11:19:34 Started by user devspace
11:19:34 Running as SYSTEM
11:19:34 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-test-integration
11:19:34 [OMERO-test-integration] $ /bin/bash -xe /tmp/jenkins14580072237168463332.sh
11:19:34 + source /home/settings.env
11:19:34 ++ OMERO_DB_HOST=pg
11:19:34 ++ OMERO_DB_USER=postgres
11:19:34 ++ OMERO_DB_PASS=
11:19:34 ++ OMERO_ROOT_PASS=omero
11:19:34 ++ OMERO_DATA_DIR=/OMERO
11:19:34 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
11:19:34 + OMERO_DB_NAME=OMERO-test-integration
11:19:34 + SRC=/home/omero/workspace/OMERO-test-integration/src
11:19:34 + OMERO_DIST=/home/omero/workspace/OMERO-test-integration/src/dist
11:19:34 + OMERO_ENV=/home/omero/workspace/OMERO-test-integration/.venv3
11:19:34 + export OMERODIR=/home/omero/workspace/OMERO-test-integration/src/dist
11:19:34 + OMERODIR=/home/omero/workspace/OMERO-test-integration/src/dist
11:19:34 + '[' -e /home/omero/workspace/OMERO-test-integration/.venv3 ']'
11:19:34 + source /home/omero/workspace/OMERO-test-integration/.venv3/bin/activate
11:19:34 ++ deactivate nondestructive
11:19:34 ++ '[' -n '' ']'
11:19:34 ++ '[' -n '' ']'
11:19:34 ++ hash -r
11:19:34 ++ '[' -n '' ']'
11:19:34 ++ unset VIRTUAL_ENV
11:19:34 ++ unset VIRTUAL_ENV_PROMPT
11:19:34 ++ '[' '!' nondestructive = nondestructive ']'
11:19:34 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-test-integration/.venv3
11:19:34 ++ export VIRTUAL_ENV
11:19:34 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
11:19:34 ++ PATH=/home/omero/workspace/OMERO-test-integration/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
11:19:34 ++ export PATH
11:19:34 ++ '[' -n '' ']'
11:19:34 ++ '[' -z '' ']'
11:19:34 ++ _OLD_VIRTUAL_PS1=
11:19:34 ++ PS1='(.venv3) '
11:19:34 ++ export PS1
11:19:34 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
11:19:34 ++ export VIRTUAL_ENV_PROMPT
11:19:34 ++ hash -r
11:19:34 + omero admin stop
11:19:39 Waiting on shutdown. Use CTRL-C to exit
11:19:39 .+ deactivate
11:19:49 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
11:19:49 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
11:19:49 + export PATH
11:19:49 + unset _OLD_VIRTUAL_PATH
11:19:49 + '[' -n '' ']'
11:19:49 + hash -r
11:19:49 + '[' -n '' ']'
11:19:49 + unset VIRTUAL_ENV
11:19:49 + unset VIRTUAL_ENV_PROMPT
11:19:49 + '[' '!' '' = nondestructive ']'
11:19:49 + unset -f deactivate
11:19:49 + sleep 5
11:19:54 + dropdb -f -h pg -U postgres OMERO-test-integration
11:20:00 + rm -rf /home/omero/workspace/OMERO-test-integration/config /home/omero/workspace/OMERO-test-integration/data /home/omero/workspace/OMERO-test-integration/omero-blitz-5.8.6-SNAPSHOT-python.zip /home/omero/workspace/OMERO-test-integration/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-test-integration/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-test-integration/omero_py-5.23.1.dev0.tar.gz /home/omero/workspace/OMERO-test-integration/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-test-integration/omero_web-5.32.1.dev0.tar.gz /home/omero/workspace/OMERO-test-integration/src /home/omero/workspace/OMERO-test-integration/version.properties
11:21:35 + python3.11 -m venv /home/omero/workspace/OMERO-test-integration/.venv3
11:21:39 + source /home/omero/workspace/OMERO-test-integration/.venv3/bin/activate
11:21:39 ++ deactivate nondestructive
11:21:39 ++ '[' -n '' ']'
11:21:39 ++ '[' -n '' ']'
11:21:39 ++ hash -r
11:21:39 ++ '[' -n '' ']'
11:21:39 ++ unset VIRTUAL_ENV
11:21:39 ++ unset VIRTUAL_ENV_PROMPT
11:21:39 ++ '[' '!' nondestructive = nondestructive ']'
11:21:39 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-test-integration/.venv3
11:21:39 ++ export VIRTUAL_ENV
11:21:39 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
11:21:39 ++ PATH=/home/omero/workspace/OMERO-test-integration/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
11:21:39 ++ export PATH
11:21:39 ++ '[' -n '' ']'
11:21:39 ++ '[' -z '' ']'
11:21:39 ++ _OLD_VIRTUAL_PS1='(.venv3) '
11:21:39 ++ PS1='(.venv3) (.venv3) '
11:21:39 ++ export PS1
11:21:39 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
11:21:39 ++ export VIRTUAL_ENV_PROMPT
11:21:39 ++ hash -r
11:21:39 + pip install -U pip setuptools
11:21:43 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (26.2.1)
11:21:43 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (83.0.0)
11:21:44 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
11:21:44 Collecting zeroc-ice==3.6.5
11:21:45 Downloading zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
11:21:48 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 13.5 MB/s 0:00:02
11:21:48 + pip install markdown
11:21:49 Requirement already satisfied: markdown in ./.venv3/lib64/python3.11/site-packages (3.10.2)
11:21:49 + pip install mox3 pytest pytest-django pytest-xdist pytest-mock
11:21:50 Requirement already satisfied: mox3 in ./.venv3/lib64/python3.11/site-packages (1.1.0)
11:21:50 Requirement already satisfied: pytest in ./.venv3/lib64/python3.11/site-packages (9.1.1)
11:21:50 Requirement already satisfied: pytest-django in ./.venv3/lib64/python3.11/site-packages (4.12.0)
11:21:50 Requirement already satisfied: pytest-xdist in ./.venv3/lib64/python3.11/site-packages (3.8.0)
11:21:50 Requirement already satisfied: pytest-mock in ./.venv3/lib64/python3.11/site-packages (3.15.1)
11:21:50 Requirement already satisfied: pbr!=2.1.0,>=2.0.0 in ./.venv3/lib64/python3.11/site-packages (from mox3) (7.0.3)
11:21:50 Requirement already satisfied: fixtures>=3.0.0 in ./.venv3/lib64/python3.11/site-packages (from mox3) (4.3.2)
11:21:50 Requirement already satisfied: iniconfig>=1.0.1 in ./.venv3/lib64/python3.11/site-packages (from pytest) (2.3.0)
11:21:50 Requirement already satisfied: packaging>=22 in ./.venv3/lib64/python3.11/site-packages (from pytest) (26.2)
11:21:50 Requirement already satisfied: pluggy<2,>=1.5 in ./.venv3/lib64/python3.11/site-packages (from pytest) (1.6.0)
11:21:50 Requirement already satisfied: pygments>=2.7.2 in ./.venv3/lib64/python3.11/site-packages (from pytest) (2.20.0)
11:21:50 Requirement already satisfied: execnet>=2.1 in ./.venv3/lib64/python3.11/site-packages (from pytest-xdist) (2.1.2)
11:21:50 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from pbr!=2.1.0,>=2.0.0->mox3) (83.0.0)
11:21:50 + pip install tables
11:21:51 Requirement already satisfied: tables in ./.venv3/lib64/python3.11/site-packages (3.11.1)
11:21:51 Requirement already satisfied: numpy>=1.20.0 in ./.venv3/lib64/python3.11/site-packages (from tables) (2.4.6)
11:21:51 Requirement already satisfied: numexpr>=2.6.2 in ./.venv3/lib64/python3.11/site-packages (from tables) (2.14.1)
11:21:51 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from tables) (26.2)
11:21:51 Requirement already satisfied: py-cpuinfo in ./.venv3/lib64/python3.11/site-packages (from tables) (9.0.0)
11:21:51 Requirement already satisfied: blosc2>=2.3.0 in ./.venv3/lib64/python3.11/site-packages (from tables) (4.7.0)
11:21:51 Requirement already satisfied: ndindex in ./.venv3/lib64/python3.11/site-packages (from blosc2>=2.3.0->tables) (1.10.1)
11:21:51 Requirement already satisfied: msgpack in ./.venv3/lib64/python3.11/site-packages (from blosc2>=2.3.0->tables) (1.2.1)
11:21:51 Requirement already satisfied: pydantic in ./.venv3/lib64/python3.11/site-packages (from blosc2>=2.3.0->tables) (2.13.4)
11:21:51 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from blosc2>=2.3.0->tables) (2.34.2)
11:21:51 Requirement already satisfied: rich in ./.venv3/lib64/python3.11/site-packages (from blosc2>=2.3.0->tables) (15.0.0)
11:21:51 Requirement already satisfied: threadpoolctl in ./.venv3/lib64/python3.11/site-packages (from blosc2>=2.3.0->tables) (3.6.0)
11:21:51 Requirement already satisfied: annotated-types>=0.6.0 in ./.venv3/lib64/python3.11/site-packages (from pydantic->blosc2>=2.3.0->tables) (0.7.0)
11:21:51 Requirement already satisfied: pydantic-core==2.46.4 in ./.venv3/lib64/python3.11/site-packages (from pydantic->blosc2>=2.3.0->tables) (2.46.4)
11:21:51 Requirement already satisfied: typing-extensions>=4.14.1 in ./.venv3/lib64/python3.11/site-packages (from pydantic->blosc2>=2.3.0->tables) (4.16.0)
11:21:51 Requirement already satisfied: typing-inspection>=0.4.2 in ./.venv3/lib64/python3.11/site-packages (from pydantic->blosc2>=2.3.0->tables) (0.4.2)
11:21:51 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.4.9)
11:21:51 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.18)
11:21:51 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (2.7.0)
11:21:51 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (2026.6.17)
11:21:51 Requirement already satisfied: markdown-it-py>=2.2.0 in ./.venv3/lib64/python3.11/site-packages (from rich->blosc2>=2.3.0->tables) (4.2.0)
11:21:51 Requirement already satisfied: pygments<3.0.0,>=2.13.0 in ./.venv3/lib64/python3.11/site-packages (from rich->blosc2>=2.3.0->tables) (2.20.0)
11:21:51 Requirement already satisfied: mdurl~=0.1 in ./.venv3/lib64/python3.11/site-packages (from markdown-it-py>=2.2.0->rich->blosc2>=2.3.0->tables) (0.1.2)
11:21:51 + pip install jinja2
11:21:52 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (3.1.6)
11:21:52 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2) (3.0.3)
11:21:52 + pip install PyYAML
11:21:53 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (6.0.3)
11:21:53 Copied 1 artifact from "OMERO-build" build number 39
11:21:54 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 32
11:21:54 Copied 2 artifacts from "OMERO-build-build" build number 44
11:21:54 [OMERO-test-integration] $ /bin/bash -xe /tmp/jenkins358909759276162288.sh
11:21:54 + source /home/settings.env
11:21:54 ++ OMERO_DB_HOST=pg
11:21:54 ++ OMERO_DB_USER=postgres
11:21:54 ++ OMERO_DB_PASS=
11:21:54 ++ OMERO_ROOT_PASS=omero
11:21:54 ++ OMERO_DATA_DIR=/OMERO
11:21:54 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
11:21:54 + export ZIP_FILE=/home/omero/workspace/OMERO-test-integration/omero-blitz-VERSION-python.zip
11:21:54 + ZIP_FILE=/home/omero/workspace/OMERO-test-integration/omero-blitz-VERSION-python.zip
11:21:54 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-test-integration/version.properties
11:21:54 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-test-integration/version.properties
11:21:54 + OMERO_DB_NAME=OMERO-test-integration
11:21:54 + OMERO_DATA_DIR=/home/omero/workspace/OMERO-test-integration/data
11:21:54 + mkdir -p /home/omero/workspace/OMERO-test-integration/data
11:21:54 + SRC=/home/omero/workspace/OMERO-test-integration/src
11:21:54 ++ ls openmicroscopy-5.6.3-642-1621d09097-ice36-b39.zip
11:21:54 + ZIP_SRC=openmicroscopy-5.6.3-642-1621d09097-ice36-b39.zip
11:21:54 + unzip openmicroscopy-5.6.3-642-1621d09097-ice36-b39.zip
11:21:54 Archive: openmicroscopy-5.6.3-642-1621d09097-ice36-b39.zip
11:21:54 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/.classpath-template
11:21:54 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/.github/
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/.github/Pull_Request_Template.md
11:21:54 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/.github/workflows/
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/.github/workflows/docker_build.yml
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/.github/workflows/release.yml
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/.github/workflows/source_build.yml
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/.github/workflows/update.yaml
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/.mailmap
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/.project
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/CMakeLists.txt
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/CONTRIBUTING.md
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/Dockerfile
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/LICENSE.txt
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/README.md
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/SUPPORT.md
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/build.bat
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/build.py
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/build.xml
11:21:54 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/
11:21:54 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/antlib/
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/antlib/.classpath
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/antlib/.project
11:21:54 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/antlib/resources/
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/antlib/resources/excludebugs.xml
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/antlib/resources/global.xml
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/antlib/resources/hibernate.xml
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/antlib/resources/lifecycle.xml
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/antlib/resources/version.xml
11:21:54 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/antlib/scripts/
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/antlib/scripts/parse_version
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/antlib/scripts/source-archive.py
11:21:54 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tests/
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tests/build.xml
11:21:54 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tests/ui/
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tests/ui/README.md
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tests/ui/build.xml
11:21:54 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tests/ui/plugins/
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tests/ui/plugins/robot.py
11:21:54 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tests/ui/resources/
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tests/ui/resources/robot.template
11:21:54 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tests/ui/resources/web/
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tests/ui/resources/web/annotation.txt
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tests/ui/resources/web/login.txt
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tests/ui/resources/web/thumbs.txt
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tests/ui/resources/web/tree.txt
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tests/ui/resources/web/webadmin.txt
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tests/ui/resources/well_sample_posXY.py
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tests/ui/robot_setup.sh
11:21:54 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tests/ui/testcases/
11:21:54 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tests/ui/testcases/web/
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tests/ui/testcases/web/annotate_test.robot
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tests/ui/testcases/web/center_right_panel_test.robot
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tests/ui/testcases/web/create_scenario.robot
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tests/ui/testcases/web/delete_test.robot
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tests/ui/testcases/web/download_options_test.robot
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tests/ui/testcases/web/filter_test.robot
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tests/ui/testcases/web/forms_test.robot
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tests/ui/testcases/web/history_test.robot
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tests/ui/testcases/web/map_annotations_test.robot
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tests/ui/testcases/web/post_copy_test.robot
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tests/ui/testcases/web/post_cut_test.robot
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tests/ui/testcases/web/post_drag_test.robot
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tests/ui/testcases/web/post_manage_test.robot
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tests/ui/testcases/web/rdef_test.robot
11:21:54 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tests/ui/testcases/web/search.robot
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11:21:55 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/
11:21:55 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/
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11:21:55 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/
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11:21:55 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/README
11:21:55 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/cmake/
11:21:55 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/cmake/internal_utils.cmake
11:21:55 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/include/
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11:21:55 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-death-test.h
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11:21:55 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-param-test.h
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11:21:55 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/
11:21:55 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-death-test-internal.h
11:21:55 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-filepath.h
11:21:55 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-internal.h
11:21:55 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-linked_ptr.h
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11:21:55 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-port.h
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11:21:55 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-type-util.h.pump
11:21:55 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/
11:21:55 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/prime_tables.h
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11:21:55 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample10_unittest.cc
11:21:55 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample1_unittest.cc
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11:21:55 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample3-inl.h
11:21:55 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample3_unittest.cc
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11:21:55 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample7_unittest.cc
11:21:55 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample8_unittest.cc
11:21:55 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample9_unittest.cc
11:21:55 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/
11:21:55 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/fuse_gtest_files.py
11:21:55 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/gen_gtest_pred_impl.py
11:21:55 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/gtest-config.in
11:21:55 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/pump.py
11:21:55 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/test/
11:21:55 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/test/Makefile
11:21:55 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/src/
11:21:55 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-all.cc
11:21:55 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-death-test.cc
11:21:55 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-filepath.cc
11:21:55 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-internal-inl.h
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11:21:55 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-printers.cc
11:21:55 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-test-part.cc
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11:21:55 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest.cc
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11:21:55 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/test/
11:21:55 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-death-test_ex_test.cc
11:21:55 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-death-test_test.cc
11:21:55 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-filepath_test.cc
11:21:55 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-linked_ptr_test.cc
11:21:55 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-listener_test.cc
11:21:55 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-message_test.cc
11:21:55 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-options_test.cc
11:21:55 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-param-test2_test.cc
11:21:55 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-param-test_test.cc
11:21:55 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-param-test_test.h
11:21:55 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-port_test.cc
11:21:55 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-printers_test.cc
11:21:56 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-test-part_test.cc
11:21:56 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-tuple_test.cc
11:21:56 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-typed-test2_test.cc
11:21:56 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-typed-test_test.cc
11:21:56 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-typed-test_test.h
11:21:56 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-unittest-api_test.cc
11:21:56 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_all_test.cc
11:21:56 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_break_on_failure_unittest.py
11:21:56 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_break_on_failure_unittest_.cc
11:21:56 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_catch_exceptions_test.py
11:21:56 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_catch_exceptions_test_.cc
11:21:56 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_color_test.py
11:21:56 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_color_test_.cc
11:21:56 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_env_var_test.py
11:21:56 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_env_var_test_.cc
11:21:56 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_environment_test.cc
11:21:56 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_filter_unittest.py
11:21:56 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_filter_unittest_.cc
11:21:56 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_help_test.py
11:21:56 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_help_test_.cc
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11:21:57 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroJava/resources/
11:21:57 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroJava/settings.gradle
11:21:57 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroJava/test.xml
11:21:57 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroJava/test/
11:21:57 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroJava/test/fs.testng.xml
