00:46:16 Installing collected packages: rangehttpserver, zipp, wrapt, typing-extensions, toolz, tifffile, scipy, propcache, networkx, multidict, locket, lazy-loader, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, yarl, scikit-image, partd, numcodecs, importlib_metadata, botocore, aiosignal, zarr, dask, aiohttp, aiobotocore, s3fs, ome-zarr, omero-cli-zarr
00:46:28
00:46:28 Successfully installed aiobotocore-3.2.1 aiohappyeyeballs-2.6.1 aiohttp-3.13.3 aioitertools-0.13.0 aiosignal-1.4.0 attrs-25.4.0 botocore-1.42.61 click-8.3.1 cloudpickle-3.1.2 dask-2026.1.1 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.2.0 google-crc32c-1.8.0 imageio-2.37.2 importlib_metadata-8.7.1 jmespath-1.1.0 lazy-loader-0.4 locket-1.0.0 multidict-6.7.1 networkx-3.6.1 numcodecs-0.16.5 ome-zarr-0.13.0 omero-cli-zarr-0.5.5.dev160+g5628371 partd-1.4.2 propcache-0.4.1 rangehttpserver-1.4.0 s3fs-2026.2.0 scikit-image-0.26.0 scipy-1.17.1 tifffile-2026.3.3 toolz-1.1.0 typing-extensions-4.15.0 wrapt-2.1.1 yarl-1.23.0 zarr-3.1.5 zipp-3.23.0
00:46:28 + pip install omero-certificates
00:46:29 Collecting omero-certificates
00:46:29 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
00:46:29 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.22.0)
00:46:29 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
00:46:29 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
00:46:29 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.2)
00:46:29 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.1.1)
00:46:29 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3)
00:46:29 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
00:46:29 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.5)
00:46:29 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0)
00:46:29 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.4)
00:46:29 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.11)
00:46:29 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.6.3)
00:46:29 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.2.25)
00:46:29 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
00:46:29 Installing collected packages: omero-certificates
00:46:29 Successfully installed omero-certificates-0.4.0
00:46:29 + for x in *.tar.gz
00:46:29 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
00:46:29 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
00:46:29 Installing build dependencies: started
00:46:30 Installing build dependencies: finished with status 'done'
00:46:30 Getting requirements to build wheel: started
00:46:30 Getting requirements to build wheel: finished with status 'done'
00:46:30 Preparing metadata (pyproject.toml): started
00:46:30 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:30 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.22.0)
00:46:30 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
00:46:30 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
00:46:30 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.2)
00:46:30 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.1.1)
00:46:30 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3)
00:46:30 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
00:46:30 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.5)
00:46:30 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0)
00:46:30 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.4)
00:46:30 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.11)
00:46:30 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.6.3)
00:46:30 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.2.25)
00:46:30 Building wheels for collected packages: omero-dropbox
00:46:30 Building wheel for omero-dropbox (pyproject.toml): started
00:46:31 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
00:46:31 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49155 sha256=349de12d29f4af2961a8fbf408681036a88da8a3223cc3ac42a532ee6117a832
00:46:31 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
00:46:31 Successfully built omero-dropbox
00:46:31 Installing collected packages: omero-dropbox
00:46:31 Successfully installed omero-dropbox-5.7.1.dev0
00:46:31 + for x in *.tar.gz
00:46:31 + pip install -U omero_marshal-0.9.2.dev0.tar.gz
00:46:31 Processing ./omero_marshal-0.9.2.dev0.tar.gz
00:46:31 Installing build dependencies: started
00:46:32 Installing build dependencies: finished with status 'done'
00:46:32 Getting requirements to build wheel: started
00:46:32 Getting requirements to build wheel: finished with status 'done'
