12:54:21 Started by upstream project "Trigger" build number 41
12:54:21 originally caused by:
12:54:21 Started by user devspace
12:54:21 Running as SYSTEM
12:54:22 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-test-integration
12:54:22 [OMERO-test-integration] $ /bin/bash -xe /tmp/jenkins15923894034423077136.sh
12:54:22 + rm -rf /home/omero/workspace/OMERO-test-integration/.venv3
12:54:22 + python3.11 -m venv /home/omero/workspace/OMERO-test-integration/.venv3
12:54:26 + source /home/omero/workspace/OMERO-test-integration/.venv3/bin/activate
12:54:26 ++ deactivate nondestructive
12:54:26 ++ '[' -n '' ']'
12:54:26 ++ '[' -n '' ']'
12:54:26 ++ hash -r
12:54:26 ++ '[' -n '' ']'
12:54:26 ++ unset VIRTUAL_ENV
12:54:26 ++ unset VIRTUAL_ENV_PROMPT
12:54:26 ++ '[' '!' nondestructive = nondestructive ']'
12:54:26 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-test-integration/.venv3
12:54:26 ++ export VIRTUAL_ENV
12:54:26 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:54:26 ++ PATH=/home/omero/workspace/OMERO-test-integration/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:54:26 ++ export PATH
12:54:26 ++ '[' -n '' ']'
12:54:26 ++ '[' -z '' ']'
12:54:26 ++ _OLD_VIRTUAL_PS1=
12:54:26 ++ PS1='(.venv3) '
12:54:26 ++ export PS1
12:54:26 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
12:54:26 ++ export VIRTUAL_ENV_PROMPT
12:54:26 ++ hash -r
12:54:26 + pip install -U pip setuptools
12:54:26 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
12:54:26 Collecting pip
12:54:26 Using cached pip-25.3-py3-none-any.whl (1.8 MB)
12:54:26 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (65.5.1)
12:54:26 Collecting setuptools
12:54:26 Using cached setuptools-80.9.0-py3-none-any.whl (1.2 MB)
12:54:26 Installing collected packages: setuptools, pip
12:54:26 Attempting uninstall: setuptools
12:54:26 Found existing installation: setuptools 65.5.1
12:54:27 Uninstalling setuptools-65.5.1:
12:54:27 Successfully uninstalled setuptools-65.5.1
12:54:27 Attempting uninstall: pip
12:54:27 Found existing installation: pip 22.3.1
12:54:27 Uninstalling pip-22.3.1:
12:54:27 Successfully uninstalled pip-22.3.1
12:54:28 Successfully installed pip-25.3 setuptools-80.9.0
12:54:28 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
12:54:29 Collecting zeroc-ice==3.6.5
12:54:29 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
12:54:32 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 11.3 MB/s 0:00:03
12:54:32 Installing collected packages: zeroc-ice
12:54:33 Successfully installed zeroc-ice-3.6.5
12:54:33 + pip install markdown
12:54:34 Collecting markdown
12:54:34 Using cached markdown-3.10-py3-none-any.whl.metadata (5.1 kB)
12:54:34 Using cached markdown-3.10-py3-none-any.whl (107 kB)
12:54:34 Installing collected packages: markdown
12:54:34 Successfully installed markdown-3.10
12:54:34 + pip install mox3 pytest pytest-django pytest-xdist pytest-mock
12:54:34 Collecting mox3
12:54:34 Using cached mox3-1.1.0-py3-none-any.whl.metadata (3.2 kB)
12:54:34 Collecting pytest
12:54:34 Using cached pytest-9.0.2-py3-none-any.whl.metadata (7.6 kB)
12:54:35 Collecting pytest-django
12:54:35 Using cached pytest_django-4.11.1-py3-none-any.whl.metadata (8.3 kB)
12:54:35 Collecting pytest-xdist
12:54:35 Using cached pytest_xdist-3.8.0-py3-none-any.whl.metadata (3.0 kB)
12:54:35 Collecting pytest-mock
12:54:35 Using cached pytest_mock-3.15.1-py3-none-any.whl.metadata (3.9 kB)
12:54:35 Collecting pbr!=2.1.0,>=2.0.0 (from mox3)
12:54:35 Using cached pbr-7.0.3-py2.py3-none-any.whl.metadata (3.8 kB)
12:54:35 Collecting fixtures>=3.0.0 (from mox3)
12:54:35 Using cached fixtures-4.2.8-py3-none-any.whl.metadata (22 kB)
12:54:35 Collecting iniconfig>=1.0.1 (from pytest)
12:54:35 Using cached iniconfig-2.3.0-py3-none-any.whl.metadata (2.5 kB)
12:54:35 Collecting packaging>=22 (from pytest)
12:54:35 Using cached packaging-25.0-py3-none-any.whl.metadata (3.3 kB)
12:54:35 Collecting pluggy<2,>=1.5 (from pytest)
12:54:35 Using cached pluggy-1.6.0-py3-none-any.whl.metadata (4.8 kB)
12:54:35 Collecting pygments>=2.7.2 (from pytest)
12:54:35 Using cached pygments-2.19.2-py3-none-any.whl.metadata (2.5 kB)
12:54:35 Collecting execnet>=2.1 (from pytest-xdist)
12:54:35 Using cached execnet-2.1.2-py3-none-any.whl.metadata (2.9 kB)
12:54:35 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from pbr!=2.1.0,>=2.0.0->mox3) (80.9.0)
12:54:35 Using cached mox3-1.1.0-py3-none-any.whl (43 kB)
12:54:35 Using cached pytest-9.0.2-py3-none-any.whl (374 kB)
12:54:35 Using cached pluggy-1.6.0-py3-none-any.whl (20 kB)
12:54:35 Using cached pytest_django-4.11.1-py3-none-any.whl (25 kB)
12:54:35 Using cached pytest_xdist-3.8.0-py3-none-any.whl (46 kB)
12:54:35 Using cached pytest_mock-3.15.1-py3-none-any.whl (10 kB)
12:54:35 Using cached execnet-2.1.2-py3-none-any.whl (40 kB)
12:54:35 Using cached fixtures-4.2.8-py3-none-any.whl (40 kB)
12:54:35 Using cached iniconfig-2.3.0-py3-none-any.whl (7.5 kB)
12:54:35 Using cached packaging-25.0-py3-none-any.whl (66 kB)
12:54:35 Using cached pbr-7.0.3-py2.py3-none-any.whl (131 kB)
12:54:35 Using cached pygments-2.19.2-py3-none-any.whl (1.2 MB)
12:54:35 Installing collected packages: pygments, pluggy, pbr, packaging, iniconfig, fixtures, execnet, pytest, mox3, pytest-xdist, pytest-mock, pytest-django
12:54:36
12:54:36 Successfully installed execnet-2.1.2 fixtures-4.2.8 iniconfig-2.3.0 mox3-1.1.0 packaging-25.0 pbr-7.0.3 pluggy-1.6.0 pygments-2.19.2 pytest-9.0.2 pytest-django-4.11.1 pytest-mock-3.15.1 pytest-xdist-3.8.0
12:54:36 + pip install tables
12:54:37 Collecting tables
12:54:37 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB)
12:54:37 Collecting numpy>=1.20.0 (from tables)
12:54:37 Using cached numpy-2.4.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB)
12:54:38 Collecting numexpr>=2.6.2 (from tables)
12:54:38 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
12:54:38 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from tables) (25.0)
12:54:38 Collecting py-cpuinfo (from tables)
12:54:38 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
12:54:38 Collecting blosc2>=2.3.0 (from tables)
12:54:38 Using cached blosc2-3.12.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (7.1 kB)
12:54:38 Collecting typing-extensions>=4.4.0 (from tables)
12:54:38 Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB)
12:54:38 Collecting ndindex (from blosc2>=2.3.0->tables)
12:54:38 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
12:54:38 Collecting msgpack (from blosc2>=2.3.0->tables)
12:54:38 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB)
12:54:38 Collecting platformdirs (from blosc2>=2.3.0->tables)
12:54:38 Using cached platformdirs-4.5.1-py3-none-any.whl.metadata (12 kB)
12:54:39 Collecting requests (from blosc2>=2.3.0->tables)
12:54:39 Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB)
12:54:39 Collecting charset_normalizer<4,>=2 (from requests->blosc2>=2.3.0->tables)
12:54:39 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (37 kB)
12:54:39 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables)
12:54:39 Using cached idna-3.11-py3-none-any.whl.metadata (8.4 kB)
12:54:39 Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables)
12:54:39 Using cached urllib3-2.6.3-py3-none-any.whl.metadata (6.9 kB)
12:54:39 Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables)
12:54:39 Using cached certifi-2026.1.4-py3-none-any.whl.metadata (2.5 kB)
12:54:39 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
12:54:39 Using cached blosc2-3.12.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (4.5 MB)
12:54:39 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB)
12:54:39 Using cached numpy-2.4.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.7 MB)
12:54:40 Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB)
12:54:40 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (426 kB)
12:54:40 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
12:54:40 Using cached platformdirs-4.5.1-py3-none-any.whl (18 kB)
12:54:40 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
12:54:40 Using cached requests-2.32.5-py3-none-any.whl (64 kB)
12:54:40 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB)
12:54:40 Using cached idna-3.11-py3-none-any.whl (71 kB)
12:54:40 Using cached urllib3-2.6.3-py3-none-any.whl (131 kB)
12:54:40 Using cached certifi-2026.1.4-py3-none-any.whl (152 kB)
12:54:40 Installing collected packages: py-cpuinfo, urllib3, typing-extensions, platformdirs, numpy, ndindex, msgpack, idna, charset_normalizer, certifi, requests, numexpr, blosc2, tables
12:54:43
12:54:43 Successfully installed blosc2-3.12.2 certifi-2026.1.4 charset_normalizer-3.4.4 idna-3.11 msgpack-1.1.2 ndindex-1.10.1 numexpr-2.14.1 numpy-2.4.1 platformdirs-4.5.1 py-cpuinfo-9.0.0 requests-2.32.5 tables-3.10.2 typing-extensions-4.15.0 urllib3-2.6.3
12:54:43 + pip install jinja2
12:54:44 Collecting jinja2
12:54:44 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
12:54:44 Collecting MarkupSafe>=2.0 (from jinja2)
12:54:44 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
12:54:44 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
12:54:44 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
12:54:44 Installing collected packages: MarkupSafe, jinja2
12:54:44
12:54:44 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
12:54:44 + pip install PyYAML
12:54:44 Collecting PyYAML
12:54:44 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
12:54:44 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
12:54:45 Installing collected packages: PyYAML
12:54:45 Successfully installed PyYAML-6.0.3
12:54:45 + pip install omero-py omero-web
12:54:45 Collecting omero-py