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11:21:57 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroJava/test/integration/
11:21:57 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroJava/test/integration/AbstractServerImportTest.java
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11:21:58 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroJava/test/integration/MetadataServiceTest.java
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11:21:58 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java
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11:21:58 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroJava/test/integration/PixelsServiceTest.java
11:21:58 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroJava/test/integration/PojosServiceTest.java
11:21:58 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroJava/test/integration/ProjectionServiceTest.java
11:21:58 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroJava/test/integration/PyramidMinMaxTest.java
11:21:58 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroJava/test/integration/RawFileStoreTest.java
11:21:58 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroJava/test/integration/RawPixelsStoreTest.java
11:21:58 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroJava/test/integration/RenderingEngineTest.java
11:21:58 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroJava/test/integration/RenderingSettingsServicePermissionsTest.java
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11:21:58 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroJava/test/integration/RoiServiceTest.java
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11:21:58 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroJava/test/integration/UpgradeCheckTest.java
11:21:58 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroJava/test/integration/chgrp/
11:21:58 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroJava/test/integration/chgrp/AnnotationMoveTest.java
11:21:58 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveAndPermissionsTest.java
11:21:58 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveCombinedDataTest.java
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11:21:58 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveImageWithAcquisitionDataTest.java
11:21:58 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveImageWithRoiFromOtherUserTest.java
11:21:58 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveImageWithRoiTest.java
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11:21:58 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroJava/test/integration/chgrp/MultiImageFilesetMoveTest.java
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11:21:58 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroJava/test/integration/chmod/
11:21:58 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroJava/test/integration/chmod/PermissionsTest.java
11:21:58 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroJava/test/integration/chmod/RolesTest.java
11:21:58 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroJava/test/integration/chown/
11:21:58 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroJava/test/integration/chown/PermissionsTest.java
11:21:58 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroJava/test/integration/delete/
11:21:58 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroJava/test/integration/delete/AdditionalDeleteTest.java
11:21:58 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java
11:21:58 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroJava/test/integration/delete/DeleteProjectedImageTest.java
11:21:58 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java
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11:21:58 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java
11:21:58 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java
11:21:58 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroJava/test/integration/delete/SpwDeleteTest.java
11:21:58 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroJava/test/integration/gateway/
11:21:58 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroJava/test/integration/gateway/AdminFacilityTest.java
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11:21:58 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroJava/test/integration/gateway/DataManagerFacilityTest.java
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11:21:58 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroJava/test/integration/gateway/LoadFacilityTest.java
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11:21:58 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroJava/test/integration/gateway/RawDataFacilityTest.java
11:21:58 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroJava/test/integration/gateway/SearchFacilityTest.java
11:21:58 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroJava/test/integration/gateway/TablesFacilityTest.java
11:21:58 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroJava/test/integration/thumbnail/
11:21:58 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroJava/test/integration/thumbnail/BatchLoadingTest.java
11:21:58 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroJava/test/integration/thumbnail/SingleFileTest.java
11:21:58 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroJava/test/integration/thumbnail/SkipThumbnailsPermissionsTest.java
11:21:58 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroJava/test/integration/thumbnail/Utils.java
11:21:58 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroPy/
11:21:58 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroPy/bin/
11:21:58 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroPy/bin/omero
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11:21:58 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroPy/bin/setpythonpath.bat
11:21:58 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroPy/bin/winconfig.bat
11:21:59 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroPy/build.xml
11:21:59 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroPy/examples/
11:21:59 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroPy/examples/createSession.py
11:21:59 extracting: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroPy/examples/load.omero
11:21:59 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroPy/examples/projection_1.py
11:21:59 extracting: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroPy/examples/submit.omero
11:21:59 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroPy/examples/upload.omero
11:21:59 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroPy/ice.config
11:21:59 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroPy/ivy.xml
11:21:59 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroPy/manualtests/
11:21:59 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroPy/manualtests/README.txt
11:21:59 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroPy/manualtests/populate_roi_test.py
11:21:59 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroPy/setup.py
11:21:59 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroPy/test/
11:21:59 extracting: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroPy/test/__init__.py
11:21:59 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroPy/test/conftest.py
11:21:59 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroPy/test/integration/
11:21:59 extracting: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroPy/test/integration/__init__.py
11:21:59 extracting: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroPy/test/integration/client_ctors.cfg
11:21:59 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroPy/test/integration/clitest/
11:21:59 extracting: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroPy/test/integration/clitest/__init__.py
11:21:59 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroPy/test/integration/clitest/cli.py
11:21:59 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroPy/test/integration/clitest/test_admin.py
11:21:59 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroPy/test/integration/clitest/test_chgrp.py
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11:21:59 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroPy/test/integration/clitest/test_delete.py
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11:21:59 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroPy/test/integration/clitest/test_ldap.py
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11:22:06 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/lib/linux-native/
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11:22:06 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/lib/linux64-native/
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11:22:06 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/lib/logback-build.xml
11:22:06 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/lib/patches/
11:22:06 extracting: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/lib/patches/hibernate-3.5-ColumnTransformer.patch.gz
11:22:06 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/lib/repository/
11:22:06 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/lib/repository/JHotDraw-7.0.9.jar
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11:22:06 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/lib/repository/ant-1.8.0.jar
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11:22:06 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/lib/repository/findbugs-ant-1.2.1.jar
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11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/lib/repository/ivy-2.4.0.jar
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/lib/repository/omero-icemock-3.5.1.jar
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11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/lib/repository/oro-2.0.8.jar
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/lib/repository/scons-local-2.1.0.zip
11:22:07 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/3-3-2_rgb.lut
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/cividis.lut
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/fire.lut
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/glasbey.lut
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/glasbey_inverted.lut
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/glow.lut
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/grays.lut
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/ice.lut
11:22:07 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/janelia/
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/janelia/pup_br.lut
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/janelia/pup_nr.lut
11:22:07 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/matplotlib/
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/matplotlib/inferno.lut
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/matplotlib/magma.lut
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/matplotlib/plasma.lut
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/matplotlib/viridis.lut
11:22:07 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/ncsa_paledit/
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/ncsa_paledit/16_colors.lut
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/ncsa_paledit/5_ramps.lut
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/ncsa_paledit/6_shades.lut
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/ncsa_paledit/blue_orange_icb.lut
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/ncsa_paledit/brgbcmyw.lut
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/ncsa_paledit/cool.lut
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/ncsa_paledit/edges.lut
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/ncsa_paledit/gem.lut
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/ncsa_paledit/phase.lut
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/ncsa_paledit/royal.lut
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/ncsa_paledit/sepia.lut
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/ncsa_paledit/smart.lut
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/ncsa_paledit/thal.lut
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/ncsa_paledit/thallium.lut
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/ncsa_paledit/unionjack.lut
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/physics.lut
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/red-green.lut
11:22:07 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/seaborn/
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/seaborn/mako.lut
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/seaborn/rocket.lut
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/spectrum.lut
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/thermal.lut
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/turbo.lut
11:22:07 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/wcif/
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/wcif/cyan_hot.lut
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/wcif/green_fire_blue.lut
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/wcif/hilo.lut
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/wcif/ica.lut
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/wcif/ica2.lut
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/wcif/ica3.lut
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/wcif/magenta_hot.lut
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/wcif/orange_hot.lut
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/wcif/rainbow_rgb.lut
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/wcif/red_hot.lut
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/luts/wcif/yellow_hot.lut
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/omero.class
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/setup.cfg
11:22:07 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/README.txt
11:22:07 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/misc/
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/misc/Makefile
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/misc/current.sql
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/misc/enums.py
11:22:07 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/
11:22:07 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO3A__1/
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO3A__1/OMERO3__7.sql
11:22:07 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO3A__10/
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO3A__10/OMERO3A__9.sql
11:22:07 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO3A__11/
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO3A__11/OMERO3A__10.sql
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO3A__11/OMERO3A__5.sql
11:22:07 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO3A__2/
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO3A__2/OMERO3A__1.sql
11:22:07 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO3A__3/
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO3A__3/OMERO3A__2.sql
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO3A__3/OMERO3__5.sql
11:22:07 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO3A__4/
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO3A__4/OMERO3A__3.sql
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO3A__4/OMERO3__5.sql
11:22:07 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO3A__5/
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO3A__5/OMERO3A__4.sql
11:22:07 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO3A__6/
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO3A__6/OMERO3A__5.sql
11:22:07 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO3A__7/
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO3A__7/OMERO3A__6.sql
11:22:07 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO3A__8/
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO3A__8/OMERO3A__6.sql
11:22:07 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO3A__9/
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO3A__9/OMERO3A__8.sql
11:22:07 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO3__4/
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO3__4/OMERO3__1.sql
11:22:07 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO3__5/
11:22:07 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO3__5/OMERO3__4.sql
11:22:07 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO3__6/
11:22:08 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO3__6/OMERO3__5.sql
11:22:08 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO3__7/
11:22:08 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO3__7/OMERO3__6.sql
11:22:08 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO4.1__0/
11:22:08 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO4.1__0/OMERO4__0.sql
11:22:08 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO4.2__0/
11:22:08 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
11:22:08 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO4.2__0/t/
11:22:08 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
11:22:08 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
11:22:08 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO4.3__0/
11:22:08 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
11:22:08 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
11:22:08 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO4.4__0/
11:22:08 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
11:22:08 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
11:22:08 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO4__0/
11:22:08 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO4__0/OMERO3A__11.sql
11:22:08 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO5.0__0/
11:22:08 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
11:22:08 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
11:22:08 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
11:22:08 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO5.1__1/
11:22:08 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
11:22:08 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
11:22:08 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
11:22:08 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
11:22:08 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO5.2__0/
11:22:08 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
11:22:08 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
11:22:08 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
11:22:08 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO5.3__0/
11:22:08 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
11:22:08 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
11:22:08 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
11:22:08 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
11:22:08 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
11:22:08 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
11:22:08 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO5.4DEV__1/
11:22:08 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
11:22:08 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO5.4DEV__2/
11:22:08 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
11:22:08 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO5.4DEV__3/
11:22:08 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
11:22:08 creating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO5.4__0/
11:22:08 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
11:22:08 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
11:22:08 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
11:22:08 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
11:22:08 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
11:22:08 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
11:22:08 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO5.4__0/psql-footer.sql
11:22:08 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO5.4__0/psql-header.sql
11:22:08 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO5.4__0/schema.sql
11:22:08 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/sql/psql/OMERO5.4__0/views.sql
11:22:08 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/test.xml
11:22:08 inflating: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/update_dependencies.sh
11:22:08 extracting: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/antlib/resources/gitversion.xml
11:22:08 extracting: openmicroscopy-5.6.3-642-1621d09097-ice36-b39/components/tools/OmeroCpp/cmake/GitVersion.cmake
11:22:08 + rm -f openmicroscopy-5.6.3-642-1621d09097-ice36-b39.zip
11:22:08 + mv /home/omero/workspace/OMERO-test-integration/openmicroscopy-5.6.3-642-1621d09097-ice36-b39 /home/omero/workspace/OMERO-test-integration/src
11:22:08 + source /home/omero/workspace/OMERO-test-integration/.venv3/bin/activate
11:22:08 ++ deactivate nondestructive
11:22:08 ++ '[' -n '' ']'
11:22:08 ++ '[' -n '' ']'
11:22:08 ++ hash -r
11:22:08 ++ '[' -n '' ']'
11:22:08 ++ unset VIRTUAL_ENV
11:22:08 ++ unset VIRTUAL_ENV_PROMPT
11:22:08 ++ '[' '!' nondestructive = nondestructive ']'
11:22:08 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-test-integration/.venv3
11:22:08 ++ export VIRTUAL_ENV
11:22:08 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
11:22:08 ++ PATH=/home/omero/workspace/OMERO-test-integration/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
11:22:08 ++ export PATH
11:22:08 ++ '[' -n '' ']'
11:22:08 ++ '[' -z '' ']'
11:22:08 ++ _OLD_VIRTUAL_PS1=
11:22:08 ++ PS1='(.venv3) '
11:22:08 ++ export PS1
11:22:08 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
11:22:08 ++ export VIRTUAL_ENV_PROMPT
11:22:08 ++ hash -r
11:22:08 + for x in *.tar.gz
11:22:08 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
11:22:09 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
11:22:09 Installing build dependencies: started
11:22:11 Installing build dependencies: finished with status 'done'
11:22:11 Getting requirements to build wheel: started
11:22:12 Getting requirements to build wheel: finished with status 'done'
11:22:12 Preparing metadata (pyproject.toml): started
11:22:12 Preparing metadata (pyproject.toml): finished with status 'done'
11:22:12 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.23.1.dev0)
11:22:12 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
11:22:12 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
11:22:12 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.6)
11:22:12 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.3.0)
11:22:12 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3)
11:22:12 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
11:22:12 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.34.2)
11:22:12 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0)