00:46:32 Preparing metadata (pyproject.toml): started
00:46:33 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:33 Building wheels for collected packages: omero_marshal
00:46:33 Building wheel for omero_marshal (pyproject.toml): started
00:46:33 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
00:46:33 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88131 sha256=e2b8bf1eb9b2ef8a1392b420eb3aee61699e303e99a0d6d2e0416da785f93d9c
00:46:33 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230
00:46:33 Successfully built omero_marshal
00:46:33 Installing collected packages: omero_marshal
00:46:33 Successfully installed omero_marshal-0.9.2.dev0
00:46:33 + for x in *.tar.gz
00:46:33 + pip install -U omero_py-5.22.1.dev0.tar.gz
00:46:33 Processing ./omero_py-5.22.1.dev0.tar.gz
00:46:34 Installing build dependencies: started
00:46:34 Installing build dependencies: finished with status 'done'
00:46:34 Getting requirements to build wheel: started
00:46:35 Getting requirements to build wheel: finished with status 'done'
00:46:35 Preparing metadata (pyproject.toml): started
00:46:35 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:35 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (1.4.4)
00:46:35 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (1.0.0)
00:46:35 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (2.4.2)
00:46:35 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (12.1.1)
00:46:35 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (6.0.3)
00:46:35 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (3.6.5)
00:46:35 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (2.32.5)
00:46:35 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.1.dev0) (3.2.0)
00:46:35 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.1.dev0) (3.4.4)
00:46:35 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.1.dev0) (3.11)
00:46:35 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.1.dev0) (2.6.3)
00:46:35 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.1.dev0) (2026.2.25)
00:46:35 Building wheels for collected packages: omero-py
00:46:35 Building wheel for omero-py (pyproject.toml): started
00:46:36 Building wheel for omero-py (pyproject.toml): finished with status 'done'
00:46:36 Created wheel for omero-py: filename=omero_py-5.22.1.dev0-py3-none-any.whl size=2786653 sha256=5dc2aa384272a284ef5f01ea315061aa1e52e7d2ba8887973f34b721b0f0fa50
00:46:36 Stored in directory: /home/omero/.cache/pip/wheels/e5/0d/4a/1d505358a194b66ce24f7dc55acc515e437e72953730429407
00:46:36 Successfully built omero-py
00:46:36 Installing collected packages: omero-py
00:46:36 Attempting uninstall: omero-py
00:46:36 Found existing installation: omero-py 5.22.0
00:46:36 Uninstalling omero-py-5.22.0:
00:46:37 Successfully uninstalled omero-py-5.22.0
00:46:38 Successfully installed omero-py-5.22.1.dev0
00:46:39 + for x in *.tar.gz
00:46:39 + pip install -U omero_scripts-5.10.1.dev0.tar.gz
00:46:39 Processing ./omero_scripts-5.10.1.dev0.tar.gz
00:46:39 Installing build dependencies: started
00:46:40 Installing build dependencies: finished with status 'done'
00:46:40 Getting requirements to build wheel: started
00:46:41 Getting requirements to build wheel: finished with status 'done'
00:46:41 Preparing metadata (pyproject.toml): started
00:46:41 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:41 Building wheels for collected packages: omero-scripts
00:46:41 Building wheel for omero-scripts (pyproject.toml): started
00:46:41 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
00:46:41 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=137002 sha256=51281610ea07ebbfafe87b38d6f8d58fb819932844c0ee2a65da3f3830136b6e
00:46:41 Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e
00:46:41 Successfully built omero-scripts
00:46:41 Installing collected packages: omero-scripts
00:46:41 Successfully installed omero-scripts-5.10.1.dev0
00:46:41 + for x in *.tar.gz
00:46:41 + pip install -U omero_web-5.31.1.dev0.tar.gz
00:46:42 Processing ./omero_web-5.31.1.dev0.tar.gz
00:46:42 Installing build dependencies: started
00:46:43 Installing build dependencies: finished with status 'done'
00:46:43 Getting requirements to build wheel: started
00:46:43 Getting requirements to build wheel: finished with status 'done'
00:46:43 Preparing metadata (pyproject.toml): started
00:46:43 Preparing metadata (pyproject.toml): finished with status 'done'
00:46:43 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (5.22.1.dev0)
00:46:43 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.31.1.dev0)