12:54:45 Using cached omero_py-5.21.3-py3-none-any.whl.metadata (6.5 kB)
12:54:45 Collecting omero-web
12:54:45 Using cached omero_web-5.30.1-py3-none-any.whl.metadata (8.2 kB)
12:54:45 Collecting appdirs (from omero-py)
12:54:45 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
12:54:45 Collecting future (from omero-py)
12:54:45 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
12:54:45 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.1)
12:54:46 Collecting Pillow>=10.0.0 (from omero-py)
12:54:46 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.8 kB)
12:54:46 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py) (6.0.3)
12:54:46 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
12:54:46 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.32.5)
12:54:46 Collecting portalocker (from omero-py)
12:54:46 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB)
12:54:46 Collecting concurrent-log-handler>=0.9.20 (from omero-web)
12:54:46 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl.metadata (23 kB)
12:54:46 Collecting Django<5.3,>=4.2.25 (from omero-web)
12:54:46 Using cached django-5.2.10-py3-none-any.whl.metadata (4.1 kB)
12:54:46 Collecting django-pipeline (from omero-web)
12:54:46 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
12:54:46 Collecting django-cors-headers==3.7.0 (from omero-web)
12:54:46 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
12:54:46 Collecting whitenoise>=5.3.0 (from omero-web)
12:54:46 Using cached whitenoise-6.11.0-py3-none-any.whl.metadata (3.7 kB)
12:54:46 Collecting gunicorn>=19.3 (from omero-web)
12:54:46 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB)
12:54:46 Collecting omero-marshal>=0.7.0 (from omero-web)
12:54:46 Using cached omero_marshal-0.9.1-py3-none-any.whl.metadata (2.4 kB)
12:54:46 Collecting pytz (from omero-web)
12:54:46 Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB)
12:54:46 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web) (25.0)
12:54:46 Collecting importlib-resources (from omero-web)
12:54:47 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
12:54:47 Collecting asgiref>=3.8.1 (from Django<5.3,>=4.2.25->omero-web)
12:54:47 Using cached asgiref-3.11.0-py3-none-any.whl.metadata (9.3 kB)
12:54:47 Collecting sqlparse>=0.3.1 (from Django<5.3,>=4.2.25->omero-web)
12:54:47 Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB)
12:54:47 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web) (80.9.0)
12:54:47 Collecting wheel (from django-pipeline->omero-web)
12:54:47 Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB)
12:54:47 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.4)
12:54:47 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.11)
12:54:47 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2.6.3)
12:54:47 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.1.4)
12:54:47 Using cached omero_py-5.21.3-py3-none-any.whl (2.8 MB)
12:54:47 Using cached omero_web-5.30.1-py3-none-any.whl (2.8 MB)
12:54:47 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
12:54:47 Using cached django-5.2.10-py3-none-any.whl (8.3 MB)
12:54:47 Using cached asgiref-3.11.0-py3-none-any.whl (24 kB)
12:54:47 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl (28 kB)
12:54:47 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB)
12:54:47 Using cached omero_marshal-0.9.1-py3-none-any.whl (88 kB)
12:54:47 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB)
12:54:47 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB)
12:54:48 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB)
12:54:48 Using cached whitenoise-6.11.0-py3-none-any.whl (20 kB)
12:54:48 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
12:54:48 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
12:54:48 Using cached future-1.0.0-py3-none-any.whl (491 kB)
12:54:48 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
12:54:48 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB)
12:54:48 Using cached wheel-0.45.1-py3-none-any.whl (72 kB)
12:54:48 Installing collected packages: pytz, appdirs, whitenoise, wheel, sqlparse, portalocker, Pillow, omero-marshal, importlib-resources, gunicorn, future, asgiref, omero-py, django-pipeline, Django, concurrent-log-handler, django-cors-headers, omero-web
12:54:53
12:54:53 Successfully installed Django-5.2.10 Pillow-12.1.0 appdirs-1.4.4 asgiref-3.11.0 concurrent-log-handler-0.9.28 django-cors-headers-3.7.0 django-pipeline-4.1.0 future-1.0.0 gunicorn-23.0.0 importlib-resources-6.5.2 omero-marshal-0.9.1 omero-py-5.21.3 omero-web-5.30.1 portalocker-3.2.0 pytz-2025.2 sqlparse-0.5.5 wheel-0.45.1 whitenoise-6.11.0
12:54:53 [OMERO-test-integration] $ /bin/bash -xe /tmp/jenkins15041215567454964377.sh
12:54:53 + source /home/settings.env
12:54:53 ++ OMERO_DB_HOST=pg
12:54:53 ++ OMERO_DB_USER=postgres
12:54:53 ++ OMERO_DB_PASS=
12:54:53 ++ OMERO_ROOT_PASS=omero
12:54:53 ++ OMERO_DATA_DIR=/OMERO
12:54:53 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
12:54:53 + OMERO_DB_NAME=OMERO-test-integration
12:54:53 + SRC=/home/omero/workspace/OMERO-test-integration/src
12:54:53 + OMERO_DIST=/home/omero/workspace/OMERO-test-integration/src/dist
12:54:53 + export OMERODIR=/home/omero/workspace/OMERO-test-integration/src/dist
12:54:53 + OMERODIR=/home/omero/workspace/OMERO-test-integration/src/dist
12:54:53 + '[' -e /home/omero/workspace/OMERO-test-integration/src/dist ']'
12:54:53 + source /home/omero/workspace/OMERO-test-integration/.venv3/bin/activate
12:54:53 ++ deactivate nondestructive
12:54:53 ++ '[' -n '' ']'
12:54:53 ++ '[' -n '' ']'
12:54:53 ++ hash -r
12:54:53 ++ '[' -n '' ']'
12:54:53 ++ unset VIRTUAL_ENV
12:54:53 ++ unset VIRTUAL_ENV_PROMPT
12:54:53 ++ '[' '!' nondestructive = nondestructive ']'
12:54:53 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-test-integration/.venv3
12:54:53 ++ export VIRTUAL_ENV
12:54:53 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:54:53 ++ PATH=/home/omero/workspace/OMERO-test-integration/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:54:53 ++ export PATH
12:54:53 ++ '[' -n '' ']'
12:54:53 ++ '[' -z '' ']'
12:54:53 ++ _OLD_VIRTUAL_PS1=
12:54:53 ++ PS1='(.venv3) '
12:54:53 ++ export PS1
12:54:53 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
12:54:53 ++ export VIRTUAL_ENV_PROMPT
12:54:53 ++ hash -r
12:54:53 + omero admin stop
12:54:57 Server not running
12:54:57 + echo not running
12:54:57 not running
12:54:57 + deactivate
12:54:57 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
12:54:57 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:54:57 + export PATH
12:54:57 + unset _OLD_VIRTUAL_PATH
12:54:57 + '[' -n '' ']'
12:54:57 + hash -r
12:54:57 + '[' -n '' ']'
12:54:57 + unset VIRTUAL_ENV
12:54:57 + unset VIRTUAL_ENV_PROMPT
12:54:57 + '[' '!' '' = nondestructive ']'
12:54:57 + unset -f deactivate
12:54:57 + sleep 5
12:55:02 + dropdb -f -h pg -U postgres OMERO-test-integration
12:55:03 + rm -rf /home/omero/workspace/OMERO-test-integration/config /home/omero/workspace/OMERO-test-integration/data /home/omero/workspace/OMERO-test-integration/omero-blitz-5.8.4-SNAPSHOT-python.zip /home/omero/workspace/OMERO-test-integration/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-test-integration/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-test-integration/omero_py-5.22.0.dev0.tar.gz /home/omero/workspace/OMERO-test-integration/omero_scripts-5.9.2.dev0.tar.gz /home/omero/workspace/OMERO-test-integration/omero_web-5.30.2.dev0.tar.gz /home/omero/workspace/OMERO-test-integration/src /home/omero/workspace/OMERO-test-integration/version.properties
12:55:04 Copied 1 artifact from "OMERO-build" build number 18
12:55:04 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 18
12:55:04 Copied 2 artifacts from "OMERO-build-build" build number 22
12:55:04 [OMERO-test-integration] $ /bin/bash -xe /tmp/jenkins4982665910279332012.sh
12:55:04 + source /home/settings.env
12:55:04 ++ OMERO_DB_HOST=pg
12:55:04 ++ OMERO_DB_USER=postgres
12:55:04 ++ OMERO_DB_PASS=
12:55:04 ++ OMERO_ROOT_PASS=omero
12:55:04 ++ OMERO_DATA_DIR=/OMERO
12:55:04 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
12:55:04 + export ZIP_FILE=/home/omero/workspace/OMERO-test-integration/omero-blitz-VERSION-python.zip
12:55:04 + ZIP_FILE=/home/omero/workspace/OMERO-test-integration/omero-blitz-VERSION-python.zip
12:55:04 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-test-integration/version.properties
12:55:04 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-test-integration/version.properties
12:55:04 + OMERO_DB_NAME=OMERO-test-integration
12:55:04 + OMERO_DATA_DIR=/home/omero/workspace/OMERO-test-integration/data
12:55:04 + mkdir -p /home/omero/workspace/OMERO-test-integration/data
12:55:04 + SRC=/home/omero/workspace/OMERO-test-integration/src
12:55:04 ++ ls openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18.zip
12:55:04 + ZIP_SRC=openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18.zip
12:55:04 + unzip openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18.zip
12:55:04 Archive: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18.zip
12:55:04 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/
12:55:04 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/.classpath-template
12:55:04 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/.github/
12:55:04 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/.github/Pull_Request_Template.md
12:55:04 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/.github/workflows/
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12:55:04 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/components/tests/
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12:55:04 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/components/tests/ui/resources/web/