11:22:12 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.9)
11:22:12 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.18)
11:22:12 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.7.0)
11:22:12 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.6.17)
11:22:12 Building wheels for collected packages: omero-dropbox
11:22:12 Building wheel for omero-dropbox (pyproject.toml): started
11:22:12 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
11:22:12 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49153 sha256=045cc7a575b192f14780d5d443f3786fdfc1a9774852763b3d3a181d000672ab
11:22:12 Stored in directory: /home/omero/.cache/pip/wheels/fc/7e/62/5e5d34b5de7cc5d8ff95a6620b111f491c603301cfe622e998
11:22:13 Successfully built omero-dropbox
11:22:13 Installing collected packages: omero-dropbox
11:22:13 Attempting uninstall: omero-dropbox
11:22:13 Found existing installation: omero-dropbox 5.7.1.dev0
11:22:13 Uninstalling omero-dropbox-5.7.1.dev0:
11:22:33 Successfully uninstalled omero-dropbox-5.7.1.dev0
11:22:33 Successfully installed omero-dropbox-5.7.1.dev0
11:22:33 + for x in *.tar.gz
11:22:33 + pip install -U omero_marshal-0.9.2.dev0.tar.gz
11:22:34 Processing ./omero_marshal-0.9.2.dev0.tar.gz
11:22:34 Installing build dependencies: started
11:22:35 Installing build dependencies: finished with status 'done'
11:22:35 Getting requirements to build wheel: started
11:22:36 Getting requirements to build wheel: finished with status 'done'
11:22:36 Preparing metadata (pyproject.toml): started
11:22:36 Preparing metadata (pyproject.toml): finished with status 'done'
11:22:36 Building wheels for collected packages: omero_marshal
11:22:36 Building wheel for omero_marshal (pyproject.toml): started
11:22:36 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
11:22:36 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88129 sha256=b0137e9a9d17e1e8af4fc41deecdcf2ca6d0f5482a73aca8aef1f6e6631d618f
11:22:36 Stored in directory: /home/omero/.cache/pip/wheels/19/bc/99/c23dd653c71b3f05e4c008a12495c8f3b095cce849431c54e1
11:22:36 Successfully built omero_marshal
11:22:37 Installing collected packages: omero_marshal
11:22:37 Attempting uninstall: omero_marshal
11:22:37 Found existing installation: omero_marshal 0.9.2.dev0
11:22:38 Uninstalling omero_marshal-0.9.2.dev0:
11:22:38 Successfully uninstalled omero_marshal-0.9.2.dev0
11:22:41 Successfully installed omero_marshal-0.9.2.dev0
11:22:41 + for x in *.tar.gz
11:22:41 + pip install -U omero_py-5.23.1.dev0.tar.gz
11:22:42 Processing ./omero_py-5.23.1.dev0.tar.gz
11:22:42 Installing build dependencies: started
11:22:43 Installing build dependencies: finished with status 'done'
11:22:43 Getting requirements to build wheel: started
11:22:44 Getting requirements to build wheel: finished with status 'done'
11:22:44 Preparing metadata (pyproject.toml): started
11:22:44 Preparing metadata (pyproject.toml): finished with status 'done'
11:22:44 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (1.4.4)
11:22:44 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (1.0.0)
11:22:44 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (2.4.6)
11:22:44 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (12.3.0)
11:22:44 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (6.0.3)
11:22:44 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (3.6.5)
11:22:44 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (2.34.2)
11:22:44 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (3.2.0)
11:22:44 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (3.4.9)
11:22:44 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (3.18)
11:22:44 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (2.7.0)
11:22:44 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (2026.6.17)
11:22:44 Building wheels for collected packages: omero-py
11:22:44 Building wheel for omero-py (pyproject.toml): started
11:22:45 Building wheel for omero-py (pyproject.toml): finished with status 'done'
11:22:45 Created wheel for omero-py: filename=omero_py-5.23.1.dev0-py3-none-any.whl size=2786710 sha256=01e6aa236c553b7c37fba4c232f9ec7b22310c656befaf78b83680063c8c8951
11:22:45 Stored in directory: /home/omero/.cache/pip/wheels/f0/67/d7/966241aae598ef6c609c945b3d6bb828e11ceaf0fb2f56963b
11:22:45 Successfully built omero-py
11:22:45 Installing collected packages: omero-py
11:22:45 Attempting uninstall: omero-py
11:22:45 Found existing installation: omero-py 5.23.1.dev0
11:22:46 Uninstalling omero-py-5.23.1.dev0:
11:22:54 Successfully uninstalled omero-py-5.23.1.dev0
11:23:10 Successfully installed omero-py-5.23.1.dev0
11:23:10 + for x in *.tar.gz
11:23:10 + pip install -U omero_scripts-5.10.1.dev0.tar.gz
11:23:11 Processing ./omero_scripts-5.10.1.dev0.tar.gz
11:23:11 Installing build dependencies: started
11:23:12 Installing build dependencies: finished with status 'done'
11:23:12 Getting requirements to build wheel: started
11:23:12 Getting requirements to build wheel: finished with status 'done'
11:23:12 Preparing metadata (pyproject.toml): started
11:23:13 Preparing metadata (pyproject.toml): finished with status 'done'
11:23:13 Building wheels for collected packages: omero-scripts
11:23:13 Building wheel for omero-scripts (pyproject.toml): started
11:23:13 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
11:23:13 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=137216 sha256=9764cb9b0e515df4b16f3bebe3859d1dc419cd1f48ae9d8d6853d0fef292240e
11:23:13 Stored in directory: /home/omero/.cache/pip/wheels/dc/2a/1b/114f0904de09a5b967180bea9e80ac22e3d829eefd3cfd8487
11:23:13 Successfully built omero-scripts
11:23:13 Installing collected packages: omero-scripts
11:23:13 Attempting uninstall: omero-scripts
11:23:13 Found existing installation: omero-scripts 5.10.1.dev0
11:23:14 Uninstalling omero-scripts-5.10.1.dev0:
11:23:14 Successfully uninstalled omero-scripts-5.10.1.dev0
11:23:15 Successfully installed omero-scripts-5.10.1.dev0
11:23:15 + for x in *.tar.gz
11:23:15 + pip install -U omero_web-5.32.1.dev0.tar.gz
11:23:15 Processing ./omero_web-5.32.1.dev0.tar.gz
11:23:16 Installing build dependencies: started
11:23:17 Installing build dependencies: finished with status 'done'
11:23:17 Getting requirements to build wheel: started
11:23:17 Getting requirements to build wheel: finished with status 'done'
11:23:17 Preparing metadata (pyproject.toml): started
11:23:18 Preparing metadata (pyproject.toml): finished with status 'done'
11:23:18 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (5.23.1.dev0)
11:23:18 Requirement already satisfied: concurrent-log-handler>=0.9.20 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (0.9.29)
11:23:18 Requirement already satisfied: Django<5.3,>=5.2.9 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (5.2.16)
11:23:18 Requirement already satisfied: django-pipeline>=4.1.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (4.1.0)
11:23:18 Requirement already satisfied: django-cors-headers==3.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (3.7.0)
11:23:18 Requirement already satisfied: whitenoise>=5.3.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (6.12.0)
11:23:18 Requirement already satisfied: gunicorn>=19.3 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (26.0.0)
11:23:18 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (0.9.2.dev0)
11:23:18 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (12.3.0)
11:23:18 Requirement already satisfied: pytz in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (2026.2)
11:23:18 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (3.2.0)
11:23:18 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (26.2)
11:23:18 Requirement already satisfied: importlib-resources in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (7.1.0)
11:23:18 Requirement already satisfied: asgiref>=3.8.1 in ./.venv3/lib64/python3.11/site-packages (from Django<5.3,>=5.2.9->omero-web==5.32.1.dev0) (3.11.1)
11:23:18 Requirement already satisfied: sqlparse>=0.3.1 in ./.venv3/lib64/python3.11/site-packages (from Django<5.3,>=5.2.9->omero-web==5.32.1.dev0) (0.5.5)
11:23:18 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.32.1.dev0) (83.0.0)
11:23:18 Requirement already satisfied: wheel in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.32.1.dev0) (0.47.0)
11:23:18 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (1.4.4)
11:23:18 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (1.0.0)
11:23:18 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.4.6)
11:23:18 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (6.0.3)
11:23:18 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.6.5)
11:23:18 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.34.2)
11:23:18 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.4.9)
11:23:18 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.18)
11:23:18 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.7.0)
11:23:18 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (2026.6.17)
11:23:18 Building wheels for collected packages: omero-web
11:23:18 Building wheel for omero-web (pyproject.toml): started
11:23:19 Building wheel for omero-web (pyproject.toml): finished with status 'done'
11:23:19 Created wheel for omero-web: filename=omero_web-5.32.1.dev0-py3-none-any.whl size=2820229 sha256=d668a67288b29dc34c7115d672bc658a87a82305641e801c2673916212153234
11:23:19 Stored in directory: /home/omero/.cache/pip/wheels/f1/25/17/2aeeabb109d24bc4d86780951b7f1f7cca797777b03207d63c
11:23:19 Successfully built omero-web
11:23:19 Installing collected packages: omero-web
11:23:19 Attempting uninstall: omero-web
11:23:19 Found existing installation: omero-web 5.32.1.dev0
11:23:22 Uninstalling omero-web-5.32.1.dev0:
11:23:22 Successfully uninstalled omero-web-5.32.1.dev0
11:23:31 Successfully installed omero-web-5.32.1.dev0
11:23:32 + pip install omero-certificates
11:23:32 Requirement already satisfied: omero-certificates in ./.venv3/lib64/python3.11/site-packages (0.4.0)
11:23:32 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.23.1.dev0)
11:23:32 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
11:23:32 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
11:23:32 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.6)
11:23:32 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.3.0)
11:23:32 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3)
11:23:32 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
11:23:32 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.34.2)
11:23:32 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0)
11:23:32 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.9)
11:23:32 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.18)
11:23:32 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.7.0)
11:23:32 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.6.17)
11:23:33 + for x in omero-cli-duplicate
11:23:33 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
11:23:33 Collecting omero-cli-duplicate
11:23:33 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-ih6z9ay5/omero-cli-duplicate_2ce20991fc304bd485a7b6c33e5c7125
11:23:33 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-ih6z9ay5/omero-cli-duplicate_2ce20991fc304bd485a7b6c33e5c7125
11:23:35 Running command git checkout -b merge_ci --track origin/merge_ci
11:23:35 Switched to a new branch 'merge_ci'
11:23:35 branch 'merge_ci' set up to track 'origin/merge_ci'.
11:23:35 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 6345558265249172597c35105744a2c3cd2c6d0f
11:23:35 Installing build dependencies: started
11:23:36 Installing build dependencies: finished with status 'done'
11:23:36 Getting requirements to build wheel: started
11:23:37 Getting requirements to build wheel: finished with status 'done'
11:23:37 Preparing metadata (pyproject.toml): started
11:23:37 Preparing metadata (pyproject.toml): finished with status 'done'
11:23:37 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.23.1.dev0)
11:23:37 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
11:23:37 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
11:23:37 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.6)
11:23:37 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.3.0)
11:23:37 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3)
11:23:37 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
11:23:37 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.34.2)
11:23:37 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0)
11:23:37 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.9)
11:23:37 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.18)
11:23:37 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.7.0)
11:23:37 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.6.17)
11:23:37 + source /home/omero/workspace/OMERO-test-integration/src/docs/hudson/functions.sh
11:23:37 + /home/omero/workspace/OMERO-test-integration/src/build.py build-default test-compile
11:23:37 Buildfile: /home/omero/workspace/OMERO-test-integration/src/build.xml
11:23:38
11:23:38 check-ivy:
11:23:38 Creating /home/omero/workspace/OMERO-test-integration/src/etc/local.properties
11:23:38 Created dir: /home/omero/workspace/OMERO-test-integration/src/target
11:23:38 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
11:23:38 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
11:23:39
11:23:39 build-scons:
11:23:39 Expanding: /home/omero/workspace/OMERO-test-integration/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-test-integration/src/target/scons
11:23:41
11:23:41 build:
11:23:41 No sub-builds to iterate on
11:23:41 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb...
11:23:41 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb...
11:23:41 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroFS...
11:23:41 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava...
11:23:41
11:23:41 tools-init:
11:23:41 no-op
11:23:41
11:23:41 retrieve:
11:23:41 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
11:23:41 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
11:24:48
11:24:48 prepare:
11:24:48 Preparing: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs
11:24:48 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/.done
11:24:48 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/src
11:24:48 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources
11:24:48 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes
11:24:48 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/test-classes
11:24:48 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/reports
11:24:48 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources
11:24:48 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes
11:24:48 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources
11:24:48 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes
11:24:48 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources
11:24:48 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes
11:24:48 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources
11:24:48 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes
11:24:48
11:24:48 pre-compile:
11:24:48 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated-classes
11:24:50 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated-classes
11:25:01 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated-classes
11:25:07 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated-classes
11:25:07 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated-classes
11:25:10
11:25:10 compile:
11:25:10 no-op
11:25:10
11:25:10 package:
11:25:10 Building jar: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/omero_client.jar
11:25:14
11:25:14 install:
11:25:14 :: delivering :: omero#omero_client;working@9dd684e5747f :: 5.6.3-642-1621d09097-ice36-b39-ice36 :: integration :: Fri Aug 07 11:23:41 UTC 2026
11:25:14 delivering ivy file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/ivy.xml
11:25:14 :: publishing :: omero#omero_client
11:25:14 published omero_client to /home/omero/workspace/OMERO-test-integration/src/target/repository/omero/omero_client/5.6.3-642-1621d09097-ice36-b39-ice36/omero_client-5.6.3-642-1621d09097-ice36-b39-ice36.jar
11:25:14 published ivy to /home/omero/workspace/OMERO-test-integration/src/target/repository/omero/omero_client/5.6.3-642-1621d09097-ice36-b39-ice36/omero_client-5.6.3-642-1621d09097-ice36-b39-ice36.xml
11:25:14 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy...
11:25:14 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy...
11:25:15
11:25:15 retrieve:
11:25:15 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
11:25:15 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
11:25:15 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools...
11:25:15
11:25:15 dist:
11:25:15 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/target/service-classes/META-INF
11:25:15 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/target/lib/server
11:25:15 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/target/downloads/scripts
11:25:15 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-test-integration/src/components/tools/target/downloads/scripts
11:25:16 Copying 29 files to /home/omero/workspace/OMERO-test-integration/src/components/tools/target/lib/scripts
11:25:16 Copying 29 files to /home/omero/workspace/OMERO-test-integration/src/dist
11:25:17 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-test-integration/src/dist
11:25:17 Entering /home/omero/workspace/OMERO-test-integration/src/components/tests...
11:25:17 Entering /home/omero/workspace/OMERO-test-integration/src/components/tests/ui...
11:25:17
11:25:17 copy-licenses:
11:25:17 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/dist
11:25:17 Created dir: /home/omero/workspace/OMERO-test-integration/src/dist/share
11:25:17 Copying 44 files to /home/omero/workspace/OMERO-test-integration/src/dist/share
11:25:17
11:25:17 copy-history:
11:25:17 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/dist
11:25:17
11:25:17 copy-etc:
11:25:17 Copying 28 files to /home/omero/workspace/OMERO-test-integration/src/dist/etc
11:25:18 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/dist/etc/templates
11:25:18
11:25:18 copy-sql:
11:25:18 Copying 60 files to /home/omero/workspace/OMERO-test-integration/src/dist
11:25:28
11:25:28 copy-server:
11:25:28 conflict on /home/omero/workspace/OMERO-test-integration/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
11:25:33
11:25:33 copy-client:
11:25:33 Created dir: /home/omero/workspace/OMERO-test-integration/src/dist/lib/client
11:25:37 conflict on /home/omero/workspace/OMERO-test-integration/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
11:25:45
11:25:45 update-version:
11:25:45 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/dist/etc
11:25:45
11:25:45 create-workdirs:
11:25:45 Created dir: /home/omero/workspace/OMERO-test-integration/src/dist/etc/grid
11:25:45 Created dir: /home/omero/workspace/OMERO-test-integration/src/dist/var
11:25:45 Created dir: /home/omero/workspace/OMERO-test-integration/src/dist/var/tmp
11:25:45
11:25:45 copy-luts:
11:25:45 Created dir: /home/omero/workspace/OMERO-test-integration/src/dist/lib/scripts/luts
11:25:45 Copying 47 files to /home/omero/workspace/OMERO-test-integration/src/dist/lib/scripts/luts
11:25:46
11:25:46 test-compile:
11:25:46 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
11:25:46 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroFS...
11:25:46 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy...
11:25:46 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy...
11:25:46 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb...
11:25:46 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb...
11:25:46 Entering /home/omero/workspace/OMERO-test-integration/src/components/tests/ui...
11:25:46 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava...
11:25:46
11:25:46 testng-init:
11:25:46 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
11:25:46 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
11:25:56 11:25:55,640 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16
11:25:56 11:25:55,643 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1e7544bc - No custom configurators were discovered as a service.
11:25:56 11:25:55,643 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1e7544bc - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
11:25:56 11:25:55,647 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1e7544bc - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
11:25:56 11:25:55,654 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
11:25:56 11:25:55,657 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
11:25:56 11:25:55,658 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1e7544bc - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 11 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
11:25:56 11:25:55,658 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1e7544bc - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
11:25:56 11:25:55,660 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1e7544bc - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
11:25:56 11:25:55,664 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
11:25:56 11:25:55,665 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml]
11:25:56 11:25:55,668 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@60b73425 - Resource [logback.xml] occurs multiple times on the classpath.
11:25:56 11:25:55,668 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@60b73425 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml]
11:25:56 11:25:55,668 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@60b73425 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
11:25:56 11:25:55,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
11:25:56 11:25:55,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
11:25:56 11:25:55,930 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
11:25:56 11:25:55,932 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@33bc7565 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
11:25:56 11:25:55,932 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@33bc7565 - Please move "immediateFlush" property into the enclosing appender.
11:25:56 11:25:56,004 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@33bc7565 - Setting the "immediateFlush" property of the enclosing appender to true
11:25:56 11:25:56,005 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
11:25:56 11:25:56,005 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
11:25:56 11:25:56,005 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
11:25:56 11:25:56,005 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
11:25:56 11:25:56,005 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
11:25:56 11:25:56,005 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
11:25:56 11:25:56,007 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7bca96d6 - End of configuration.