00:46:43 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl.metadata (27 kB)
00:46:44 Collecting Django<5.3,>=5.2.9 (from omero-web==5.31.1.dev0)
00:46:44 Using cached django-5.2.12-py3-none-any.whl.metadata (4.1 kB)
00:46:44 Collecting django-pipeline>=4.1.0 (from omero-web==5.31.1.dev0)
00:46:44 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
00:46:44 Collecting django-cors-headers==3.7.0 (from omero-web==5.31.1.dev0)
00:46:44 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
00:46:44 Collecting whitenoise>=5.3.0 (from omero-web==5.31.1.dev0)
00:46:44 Using cached whitenoise-6.12.0-py3-none-any.whl.metadata (3.7 kB)
00:46:44 Collecting gunicorn>=19.3 (from omero-web==5.31.1.dev0)
00:46:44 Using cached gunicorn-25.1.0-py3-none-any.whl.metadata (5.5 kB)
00:46:44 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (0.9.2.dev0)
00:46:44 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (12.1.1)
00:46:44 Collecting pytz (from omero-web==5.31.1.dev0)
00:46:44 Using cached pytz-2026.1.post1-py2.py3-none-any.whl.metadata (22 kB)
00:46:44 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (3.2.0)
00:46:44 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (26.0)
00:46:44 Collecting importlib-resources (from omero-web==5.31.1.dev0)
00:46:44 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
00:46:44 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.31.1.dev0)
00:46:44 Using cached asgiref-3.11.1-py3-none-any.whl.metadata (9.3 kB)
00:46:44 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.31.1.dev0)
00:46:44 Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB)
00:46:44 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.31.1.dev0) (65.5.1)
00:46:44 Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.31.1.dev0)
00:46:44 Using cached wheel-0.46.3-py3-none-any.whl.metadata (2.4 kB)
00:46:44 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (1.4.4)
00:46:44 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (1.0.0)
00:46:44 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (2.4.2)
00:46:44 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (6.0.3)
00:46:44 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (3.6.5)
00:46:44 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (2.32.5)
00:46:44 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (3.4.4)
00:46:44 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (3.11)
00:46:44 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (2.6.3)
00:46:44 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (2026.2.25)
00:46:44 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
00:46:44 Using cached django-5.2.12-py3-none-any.whl (8.3 MB)
00:46:44 Using cached asgiref-3.11.1-py3-none-any.whl (24 kB)
00:46:44 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl (32 kB)
00:46:44 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
00:46:44 Using cached gunicorn-25.1.0-py3-none-any.whl (197 kB)
00:46:44 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB)
00:46:44 Using cached whitenoise-6.12.0-py3-none-any.whl (20 kB)
00:46:44 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
00:46:44 Using cached pytz-2026.1.post1-py2.py3-none-any.whl (510 kB)
00:46:44 Using cached wheel-0.46.3-py3-none-any.whl (30 kB)
00:46:44 Building wheels for collected packages: omero-web
00:46:44 Building wheel for omero-web (pyproject.toml): started
00:46:45 Building wheel for omero-web (pyproject.toml): finished with status 'done'
00:46:45 Created wheel for omero-web: filename=omero_web-5.31.1.dev0-py3-none-any.whl size=2819307 sha256=2eed5b058f4839f5242091813d6a0a786172288e4fac15e48c563e80b2833474
00:46:45 Stored in directory: /home/omero/.cache/pip/wheels/48/a3/5b/968853abf49b64e1726fdb37874d77f08ddad2d06b53de06b3
00:46:45 Successfully built omero-web
00:46:45 Installing collected packages: pytz, whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
00:46:48
00:46:48 Successfully installed Django-5.2.12 asgiref-3.11.1 concurrent-log-handler-0.9.29 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-25.1.0 importlib-resources-6.5.2 omero-web-5.31.1.dev0 pytz-2026.1.post1 sqlparse-0.5.5 wheel-0.46.3 whitenoise-6.12.0
00:46:48 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
00:46:48 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
00:46:48 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
00:46:48 --2026-03-05 00:46:48-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
00:46:48 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.108.133, 185.199.110.133, 185.199.109.133, ...