12:55:04 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/components/tests/ui/resources/web/annotation.txt
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12:55:04 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/components/tests/ui/robot_setup.sh
12:55:04 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/components/tests/ui/testcases/
12:55:04 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/components/tests/ui/testcases/web/
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12:55:04 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/components/tests/ui/testcases/web/webadmin_user_settings.robot
12:55:04 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/components/tools/
12:55:04 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/components/tools/OmeroCpp/
12:55:04 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/components/tools/OmeroCpp/CMakeLists.txt
12:55:04 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/components/tools/OmeroCpp/cmake/
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12:55:04 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/components/tools/OmeroCpp/ext/
12:55:04 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/components/tools/OmeroCpp/ext/gtest-1.7.0/
12:55:04 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/components/tools/OmeroCpp/ext/gtest-1.7.0/CHANGES
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12:55:04 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/components/tools/OmeroCpp/ext/gtest-1.7.0/cmake/
12:55:04 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/components/tools/OmeroCpp/ext/gtest-1.7.0/cmake/internal_utils.cmake
12:55:04 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/components/tools/OmeroCpp/ext/gtest-1.7.0/include/
12:55:04 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/
12:55:04 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-death-test.h
12:55:04 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-message.h
12:55:04 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-param-test.h
12:55:04 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-param-test.h.pump
12:55:04 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-printers.h
12:55:04 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-spi.h
12:55:04 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-test-part.h
12:55:04 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-typed-test.h
12:55:04 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest.h
12:55:04 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest_pred_impl.h
12:55:04 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest_prod.h
12:55:04 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/
12:55:04 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-death-test-internal.h
12:55:04 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-filepath.h
12:55:04 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-internal.h
12:55:04 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-linked_ptr.h
12:55:04 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-param-util-generated.h
12:55:04 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-param-util-generated.h.pump
12:55:04 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-param-util.h
12:55:04 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-port.h
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12:55:04 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/components/tools/OmeroCpp/ext/gtest-1.7.0/test/
12:55:04 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-death-test_ex_test.cc
12:55:04 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-death-test_test.cc
12:55:04 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-filepath_test.cc
12:55:04 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-linked_ptr_test.cc
12:55:04 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-listener_test.cc
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12:55:04 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/components/tools/OmeroPy/examples/createSession.py
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12:55:04 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/components/tools/OmeroPy/test/
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12:55:04 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/components/tools/OmeroPy/test/integration/clitest/
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12:55:05 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/luts/
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12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/luts/glasbey_inverted.lut
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12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/luts/janelia/pup_br.lut
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12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/luts/matplotlib/inferno.lut
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12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/luts/matplotlib/viridis.lut
12:55:05 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/luts/ncsa_paledit/
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/luts/ncsa_paledit/16_colors.lut
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12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/luts/ncsa_paledit/brgbcmyw.lut
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12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/luts/ncsa_paledit/sepia.lut
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/luts/ncsa_paledit/smart.lut
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/luts/ncsa_paledit/thal.lut
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12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/luts/ncsa_paledit/unionjack.lut
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/luts/physics.lut
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/luts/red-green.lut
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12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/luts/seaborn/mako.lut
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/luts/seaborn/rocket.lut
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/luts/spectrum.lut
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/luts/thermal.lut
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/luts/turbo.lut
12:55:05 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/luts/wcif/
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/luts/wcif/cyan_hot.lut
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/luts/wcif/green_fire_blue.lut
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/luts/wcif/hilo.lut
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12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/luts/wcif/magenta_hot.lut
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/luts/wcif/orange_hot.lut
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/luts/wcif/rainbow_rgb.lut
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/luts/wcif/red_hot.lut
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/luts/wcif/yellow_hot.lut
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/omero.class
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/setup.cfg
12:55:05 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/README.txt
12:55:05 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/misc/
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/misc/Makefile
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/misc/current.sql
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/misc/enums.py
12:55:05 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/
12:55:05 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO3A__1/
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO3A__1/OMERO3__7.sql
12:55:05 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO3A__10/
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO3A__10/OMERO3A__9.sql
12:55:05 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO3A__11/
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO3A__11/OMERO3A__10.sql
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO3A__11/OMERO3A__5.sql
12:55:05 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO3A__2/
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO3A__2/OMERO3A__1.sql
12:55:05 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO3A__3/
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO3A__3/OMERO3A__2.sql
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO3A__3/OMERO3__5.sql
12:55:05 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO3A__4/
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO3A__4/OMERO3A__3.sql
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO3A__4/OMERO3__5.sql
12:55:05 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO3A__5/
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO3A__5/OMERO3A__4.sql
12:55:05 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO3A__6/
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO3A__6/OMERO3A__5.sql
12:55:05 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO3A__7/
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO3A__7/OMERO3A__6.sql
12:55:05 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO3A__8/
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO3A__8/OMERO3A__6.sql
12:55:05 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO3A__9/
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO3A__9/OMERO3A__8.sql
12:55:05 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO3__4/
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO3__4/OMERO3__1.sql