11:25:56 11:25:56,009 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f2e6db7 - Registering current configuration as safe fallback point
11:25:56 11:25:56,009 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1e7544bc - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 349 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
11:25:56
11:25:56 lifecycle.test-compile:
11:25:56 Copying 3 files to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/test-classes
11:25:56 Compiling 85 source files to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/test-classes
11:25:56 warning: [options] bootstrap class path not set in conjunction with -source 8
11:25:56 warning: [options] source value 8 is obsolete and will be removed in a future release
11:25:56 warning: [options] target value 8 is obsolete and will be removed in a future release
11:25:56 warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
11:25:58 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:25:58 import omero.grid.RawAccessRequest;
11:25:58 ^
11:25:58 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:25:58 import omero.grid.RawAccessRequest;
11:25:58 ^
11:25:59 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:25:59 import omero.grid.RawAccessRequest;
11:25:59 ^
11:25:59 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
11:25:59 import omero.model.ImportJob;
11:25:59 ^
11:25:59 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
11:25:59 import omero.model.ImportJobI;
11:25:59 ^
11:26:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
11:26:00 IObject link = (IObject) linkClass.newInstance();
11:26:00 ^
11:26:00 where T is a type-variable:
11:26:00 T extends Object declared in class Class
11:26:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
11:26:00 T copy = (T) obj.getClass().newInstance();
11:26:00 ^
11:26:00 where T is a type-variable:
11:26:00 T extends Object declared in class Class
11:26:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:26:00 RawAccessRequest raw = new RawAccessRequest();
11:26:00 ^
11:26:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:26:00 RawAccessRequest raw = new RawAccessRequest();
11:26:00 ^
11:26:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
11:26:00 raw.repoUuid = legacy.root().getHash().getValue();
11:26:00 ^
11:26:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
11:26:00 raw.command = "rm";
11:26:00 ^
11:26:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
11:26:00 raw.args = Arrays.asList(path);
11:26:00 ^
11:26:00 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
11:26:00 final IObject link = linkClass.newInstance();
11:26:00 ^
11:26:00 where T is a type-variable:
11:26:00 T extends Object declared in class Class
11:26:01 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
11:26:01 originalLink.setChild(annotationClass.newInstance());
11:26:01 ^
11:26:01 where T is a type-variable:
11:26:01 T extends Object declared in class Class
11:26:01 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
11:26:01 RoiResult r = svc.findByImage(id, new RoiOptions());
11:26:01 ^
11:26:01 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:26:01 final RawAccessRequest request = new RawAccessRequest();
11:26:01 ^
11:26:01 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:26:01 final RawAccessRequest request = new RawAccessRequest();
11:26:01 ^
11:26:01 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
11:26:01 request.repoUuid = repo.root().getHash().getValue();
11:26:01 ^
11:26:01 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
11:26:01 request.command = "exists";
11:26:01 ^
11:26:01 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
11:26:01 request.args = Collections.singletonList(dirPath);
11:26:01 ^
11:26:01 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:26:01 final RawAccessRequest request = new RawAccessRequest();
11:26:01 ^
11:26:01 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
11:26:01 final RawAccessRequest request = new RawAccessRequest();
11:26:01 ^
11:26:01 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
11:26:01 request.repoUuid = repo.root().getHash().getValue();
11:26:01 ^
11:26:01 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
11:26:01 request.command = "exists";
11:26:01 ^
11:26:01 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
11:26:01 request.args = Collections.singletonList(dirName);
11:26:01 ^
11:26:02 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
11:26:02 final ImportJob importJob = new ImportJobI();
11:26:02 ^
11:26:02 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
11:26:02 final ImportJob importJob = new ImportJobI();
11:26:02 ^
11:26:02 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
11:26:02 importJob.setImageName(omero.rtypes.rstring(name));
11:26:02 ^
11:26:02 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
11:26:02 importJob.setImageDescription(omero.rtypes.rstring(desc));
11:26:02 ^
11:26:02 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
11:26:02 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
11:26:02 ^
11:26:02 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
11:26:02 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
11:26:02 ^
11:26:02 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
11:26:02 final String savedName = sent.getImageName().getValue().toString();
11:26:02 ^
11:26:02 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
11:26:02 final String savedDesc = sent.getImageDescription().getValue().toString();
11:26:02 ^
11:26:02 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
11:26:02 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
11:26:02 ^
11:26:02 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
11:26:02 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
11:26:02 ^
11:26:02 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
11:26:02 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
11:26:02 ^
11:26:02 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
11:26:02 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
11:26:02 ^
11:26:02 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
11:26:02 RoiResult r = svc.findByImage(image.getId().getValue(),
11:26:02 ^
11:26:02 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:26:02 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
11:26:02 ^
11:26:02 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:26:02 l = svc.getRoiMeasurements(image.getId().getValue(), options);
11:26:02 ^
11:26:02 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:26:02 l = svc.getRoiMeasurements(image.getId().getValue(), options);
11:26:02 ^
11:26:02 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:26:02 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
11:26:02 ^
11:26:02 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
11:26:02 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
11:26:02 ^
11:26:02 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:26:02 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
11:26:02 ^
11:26:02 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
11:26:02 table = svc.getTable(f.getId().getValue());
11:26:02 ^
11:26:02 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
11:26:02 RoiResult r = svc.findByImage(image.getId().getValue(),
11:26:02 ^
11:26:02 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
11:26:02 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
11:26:02 ^
11:26:02 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
11:26:02 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
11:26:02 ^
11:26:02 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
11:26:02 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
11:26:02 ^
11:26:02 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
11:26:02 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
11:26:02 ^
11:26:02 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:26:02 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
11:26:02 ^
11:26:02 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:26:02 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
11:26:02 ^
11:26:02 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:26:02 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
11:26:02 ^
11:26:02 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:26:02 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
11:26:02 ^
11:26:02 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
11:26:02 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
11:26:02 ^
11:26:02 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:26:02 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
11:26:02 ^
11:26:02 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:26:02 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
11:26:02 ^
11:26:02 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:26:02 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
11:26:02 ^
11:26:02 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:26:02 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
11:26:02 ^
11:26:02 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:26:02 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
11:26:02 ^
11:26:02 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:26:02 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
11:26:02 ^
11:26:02 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:26:02 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
11:26:02 ^
11:26:02 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:26:02 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
11:26:02 ^
11:26:02 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:26:02 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
11:26:02 ^
11:26:02 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:26:02 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
11:26:02 ^
11:26:02 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:26:02 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
11:26:02 ^
11:26:02 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
11:26:02 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
11:26:02 ^
11:26:02 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
11:26:02 svc.getShapeStatsRestricted(
11:26:02 ^
11:26:02 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
11:26:02 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
11:26:02 ^
11:26:03 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
11:26:03 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
11:26:03 ^
11:26:03 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
11:26:03 request.typesToIgnore = Collections.singletonList("TagAnnotation");
11:26:03 ^
11:26:03 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
11:26:03 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
11:26:03 ^
11:26:03 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
11:26:03 request.typesToIgnore = Collections.singletonList("Annotation");
11:26:03 ^
11:26:03 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
11:26:03 request.typesToIgnore = Collections.singletonList("Annotation");
11:26:03 ^
11:26:03 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
11:26:03 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
11:26:03 ^
11:26:03 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
11:26:03 p2.setRelatedTo(p1);
11:26:03 ^
11:26:03 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
11:26:03 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
11:26:03 ^
11:26:03 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
11:26:03 pixels1.setRelatedTo(pixels2);
11:26:03 ^
11:26:03 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
11:26:03 Pixels pixels = pixels1.getRelatedTo();
11:26:03 ^
11:26:03 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
11:26:03 Assert.assertNull(pixels1.getRelatedTo());
11:26:03 ^
11:26:03 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
11:26:03 pixels1.setRelatedTo(pixels2);
11:26:03 ^
11:26:03 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
11:26:03 Pixels pixels = pixels1.getRelatedTo();
11:26:03 ^
11:26:03 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
11:26:03 Assert.assertNull(pixels1.getRelatedTo());
11:26:03 ^
11:26:03 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:26:03 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
11:26:03 ^
11:26:03 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:26:03 l = svc.getRoiMeasurements(image.getId().getValue(), options);
11:26:03 ^
11:26:03 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:26:03 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
11:26:03 ^
11:26:03 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
11:26:03 l = svc.getRoiMeasurements(image.getId().getValue(), options);
11:26:03 ^
11:26:04 Note: Some input files use unchecked or unsafe operations.
11:26:04 Note: Recompile with -Xlint:unchecked for details.
11:26:04 91 warnings
11:26:04 Deleting: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/_omero_build_1747845696.tmp
11:26:04 Building jar: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/OmeroJava-test.jar
11:26:05 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
11:26:05 :: delivering :: omero#OmeroJava-test;working@9dd684e5747f :: 5.6.3-642-1621d09097-ice36-b39-ice36 :: integration :: Fri Aug 07 11:25:46 UTC 2026
11:26:05 delivering ivy file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/OmeroJava-test.xml
11:26:05 :: publishing :: omero#OmeroJava-test
11:26:06 published OmeroJava-test to /home/omero/workspace/OMERO-test-integration/src/target/test-repository/OmeroJava-test-5.6.3-642-1621d09097-ice36-b39-ice36.jar
11:26:06 published ivy to /home/omero/workspace/OMERO-test-integration/src/target/test-repository/OmeroJava-test-5.6.3-642-1621d09097-ice36-b39-ice36.xml
11:26:06
11:26:06 BUILD SUCCESSFUL
11:26:06 Total time: 2 minutes 28 seconds
11:26:06 + OMERO_DIST=/home/omero/workspace/OMERO-test-integration/src/dist
11:26:06 + export OMERODIR=/home/omero/workspace/OMERO-test-integration/src/dist
11:26:06 + OMERODIR=/home/omero/workspace/OMERO-test-integration/src/dist
11:26:06 + omero config set omero.db.name OMERO-test-integration
11:26:09 + omero config set omero.db.host pg
11:26:11 + omero config set omero.db.user postgres
11:26:13 + omero config set omero.db.poolsize 50
11:26:15 + omero config set omero.jvmcfg.max_system_memory.blitz 64000
11:26:17 + omero config set omero.data.dir /home/omero/workspace/OMERO-test-integration/data
11:26:19 + omero config set omero.ports.prefix 1
11:26:21 + omero config set omero.web.server_list '[["testintegration",14064,"testintegration"]]'
11:26:23 + omero config set omero.server.nodedescriptors master:Blitz-0,Processor-0,Tables-0,Indexer-0,DropBox,MonitorServer,FileServer,Storm
11:26:25 + omero certificates
11:26:27 OpenSSL 3.5.5 27 Jan 2026 (Library: OpenSSL 3.5.5 27 Jan 2026)
11:26:27 certificates created: /home/omero/workspace/OMERO-test-integration/data/certs/server.key /home/omero/workspace/OMERO-test-integration/data/certs/server.pem /home/omero/workspace/OMERO-test-integration/data/certs/server.p12
11:26:28 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
11:26:30 + createdb -h pg -U postgres OMERO-test-integration
11:26:33 + omero db script -f dbsetup.sql '' '' omero
11:26:35 WARNING: Positional arguments are deprecated
11:26:36 Using OMERO5.4 for version
11:26:36 Using 0 for patch
11:26:36 Using password from commandline
11:26:37 + psql -h pg -U postgres -d OMERO-test-integration -f dbsetup.sql
11:26:38 BEGIN
11:26:38 CREATE FUNCTION
11:26:38 CREATE FUNCTION
11:26:38 assert_db_server_prerequisites
11:26:38 --------------------------------
11:26:38
11:26:38 (1 row)
11:26:38
11:26:38 DROP FUNCTION
11:26:38 DROP FUNCTION
11:26:38 CREATE DOMAIN
11:26:38 CREATE DOMAIN
11:26:38 CREATE DOMAIN
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11:26:38 CREATE TYPE
11:26:38 CREATE TYPE
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11:26:46 psql:dbsetup.sql:2842: NOTICE: identifier "fkcontraststretchingcontext_codomainmapcontext_id_codomainmapcontext" will be truncated to "fkcontraststretchingcontext_codomainmapcontext_id_codomainmapco"
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11:26:47 psql:dbsetup.sql:4712: NOTICE: identifier "fklogicalchannel_photometricinterpretation_photometricinterpretation" will be truncated to "fklogicalchannel_photometricinterpretation_photometricinterpret"
11:26:47 ALTER TABLE
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11:26:48 psql:dbsetup.sql:5697: NOTICE: identifier "fkreverseintensitycontext_codomainmapcontext_id_codomainmapcontext" will be truncated to "fkreverseintensitycontext_codomainmapcontext_id_codomainmapcont"
11:26:48 ALTER TABLE
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11:26:48 CREATE TABLE
11:26:48 DROP TABLE
11:26:48 CREATE VIEW
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11:26:48 CREATE VIEW
11:26:48 DROP TABLE
11:26:48 CREATE VIEW
11:26:48 CREATE FUNCTION
11:26:48 CREATE TRIGGER
11:26:48 CREATE FUNCTION
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11:26:48 CREATE TRIGGER
11:26:48 CREATE FUNCTION
11:26:48 CREATE TRIGGER
11:26:48 CREATE FUNCTION
11:26:48 CREATE TRIGGER