00:46:48 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.108.133|:443... connected.
00:46:48 HTTP request sent, awaiting response... 200 OK
00:46:48 Length: 135020 (132K) [text/plain]
00:46:48 Saving to: ‘Figure_To_Pdf.py’
00:46:48
00:46:48 0K .......... .......... .......... .......... .......... 37% 3.88M 0s
00:46:48 50K .......... .......... .......... .......... .......... 75% 13.5M 0s
00:46:48 100K .......... .......... .......... . 100% 5.80M=0.02s
00:46:48
00:46:48 2026-03-05 00:46:48 (5.97 MB/s) - ‘Figure_To_Pdf.py’ saved [135020/135020]
00:46:48
00:46:48 + chmod 755 Figure_To_Pdf.py
00:46:48 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
00:46:48 + omero config set omero.db.name OMERO-server
00:46:50 + omero config set omero.db.host pg
00:46:52 + omero config set omero.db.user postgres
00:46:54 + omero config set omero.data.dir /home/omero/omero-server-data
00:46:56 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
00:46:58 + omero config set omero.db.poolsize 25
00:47:01 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
00:47:03 + omero config set omero.security.trustStorePassword changeit
00:47:05 + omero config set omero.mail.config true
00:47:07 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
00:47:09 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
00:47:11 + omero certificates
00:47:12 OpenSSL 3.5.1 1 Jul 2025 (Library: OpenSSL 3.5.1 1 Jul 2025)
00:47:12 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
00:47:13 + '[' false = true ']'
00:47:13 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
00:47:13 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
00:47:13 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
00:47:13 2026-03-05 00:47:13,148 [ omego.db] DEBUG dbcommand => upgrade
00:47:13 2026-03-05 00:47:13,148 [ omego.db] DEBUG dbhost => localhost
00:47:13 2026-03-05 00:47:13,148 [ omego.db] DEBUG dbname => OMERO-server
00:47:13 2026-03-05 00:47:13,148 [ omego.db] DEBUG dbpass => omero
00:47:13 2026-03-05 00:47:13,148 [ omego.db] DEBUG dbuser => omero
00:47:13 2026-03-05 00:47:13,148 [ omego.db] DEBUG rootpass => omero
00:47:13 2026-03-05 00:47:13,148 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
00:47:13 2026-03-05 00:47:13,148 [omego.extern] INFO Executing : omero version
00:47:14 OMERO.py version:
00:47:14 OMERO.server version:
00:47:14 5.6.3-594-73f6e870cb-ice36-b71
00:47:14 5.22.1.dev0
00:47:15 2026-03-05 00:47:15,143 [omego.extern] INFO Completed [1.994 s]
00:47:15 2026-03-05 00:47:15,143 [omego.extern] DEBUG Using omero CLI from omero
00:47:15 2026-03-05 00:47:15,143 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
00:47:15 2026-03-05 00:47:15,143 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:47:15 2026-03-05 00:47:15,143 [omego.extern] INFO Executing : omero config get --show-password
00:47:17 2026-03-05 00:47:17,094 [omego.extern] INFO Completed [1.951 s]
00:47:17 2026-03-05 00:47:17,095 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:47:17 2026-03-05 00:47:17,095 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
00:47:17 2026-03-05 00:47:17,100 [omego.extern] INFO Completed [0.005 s]
00:47:17 2026-03-05 00:47:17,100 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.11\n'
00:47:17 2026-03-05 00:47:17,101 [ omego.db] INFO psql version: psql (PostgreSQL) 16.11
00:47:17