12:55:05 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO3__5/
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO3__5/OMERO3__4.sql
12:55:05 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO3__6/
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO3__6/OMERO3__5.sql
12:55:05 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO3__7/
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO3__7/OMERO3__6.sql
12:55:05 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO4.1__0/
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO4.1__0/OMERO4__0.sql
12:55:05 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO4.2__0/
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
12:55:05 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO4.2__0/t/
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
12:55:05 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO4.3__0/
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
12:55:05 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO4.4__0/
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
12:55:05 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO4__0/
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO4__0/OMERO3A__11.sql
12:55:05 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.0__0/
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
12:55:05 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.1__1/
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
12:55:05 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.2__0/
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
12:55:05 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.3__0/
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
12:55:05 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.4DEV__1/
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
12:55:05 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.4DEV__2/
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
12:55:05 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.4DEV__3/
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
12:55:05 creating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.4__0/
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.4__0/psql-footer.sql
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.4__0/psql-header.sql
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.4__0/schema.sql
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/sql/psql/OMERO5.4__0/views.sql
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/test.xml
12:55:05 inflating: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/update_dependencies.sh
12:55:05 extracting: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/components/antlib/resources/gitversion.xml
12:55:05 extracting: openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18/components/tools/OmeroCpp/cmake/GitVersion.cmake
12:55:05 + rm -f openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18.zip
12:55:05 + mv /home/omero/workspace/OMERO-test-integration/openmicroscopy-5.6.3-578-c0aeca986d-ice36-b18 /home/omero/workspace/OMERO-test-integration/src
12:55:05 + source /home/omero/workspace/OMERO-test-integration/.venv3/bin/activate
12:55:05 ++ deactivate nondestructive
12:55:05 ++ '[' -n '' ']'
12:55:05 ++ '[' -n '' ']'
12:55:05 ++ hash -r
12:55:05 ++ '[' -n '' ']'
12:55:05 ++ unset VIRTUAL_ENV
12:55:05 ++ unset VIRTUAL_ENV_PROMPT
12:55:05 ++ '[' '!' nondestructive = nondestructive ']'
12:55:05 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-test-integration/.venv3
12:55:05 ++ export VIRTUAL_ENV
12:55:05 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:55:05 ++ PATH=/home/omero/workspace/OMERO-test-integration/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
12:55:05 ++ export PATH
12:55:05 ++ '[' -n '' ']'
12:55:05 ++ '[' -z '' ']'
12:55:05 ++ _OLD_VIRTUAL_PS1=
12:55:05 ++ PS1='(.venv3) '
12:55:05 ++ export PS1
12:55:05 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
12:55:05 ++ export VIRTUAL_ENV_PROMPT
12:55:05 ++ hash -r
12:55:05 + for x in *.tar.gz
12:55:05 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
12:55:05 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
12:55:05 Installing build dependencies: started
12:55:06 Installing build dependencies: finished with status 'done'
12:55:06 Getting requirements to build wheel: started
12:55:06 Getting requirements to build wheel: finished with status 'done'
12:55:06 Preparing metadata (pyproject.toml): started
12:55:07 Preparing metadata (pyproject.toml): finished with status 'done'
12:55:07 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.21.3)
12:55:07 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
12:55:07 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
12:55:07 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.1)
12:55:07 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.1.0)
12:55:07 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3)
12:55:07 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
12:55:07 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.5)
12:55:07 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0)
12:55:07 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.4)
12:55:07 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.11)
12:55:07 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.6.3)
12:55:07 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.1.4)
12:55:07 Building wheels for collected packages: omero-dropbox
12:55:07 Building wheel for omero-dropbox (pyproject.toml): started
12:55:07 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
12:55:07 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49138 sha256=433bd6a9106ab719b5c3eb6047ba61c39460d0c2d1d95a1bcec4925f9236cc25
12:55:07 Stored in directory: /home/omero/.cache/pip/wheels/fc/7e/62/5e5d34b5de7cc5d8ff95a6620b111f491c603301cfe622e998
12:55:07 Successfully built omero-dropbox
12:55:07 Installing collected packages: omero-dropbox
12:55:07 Successfully installed omero-dropbox-5.7.1.dev0
12:55:07 + for x in *.tar.gz
12:55:07 + pip install -U omero_marshal-0.9.2.dev0.tar.gz
12:55:07 Processing ./omero_marshal-0.9.2.dev0.tar.gz
12:55:07 Installing build dependencies: started
12:55:08 Installing build dependencies: finished with status 'done'
12:55:08 Getting requirements to build wheel: started
12:55:09 Getting requirements to build wheel: finished with status 'done'
12:55:09 Preparing metadata (pyproject.toml): started
12:55:09 Preparing metadata (pyproject.toml): finished with status 'done'
12:55:09 Building wheels for collected packages: omero_marshal
12:55:09 Building wheel for omero_marshal (pyproject.toml): started
12:55:09 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
12:55:09 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88132 sha256=b7bf876dfb8baf487c31d26400a0869f633dc4e595f62b65c4cf1278de162044
12:55:09 Stored in directory: /home/omero/.cache/pip/wheels/19/bc/99/c23dd653c71b3f05e4c008a12495c8f3b095cce849431c54e1
12:55:09 Successfully built omero_marshal
12:55:09 Installing collected packages: omero_marshal
12:55:09 Attempting uninstall: omero_marshal
12:55:09 Found existing installation: omero_marshal 0.9.1
12:55:09 Uninstalling omero_marshal-0.9.1:
12:55:09 Successfully uninstalled omero_marshal-0.9.1
12:55:09 Successfully installed omero_marshal-0.9.2.dev0
12:55:09 + for x in *.tar.gz
12:55:09 + pip install -U omero_py-5.22.0.dev0.tar.gz
12:55:10 Processing ./omero_py-5.22.0.dev0.tar.gz
12:55:10 Installing build dependencies: started
12:55:11 Installing build dependencies: finished with status 'done'
12:55:11 Getting requirements to build wheel: started
12:55:11 Getting requirements to build wheel: finished with status 'done'
12:55:11 Preparing metadata (pyproject.toml): started
12:55:11 Preparing metadata (pyproject.toml): finished with status 'done'
12:55:11 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.4.4)
12:55:11 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.0.0)
12:55:11 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.4.1)
12:55:11 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (12.1.0)
12:55:11 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (6.0.3)
12:55:11 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.6.5)
12:55:11 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.32.5)
12:55:11 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.2.0)
12:55:11 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.4.4)
12:55:11 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.11)
12:55:11 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2.6.3)
12:55:11 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2026.1.4)
12:55:11 Building wheels for collected packages: omero-py
12:55:11 Building wheel for omero-py (pyproject.toml): started
12:55:12 Building wheel for omero-py (pyproject.toml): finished with status 'done'
12:55:12 Created wheel for omero-py: filename=omero_py-5.22.0.dev0-py3-none-any.whl size=2785928 sha256=054e4b7ed653adbed1098062c246abc14244d4b26e23481e0b043bf4f0a06b9c
12:55:12 Stored in directory: /home/omero/.cache/pip/wheels/9e/05/9b/8e8bd103e965dc55f7156458690d079677bf95848965ee2e52
12:55:12 Successfully built omero-py
12:55:12 Installing collected packages: omero-py
12:55:12 Attempting uninstall: omero-py
12:55:12 Found existing installation: omero-py 5.21.3
12:55:12 Uninstalling omero-py-5.21.3:
12:55:13 Successfully uninstalled omero-py-5.21.3
12:55:15 Successfully installed omero-py-5.22.0.dev0
12:55:15 + for x in *.tar.gz
12:55:15 + pip install -U omero_scripts-5.9.2.dev0.tar.gz
12:55:15 Processing ./omero_scripts-5.9.2.dev0.tar.gz
12:55:15 Installing build dependencies: started
12:55:16 Installing build dependencies: finished with status 'done'