11:26:48 CREATE INDEX
11:26:48 CREATE INDEX
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11:26:52 CREATE INDEX
11:26:52 CREATE INDEX
11:26:52 CREATE INDEX
11:26:52 CREATE INDEX
11:26:52 CREATE INDEX
11:26:52 CREATE INDEX
11:26:52 CREATE INDEX
11:26:52 CREATE INDEX
11:26:52 CREATE INDEX
11:26:52 CREATE INDEX
11:26:52 CREATE INDEX
11:26:52 CREATE INDEX
11:26:52 CREATE INDEX
11:26:52 CREATE INDEX
11:26:52 CREATE INDEX
11:26:52 CREATE INDEX
11:26:52 CREATE INDEX
11:26:52 CREATE INDEX
11:26:52 CREATE INDEX
11:26:52 CREATE INDEX
11:26:52 CREATE INDEX
11:26:52 CREATE INDEX
11:26:52 CREATE INDEX
11:26:52 CREATE INDEX
11:26:52 CREATE INDEX
11:26:52 CREATE INDEX
11:26:52 CREATE INDEX
11:26:52 CREATE INDEX
11:26:52 CREATE INDEX
11:26:52 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:53 CREATE INDEX
11:26:54 CREATE INDEX
11:26:54 CREATE INDEX
11:26:54 CREATE INDEX
11:26:54 CREATE INDEX
11:26:54 CREATE INDEX
11:26:54 CREATE INDEX
11:26:54 CREATE INDEX
11:26:54 CREATE INDEX
11:26:54 CREATE INDEX
11:26:54 CREATE INDEX
11:26:54 CREATE INDEX
11:26:54 CREATE INDEX
11:26:54 CREATE INDEX
11:26:54 CREATE INDEX
11:26:54 CREATE INDEX
11:26:54 CREATE INDEX
11:26:54 CREATE INDEX
11:26:54 CREATE INDEX
11:26:54 CREATE INDEX
11:26:54 CREATE INDEX
11:26:54 CREATE INDEX
11:26:54 CREATE INDEX
11:26:54 CREATE INDEX
11:26:54 CREATE INDEX
11:26:54 CREATE INDEX
11:26:54 CREATE INDEX
11:26:54 CREATE INDEX
11:26:54 CREATE INDEX
11:26:54 CREATE INDEX
11:26:54 CREATE INDEX
11:26:54 CREATE INDEX
11:26:54 CREATE INDEX
11:26:54 CREATE INDEX
11:26:54 CREATE INDEX
11:26:54 CREATE INDEX
11:26:54 CREATE INDEX
11:26:54 CREATE INDEX
11:26:54 CREATE FUNCTION
11:26:54 SET CONSTRAINTS
11:26:54 CREATE FUNCTION
11:26:54 CREATE SEQUENCE
11:26:54 ALTER TABLE
11:26:54 ALTER TABLE
11:26:54 ALTER TABLE
11:26:54 ALTER TABLE
11:26:54 ALTER TABLE
11:26:54 CREATE INDEX
11:26:54 CREATE FUNCTION
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:54 CREATE SEQUENCE
11:26:54 INSERT 0 1
11:26:55 CREATE SEQUENCE
11:26:55 INSERT 0 1
11:26:55 CREATE SEQUENCE
11:26:55 INSERT 0 1
11:26:55 CREATE SEQUENCE
11:26:55 INSERT 0 1
11:26:55 CREATE SEQUENCE
11:26:55 INSERT 0 1
11:26:55 CREATE SEQUENCE
11:26:55 INSERT 0 1
11:26:55 CREATE SEQUENCE
11:26:55 INSERT 0 1
11:26:55 CREATE SEQUENCE
11:26:55 INSERT 0 1
11:26:55 CREATE SEQUENCE
11:26:55 INSERT 0 1
11:26:55 CREATE SEQUENCE
11:26:55 INSERT 0 1
11:26:55 CREATE SEQUENCE
11:26:55 INSERT 0 1
11:26:55 CREATE SEQUENCE
11:26:55 INSERT 0 1
11:26:55 CREATE SEQUENCE
11:26:55 INSERT 0 1
11:26:55 CREATE SEQUENCE
11:26:55 INSERT 0 1
11:26:55 CREATE SEQUENCE
11:26:55 INSERT 0 1
11:26:55 CREATE SEQUENCE
11:26:55 INSERT 0 1
11:26:55 CREATE SEQUENCE
11:26:55 INSERT 0 1
11:26:55 CREATE SEQUENCE
11:26:55 INSERT 0 1
11:26:55 CREATE SEQUENCE
11:26:55 INSERT 0 1
11:26:55 CREATE SEQUENCE
11:26:55 INSERT 0 1
11:26:55 CREATE SEQUENCE
11:26:55 INSERT 0 1
11:26:55 CREATE SEQUENCE
11:26:55 INSERT 0 1
11:26:55 CREATE SEQUENCE
11:26:55 INSERT 0 1
11:26:55 CREATE SEQUENCE
11:26:55 INSERT 0 1
11:26:55 CREATE SEQUENCE
11:26:55 INSERT 0 1
11:26:55 CREATE SEQUENCE
11:26:55 INSERT 0 1
11:26:55 CREATE SEQUENCE
11:26:55 INSERT 0 1
11:26:55 CREATE SEQUENCE
11:26:55 INSERT 0 1
11:26:55 CREATE SEQUENCE
11:26:55 INSERT 0 1
11:26:55 CREATE SEQUENCE
11:26:55 INSERT 0 1
11:26:55 CREATE SEQUENCE
11:26:55 INSERT 0 1
11:26:55 CREATE SEQUENCE
11:26:55 INSERT 0 1
11:26:55 CREATE SEQUENCE
11:26:55 INSERT 0 1
11:26:55 CREATE SEQUENCE
11:26:55 INSERT 0 1
11:26:55 CREATE SEQUENCE
11:26:55 INSERT 0 1
11:26:55 CREATE SEQUENCE
11:26:55 INSERT 0 1
11:26:55 CREATE SEQUENCE
11:26:55 INSERT 0 1
11:26:55 CREATE SEQUENCE
11:26:55 INSERT 0 1
11:26:55 CREATE SEQUENCE
11:26:55 INSERT 0 1
11:26:55 CREATE SEQUENCE
11:26:55 INSERT 0 1
11:26:55 CREATE SEQUENCE
11:26:55 INSERT 0 1
11:26:55 CREATE SEQUENCE
11:26:55 INSERT 0 1
11:26:55 CREATE SEQUENCE
11:26:55 INSERT 0 1
11:26:55 CREATE FUNCTION
11:26:55 CREATE FUNCTION
11:26:55 CREATE FUNCTION
11:26:55 CREATE TABLE
11:26:55 CREATE INDEX
11:26:55 CREATE INDEX
11:26:55 CREATE FUNCTION
11:26:55 CREATE TRIGGER
11:26:55 CREATE FUNCTION
11:26:55 CREATE FUNCTION
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE FUNCTION
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE FUNCTION
11:26:55 CREATE FUNCTION
11:26:55 CREATE FUNCTION
11:26:55 CREATE FUNCTION
11:26:55 CREATE FUNCTION
11:26:55 CREATE FUNCTION
11:26:55 CREATE FUNCTION
11:26:55 CREATE FUNCTION
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE TRIGGER
11:26:55 CREATE FUNCTION
11:26:55 CREATE TRIGGER
11:26:55 CREATE FUNCTION
11:26:55 CREATE TRIGGER
11:26:55 CREATE FUNCTION
11:26:55 CREATE TRIGGER
11:26:55 CREATE FUNCTION
11:26:55 CREATE TRIGGER
11:26:55 CREATE FUNCTION
11:26:55 CREATE TRIGGER
11:26:55 CREATE FUNCTION
11:26:55 CREATE TRIGGER
11:26:55 CREATE FUNCTION
11:26:55 CREATE TRIGGER
11:26:55 CREATE FUNCTION
11:26:55 CREATE TRIGGER
11:26:55 ALTER TABLE
11:26:55 ALTER TABLE
11:26:55 ALTER TABLE
11:26:55 INSERT 0 1
11:26:55 ALTER TABLE
11:26:55 ALTER TABLE
11:26:55 ALTER TABLE
11:26:55 ALTER TABLE
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 UPDATE 1
11:26:55 UPDATE 1
11:26:55 ALTER TABLE
11:26:55 ALTER TABLE
11:26:55 ALTER TABLE
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
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11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
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11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
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11:26:55 INSERT 0 1
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11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
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11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
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11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
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11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
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11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
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11:26:55 INSERT 0 1
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11:26:55 INSERT 0 1
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11:26:55 INSERT 0 1
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11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 INSERT 0 1
11:26:55 UPDATE 1
11:26:55 UPDATE 1
11:26:55 UPDATE 1
11:26:55 UPDATE 1
11:26:55 UPDATE 1
11:26:55 UPDATE 1
11:26:55 UPDATE 1
11:26:55 UPDATE 1
11:26:55 UPDATE 1
11:26:55 UPDATE 1
11:26:55 UPDATE 1
11:26:55 ALTER TABLE
11:26:55 CREATE FUNCTION
11:26:55 CREATE TABLE
11:26:55 INSERT 0 1
11:26:55 ALTER TABLE
11:26:55 ALTER TABLE
11:26:55 ALTER TABLE
11:26:55 CREATE INDEX
11:26:55 ALTER TABLE
11:26:55 ALTER TABLE
11:26:55 CREATE INDEX
11:26:55 CREATE INDEX
11:26:55 CREATE INDEX
11:26:55 CREATE INDEX
11:26:55 CREATE INDEX
11:26:55 ALTER TABLE
11:26:55 CREATE INDEX
11:26:55 CREATE INDEX
11:26:55 CREATE INDEX
11:26:55 CREATE INDEX
11:26:55 CREATE INDEX
11:26:55 CREATE INDEX
11:26:55 CREATE INDEX
11:26:55 CREATE INDEX
11:26:55 CREATE INDEX
11:26:56 CREATE INDEX
11:26:56 CREATE INDEX
11:26:56 CREATE INDEX
11:26:56 CREATE INDEX
11:26:56 CREATE INDEX
11:26:56 CREATE INDEX
11:26:56 CREATE INDEX
11:26:56 CREATE INDEX
11:26:56 CREATE INDEX
11:26:56 CREATE INDEX
11:26:56 CREATE INDEX
11:26:56 CREATE INDEX
11:26:56 CREATE TABLE
11:26:56 INSERT 0 1
11:26:56 INSERT 0 1
11:26:56 CREATE TABLE
11:26:56 INSERT 0 1
11:26:56 CREATE FUNCTION
11:26:56 CREATE TRIGGER
11:26:56 CREATE FUNCTION
11:26:56 CREATE TRIGGER
11:26:56 CREATE FUNCTION
11:26:56 CREATE TRIGGER
11:26:56 CREATE FUNCTION
11:26:56 CREATE TRIGGER
11:26:56 CREATE FUNCTION
11:26:56 CREATE TRIGGER
11:26:56 CREATE FUNCTION
11:26:56 CREATE TRIGGER
11:26:56 CREATE FUNCTION
11:26:56 CREATE TRIGGER
11:26:56 CREATE TABLE
11:26:56 CREATE INDEX
11:26:56 CREATE INDEX
11:26:56 CREATE INDEX
11:26:56 CREATE INDEX
11:26:56 CREATE INDEX
11:26:56 CREATE INDEX
11:26:56 CREATE INDEX
11:26:56 CREATE FUNCTION
11:26:56 CREATE TRIGGER
11:26:56 ALTER TABLE
11:26:56 ALTER TABLE
11:26:56 ALTER TABLE
11:26:56 ALTER TABLE
11:26:57 ALTER TABLE
11:26:57 ALTER TABLE
11:26:57 ALTER TABLE
11:26:57 ALTER TABLE
11:26:57 ALTER TABLE
11:26:57 ALTER TABLE
11:26:58 ALTER TABLE
11:26:58 ALTER TABLE
11:26:58 ALTER TABLE
11:26:58 CREATE FUNCTION
11:26:58 CREATE TRIGGER
11:26:58 CREATE FUNCTION
11:26:58 CREATE FUNCTION
11:26:58 CREATE FUNCTION
11:26:58 CREATE TRIGGER
11:26:58 CREATE TRIGGER
11:26:58 CREATE TRIGGER
11:26:58 DROP TABLE
11:26:58 DROP TABLE
11:26:58 DROP TABLE
11:26:58 DROP TABLE
11:26:58 DROP TABLE
11:26:58 CREATE VIEW
11:26:58 CREATE VIEW
11:26:58 CREATE VIEW
11:26:58 CREATE VIEW
11:26:58 CREATE VIEW
11:26:58 ALTER TABLE
11:26:58 ALTER TABLE
11:26:58 ALTER TABLE
11:26:58 ALTER TABLE
11:26:58 ALTER TABLE
11:26:58 ALTER TABLE
11:26:58 ALTER TABLE
11:26:58 ALTER TABLE
11:26:58 ALTER TABLE
11:26:58 ALTER TABLE
11:26:58 ALTER TABLE
11:26:58 ALTER TABLE
11:26:58 ALTER TABLE
11:26:58 ALTER TABLE
11:26:58 ALTER TABLE
11:26:58 ALTER TABLE
11:26:58 ALTER TABLE
11:26:58 ALTER TABLE
11:26:58 ALTER TABLE
11:26:58 ALTER TABLE
11:26:58 ALTER TABLE
11:26:58 ALTER TABLE
11:26:58 ALTER TABLE
11:26:58 ALTER TABLE
11:26:58 ALTER TABLE
11:26:58 ALTER TABLE
11:26:58 ALTER TABLE
11:26:58 ALTER TABLE
11:26:58 ALTER TABLE
11:26:58 ALTER TABLE
11:26:58 ALTER TABLE
11:26:58 ALTER TABLE
11:26:58 ALTER TABLE
11:26:58 ALTER TABLE
11:26:58 ALTER TABLE
11:26:58 ALTER TABLE
11:26:58 ALTER TABLE
11:26:58 ALTER TABLE
11:26:58 ALTER TABLE
11:26:58 ALTER TABLE
11:26:58 ALTER TABLE
11:26:58 ALTER TABLE
11:26:58 ALTER TABLE
11:26:58 ALTER TABLE
11:26:58 ALTER TABLE
11:26:58 ALTER TABLE
11:26:58 ALTER TABLE
11:26:58 ALTER TABLE
11:26:58 ALTER TABLE
11:26:58 CREATE FUNCTION
11:26:58 CREATE TRIGGER
11:26:58 CREATE TABLE
11:26:58 CREATE INDEX
11:26:58 CREATE FUNCTION
11:26:58 CREATE FUNCTION
11:26:58 CREATE FUNCTION
11:26:58 CREATE FUNCTION
11:26:58 CREATE TRIGGER
11:26:58 CREATE TRIGGER
11:26:58 CREATE TRIGGER
11:26:58 CREATE TRIGGER
11:26:58 CREATE FUNCTION
11:26:58 CREATE FUNCTION
11:26:58 CREATE TRIGGER
11:26:58 CREATE TRIGGER
11:26:58 CREATE INDEX
11:26:58 UPDATE 1
11:26:59 COMMIT
11:26:59 + rm dbsetup.sql
11:26:59 + export OMERO_PROFILE=/home/omero/workspace/OMERO-test-integration/config
11:26:59 + OMERO_PROFILE=/home/omero/workspace/OMERO-test-integration/config
11:26:59 + mkdir -p /home/omero/workspace/OMERO-test-integration/config/blitz
11:26:59 + cp /home/omero/workspace/OMERO-test-integration/src/dist/etc/blitz/mail-senders.example /home/omero/workspace/OMERO-test-integration/src/dist/etc/blitz/mail-server.example /home/omero/workspace/OMERO-test-integration/config/blitz
11:26:59 + for f in $OMERO_PROFILE/blitz/*
11:26:59 ++ basename /home/omero/workspace/OMERO-test-integration/config/blitz/mail-senders.example .example
11:26:59 + mv /home/omero/workspace/OMERO-test-integration/config/blitz/mail-senders.example /home/omero/workspace/OMERO-test-integration/config/blitz/mail-senders.xml
11:26:59 + for f in $OMERO_PROFILE/blitz/*
11:26:59 ++ basename /home/omero/workspace/OMERO-test-integration/config/blitz/mail-server.example .example
11:26:59 + mv /home/omero/workspace/OMERO-test-integration/config/blitz/mail-server.example /home/omero/workspace/OMERO-test-integration/config/blitz/mail-server.xml
11:26:59 + omero config set omero.mail.config true
11:27:01 + omero config set omero.mail.fake true
11:27:03 + omero config set omero.mail.port 2525
11:27:05 + BUILD_ID=DONT_KILL_ME
11:27:05 + omero admin start
11:27:13 No descriptor given. Using etc/grid/default.xml
11:27:25 Creating /home/omero/workspace/OMERO-test-integration/src/dist/var/master
11:27:25 Initializing /home/omero/workspace/OMERO-test-integration/src/dist/var/log
11:27:25 Creating /home/omero/workspace/OMERO-test-integration/src/dist/var/registry
11:27:25 Waiting on startup. Use CTRL-C to exit
11:27:25 + omero admin waitup
11:27:28 Waiting on startup. Use CTRL-C to exit
11:27:28 + omero admin diagnostics
11:27:30
11:27:30 ================================================================================
11:27:30 OMERO Diagnostics (admin)
11:27:30 ================================================================================
11:27:30
11:27:30 Commands: java -version 21.0.12 (/usr/bin/java)
11:27:30 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-test-integration/.venv3/bin/python)
11:27:30 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
11:27:30 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
11:27:30 Commands: psql --version 16.14 (/usr/bin/psql)
11:27:30 Commands: openssl version 3.5.527 (/usr/bin/openssl)
11:27:30
11:27:30 Component: OMERO.py 5.23.1.dev0
11:27:30 Component: OMERO.server 5.6.3-642-1621d09097-ice36-b39-ice36
11:27:30
11:27:30 Server: icegridnode running
11:27:30 Server: Blitz-0 active (pid = 1031133, enabled)
11:27:30 Server: DropBox active (pid = 1031163, enabled)
11:27:30 Server: FileServer active (pid = 1031156, enabled)
11:27:30 Server: Indexer-0 activating (enabled)
11:27:30 Server: MonitorServer active (pid = 1031164, enabled)
11:27:30 Server: OMERO.Glacier2 active (pid = 1031167, enabled)
11:27:30 Server: OMERO.IceStorm active (pid = 1031184, enabled)
11:27:30 Server: Processor-0 active (pid = 1031192, enabled)
11:27:30 Server: Tables-0 active (pid = 1031165, enabled)
11:27:30
11:27:30 Log dir: /home/omero/workspace/OMERO-test-integration/src/dist/var/log exists
11:27:30 Log files: Blitz-0.log 149.5 KB errors=0 warnings=3
11:27:30 Log files: DropBox.log 1.4 KB
11:27:30 Log files: FileServer.log 114 B
11:27:30 Log files: Indexer-0.log 2.6 KB errors=0 warnings=2
11:27:30 Log files: MonitorServer.log 1.2 KB
11:27:30 Log files: Processor-0.log 735 B
11:27:30 Log files: Tables-0.log 961 B
11:27:30 Log files: TestDropBox.log n/a
11:27:30 Log files: master.err empty
11:27:30 Log files: master.out 30.6 KB
11:27:30 Log files: Total size 0.19 MB
11:27:30
11:27:30
11:27:30 Environment:OMERO_HOME=(unset)
11:27:30 Environment:OMERODIR=/home/omero/workspace/OMERO-test-integration/src/dist
11:27:30 Environment:OMERO_NODE=(unset)
11:27:30 Environment:OMERO_MASTER=(unset)
11:27:30 Environment:OMERO_USERDIR=(unset)
11:27:30 Environment:OMERO_TMPDIR=(unset)
11:27:30 Environment:PATH=/home/omero/workspace/OMERO-test-integration/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
11:27:30 Environment:PYTHONPATH=(unset)
11:27:30 Environment:ICE_HOME=/opt/ice-3.6.5
11:27:30 Environment:LD_LIBRARY_PATH=(unset)
11:27:30 Environment:DYLD_LIBRARY_PATH=(unset)
11:27:30
11:27:30 OMERO SSL port:14064
11:27:30 OMERO TCP port:14063
11:27:30 OMERO data dir:'/home/omero/workspace/OMERO-test-integration/data' Exists? True Is writable? True
11:27:32 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 7118)
11:27:32
11:27:32 JVM settings: Blitz-${index} -Xmx9600m
11:27:32 JVM settings: Indexer-${index} -Xmx4800m
11:27:32 JVM settings: PixelData-${index} -Xmx7200m
11:27:32 JVM settings: Repository-${index} -Xmx4800m
11:27:32
11:27:32 Jar: lib/server/formats-api.jar Bio-Formats API 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce
11:27:32 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce
11:27:32 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce
11:27:32 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3 26 February 2026 70fd9b72a9834f1af4852c1e5b5676c57a2c360e
11:27:32 Jar: lib/server/ome-common.jar OME Common Java 6.2.1 27 February 2026 a24fbcbf04a3a3acba14e9575d7fb1d36a484dff
11:27:32 Jar: lib/server/ome-jai.jar OME JAI 0.1.5 30 June 2025 257a1c1410c0103485248d05752a5174262a38b6
11:27:32 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4 25 June 2025 57553b46e5f0cf9aefe5d97d2b1c8dd2073a4d37
11:27:32 Jar: lib/server/ome-poi.jar OME POI 5.3.11 11 November 2025 a2f3944ac71db9e7e51a6f64ec46beeb60613afb
11:27:32 Jar: lib/server/ome-xml.jar OME XML library 6.5.3 22 January 2026 21d1362abd9ce26e13888d2b2d028753d21ac96e
11:27:32 Jar: lib/server/omero-blitz.jar jar 5.8.6-SNAPSHOT
11:27:32 Jar: lib/server/omero-common.jar jar 5.7.6-SNAPSHOT
11:27:32 Jar: lib/server/omero-gateway.jar jar 5.11.1-SNAPSHOT
11:27:32 Jar: lib/server/omero-model.jar jar 5.7.6-SNAPSHOT
11:27:32 Jar: lib/server/omero-renderer.jar jar 5.6.6-SNAPSHOT
11:27:32 Jar: lib/server/omero-romio.jar jar 5.8.6-SNAPSHOT
11:27:32 Jar: lib/server/omero-server.jar jar 5.7.6-SNAPSHOT
11:27:32 + export OMERO_SESSION_DIR=/tmp/OMERO-test-integration/47
11:27:32 + OMERO_SESSION_DIR=/tmp/OMERO-test-integration/47
11:27:32 + export ICE_CONFIG=/home/omero/workspace/OMERO-test-integration/src/dist/etc/ice.config
11:27:32 + ICE_CONFIG=/home/omero/workspace/OMERO-test-integration/src/dist/etc/ice.config
11:27:32 + echo Running the integration tests with -Dtestng.useDefaultListeners=true
11:27:32 Running the integration tests with -Dtestng.useDefaultListeners=true
11:27:32 + /home/omero/workspace/OMERO-test-integration/src/build.py -f components/tools/OmeroWeb/build.xml integration -Dtestreports.dir=target/reports/integration
11:27:32 Buildfile: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb/build.xml
11:27:32 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb...