00:47:17 2026-03-05 00:47:17,101 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:47:17 2026-03-05 00:47:17,101 [omego.extern] INFO Executing : omero config get --show-password
00:47:19 2026-03-05 00:47:19,044 [omego.extern] INFO Completed [1.943 s]
00:47:19 2026-03-05 00:47:19,044 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:47:19 2026-03-05 00:47:19,044 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
00:47:19 2026-03-05 00:47:19,053 [omego.extern] INFO Completed [0.009 s]
00:47:19 2026-03-05 00:47:19,053 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.2") at port "5432".\n'
00:47:19 2026-03-05 00:47:19,054 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:47:19 2026-03-05 00:47:19,054 [omego.extern] INFO Running [current environment]: omero config get --show-password
00:47:19 2026-03-05 00:47:19,054 [omego.extern] INFO Executing : omero config get --show-password
00:47:20 2026-03-05 00:47:20,992 [omego.extern] INFO Completed [1.938 s]
00:47:20 2026-03-05 00:47:20,992 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
00:47:20 2026-03-05 00:47:20,992 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
00:47:21 2026-03-05 00:47:21,002 [omego.extern] INFO Completed [0.010 s]
00:47:21 2026-03-05 00:47:21,002 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
00:47:21 2026-03-05 00:47:21,002 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
00:47:21 2026-03-05 00:47:21,004 [ omego.db] INFO Database is already at OMERO5.4__0
00:47:21 + export LANG=en_US.UTF-8
00:47:21 + LANG=en_US.UTF-8
00:47:21 + export LANGUAGE=en_US:en
00:47:21 + LANGUAGE=en_US:en
00:47:21 + export LC_ALL=en_US.UTF-8
00:47:21 + LC_ALL=en_US.UTF-8
00:47:21 + BUILD_ID=DONT_KILL_ME
00:47:21 + omero admin start
00:47:26 No descriptor given. Using etc/grid/default.xml
00:47:33 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
00:47:33 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
00:47:33 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
00:47:33 Waiting on startup. Use CTRL-C to exit
00:47:33 + omero admin waitup
00:47:35 Waiting on startup. Use CTRL-C to exit
00:47:35 + omero admin diagnostics
00:47:37
00:47:37 ================================================================================
00:47:37 OMERO Diagnostics (admin)
00:47:37 ================================================================================
00:47:37
00:47:37 Commands: java -version 17.0.17 (/usr/bin/java)
00:47:37 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
00:47:37 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
00:47:37 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
00:47:37 Commands: psql --version 16.11 (/usr/bin/psql)
00:47:37 Commands: openssl version 3.5.11 (/usr/bin/openssl)
00:47:37
00:47:37 Component: OMERO.py 5.22.1.dev0
00:47:37 Component: OMERO.server 5.6.3-594-73f6e870cb-ice36-b71
00:47:37
00:47:37 Server: icegridnode running
00:47:37 Server: Blitz-0 active (pid = 18171, enabled)
00:47:37 Server: Indexer-0 activating (enabled)
00:47:37 Server: OMERO.Glacier2 active (pid = 18205, enabled)
00:47:37 Server: OMERO.IceStorm active (pid = 18232, enabled)
00:47:37 Server: Processor-0 active (pid = 18221, enabled)
00:47:37 Server: Tables-0 active (pid = 18233, enabled)
00:47:37
00:47:37 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
00:47:37 Log files: Blitz-0.log 30.5 KB errors=0 warnings=1
00:47:37 Log files: DropBox.log n/a
00:47:37 Log files: FileServer.log n/a