12:55:16 Getting requirements to build wheel: started
12:55:16 Getting requirements to build wheel: finished with status 'done'
12:55:16 Preparing metadata (pyproject.toml): started
12:55:16 Preparing metadata (pyproject.toml): finished with status 'done'
12:55:16 Building wheels for collected packages: omero-scripts
12:55:16 Building wheel for omero-scripts (pyproject.toml): started
12:55:17 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
12:55:17 Created wheel for omero-scripts: filename=omero_scripts-5.9.2.dev0-py3-none-any.whl size=136991 sha256=b20bbb497e47d6b520398378b44b6cfbd693d28fa4b0e27d1cba8357a2dee9c9
12:55:17 Stored in directory: /home/omero/.cache/pip/wheels/4c/39/ec/1d35a9b903bbfa62e645ce3b85c00080824fa78bacce0f38d4
12:55:17 Successfully built omero-scripts
12:55:17 Installing collected packages: omero-scripts
12:55:17 Successfully installed omero-scripts-5.9.2.dev0
12:55:17 + for x in *.tar.gz
12:55:17 + pip install -U omero_web-5.30.2.dev0.tar.gz
12:55:17 Processing ./omero_web-5.30.2.dev0.tar.gz
12:55:18 Installing build dependencies: started
12:55:20 Installing build dependencies: finished with status 'done'
12:55:20 Getting requirements to build wheel: started
12:55:21 Getting requirements to build wheel: finished with status 'done'
12:55:21 Preparing metadata (pyproject.toml): started
12:55:21 Preparing metadata (pyproject.toml): finished with status 'done'
12:55:21 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (5.22.0.dev0)
12:55:21 Requirement already satisfied: concurrent-log-handler>=0.9.20 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (0.9.28)
12:55:21 Requirement already satisfied: Django<5.3,>=5.2.9 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (5.2.10)
12:55:21 Requirement already satisfied: django-pipeline in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (4.1.0)
12:55:21 Requirement already satisfied: django-cors-headers==3.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (3.7.0)
12:55:21 Requirement already satisfied: whitenoise>=5.3.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (6.11.0)
12:55:21 Requirement already satisfied: gunicorn>=19.3 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (23.0.0)
12:55:21 Requirement already satisfied: omero-marshal>=0.9.1 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (0.9.2.dev0)
12:55:21 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (12.1.0)
12:55:21 Requirement already satisfied: pytz in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (2025.2)
12:55:21 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (3.2.0)
12:55:21 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (25.0)
12:55:21 Requirement already satisfied: importlib-resources in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (6.5.2)
12:55:21 Requirement already satisfied: asgiref>=3.8.1 in ./.venv3/lib64/python3.11/site-packages (from Django<5.3,>=5.2.9->omero-web==5.30.2.dev0) (3.11.0)
12:55:21 Requirement already satisfied: sqlparse>=0.3.1 in ./.venv3/lib64/python3.11/site-packages (from Django<5.3,>=5.2.9->omero-web==5.30.2.dev0) (0.5.5)
12:55:21 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (1.4.4)
12:55:21 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (1.0.0)
12:55:21 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.4.1)
12:55:21 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (6.0.3)
12:55:21 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.6.5)
12:55:21 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.32.5)
12:55:21 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web==5.30.2.dev0) (80.9.0)
12:55:21 Requirement already satisfied: wheel in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web==5.30.2.dev0) (0.45.1)
12:55:21 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.4.4)
12:55:21 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.11)
12:55:21 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.6.3)
12:55:21 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (2026.1.4)
12:55:21 Building wheels for collected packages: omero-web
12:55:21 Building wheel for omero-web (pyproject.toml): started
12:55:22 Building wheel for omero-web (pyproject.toml): finished with status 'done'
12:55:22 Created wheel for omero-web: filename=omero_web-5.30.2.dev0-py3-none-any.whl size=2819260 sha256=7f78b825af424ea7e34bc4050661f055ab7da4b91cf1e14f9dc621165a7af4b3
12:55:22 Stored in directory: /home/omero/.cache/pip/wheels/0d/49/80/4b4b5592fd01eeb0bef6a246d6a6aeb54cccbb12fbd6a88c62
12:55:22 Successfully built omero-web
12:55:22 Installing collected packages: omero-web
12:55:22 Attempting uninstall: omero-web
12:55:22 Found existing installation: omero-web 5.30.1
12:55:22 Uninstalling omero-web-5.30.1:
12:55:22 Successfully uninstalled omero-web-5.30.1
12:55:23 Successfully installed omero-web-5.30.2.dev0
12:55:23 + pip install omero-certificates
12:55:23 Collecting omero-certificates
12:55:23 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
12:55:23 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.22.0.dev0)
12:55:23 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
12:55:23 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
12:55:23 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.1)
12:55:23 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.1.0)
12:55:23 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3)
12:55:23 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
12:55:23 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.5)
12:55:23 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0)
12:55:23 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.4)
12:55:23 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.11)
12:55:23 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.6.3)
12:55:23 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.1.4)
12:55:23 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
12:55:23 Installing collected packages: omero-certificates
12:55:23 Successfully installed omero-certificates-0.4.0
12:55:23 + for x in omero-cli-duplicate
12:55:23 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
12:55:24 Collecting omero-cli-duplicate
12:55:24 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-4azsrvt8/omero-cli-duplicate_dc5d0e5c079a4e4a9d70595a0e445a43
12:55:24 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-4azsrvt8/omero-cli-duplicate_dc5d0e5c079a4e4a9d70595a0e445a43
12:55:24 Running command git checkout -b merge_ci --track origin/merge_ci
12:55:25 Switched to a new branch 'merge_ci'
12:55:25 branch 'merge_ci' set up to track 'origin/merge_ci'.
12:55:25 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 123a74400b1c2ee285bda934bba1e0153f6c0109
12:55:25 Installing build dependencies: started
12:55:25 Installing build dependencies: finished with status 'done'
12:55:25 Getting requirements to build wheel: started
12:55:26 Getting requirements to build wheel: finished with status 'done'
12:55:26 Preparing metadata (pyproject.toml): started
12:55:26 Preparing metadata (pyproject.toml): finished with status 'done'
12:55:26 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.22.0.dev0)
12:55:26 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
12:55:26 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
12:55:26 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.1)
12:55:26 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.1.0)
12:55:26 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3)
12:55:26 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
12:55:26 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.5)
12:55:26 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0)
12:55:26 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.4)
12:55:26 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.11)
12:55:26 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.6.3)
12:55:26 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.1.4)
12:55:26 Building wheels for collected packages: omero-cli-duplicate
12:55:26 Building wheel for omero-cli-duplicate (pyproject.toml): started
12:55:26 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
12:55:26 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11541 sha256=9d732ab32b3fd26079f3fd70589af424334db153f8f39fea1c29d70bf3fc5984
12:55:26 Stored in directory: /tmp/pip-ephem-wheel-cache-zsu_3scg/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
12:55:26 Successfully built omero-cli-duplicate
12:55:26 Installing collected packages: omero-cli-duplicate
12:55:26 Successfully installed omero-cli-duplicate-0.4.1.dev0
12:55:26 + source /home/omero/workspace/OMERO-test-integration/src/docs/hudson/functions.sh
12:55:26 + /home/omero/workspace/OMERO-test-integration/src/build.py build-default test-compile
12:55:26 Buildfile: /home/omero/workspace/OMERO-test-integration/src/build.xml
12:55:27
12:55:27 check-ivy:
12:55:27 Creating /home/omero/workspace/OMERO-test-integration/src/etc/local.properties
12:55:27 Created dir: /home/omero/workspace/OMERO-test-integration/src/target
12:55:27 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
12:55:27 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
12:55:27
12:55:27 build-scons:
12:55:27 Expanding: /home/omero/workspace/OMERO-test-integration/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-test-integration/src/target/scons
12:55:27
12:55:27 build:
12:55:27 No sub-builds to iterate on
12:55:27 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb...
12:55:28 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb...
12:55:28 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroFS...
12:55:28 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava...