11:27:33 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb...
11:27:33
11:27:33 python-integration:
11:27:33 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb/target/reports/integration
11:27:40 ============================= test session starts ==============================
11:27:40 platform linux -- Python 3.11.13, pytest-9.1.1, pluggy-1.6.0 -- /home/omero/workspace/OMERO-test-integration/.venv3/bin/python3.11
11:27:40 cachedir: .pytest_cache
11:27:40 django: version: 5.2.16, settings: omeroweb.settings (from ini)
11:27:40 rootdir: /home/omero/workspace/OMERO-test-integration/src/components/tools
11:27:40 configfile: pytest.ini
11:27:40 plugins: mock-3.15.1, xdist-3.8.0, django-4.12.0
11:27:43 collecting ... collected 441 items
11:27:47 test/integration/test_annotate.py::TestMapAnnotations::test_annotate_map PASSED [ 0%]
11:27:51 test/integration/test_annotate.py::TestTagging::test_create_tag PASSED [ 0%]
11:27:53 test/integration/test_annotate.py::TestTagging::test_annotate_tag PASSED [ 0%]
11:27:57 test/integration/test_annotate.py::TestBatchAnnotate::test_batch_annotate_tag PASSED [ 0%]
11:28:00 test/integration/test_annotate.py::TestFileAnnotations::test_add_fileannotations_form PASSED [ 1%]
11:28:01 test/integration/test_annotate.py::TestFileAnnotations::test_batch_add_fileannotations[1] PASSED [ 1%]
11:28:02 test/integration/test_annotate.py::TestFileAnnotations::test_batch_add_fileannotations[2] PASSED [ 1%]
11:28:05 test/integration/test_api_containers.py::TestContainers::test_create_update_unsupported[method0-Plate] PASSED [ 1%]
11:28:06 test/integration/test_api_containers.py::TestContainers::test_create_update_unsupported[method0-Image] PASSED [ 2%]
11:28:07 test/integration/test_api_containers.py::TestContainers::test_create_update_unsupported[method0-Well] PASSED [ 2%]
11:28:08 test/integration/test_api_containers.py::TestContainers::test_create_update_unsupported[method0-Channel] PASSED [ 2%]
11:28:09 test/integration/test_api_containers.py::TestContainers::test_create_update_unsupported[method0-foo] PASSED [ 2%]
11:28:10 test/integration/test_api_containers.py::TestContainers::test_create_update_unsupported[method1-Plate] PASSED [ 2%]
11:28:11 test/integration/test_api_containers.py::TestContainers::test_create_update_unsupported[method1-Image] PASSED [ 3%]
11:28:12 test/integration/test_api_containers.py::TestContainers::test_create_update_unsupported[method1-Well] PASSED [ 3%]
11:28:13 test/integration/test_api_containers.py::TestContainers::test_create_update_unsupported[method1-Channel] PASSED [ 3%]
11:28:15 test/integration/test_api_containers.py::TestContainers::test_create_update_unsupported[method1-foo] PASSED [ 3%]
11:28:17 test/integration/test_api_containers.py::TestContainers::test_delete_unsupported[Plate] PASSED [ 4%]
11:28:19 test/integration/test_api_containers.py::TestContainers::test_delete_unsupported[Image] PASSED [ 4%]
11:28:20 test/integration/test_api_containers.py::TestContainers::test_delete_unsupported[Well] PASSED [ 4%]
11:28:20 test/integration/test_api_containers.py::TestContainers::test_container_crud[Project] PASSED [ 4%]
11:28:20 test/integration/test_api_containers.py::TestContainers::test_container_crud[Dataset] PASSED [ 4%]
11:28:21 test/integration/test_api_containers.py::TestContainers::test_container_crud[Screen] PASSED [ 5%]
11:28:26 test/integration/test_api_containers.py::TestContainers::test_datasets_plates[Dataset-True] PASSED [ 5%]
11:28:30 test/integration/test_api_containers.py::TestContainers::test_datasets_plates[Dataset-False] PASSED [ 5%]
11:28:34 test/integration/test_api_containers.py::TestContainers::test_datasets_plates[Plate-True] PASSED [ 5%]
11:28:38 test/integration/test_api_containers.py::TestContainers::test_datasets_plates[Plate-False] PASSED [ 6%]
11:28:40 test/integration/test_api_containers.py::TestContainers::test_screens PASSED [ 6%]
11:28:42 test/integration/test_api_containers.py::TestContainers::test_screen_plates_update PASSED [ 6%]
11:28:44 test/integration/test_api_containers.py::TestContainers::test_container_tags_update[dtype0] PASSED [ 6%]
11:28:45 test/integration/test_api_containers.py::TestContainers::test_container_tags_update[dtype1] PASSED [ 7%]
11:28:46 test/integration/test_api_containers.py::TestContainers::test_container_tags_update[dtype2] PASSED [ 7%]
11:28:47 test/integration/test_api_containers.py::TestContainers::test_spw_urls PASSED [ 7%]
11:28:48 test/integration/test_api_containers.py::TestContainers::test_spw_parent_urls PASSED [ 7%]
11:28:51 test/integration/test_api_containers.py::TestContainers::test_pdi_urls PASSED [ 7%]
11:28:54 test/integration/test_api_containers.py::TestContainers::test_pdi_parent_urls PASSED [ 8%]
11:28:56 test/integration/test_api_errors.py::TestErrors::test_save_post_no_id PASSED [ 8%]
11:28:56 test/integration/test_api_errors.py::TestErrors::test_save_put_id PASSED [ 8%]
11:28:56 test/integration/test_api_errors.py::TestErrors::test_marshal_type PASSED [ 8%]
11:28:56 test/integration/test_api_errors.py::TestErrors::test_invalid_parameter PASSED [ 9%]
11:28:56 test/integration/test_api_errors.py::TestErrors::test_marshal_validation PASSED [ 9%]
11:28:57 test/integration/test_api_errors.py::TestErrors::test_security_violation PASSED [ 9%]
11:28:58 test/integration/test_api_errors.py::TestErrors::test_validation_exception PASSED [ 9%]
11:28:58 test/integration/test_api_errors.py::TestErrors::test_project_validation PASSED [ 9%]
11:29:01 test/integration/test_api_experimenters_groups.py::TestExperimenters::test_create_update_unsupported[method0-Experimenter] PASSED [ 10%]
11:29:02 test/integration/test_api_experimenters_groups.py::TestExperimenters::test_create_update_unsupported[method0-ExperimenterGroup] PASSED [ 10%]
11:29:03 test/integration/test_api_experimenters_groups.py::TestExperimenters::test_create_update_unsupported[method1-Experimenter] PASSED [ 10%]
11:29:04 test/integration/test_api_experimenters_groups.py::TestExperimenters::test_create_update_unsupported[method1-ExperimenterGroup] PASSED [ 10%]
11:29:05 test/integration/test_api_experimenters_groups.py::TestExperimenters::test_delete_unsupported[Experimenter] PASSED [ 11%]
11:29:06 test/integration/test_api_experimenters_groups.py::TestExperimenters::test_delete_unsupported[ExperimenterGroup] PASSED [ 11%]
11:29:07 test/integration/test_api_experimenters_groups.py::TestExperimenters::test_experimenters_groups PASSED [ 11%]
11:29:08 test/integration/test_api_experimenters_groups.py::TestExperimenters::test_groups_experimenters PASSED [ 11%]
11:29:09 test/integration/test_api_experimenters_groups.py::TestExperimenters::test_filter_groups PASSED [ 12%]
11:29:10 test/integration/test_api_experimenters_groups.py::TestExperimenters::test_filter_experimenters PASSED [ 12%]
11:29:14 test/integration/test_api_images.py::TestImages::test_dataset_images PASSED [ 12%]
11:29:16 test/integration/test_api_login.py::TestLogin::test_versions PASSED [ 12%]
11:29:16 test/integration/test_api_login.py::TestLogin::test_base_url PASSED [ 12%]
11:29:16 test/integration/test_api_login.py::TestLogin::test_base_url_versions_404 PASSED [ 13%]
11:29:16 test/integration/test_api_login.py::TestLogin::test_login_get PASSED [ 13%]
11:29:16 test/integration/test_api_login.py::TestLogin::test_login_csrf_cookie_not_set PASSED [ 13%]
11:29:16 test/integration/test_api_login.py::TestLogin::test_login_missing_csrf_token PASSED [ 13%]
11:29:16 test/integration/test_api_login.py::TestLogin::test_login_empty_csrf_token PASSED [ 14%]
11:29:16 test/integration/test_api_login.py::TestLogin::test_login_invalid_csrf_token PASSED [ 14%]
11:29:16 test/integration/test_api_login.py::TestLogin::test_login_errors[multipart/form-data; boundary=BoUnDaRyStRiNg-credentials0] PASSED [ 14%]
11:29:16 test/integration/test_api_login.py::TestLogin::test_login_errors[multipart/form-data; boundary=BoUnDaRyStRiNg-credentials1] PASSED [ 14%]
11:29:16 test/integration/test_api_login.py::TestLogin::test_login_errors[multipart/form-data; boundary=BoUnDaRyStRiNg-credentials2] PASSED [ 14%]
11:29:16 test/integration/test_api_login.py::TestLogin::test_login_errors[multipart/form-data; boundary=BoUnDaRyStRiNg-credentials3] PASSED [ 15%]
11:29:16 test/integration/test_api_login.py::TestLogin::test_login_errors[multipart/form-data; boundary=BoUnDaRyStRiNg-credentials4] PASSED [ 15%]
11:29:16 test/integration/test_api_login.py::TestLogin::test_login_errors[application/json-credentials0] PASSED [ 15%]
11:29:16 test/integration/test_api_login.py::TestLogin::test_login_errors[application/json-credentials1] PASSED [ 15%]
11:29:16 test/integration/test_api_login.py::TestLogin::test_login_errors[application/json-credentials2] PASSED [ 16%]
11:29:16 test/integration/test_api_login.py::TestLogin::test_login_errors[application/json-credentials3] PASSED [ 16%]
11:29:16 test/integration/test_api_login.py::TestLogin::test_login_errors[application/json-credentials4] PASSED [ 16%]
11:29:17 test/integration/test_api_login.py::TestLogin::test_login_example[multipart/form-data; boundary=BoUnDaRyStRiNg] PASSED [ 16%]
11:29:18 test/integration/test_api_login.py::TestLogin::test_login_example[application/json] PASSED [ 17%]
11:29:20 test/integration/test_api_projects.py::TestProjects::test_marshal_projects_not_logged_in PASSED [ 17%]
11:29:21 test/integration/test_api_projects.py::TestProjects::test_marshal_projects_no_results PASSED [ 17%]
11:29:22 test/integration/test_api_projects.py::TestProjects::test_marshal_projects_user PASSED [ 17%]
11:29:23 test/integration/test_api_projects.py::TestProjects::test_marshal_projects_another_user PASSED [ 17%]
11:29:24 test/integration/test_api_projects.py::TestProjects::test_marshal_projects_another_group PASSED [ 18%]
11:29:25 test/integration/test_api_projects.py::TestProjects::test_marshal_projects_all_groups PASSED [ 18%]
11:29:26 test/integration/test_api_projects.py::TestProjects::test_marshal_projects_all_users PASSED [ 18%]
11:29:27 test/integration/test_api_projects.py::TestProjects::test_marshal_projects_pagination PASSED [ 18%]
11:29:28 test/integration/test_api_projects.py::TestProjects::test_marshal_projects_params PASSED [ 19%]
11:29:28 test/integration/test_api_projects.py::TestProjects::test_project_create_read PASSED [ 19%]
11:29:29 test/integration/test_api_projects.py::TestProjects::test_project_create_other_group PASSED [ 19%]
11:29:30 test/integration/test_api_projects.py::TestProjects::test_project_update PASSED [ 19%]
11:29:31 test/integration/test_api_projects.py::TestProjects::test_project_datasets_update[Project] PASSED [ 19%]
11:29:32 test/integration/test_api_projects.py::TestProjects::test_project_datasets_update[Dataset] PASSED [ 20%]
11:29:33 test/integration/test_api_projects.py::TestProjects::test_project_delete PASSED [ 20%]
11:29:36 test/integration/test_api_rois.py::TestContainers::test_image_rois PASSED [ 20%]
11:29:39 test/integration/test_api_rois.py::TestContainers::test_roi_delete PASSED [ 20%]
11:29:40 test/integration/test_api_rois.py::TestContainers::test_shapes PASSED [ 21%]
11:29:45 test/integration/test_api_wells.py::TestWells::test_plate_wells PASSED [ 21%]
11:29:48 test/integration/test_api_wells.py::TestWells::test_plate_index_wells PASSED [ 21%]
11:29:49 test/integration/test_api_wells.py::TestWells::test_well PASSED [ 21%]
11:29:54 test/integration/test_chgrp.py::TestChgrp::test_load_chgrp_groups[user] PASSED [ 21%]
11:29:54 test/integration/test_chgrp.py::TestChgrp::test_load_chgrp_groups[admin] PASSED [ 22%]
11:29:56 test/integration/test_chgrp.py::TestChgrp::test_chgrp_dry_run[user] PASSED [ 22%]
11:29:57 test/integration/test_chgrp.py::TestChgrp::test_chgrp_new_container[user] FAILED [ 22%]
11:29:57 test/integration/test_chgrp.py::TestChgrp::test_chgrp_new_container[admin] PASSED [ 22%]
11:29:58 test/integration/test_chgrp.py::TestChgrp::test_chgrp_old_container[user] PASSED [ 23%]
11:29:59 test/integration/test_chgrp.py::TestChgrp::test_chgrp_old_container[admin] PASSED [ 23%]
11:30:03 test/integration/test_chown.py::TestChown::test_chown_dry_run[admin] PASSED [ 23%]
11:30:03 test/integration/test_config.py::test_flattenProperties PASSED [ 23%]
11:30:04 test/integration/test_config.py::TestConfig::testDefaultConfig PASSED [ 24%]
11:30:04 test/integration/test_config.py::TestConfig::testDefaultConfigConversion PASSED [ 24%]
11:30:04 test/integration/test_config.py::TestConfig::testUpgradeDropdownMenuConfig[foo-colleagues.label] PASSED [ 24%]
11:30:04 test/integration/test_config.py::TestConfig::testUpgradeDropdownMenuConfig[foo-leaders.label] PASSED [ 24%]
11:30:04 test/integration/test_config.py::TestConfig::testUpgradeDropdownMenuConfig[foo-everyone.label] PASSED [ 24%]
11:30:06 test/integration/test_containers.py::TestContainers::test_add_and_rename_container PASSED [ 25%]
11:30:07 test/integration/test_containers.py::TestContainers::test_add_owned_container PASSED [ 25%]
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11:30:08 test/integration/test_containers.py::TestContainers::test_edit_share PASSED [ 25%]
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11:30:09 test/integration/test_csrf.py::TestCsrf::test_forgot_password PASSED [ 26%]
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11:30:10 test/integration/test_csrf.py::TestCsrf::test_attach_file PASSED [ 26%]
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11:30:11 test/integration/test_csrf.py::TestCsrf::test_copy_past_rendering_settings PASSED [ 27%]
11:30:11 test/integration/test_csrf.py::TestCsrf::test_reset_rendering_settings PASSED [ 27%]
11:30:11 test/integration/test_csrf.py::TestCsrf::test_apply_owners_rendering_settings PASSED [ 27%]
11:30:12 test/integration/test_csrf.py::TestCsrf::test_ome_tiff_script PASSED [ 28%]
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11:30:13 test/integration/test_csrf.py::TestCsrf::test_myaccount PASSED [ 28%]
11:30:14 test/integration/test_csrf.py::TestCsrf::test_avatar PASSED [ 28%]
11:30:14 test/integration/test_csrf.py::TestCsrf::test_create_group PASSED [ 29%]