00:47:37 Log files: Indexer-0.log 238 B
00:47:37 Log files: MonitorServer.log n/a
00:47:37 Log files: Processor-0.log 735 B
00:47:37 Log files: Tables-0.log 961 B
00:47:37 Log files: TestDropBox.log n/a
00:47:37 Log files: master.err empty
00:47:37 Log files: master.out 30.1 KB
00:47:37 Log files: Total size 0.06 MB
00:47:37
00:47:37
00:47:37 Environment:OMERO_HOME=(unset)
00:47:37 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
00:47:37 Environment:OMERO_NODE=(unset)
00:47:37 Environment:OMERO_MASTER=(unset)
00:47:37 Environment:OMERO_USERDIR=(unset)
00:47:37 Environment:OMERO_TMPDIR=(unset)
00:47:37 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:47:37 Environment:PYTHONPATH=(unset)
00:47:37 Environment:ICE_HOME=/opt/ice-3.6.5
00:47:37 Environment:LD_LIBRARY_PATH=(unset)
00:47:37 Environment:DYLD_LIBRARY_PATH=(unset)
00:47:37
00:47:37 OMERO SSL port:4064
00:47:37 OMERO TCP port:4063
00:47:37 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
00:47:37 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
00:47:37
00:47:37 JVM settings: Blitz-${index} -Xmx7200m
00:47:37 JVM settings: Indexer-${index} -Xmx4800m
00:47:37 JVM settings: PixelData-${index} -Xmx7200m
00:47:37 JVM settings: Repository-${index} -Xmx4800m
00:47:37
00:47:37 Jar: lib/server/formats-api.jar Bio-Formats API 8.5.0-SNAPSHOT 5 March 2026 e2619dfcf2e58c267c168a112602c6449477c9c7
00:47:37 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.5.0-SNAPSHOT 5 March 2026 e2619dfcf2e58c267c168a112602c6449477c9c7
00:47:37 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.5.0-SNAPSHOT 5 March 2026 e2619dfcf2e58c267c168a112602c6449477c9c7
00:47:37 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.4-SNAPSHOT 5 March 2026 286abebe9e592f26ec9ce318b572cc35668b0cf6
00:47:37 Jar: lib/server/ome-common.jar OME Common Java 6.2.2-SNAPSHOT 5 March 2026 286abebe9e592f26ec9ce318b572cc35668b0cf6
00:47:37 Jar: lib/server/ome-jai.jar OME JAI 0.1.6-SNAPSHOT 5 March 2026 286abebe9e592f26ec9ce318b572cc35668b0cf6
00:47:37 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.5-SNAPSHOT 5 March 2026 286abebe9e592f26ec9ce318b572cc35668b0cf6
00:47:37 Jar: lib/server/ome-poi.jar OME POI 5.3.11-SNAPSHOT 5 March 2026 286abebe9e592f26ec9ce318b572cc35668b0cf6
00:47:37 Jar: lib/server/ome-xml.jar OME XML library 6.5.4-SNAPSHOT 5 March 2026 286abebe9e592f26ec9ce318b572cc35668b0cf6
00:47:38 Jar: lib/server/omero-blitz.jar jar 5.8.5-SNAPSHOT
00:47:38 Jar: lib/server/omero-common.jar jar 5.7.5-SNAPSHOT
00:47:38 Jar: lib/server/omero-gateway.jar jar 5.10.6-SNAPSHOT
00:47:38 Jar: lib/server/omero-model.jar jar 5.7.5-SNAPSHOT
00:47:38 Jar: lib/server/omero-renderer.jar jar 5.6.5-SNAPSHOT
00:47:38 Jar: lib/server/omero-romio.jar jar 5.8.5-SNAPSHOT
00:47:38 Jar: lib/server/omero-server.jar jar 5.7.5-SNAPSHOT
00:47:38 Jar: lib/server/omero-zarr-pixel-buffer-0.6.2-SNAPSHOT.jar OMERO Zarr Pixel Buffer 0.6.2-SNAPSHOT bc3dea3f3a98cf1e873cb61c9995fa68cc3c1f5d
00:47:38 + deactivate
00:47:38 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
00:47:38 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:47:38 + export PATH
00:47:38 + unset _OLD_VIRTUAL_PATH
00:47:38 + '[' -n '' ']'
00:47:38 + hash -r
00:47:38 + '[' -n '' ']'
00:47:38 + unset VIRTUAL_ENV
00:47:38 + unset VIRTUAL_ENV_PROMPT
00:47:38 + '[' '!' '' = nondestructive ']'
00:47:38 + unset -f deactivate
00:47:38 Finished: SUCCESS