12:55:28
12:55:28 tools-init:
12:55:28 no-op
12:55:28
12:55:28 retrieve:
12:55:28 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
12:55:28 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
12:55:42
12:55:42 prepare:
12:55:42 Preparing: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs
12:55:42 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/.done
12:55:42 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/src
12:55:42 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources
12:55:42 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes
12:55:42 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/test-classes
12:55:42 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/reports
12:55:42 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources
12:55:42 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes
12:55:42 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources
12:55:42 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes
12:55:42 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources
12:55:42 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes
12:55:42 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources
12:55:42 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes
12:55:42
12:55:42 pre-compile:
12:55:42 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated-classes
12:55:42 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated-classes
12:55:42 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated-classes
12:55:42 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated-classes
12:55:42 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated-classes
12:55:42
12:55:42 compile:
12:55:42 no-op
12:55:42
12:55:42 package:
12:55:42 Building jar: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/omero_client.jar
12:55:42
12:55:42 install:
12:55:42 :: delivering :: omero#omero_client;working@57f60e06d356 :: 5.6.3-578-c0aeca986d-ice36-b18-ice36 :: integration :: Wed Jan 14 12:55:28 UTC 2026
12:55:42 delivering ivy file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/ivy.xml
12:55:42 :: publishing :: omero#omero_client
12:55:43 published omero_client to /home/omero/workspace/OMERO-test-integration/src/target/repository/omero/omero_client/5.6.3-578-c0aeca986d-ice36-b18-ice36/omero_client-5.6.3-578-c0aeca986d-ice36-b18-ice36.jar
12:55:43 published ivy to /home/omero/workspace/OMERO-test-integration/src/target/repository/omero/omero_client/5.6.3-578-c0aeca986d-ice36-b18-ice36/omero_client-5.6.3-578-c0aeca986d-ice36-b18-ice36.xml
12:55:43 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy...
12:55:43 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy...
12:55:43
12:55:43 retrieve:
12:55:43 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
12:55:43 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
12:55:43 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools...
12:55:43
12:55:43 dist:
12:55:43 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/target/service-classes/META-INF
12:55:43 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/target/lib/server
12:55:43 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/target/downloads/scripts
12:55:43 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/target/downloads/scripts/omero_scripts-5.9.2.dev0.tar.gz into /home/omero/workspace/OMERO-test-integration/src/components/tools/target/downloads/scripts
12:55:44 Copying 29 files to /home/omero/workspace/OMERO-test-integration/src/components/tools/target/lib/scripts
12:55:44 Copying 29 files to /home/omero/workspace/OMERO-test-integration/src/dist
12:55:44 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-test-integration/src/dist
12:55:44 Entering /home/omero/workspace/OMERO-test-integration/src/components/tests...
12:55:44 Entering /home/omero/workspace/OMERO-test-integration/src/components/tests/ui...
12:55:44
12:55:44 copy-licenses:
12:55:44 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/dist
12:55:44 Created dir: /home/omero/workspace/OMERO-test-integration/src/dist/share
12:55:44 Copying 44 files to /home/omero/workspace/OMERO-test-integration/src/dist/share
12:55:44
12:55:44 copy-history:
12:55:44 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/dist
12:55:44
12:55:44 copy-etc:
12:55:44 Copying 28 files to /home/omero/workspace/OMERO-test-integration/src/dist/etc
12:55:44 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/dist/etc/templates
12:55:44
12:55:44 copy-sql:
12:55:44 Copying 60 files to /home/omero/workspace/OMERO-test-integration/src/dist
12:55:46
12:55:46 copy-server:
12:55:46 conflict on /home/omero/workspace/OMERO-test-integration/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
12:55:46
12:55:46 copy-client:
12:55:46 Created dir: /home/omero/workspace/OMERO-test-integration/src/dist/lib/client
12:55:47 conflict on /home/omero/workspace/OMERO-test-integration/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
12:55:48
12:55:48 update-version:
12:55:48 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/dist/etc
12:55:48
12:55:48 create-workdirs:
12:55:48 Created dir: /home/omero/workspace/OMERO-test-integration/src/dist/etc/grid
12:55:48 Created dir: /home/omero/workspace/OMERO-test-integration/src/dist/var
12:55:48 Created dir: /home/omero/workspace/OMERO-test-integration/src/dist/var/tmp
12:55:48
12:55:48 copy-luts:
12:55:48 Created dir: /home/omero/workspace/OMERO-test-integration/src/dist/lib/scripts/luts
12:55:48 Copying 47 files to /home/omero/workspace/OMERO-test-integration/src/dist/lib/scripts/luts
12:55:48
12:55:48 test-compile:
12:55:48 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
12:55:48 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroFS...
12:55:48 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy...
12:55:48 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy...
12:55:48 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb...
12:55:48 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb...
12:55:48 Entering /home/omero/workspace/OMERO-test-integration/src/components/tests/ui...
12:55:48 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava...
12:55:48
12:55:48 testng-init:
12:55:48 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
12:55:48 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
12:55:51 12:55:51,017 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
12:55:51 12:55:51,020 |-INFO in ch.qos.logback.classic.util.ContextInitializer@44459661 - No custom configurators were discovered as a service.
12:55:51 12:55:51,020 |-INFO in ch.qos.logback.classic.util.ContextInitializer@44459661 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
12:55:51 12:55:51,023 |-INFO in ch.qos.logback.classic.util.ContextInitializer@44459661 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
12:55:51 12:55:51,023 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
12:55:51 12:55:51,023 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
12:55:51 12:55:51,025 |-INFO in ch.qos.logback.classic.util.ContextInitializer@44459661 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
12:55:51 12:55:51,025 |-INFO in ch.qos.logback.classic.util.ContextInitializer@44459661 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
12:55:51 12:55:51,027 |-INFO in ch.qos.logback.classic.util.ContextInitializer@44459661 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
12:55:51 12:55:51,028 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
12:55:51 12:55:51,028 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml]
12:55:51 12:55:51,029 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@bdeda0e - Resource [logback.xml] occurs multiple times on the classpath.
12:55:51 12:55:51,029 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@bdeda0e - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml]
12:55:51 12:55:51,029 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@bdeda0e - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
12:55:51 12:55:51,250 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
12:55:51 12:55:51,250 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
12:55:51 12:55:51,266 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
12:55:51 12:55:51,268 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7548d0d - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
12:55:51 12:55:51,268 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7548d0d - Please move "immediateFlush" property into the enclosing appender.
12:55:51 12:55:51,320 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7548d0d - Setting the "immediateFlush" property of the enclosing appender to true
12:55:51 12:55:51,321 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
12:55:51 12:55:51,321 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
12:55:51 12:55:51,321 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
12:55:51 12:55:51,321 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
12:55:51 12:55:51,321 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
12:55:51 12:55:51,321 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
12:55:51 12:55:51,322 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@393489c3 - End of configuration.