11:30:14 test/integration/test_csrf.py::TestCsrf::test_create_user PASSED [ 29%]
11:30:14 test/integration/test_csrf.py::TestCsrf::test_edit_group PASSED [ 29%]
11:30:15 test/integration/test_csrf.py::TestCsrf::test_edit_user PASSED [ 29%]
11:30:15 test/integration/test_csrf.py::TestCsrf::test_edit_group_by_owner PASSED [ 29%]
11:30:15 test/integration/test_csrf.py::TestCsrf::test_change_password PASSED [ 30%]
11:30:16 test/integration/test_csrf.py::TestCsrf::test_su PASSED [ 30%]
11:30:17 test/integration/test_decorators.py::TestShow::test_conn_cleanup PASSED [ 30%]
11:30:20 test/integration/test_download.py::TestDownload::test_spw_download PASSED [ 30%]
11:30:27 test/integration/test_download.py::TestDownload::test_orphaned_image_direct_download PASSED [ 31%]
11:30:32 test/integration/test_download.py::TestDownload::test_orphaned_image_download PASSED [ 31%]
11:30:37 test/integration/test_download.py::TestDownload::test_image_in_dataset_download PASSED [ 31%]
11:30:42 test/integration/test_download.py::TestDownload::test_image_in_dataset_in_project_download PASSED [ 31%]
11:30:42 test/integration/test_download.py::TestDownload::test_well_download PASSED [ 31%]
11:30:46 test/integration/test_download.py::TestDownload::test_attachment_download PASSED [ 32%]
11:30:48 test/integration/test_download.py::TestDownloadAs::test_download_image_as[jpeg] PASSED [ 32%]
11:30:49 test/integration/test_download.py::TestDownloadAs::test_download_image_as[png] PASSED [ 32%]
11:30:49 test/integration/test_download.py::TestDownloadAs::test_download_image_as[tif] PASSED [ 32%]
11:30:50 test/integration/test_download.py::TestDownloadAs::test_download_images_as_zip[jpeg] PASSED [ 33%]
11:30:51 test/integration/test_download.py::TestDownloadAs::test_download_images_as_zip[png] PASSED [ 33%]
11:30:51 test/integration/test_download.py::TestDownloadAs::test_download_images_as_zip[tif] PASSED [ 33%]
11:30:55 test/integration/test_groups_users.py::TestGroupsUsers::test_group_users_menu PASSED [ 33%]
11:30:56 test/integration/test_histogram.py::TestHistogram::test_histogram_bin_count[None] PASSED [ 34%]
11:30:57 test/integration/test_histogram.py::TestHistogram::test_histogram_bin_count[10] PASSED [ 34%]
11:30:59 test/integration/test_history.py::TestHistory::test_history PASSED [ 34%]
11:30:59 test/integration/test_history.py::TestHistory::test_calendar_default PASSED [ 34%]
11:30:59 test/integration/test_history.py::TestHistory::test_calendar_month PASSED [ 34%]
11:31:02 test/integration/test_links.py::TestLinks::test_link_project_datasets PASSED [ 35%]
11:31:02 test/integration/test_links.py::TestLinks::test_link_datasets_images PASSED [ 35%]
11:31:02 test/integration/test_links.py::TestLinks::test_link_unlink_tagset_tags PASSED [ 35%]
11:31:03 test/integration/test_links.py::TestLinks::test_unlink_screen_plate PASSED [ 35%]
11:31:05 test/integration/test_login.py::TestLogin::test_login_errors[credentials0] PASSED [ 36%]
11:31:05 test/integration/test_login.py::TestLogin::test_login_errors[credentials1] PASSED [ 36%]
11:31:05 test/integration/test_login.py::TestLogin::test_login_errors[credentials2] PASSED [ 36%]
11:31:05 test/integration/test_login.py::TestLogin::test_login_errors[credentials3] PASSED [ 36%]
11:31:05 test/integration/test_login.py::TestLogin::test_get_login_page PASSED [ 36%]
11:31:06 test/integration/test_login.py::TestLogin::test_login_redirect[] PASSED [ 37%]
11:31:07 test/integration/test_login.py::TestLogin::test_login_redirect[/webclient/usertags/] PASSED [ 37%]
11:31:08 test/integration/test_login.py::TestLogin::test_login_view PASSED [ 37%]
11:31:17 test/integration/test_marshal.py::TestImgDetail::test_image_detail PASSED [ 37%]
11:31:22 test/integration/test_marshal.py::TestImgDetail::test_pyramidal_image PASSED [ 38%]
11:31:25 test/integration/test_metadata.py::TestCoreMetadata::test_pixel_size_units PASSED [ 38%]
11:31:25 test/integration/test_metadata.py::TestCoreMetadata::test_none_pixel_size PASSED [ 38%]
11:31:27 test/integration/test_metadata.py::TestBulkAnnotations::test_nsbulkannotations_file[True] PASSED [ 38%]
11:31:27 test/integration/test_metadata.py::TestBulkAnnotations::test_nsbulkannotations_file[False] PASSED [ 39%]
11:31:27 test/integration/test_metadata.py::TestBulkAnnotations::test_nsbulkannotations_not_file PASSED [ 39%]
11:31:30 test/integration/test_plategrid.py::TestPlateGrid::test_get_plate_grid_metadata[shrink] PASSED [ 39%]
11:31:31 test/integration/test_plategrid.py::TestPlateGrid::test_get_plate_grid_metadata[trim] PASSED [ 39%]
11:31:32 test/integration/test_plategrid.py::TestPlateGrid::test_get_plate_grid_metadata[expand] PASSED [ 39%]
11:31:33 test/integration/test_plategrid.py::TestPlateGrid::test_well_images PASSED [ 40%]
11:31:33 test/integration/test_plategrid.py::TestPlateGrid::test_instantiation PASSED [ 40%]
11:31:33 test/integration/test_plategrid.py::TestPlateGrid::test_metadata_grid_size PASSED [ 40%]
11:31:34 test/integration/test_plategrid.py::TestPlateGrid::test_metadata_thumbnail_url PASSED [ 40%]
11:31:34 test/integration/test_plategrid.py::TestPlateGrid::test_full_grid PASSED [ 41%]
11:31:34 test/integration/test_plategrid.py::TestPlateGrid::test_acquisition_date PASSED [ 41%]
11:31:34 test/integration/test_plategrid.py::TestPlateGrid::test_creation_date PASSED [ 41%]
11:31:35 test/integration/test_plategrid.py::TestPlateGrid::test_description PASSED [ 41%]
11:31:36 test/integration/test_plategrid.py::TestScreenPlateTables::test_get_plate_table PASSED [ 41%]
11:31:39 test/integration/test_rendering.py::TestRendering::test_copy_past_rendering_settings_from_image PASSED [ 42%]
11:31:41 test/integration/test_rendering.py::TestRendering::test_copy_past_rendering_settings_from_url PASSED [ 42%]
11:31:41 test/integration/test_rendering.py::TestRendering::test_all_rendering_defs PASSED [ 42%]
11:31:46 test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_incomplete_request PASSED [ 42%]
11:31:48 test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_malformed_tile_argument PASSED [ 43%]
11:31:50 test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_malformed_region_argument PASSED [ 43%]
11:31:58 test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_tile_params PASSED [ 43%]
11:32:00 test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_tile_params_large_image PASSED [ 43%]
11:32:02 test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_tile_params_negative_resolution PASSED [ 43%]
11:32:04 test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_tile_params_invalid_resolution PASSED [ 44%]
11:32:12 test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_tile_params_big_image PASSED [ 44%]
11:32:19 test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_region_params PASSED [ 44%]
11:32:27 test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_region_params_big_image PASSED [ 44%]
11:32:34 test/integration/test_rendering.py::TestRenderImageRegion::test_render_birds_eye_view_big_image PASSED [ 45%]
11:32:41 test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_big_image_resolution PASSED [ 45%]
11:32:44 test/integration/test_scripts.py::TestScripts::test_script_ui_defaults PASSED [ 45%]
11:32:48 test/integration/test_scripts.py::TestScripts::test_script_inputs_outputs[inputs0] PASSED [ 45%]
11:32:51 test/integration/test_scripts.py::TestScripts::test_script_inputs_outputs[inputs1] PASSED [ 46%]
11:32:55 test/integration/test_scripts.py::TestScripts::test_script_inputs_outputs[inputs2] PASSED [ 46%]
11:32:58 test/integration/test_scripts.py::TestFigureScripts::test_figure_script_dialog[SplitView] PASSED [ 46%]
11:32:58 test/integration/test_scripts.py::TestFigureScripts::test_figure_script_dialog[Thumbnail] PASSED [ 46%]
11:32:59 test/integration/test_scripts.py::TestFigureScripts::test_figure_script_dialog[MakeMovie] PASSED [ 46%]
11:33:00 test/integration/test_show.py::TestShow::test_empty_path PASSED [ 47%]
11:33:00 test/integration/test_show.py::TestShow::test_project_legacy_path PASSED [ 47%]
11:33:00 test/integration/test_show.py::TestShow::test_projects_legacy_show PASSED [ 47%]
11:33:00 test/integration/test_show.py::TestShow::test_project_dataset_legacy_path PASSED [ 47%]
11:33:00 test/integration/test_show.py::TestShow::test_project_dataset_image_legacy_path PASSED [ 48%]
11:33:00 test/integration/test_show.py::TestShow::test_tag_redirect[1] PASSED [ 48%]
11:33:00 test/integration/test_show.py::TestShow::test_tag_redirect[2] PASSED [ 48%]
11:33:00 test/integration/test_show.py::TestShow::test_tagset_redirect[1] PASSED [ 48%]
11:33:00 test/integration/test_show.py::TestShow::test_tagset_redirect[2] PASSED [ 48%]
11:33:00 test/integration/test_show.py::TestShow::test_tag_legacy_path[1] PASSED [ 49%]
11:33:00 test/integration/test_show.py::TestShow::test_tag_legacy_path[2] PASSED [ 49%]
11:33:00 test/integration/test_show.py::TestShow::test_tagset_tag_legacy_path PASSED [ 49%]
11:33:01 test/integration/test_show.py::TestShow::test_image_legacy_path PASSED [ 49%]
11:33:01 test/integration/test_show.py::TestShow::test_screen_legacy_path PASSED [ 50%]
11:33:01 test/integration/test_show.py::TestShow::test_screen_plate_legacy_path PASSED [ 50%]
11:33:01 test/integration/test_show.py::TestShow::test_screen_plate_well_show PASSED [ 50%]
11:33:01 test/integration/test_show.py::TestShow::test_screen_plate_run_well_show[0] PASSED [ 50%]
11:33:01 test/integration/test_show.py::TestShow::test_screen_plate_run_well_show[1] PASSED [ 51%]
11:33:01 test/integration/test_show.py::TestShow::test_project_dataset_image_show PASSED [ 51%]
11:33:01 test/integration/test_show.py::TestShow::test_project_dataset_image_roi_show PASSED [ 51%]
11:33:01 test/integration/test_show.py::TestShow::test_project_by_id PASSED [ 51%]
11:33:01 test/integration/test_show.py::TestShow::test_project_by_name PASSED [ 51%]
11:33:01 test/integration/test_show.py::TestShow::test_tag_by_value[1] PASSED [ 52%]
11:33:01 test/integration/test_show.py::TestShow::test_tag_by_value[2] PASSED [ 52%]
11:33:01 test/integration/test_show.py::TestShow::test_tagset_tag_by_id PASSED [ 52%]
11:33:01 test/integration/test_show.py::TestShow::test_multiple_well_by_id[plate.name=%(plate_name)s|well.name=%(well_name)s-A10] PASSED [ 52%]
11:33:01 test/integration/test_show.py::TestShow::test_multiple_well_by_id[plate.name=%(plate_name)s|well.name=%(well_name)s-1J] PASSED [ 53%]
11:33:01 test/integration/test_show.py::TestShow::test_screen_plate_run_well_by_name[plate.name=%(plate_name)s|well.name=%(well_name)s-A10] PASSED [ 53%]
11:33:01 test/integration/test_show.py::TestShow::test_screen_plate_run_well_by_name[plate.name=%(plate_name)s|well.name=%(well_name)s-1J] PASSED [ 53%]
11:33:01 test/integration/test_show.py::TestShow::test_multiple_well_by_id[run=%(plate_acquisition_id)s|well.name=%(well_name)s-A10] PASSED [ 53%]
11:33:01 test/integration/test_show.py::TestShow::test_multiple_well_by_id[run=%(plate_acquisition_id)s|well.name=%(well_name)s-1J] PASSED [ 53%]
11:33:01 test/integration/test_show.py::TestShow::test_screen_plate_run_well_by_name[run=%(plate_acquisition_id)s|well.name=%(well_name)s-A10] PASSED [ 54%]
11:33:02 test/integration/test_show.py::TestShow::test_screen_plate_run_well_by_name[run=%(plate_acquisition_id)s|well.name=%(well_name)s-1J] PASSED [ 54%]
11:33:02 test/integration/test_show.py::TestShow::test_well_by_name[A10] PASSED [ 54%]
11:33:02 test/integration/test_show.py::TestShow::test_well_by_name[1J] PASSED [ 54%]
11:33:02 test/integration/test_show.py::TestShow::test_screen_plate_run_illegal_run PASSED [ 55%]
11:33:02 test/integration/test_show.py::TestShow::test_path_to_no_objects PASSED [ 55%]
11:33:02 test/integration/test_show.py::TestShow::test_project_dataset_image PASSED [ 55%]
11:33:02 test/integration/test_show.py::TestShow::test_project_dataset_images_pagination PASSED [ 55%]
11:33:02 test/integration/test_show.py::TestShow::test_orphaned_pagination PASSED [ 56%]
11:33:02 test/integration/test_show.py::TestShow::test_get_image_ids_dataset PASSED [ 56%]
11:33:02 test/integration/test_show.py::TestShow::test_image PASSED [ 56%]
11:33:02 test/integration/test_show.py::TestShow::test_roi PASSED [ 56%]
11:33:02 test/integration/test_show.py::TestShow::test_shape PASSED [ 56%]
11:33:02 test/integration/test_show.py::TestShow::test_well_image_shape PASSED [ 57%]
11:33:02 test/integration/test_show.py::TestShow::test_image_orphan PASSED [ 57%]
11:33:02 test/integration/test_show.py::TestShow::test_image_multi_link PASSED [ 57%]
11:33:02 test/integration/test_show.py::TestShow::test_image_multi_link_restrict_dataset PASSED [ 57%]
11:33:02 test/integration/test_show.py::TestShow::test_image_multi_link_restrict_dataset_project PASSED [ 58%]
11:33:02 test/integration/test_show.py::TestShow::test_image_multi_link_restrict_project PASSED [ 58%]
11:33:02 test/integration/test_show.py::TestShow::test_dataset PASSED [ 58%]
11:33:03 test/integration/test_show.py::TestShow::test_dataset_multi_link PASSED [ 58%]
11:33:03 test/integration/test_show.py::TestShow::test_dataset_multi_link_restrict_project PASSED [ 58%]
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11:35:32 =================================== FAILURES ===================================
11:35:32 ___________________ TestChgrp.test_chgrp_new_container[user] ___________________
11:35:32 self = <test_chgrp.TestChgrp object at 0x7f5f3ab6c0d0>
11:35:32 dataset = object #0 (::omero::model::Dataset)
11:35:32 {
11:35:32 _id = object #1 (::omero::RLong)
11:35:32 {
11:35:32 _val = 61
11:35:32 }
11:35:32 _details ...bject #54 (::omero::RString)
11:35:32 {
11:35:32 _val = b9320ddb-3a5d-46a4-9106-b0beba27caaf
11:35:32 }
11:35:32 _description = <nil>
11:35:32 }
11:35:32 credentials = 'user'
11:35:32 @pytest.mark.parametrize("credentials", ['user', 'admin'])
11:35:32 def test_chgrp_new_container(self, dataset, credentials):
11:35:32 """
11:35:32 Performs a chgrp POST, polls the activities json till done,
11:35:32 then checks that Dataset has moved to new group and has new
11:35:32 Project as parent.
11:35:32 """
11:35:32 django_client = self.get_django_client(credentials)
11:35:32 request_url = reverse('chgrp')
11:35:32 projectName = "chgrp-project%s" % (self.uuid())
11:35:32 data = {
11:35:32 "group_id": self.group2.id.val,
11:35:32 "Dataset": dataset.id.val,
11:35:32 "new_container_name": projectName,
11:35:32 "new_container_type": "project",
11:35:32 }
11:35:32 rsp = post(django_client, request_url, data)
11:35:32 data = json.loads(rsp.content)
11:35:32 expected = {"update": {"childless": {"project": [],
11:35:32 "orphaned": False,
11:35:32 "dataset": []},
11:35:32 "remove": {"project": [],
11:35:32 "plate": [],
11:35:32 "screen": [],
11:35:32 "image": [],
11:35:32 "dataset": [dataset.id.val]}}}
11:35:32 > assert data == expected
11:35:32 E AssertionError: assert {'update': {'...ned': False}}} == {'update': {'...e': [], ...}}}
11:35:32 E
11:35:32 E Differing items:
11:35:32 E {'update': {'remove': {'project': [], 'dataset': [61], 'screen': [], 'plate': [], ...}, 'childless': {'project': [58], 'dataset': [], 'orphaned': False}}} != {'update': {'childless': {'project': [], 'orphaned': False, 'dataset': []}, 'remove': {'project': [], 'plate': [], 'screen': [], 'image': [], ...}}}
11:35:32 E
11:35:32 E Full diff:
11:35:32 E {
11:35:32 E 'update': {
11:35:32 E - 'childless': {
11:35:32 E - 'project': [],
11:35:32 E - 'orphaned': False,
11:35:32 E - 'dataset': [],
11:35:32 E - },
11:35:32 E 'remove': {
11:35:32 E 'project': [],
11:35:32 E - 'plate': [],
11:35:32 E - 'screen': [],
11:35:32 E - 'image': [],
11:35:32 E 'dataset': [
11:35:32 E 61,
11:35:32 E ],
11:35:32 E + 'screen': [],
11:35:32 E + 'plate': [],
11:35:32 E + 'image': [],
11:35:32 E + },
11:35:32 E + 'childless': {
11:35:32 E + 'project': [
11:35:32 E + 58,
11:35:32 E + ],
11:35:32 E + 'dataset': [],
11:35:32 E + 'orphaned': False,
11:35:32 E },
11:35:32 E },
11:35:32 E }
11:35:32 test/integration/test_chgrp.py:224: AssertionError
11:35:32 ------------------------------ Captured log call -------------------------------
11:35:32 WARNING django.security.csrf:log.py:253 Forbidden (CSRF token missing.): /webclient/chgrp/
11:35:32 INFO omero.gateway:__init__.py:2307 created connection (uuid=017babeb-3da8-438c-b9ec-a2f4baf6f0d4)
11:35:32 INFO omero.gateway:__init__.py:2009 closed connection (uuid=None)
11:35:32 =============================== warnings summary ===============================
11:35:32 OmeroWeb/test/integration/test_annotate.py: 15 warnings
11:35:32 OmeroWeb/test/integration/test_api_containers.py: 28 warnings
11:35:32 OmeroWeb/test/integration/test_api_errors.py: 4 warnings
11:35:32 OmeroWeb/test/integration/test_api_experimenters_groups.py: 12 warnings
11:35:32 OmeroWeb/test/integration/test_api_images.py: 3 warnings
11:35:32 OmeroWeb/test/integration/test_api_login.py: 4 warnings
11:35:32 OmeroWeb/test/integration/test_api_projects.py: 15 warnings
11:35:32 OmeroWeb/test/integration/test_api_rois.py: 5 warnings
11:35:32 OmeroWeb/test/integration/test_api_wells.py: 5 warnings
11:35:32 OmeroWeb/test/integration/test_chgrp.py: 3 warnings
11:35:32 OmeroWeb/test/integration/test_chown.py: 3 warnings
11:35:32 OmeroWeb/test/integration/test_containers.py: 2 warnings
11:35:32 OmeroWeb/test/integration/test_csrf.py: 2 warnings
11:35:32 OmeroWeb/test/integration/test_decorators.py: 2 warnings
11:35:32 OmeroWeb/test/integration/test_download.py: 4 warnings
11:35:32 OmeroWeb/test/integration/test_groups_users.py: 3 warnings
11:35:32 OmeroWeb/test/integration/test_histogram.py: 2 warnings
11:35:32 OmeroWeb/test/integration/test_history.py: 2 warnings
11:35:32 OmeroWeb/test/integration/test_links.py: 2 warnings
11:35:32 OmeroWeb/test/integration/test_login.py: 5 warnings
11:35:32 OmeroWeb/test/integration/test_marshal.py: 2 warnings
11:35:32 OmeroWeb/test/integration/test_metadata.py: 4 warnings
11:35:32 OmeroWeb/test/integration/test_plategrid.py: 7 warnings
11:35:32 OmeroWeb/test/integration/test_rendering.py: 4 warnings
11:35:32 OmeroWeb/test/integration/test_scripts.py: 4 warnings
11:35:32 OmeroWeb/test/integration/test_show.py: 2 warnings
11:35:32 OmeroWeb/test/integration/test_table.py: 27 warnings
11:35:32 OmeroWeb/test/integration/test_tags.py: 2 warnings
11:35:32 OmeroWeb/test/integration/test_thumbnails.py: 4 warnings
11:35:32 OmeroWeb/test/integration/test_webadmin.py: 18 warnings
11:35:32 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.11/site-packages/omero/util/upgrade_check.py:142: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
11:35:32 self.log.warn("UPGRADE AVAILABLE:" + result)
11:35:32 OmeroWeb/test/integration/test_annotate.py: 15 warnings
11:35:32 OmeroWeb/test/integration/test_api_containers.py: 28 warnings
11:35:32 OmeroWeb/test/integration/test_api_errors.py: 4 warnings
11:35:32 OmeroWeb/test/integration/test_api_experimenters_groups.py: 12 warnings
11:35:32 OmeroWeb/test/integration/test_api_images.py: 3 warnings
11:35:32 OmeroWeb/test/integration/test_api_login.py: 4 warnings
11:35:32 OmeroWeb/test/integration/test_api_projects.py: 15 warnings
11:35:32 OmeroWeb/test/integration/test_api_rois.py: 5 warnings
11:35:32 OmeroWeb/test/integration/test_api_wells.py: 5 warnings
11:35:32 OmeroWeb/test/integration/test_chgrp.py: 3 warnings
11:35:32 OmeroWeb/test/integration/test_chown.py: 3 warnings
11:35:32 OmeroWeb/test/integration/test_containers.py: 2 warnings
11:35:32 OmeroWeb/test/integration/test_csrf.py: 2 warnings
11:35:32 OmeroWeb/test/integration/test_decorators.py: 2 warnings
11:35:32 OmeroWeb/test/integration/test_download.py: 4 warnings
11:35:32 OmeroWeb/test/integration/test_groups_users.py: 3 warnings
11:35:32 OmeroWeb/test/integration/test_histogram.py: 2 warnings
11:35:32 OmeroWeb/test/integration/test_history.py: 2 warnings
11:35:32 OmeroWeb/test/integration/test_links.py: 2 warnings
11:35:32 OmeroWeb/test/integration/test_login.py: 5 warnings
11:35:32 OmeroWeb/test/integration/test_marshal.py: 2 warnings
11:35:32 OmeroWeb/test/integration/test_metadata.py: 4 warnings
11:35:32 OmeroWeb/test/integration/test_plategrid.py: 7 warnings
11:35:32 OmeroWeb/test/integration/test_rendering.py: 4 warnings
11:35:32 OmeroWeb/test/integration/test_scripts.py: 4 warnings
11:35:32 OmeroWeb/test/integration/test_show.py: 2 warnings
11:35:32 OmeroWeb/test/integration/test_table.py: 27 warnings
11:35:32 OmeroWeb/test/integration/test_tags.py: 2 warnings
11:35:32 OmeroWeb/test/integration/test_thumbnails.py: 4 warnings
11:35:32 OmeroWeb/test/integration/test_webadmin.py: 18 warnings
11:35:32 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.11/site-packages/omeroweb/webadmin/webadmin_utils.py:26: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
11:35:32 logger.warn(
11:35:32 OmeroWeb/test/integration/test_annotate.py: 4 warnings
11:35:32 OmeroWeb/test/integration/test_api_containers.py: 3 warnings
11:35:32 OmeroWeb/test/integration/test_api_projects.py: 1 warning
11:35:32 OmeroWeb/test/integration/test_api_rois.py: 3 warnings
11:35:32 OmeroWeb/test/integration/test_containers.py: 1 warning
11:35:32 OmeroWeb/test/integration/test_csrf.py: 1 warning
11:35:32 OmeroWeb/test/integration/test_links.py: 2 warnings
11:35:32 OmeroWeb/test/integration/test_show.py: 1 warning
11:35:32 OmeroWeb/test/integration/test_tags.py: 11 warnings
11:35:32 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.11/site-packages/omero/callbacks.py:270: DeprecationWarning: isSet() is deprecated, use is_set() instead
11:35:32 return self.event.isSet()
11:35:33 OmeroWeb/test/integration/test_api_errors.py::TestErrors::test_marshal_type
11:35:33 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.11/site-packages/omero_marshal/__init__.py:44: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
11:35:33 logger.warn('Requested unknown decoder %s' % t, exc_info=True)
11:35:33 OmeroWeb/test/integration/test_api_errors.py::TestErrors::test_marshal_validation
11:35:33 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.11/site-packages/omero_marshal/__init__.py:97: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
11:35:33 logger.warn('Requested unknown decoder %s' % t, exc_info=True)
11:35:33 OmeroWeb/test/integration/test_api_errors.py::TestErrors::test_security_violation
11:35:33 OmeroWeb/test/integration/test_api_errors.py::TestErrors::test_validation_exception
11:35:33 OmeroWeb/test/integration/test_api_errors.py::TestErrors::test_project_validation
11:35:33 OmeroWeb/test/integration/test_api_projects.py::TestProjects::test_project_delete
11:35:33 OmeroWeb/test/integration/test_api_rois.py::TestContainers::test_roi_delete
11:35:33 OmeroWeb/test/integration/test_links.py::TestLinks::test_link_datasets_images
11:35:33 OmeroWeb/test/integration/test_links.py::TestLinks::test_link_datasets_images
11:35:33 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.11/site-packages/omero/gateway/__init__.py:4855: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead
11:35:33 logger.warn("%s on %s to <%s> %s(%r, %r)",
11:35:33 OmeroWeb/test/integration/test_metadata.py::TestBulkAnnotations::test_nsbulkannotations_file[True]
11:35:33 OmeroWeb/test/integration/test_metadata.py::TestBulkAnnotations::test_nsbulkannotations_file[False]
11:35:33 OmeroWeb/test/integration/test_metadata.py::TestBulkAnnotations::test_nsbulkannotations_not_file
11:35:33 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.11/site-packages/omeroweb/testlib/__init__.py:479: DeprecationWarning: This method is deprecated as of OMERO 5.4.0. Use get
11:35:33 warnings.warn(
11:35:33 OmeroWeb/test/integration/test_rendering.py::TestRendering::test_copy_past_rendering_settings_from_url
11:35:33 OmeroWeb/test/integration/test_rendering.py::TestRendering::test_copy_past_rendering_settings_from_url
11:35:33 OmeroWeb/test/integration/test_rendering.py::TestRendering::test_copy_past_rendering_settings_from_url
11:35:33 OmeroWeb/test/integration/test_rendering.py::TestRenderImageRegion::test_render_image_region_incomplete_request
11:35:33 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.11/site-packages/omero/gateway/__init__.py:8936: DeprecationWarning: setActiveChannels() is deprecated in OMERO 5.4.0.Use set_active_channels
11:35:33 warnings.warn("setActiveChannels() is deprecated in OMERO 5.4.0."
11:35:33 OmeroWeb/test/integration/test_rendering.py::TestRendering::test_copy_past_rendering_settings_from_url
11:35:33 OmeroWeb/test/integration/test_rendering.py::TestRendering::test_copy_past_rendering_settings_from_url
11:35:33 OmeroWeb/test/integration/test_rendering.py::TestRendering::test_copy_past_rendering_settings_from_url
11:35:33 OmeroWeb/test/integration/test_rendering.py::TestRendering::test_copy_past_rendering_settings_from_url
11:35:33 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.11/site-packages/omero/gateway/__init__.py:9198: DeprecationWarning: Deprecated in 5.4.0. Use setChannelInverted()
11:35:33 warnings.warn("Deprecated in 5.4.0. Use setChannelInverted()",
11:35:33 OmeroWeb/test/integration/test_scripts.py: 11 warnings
11:35:33 /home/omero/workspace/OMERO-test-integration/.venv3/lib64/python3.11/site-packages/omero/callbacks.py:89: DeprecationWarning: isSet() is deprecated, use is_set() instead
11:35:33 if self.event.isSet():
11:35:33 -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
11:35:33 - generated xml file: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb/target/reports/integration/junit-results.xml -
11:35:33 =========================== short test summary info ============================
11:35:33 FAILED test/integration/test_chgrp.py::TestChgrp::test_chgrp_new_container[user] - AssertionError: assert {'update': {'...ned': False}}} == {'update': {'...e': [], ...}}}
11:35:33 Differing items:
11:35:33 {'update': {'remove': {'project': [], 'dataset': [61], 'screen': [], 'plate': [], ...}, 'childless': {'project': [58], 'dataset': [], 'orphaned': False}}} != {'update': {'childless': {'project': [], 'orphaned': False, 'dataset': []}, 'remove': {'project': [], 'plate': [], 'screen': [], 'image': [], ...}}}
11:35:33 Full diff:
11:35:33 {
11:35:33 'update': {
11:35:33 - 'childless': {
11:35:33 - 'project': [],
11:35:33 - 'orphaned': False,
11:35:33 - 'dataset': [],
11:35:33 - },
11:35:33 'remove': {
11:35:33 'project': [],
11:35:33 - 'plate': [],
11:35:33 - 'screen': [],
11:35:33 - 'image': [],
11:35:33 'dataset': [
11:35:33 61,
11:35:33 ],
11:35:33 + 'screen': [],
11:35:33 + 'plate': [],
11:35:33 + 'image': [],
11:35:33 + },
11:35:33 + 'childless': {
11:35:33 + 'project': [
11:35:33 + 58,
11:35:33 + ],
11:35:33 + 'dataset': [],
11:35:33 + 'orphaned': False,
11:35:33 },
11:35:33 },
11:35:33 }
11:35:33 =========== 1 failed, 440 passed, 448 warnings in 472.63s (0:07:52) ============
11:35:33 !! 08/07/26 12:35:33.506 error: 8 communicators not destroyed during global destruction.
11:35:33 Result: 1
11:35:33
11:35:33 BUILD SUCCESSFUL
11:35:33 Total time: 8 minutes 0 seconds
11:35:33 + deactivate
11:35:33 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
11:35:33 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
11:35:33 + export PATH
11:35:33 + unset _OLD_VIRTUAL_PATH
11:35:33 + '[' -n '' ']'
11:35:33 + hash -r
11:35:33 + '[' -n '' ']'
11:35:33 + unset VIRTUAL_ENV
11:35:33 + unset VIRTUAL_ENV_PROMPT
11:35:33 + '[' '!' '' = nondestructive ']'
11:35:33 + unset -f deactivate
11:35:33 Recording test results
11:36:08 [Checks API] No suitable checks publisher found.
11:36:08 Build step 'Publish JUnit test result report' changed build result to UNSTABLE
11:36:08 TestNG Reports Processing: START
11:36:08 Looking for TestNG results report in workspace using pattern: **/OmeroJava/target/reports/integration/*.xml
11:36:15 Did not find any matching files.
11:36:15 Finished: UNSTABLE