12:55:51 12:55:51,324 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@51aae61a - Registering current configuration as safe fallback point
12:55:51 12:55:51,324 |-INFO in ch.qos.logback.classic.util.ContextInitializer@44459661 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 297 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
12:55:51
12:55:51 lifecycle.test-compile:
12:55:51 Copying 3 files to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/test-classes
12:55:51 Compiling 85 source files to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/test-classes
12:55:51 warning: [options] bootstrap class path not set in conjunction with -source 8
12:55:52 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:55:52 import omero.grid.RawAccessRequest;
12:55:52 ^
12:55:53 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:55:53 import omero.grid.RawAccessRequest;
12:55:53 ^
12:55:53 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:55:53 import omero.grid.RawAccessRequest;
12:55:53 ^
12:55:53 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
12:55:53 import omero.model.ImportJob;
12:55:53 ^
12:55:53 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
12:55:53 import omero.model.ImportJobI;
12:55:53 ^
12:55:53 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
12:55:53 IObject link = (IObject) linkClass.newInstance();
12:55:53 ^
12:55:53 where T is a type-variable:
12:55:53 T extends Object declared in class Class
12:55:54 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
12:55:54 T copy = (T) obj.getClass().newInstance();
12:55:54 ^
12:55:54 where T is a type-variable:
12:55:54 T extends Object declared in class Class
12:55:54 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:55:54 RawAccessRequest raw = new RawAccessRequest();
12:55:54 ^
12:55:54 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:55:54 RawAccessRequest raw = new RawAccessRequest();
12:55:54 ^
12:55:54 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
12:55:54 raw.repoUuid = legacy.root().getHash().getValue();
12:55:54 ^
12:55:54 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
12:55:54 raw.command = "rm";
12:55:54 ^
12:55:54 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
12:55:54 raw.args = Arrays.asList(path);
12:55:54 ^
12:55:54 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
12:55:54 final IObject link = linkClass.newInstance();
12:55:54 ^
12:55:54 where T is a type-variable:
12:55:54 T extends Object declared in class Class
12:55:54 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
12:55:54 originalLink.setChild(annotationClass.newInstance());
12:55:54 ^
12:55:54 where T is a type-variable:
12:55:54 T extends Object declared in class Class
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
12:55:55 RoiResult r = svc.findByImage(id, new RoiOptions());
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:55:55 final RawAccessRequest request = new RawAccessRequest();
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:55:55 final RawAccessRequest request = new RawAccessRequest();
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
12:55:55 request.repoUuid = repo.root().getHash().getValue();
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
12:55:55 request.command = "exists";
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
12:55:55 request.args = Collections.singletonList(dirPath);
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:55:55 final RawAccessRequest request = new RawAccessRequest();
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
12:55:55 final RawAccessRequest request = new RawAccessRequest();
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
12:55:55 request.repoUuid = repo.root().getHash().getValue();
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
12:55:55 request.command = "exists";
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
12:55:55 request.args = Collections.singletonList(dirName);
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
12:55:55 final ImportJob importJob = new ImportJobI();
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
12:55:55 final ImportJob importJob = new ImportJobI();
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
12:55:55 importJob.setImageName(omero.rtypes.rstring(name));
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
12:55:55 importJob.setImageDescription(omero.rtypes.rstring(desc));
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
12:55:55 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
12:55:55 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
12:55:55 final String savedName = sent.getImageName().getValue().toString();
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
12:55:55 final String savedDesc = sent.getImageDescription().getValue().toString();
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
12:55:55 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
12:55:55 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
12:55:55 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
12:55:55 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
12:55:55 RoiResult r = svc.findByImage(image.getId().getValue(),
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:55:55 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:55:55 l = svc.getRoiMeasurements(image.getId().getValue(), options);
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:55:55 l = svc.getRoiMeasurements(image.getId().getValue(), options);
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:55:55 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
12:55:55 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:55:55 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
12:55:55 table = svc.getTable(f.getId().getValue());
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
12:55:55 RoiResult r = svc.findByImage(image.getId().getValue(),
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
12:55:55 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
12:55:55 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
12:55:55 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
12:55:55 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:55:55 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:55:55 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:55:55 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:55:55 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
12:55:55 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:55:55 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:55:55 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:55:55 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:55:55 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:55:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:55:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:55:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:55:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:55:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:55:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:55:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
12:55:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
12:55:55 svc.getShapeStatsRestricted(
12:55:55 ^
12:55:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
12:55:55 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
12:55:55 ^
12:55:56 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
12:55:56 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
12:55:56 ^
12:55:56 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
12:55:56 request.typesToIgnore = Collections.singletonList("TagAnnotation");
12:55:56 ^
12:55:56 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
12:55:56 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
12:55:56 ^
12:55:56 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
12:55:56 request.typesToIgnore = Collections.singletonList("Annotation");
12:55:56 ^
12:55:56 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
12:55:56 request.typesToIgnore = Collections.singletonList("Annotation");
12:55:56 ^
12:55:56 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
12:55:56 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
12:55:56 ^
12:55:56 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
12:55:56 p2.setRelatedTo(p1);
12:55:56 ^
12:55:56 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
12:55:56 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
12:55:56 ^
12:55:56 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
12:55:56 pixels1.setRelatedTo(pixels2);
12:55:56 ^
12:55:56 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
12:55:56 Pixels pixels = pixels1.getRelatedTo();
12:55:56 ^
12:55:56 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
12:55:56 Assert.assertNull(pixels1.getRelatedTo());
12:55:56 ^
12:55:56 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
12:55:56 pixels1.setRelatedTo(pixels2);
12:55:56 ^
12:55:56 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
12:55:56 Pixels pixels = pixels1.getRelatedTo();
12:55:56 ^
12:55:56 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
12:55:56 Assert.assertNull(pixels1.getRelatedTo());
12:55:56 ^
12:55:56 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:55:56 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
12:55:56 ^
12:55:56 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:55:56 l = svc.getRoiMeasurements(image.getId().getValue(), options);
12:55:56 ^
12:55:56 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:55:56 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
12:55:56 ^
12:55:56 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
12:55:56 l = svc.getRoiMeasurements(image.getId().getValue(), options);
12:55:56 ^
12:55:56 Note: Some input files use unchecked or unsafe operations.
12:55:56 Note: Recompile with -Xlint:unchecked for details.
12:55:56 88 warnings
12:55:56 Deleting: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/_omero_build_272148815.tmp
12:55:56 Building jar: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/OmeroJava-test.jar
12:55:56 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
12:55:56 :: delivering :: omero#OmeroJava-test;working@57f60e06d356 :: 5.6.3-578-c0aeca986d-ice36-b18-ice36 :: integration :: Wed Jan 14 12:55:48 UTC 2026
12:55:56 delivering ivy file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/OmeroJava-test.xml
12:55:56 :: publishing :: omero#OmeroJava-test
12:55:56 published OmeroJava-test to /home/omero/workspace/OMERO-test-integration/src/target/test-repository/OmeroJava-test-5.6.3-578-c0aeca986d-ice36-b18-ice36.jar
12:55:56 published ivy to /home/omero/workspace/OMERO-test-integration/src/target/test-repository/OmeroJava-test-5.6.3-578-c0aeca986d-ice36-b18-ice36.xml
12:55:56
12:55:56 BUILD SUCCESSFUL
12:55:56 Total time: 29 seconds
12:55:56 + OMERO_DIST=/home/omero/workspace/OMERO-test-integration/src/dist
12:55:56 + export OMERODIR=/home/omero/workspace/OMERO-test-integration/src/dist
12:55:56 + OMERODIR=/home/omero/workspace/OMERO-test-integration/src/dist
12:55:56 + omero config set omero.db.name OMERO-test-integration
12:55:57 + omero config set omero.db.host pg
12:55:58 + omero config set omero.db.user postgres
12:55:59 + omero config set omero.db.poolsize 50
12:56:00 + omero config set omero.jvmcfg.max_system_memory.blitz 64000
12:56:01 + omero config set omero.data.dir /home/omero/workspace/OMERO-test-integration/data
12:56:02 + omero config set omero.ports.prefix 1
12:56:03 + omero config set omero.web.server_list '[["testintegration",14064,"testintegration"]]'
12:56:04 + omero certificates
12:56:04 OpenSSL 3.5.1 1 Jul 2025 (Library: OpenSSL 3.5.1 1 Jul 2025)
12:56:05 certificates created: /home/omero/workspace/OMERO-test-integration/data/certs/server.key /home/omero/workspace/OMERO-test-integration/data/certs/server.pem /home/omero/workspace/OMERO-test-integration/data/certs/server.p12
12:56:05 + createdb -h pg -U postgres OMERO-test-integration
12:56:07 + omero db script -f dbsetup.sql '' '' omero
12:56:08 WARNING: Positional arguments are deprecated
12:56:08 Using OMERO5.4 for version
12:56:08 Using 0 for patch
12:56:08 Using password from commandline
12:56:09 + psql -h pg -U postgres -d OMERO-test-integration -f dbsetup.sql
12:56:09 BEGIN
12:56:09 CREATE FUNCTION
12:56:09 CREATE FUNCTION
12:56:09 assert_db_server_prerequisites
12:56:09 --------------------------------
12:56:09
12:56:09 (1 row)
12:56:09
12:56:09 DROP FUNCTION
12:56:09 DROP FUNCTION
12:56:09 CREATE DOMAIN
12:56:09 CREATE DOMAIN
12:56:09 CREATE DOMAIN
12:56:09 CREATE DOMAIN
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12:56:09 CREATE TYPE
12:56:09 CREATE TYPE
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12:56:10 psql:dbsetup.sql:2842: NOTICE: identifier "fkcontraststretchingcontext_codomainmapcontext_id_codomainmapcontext" will be truncated to "fkcontraststretchingcontext_codomainmapcontext_id_codomainmapco"
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12:56:10 psql:dbsetup.sql:5697: NOTICE: identifier "fkreverseintensitycontext_codomainmapcontext_id_codomainmapcontext" will be truncated to "fkreverseintensitycontext_codomainmapcontext_id_codomainmapcont"
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12:56:10 CREATE TABLE
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12:56:10 CREATE VIEW
12:56:10 CREATE FUNCTION
12:56:10 CREATE TRIGGER
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12:56:10 CREATE INDEX
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12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE FUNCTION
12:56:11 SET CONSTRAINTS
12:56:11 CREATE FUNCTION
12:56:11 CREATE SEQUENCE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 CREATE INDEX
12:56:11 CREATE FUNCTION
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE SEQUENCE
12:56:11 INSERT 0 1
12:56:11 CREATE FUNCTION
12:56:11 CREATE FUNCTION
12:56:11 CREATE FUNCTION
12:56:11 CREATE TABLE
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE FUNCTION
12:56:11 CREATE TRIGGER
12:56:11 CREATE FUNCTION
12:56:11 CREATE FUNCTION
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE FUNCTION
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE FUNCTION
12:56:11 CREATE FUNCTION
12:56:11 CREATE FUNCTION
12:56:11 CREATE FUNCTION
12:56:11 CREATE FUNCTION
12:56:11 CREATE FUNCTION
12:56:11 CREATE FUNCTION
12:56:11 CREATE FUNCTION
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE FUNCTION
12:56:11 CREATE TRIGGER
12:56:11 CREATE FUNCTION
12:56:11 CREATE TRIGGER
12:56:11 CREATE FUNCTION
12:56:11 CREATE TRIGGER
12:56:11 CREATE FUNCTION
12:56:11 CREATE TRIGGER
12:56:11 CREATE FUNCTION
12:56:11 CREATE TRIGGER
12:56:11 CREATE FUNCTION
12:56:11 CREATE TRIGGER
12:56:11 CREATE FUNCTION
12:56:11 CREATE TRIGGER
12:56:11 CREATE FUNCTION
12:56:11 CREATE TRIGGER
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 INSERT 0 1
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 INSERT 0 1
12:56:11 INSERT 0 1
12:56:11 INSERT 0 1
12:56:11 INSERT 0 1
12:56:11 INSERT 0 1
12:56:11 INSERT 0 1
12:56:11 INSERT 0 1
12:56:11 INSERT 0 1
12:56:11 INSERT 0 1
12:56:11 INSERT 0 1
12:56:11 INSERT 0 1
12:56:11 INSERT 0 1
12:56:11 INSERT 0 1
12:56:11 UPDATE 1
12:56:11 UPDATE 1
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 INSERT 0 1
12:56:11 INSERT 0 1
12:56:11 INSERT 0 1
12:56:11 INSERT 0 1
12:56:11 INSERT 0 1
12:56:11 INSERT 0 1
12:56:11 INSERT 0 1
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12:56:11 INSERT 0 1
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12:56:11 INSERT 0 1
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12:56:11 INSERT 0 1
12:56:11 INSERT 0 1
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12:56:11 INSERT 0 1
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12:56:11 INSERT 0 1
12:56:11 INSERT 0 1
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12:56:11 INSERT 0 1
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12:56:11 INSERT 0 1
12:56:11 INSERT 0 1
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12:56:11 INSERT 0 1
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12:56:11 INSERT 0 1
12:56:11 INSERT 0 1
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12:56:11 INSERT 0 1
12:56:11 INSERT 0 1
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12:56:11 INSERT 0 1
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12:56:11 INSERT 0 1
12:56:11 INSERT 0 1
12:56:11 INSERT 0 1
12:56:11 INSERT 0 1
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12:56:11 INSERT 0 1
12:56:11 INSERT 0 1
12:56:11 INSERT 0 1
12:56:11 INSERT 0 1
12:56:11 INSERT 0 1
12:56:11 INSERT 0 1
12:56:11 INSERT 0 1
12:56:11 INSERT 0 1
12:56:11 UPDATE 1
12:56:11 UPDATE 1
12:56:11 UPDATE 1
12:56:11 UPDATE 1
12:56:11 UPDATE 1
12:56:11 UPDATE 1
12:56:11 UPDATE 1
12:56:11 UPDATE 1
12:56:11 UPDATE 1
12:56:11 UPDATE 1
12:56:11 UPDATE 1
12:56:11 ALTER TABLE
12:56:11 CREATE FUNCTION
12:56:11 CREATE TABLE
12:56:11 INSERT 0 1
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 CREATE INDEX
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 ALTER TABLE
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE TABLE
12:56:11 INSERT 0 1
12:56:11 INSERT 0 1
12:56:11 CREATE TABLE
12:56:11 INSERT 0 1
12:56:11 CREATE FUNCTION
12:56:11 CREATE TRIGGER
12:56:11 CREATE FUNCTION
12:56:11 CREATE TRIGGER
12:56:11 CREATE FUNCTION
12:56:11 CREATE TRIGGER
12:56:11 CREATE FUNCTION
12:56:11 CREATE TRIGGER
12:56:11 CREATE FUNCTION
12:56:11 CREATE TRIGGER
12:56:11 CREATE FUNCTION
12:56:11 CREATE TRIGGER
12:56:11 CREATE FUNCTION
12:56:11 CREATE TRIGGER
12:56:11 CREATE TABLE
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE INDEX
12:56:11 CREATE FUNCTION
12:56:11 CREATE TRIGGER
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 CREATE FUNCTION
12:56:11 CREATE TRIGGER
12:56:11 CREATE FUNCTION
12:56:11 CREATE FUNCTION
12:56:11 CREATE FUNCTION
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 DROP TABLE
12:56:11 DROP TABLE
12:56:11 DROP TABLE
12:56:11 DROP TABLE
12:56:11 DROP TABLE
12:56:11 CREATE VIEW
12:56:11 CREATE VIEW
12:56:11 CREATE VIEW
12:56:11 CREATE VIEW
12:56:11 CREATE VIEW
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 ALTER TABLE
12:56:11 CREATE FUNCTION
12:56:11 CREATE TRIGGER
12:56:11 CREATE TABLE
12:56:11 CREATE INDEX
12:56:11 CREATE FUNCTION
12:56:11 CREATE FUNCTION
12:56:11 CREATE FUNCTION
12:56:11 CREATE FUNCTION
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE FUNCTION
12:56:11 CREATE FUNCTION
12:56:11 CREATE TRIGGER
12:56:11 CREATE TRIGGER
12:56:11 CREATE INDEX
12:56:11 UPDATE 1
12:56:11 COMMIT
12:56:11 + rm dbsetup.sql
12:56:11 + export OMERO_PROFILE=/home/omero/workspace/OMERO-test-integration/config
12:56:11 + OMERO_PROFILE=/home/omero/workspace/OMERO-test-integration/config
12:56:11 + mkdir -p /home/omero/workspace/OMERO-test-integration/config/blitz
12:56:11 + cp /home/omero/workspace/OMERO-test-integration/src/dist/etc/blitz/mail-senders.example /home/omero/workspace/OMERO-test-integration/src/dist/etc/blitz/mail-server.example /home/omero/workspace/OMERO-test-integration/config/blitz
12:56:11 + for f in $OMERO_PROFILE/blitz/*
12:56:11 ++ basename /home/omero/workspace/OMERO-test-integration/config/blitz/mail-senders.example .example
12:56:11 + mv /home/omero/workspace/OMERO-test-integration/config/blitz/mail-senders.example /home/omero/workspace/OMERO-test-integration/config/blitz/mail-senders.xml
12:56:11 + for f in $OMERO_PROFILE/blitz/*
12:56:11 ++ basename /home/omero/workspace/OMERO-test-integration/config/blitz/mail-server.example .example
12:56:11 + mv /home/omero/workspace/OMERO-test-integration/config/blitz/mail-server.example /home/omero/workspace/OMERO-test-integration/config/blitz/mail-server.xml
12:56:11 + omero config set omero.mail.config true
12:56:12 + omero config set omero.mail.fake true
12:56:13 + omero config set omero.mail.port 2525
12:56:14 + BUILD_ID=DONT_KILL_ME
12:56:14 + omero admin start
12:56:19 No descriptor given. Using etc/grid/default.xml
12:56:21 Creating /home/omero/workspace/OMERO-test-integration/src/dist/var/master
12:56:21 Initializing /home/omero/workspace/OMERO-test-integration/src/dist/var/log
12:56:21 Creating /home/omero/workspace/OMERO-test-integration/src/dist/var/registry
12:56:21 Waiting on startup. Use CTRL-C to exit
12:56:21 .............................
13:01:11 Failed to startup some components after 300 seconds
13:01:11 Calling "stop" on remaining components
13:01:11 Waiting on shutdown. Use CTRL-C to exit
13:01:11 ......Build step 'Execute shell' marked build as failure
13:02:11 Recording test results
13:02:12 ERROR: Step ‘Publish JUnit test result report’ failed: No test report files were found. Configuration error?
13:02:12 TestNG Reports Processing: START
13:02:12 Looking for TestNG results report in workspace using pattern: **/OmeroJava/target/reports/integration/*.xml
13:02:13 Did not find any matching files.
13:02:13 Finished: FAILURE
