Error Details
assert 1 == 0
+ where 1 = len([object #0 (::omero::model::MapAnnotation)\n{\n _id = object #1 (::omero::RLong)\n {\n _val = 7432\n }\n _details = object #2 (::omero::model::Details)\n {\n _owner = object #3 (::omero::model::Experimenter)\n {\n _id = object #4 (::omero::RLong)\n {\n _val = 3811\n }\n _details = <nil>\n _loaded = False\n _version = <nil>\n _groupExperimenterMapSeq = \n {\n }\n _groupExperimenterMapLoaded = False\n _omeName = <nil>\n _firstName = <nil>\n _middleName = <nil>\n _lastName = <nil>\n _institution = <nil>\n _ldap = <nil>\n _email = <nil>\n _config = \n {\n }\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n }\n _group = object #5 (::omero::model::ExperimenterGroup)\n {\n _id = object #6 (::omero::RLong)\n {\n _val = 2789\n }\n _details = object #7 (... leaderOfGroups = \n {\n }\n groupPermissions = object #18 (::omero::model::Permissions)\n {\n _restrictions = \n {\n }\n _extendedRestrictions = \n {\n }\n _perm1 = -120\n }\n }\n }\n _loaded = True\n _version = <nil>\n _ns = object #19 (::omero::RString)\n {\n _val = openmicroscopy.org/omero/bulk_annotations\n }\n _name = <nil>\n _description = <nil>\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n _mapValue = \n {\n [0] = object #20 (::omero::model::NamedValue)\n {\n name = Image Name\n value = A2\n }\n [1] = object #21 (::omero::model::NamedValue)\n {\n name = Type\n value = Treatment\n }\n [2] = object #22 (::omero::model::NamedValue)\n {\n name = Concentration\n value = 10\n }\n [3] = object #23 (::omero::model::NamedValue)\n {\n name = image\n value = 5843\n }\n }\n}])
+ where [object #0 (::omero::model::MapAnnotation)\n{\n _id = object #1 (::omero::RLong)\n {\n _val = 7432\n }\n _details = object #2 (::omero::model::Details)\n {\n _owner = object #3 (::omero::model::Experimenter)\n {\n _id = object #4 (::omero::RLong)\n {\n _val = 3811\n }\n _details = <nil>\n _loaded = False\n _version = <nil>\n _groupExperimenterMapSeq = \n {\n }\n _groupExperimenterMapLoaded = False\n _omeName = <nil>\n _firstName = <nil>\n _middleName = <nil>\n _lastName = <nil>\n _institution = <nil>\n _ldap = <nil>\n _email = <nil>\n _config = \n {\n }\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n }\n _group = object #5 (::omero::model::ExperimenterGroup)\n {\n _id = object #6 (::omero::RLong)\n {\n _val = 2789\n }\n _details = object #7 (... leaderOfGroups = \n {\n }\n groupPermissions = object #18 (::omero::model::Permissions)\n {\n _restrictions = \n {\n }\n _extendedRestrictions = \n {\n }\n _perm1 = -120\n }\n }\n }\n _loaded = True\n _version = <nil>\n _ns = object #19 (::omero::RString)\n {\n _val = openmicroscopy.org/omero/bulk_annotations\n }\n _name = <nil>\n _description = <nil>\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n _mapValue = \n {\n [0] = object #20 (::omero::model::NamedValue)\n {\n name = Image Name\n value = A2\n }\n [1] = object #21 (::omero::model::NamedValue)\n {\n name = Type\n value = Treatment\n }\n [2] = object #22 (::omero::model::NamedValue)\n {\n name = Concentration\n value = 10\n }\n [3] = object #23 (::omero::model::NamedValue)\n {\n name = image\n value = 5843\n }\n }\n}] = get_all_map_annotations()
+ where get_all_map_annotations = <test_populate.Dataset101Images object at 0x7f616809ca90>.get_all_map_annotationsStack Trace
self = <test_populate.TestPopulateMetadata object at 0x7f6168073650>
fixture = <test_populate.Dataset101Images object at 0x7f616809ca90>
batch_size = 1
@mark.parametrize("fixture", METADATA_FIXTURES, ids=METADATA_IDS)
@mark.parametrize("batch_size", (None, 1, 10))
def testPopulateMetadata(self, fixture, batch_size):
"""
We should really test each of the parsing contexts in separate tests
but in practice each one uses data created by the others, so for
now just run them all together
"""
fixture.init(self)
t = self._test_parsing_context(fixture, batch_size)
self._assert_parsing_context_values(t, fixture)
> self._test_bulk_to_map_annotation_context(fixture, batch_size)
test/integration/metadata/test_populate.py:1026:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <test_populate.TestPopulateMetadata object at 0x7f6168073650>
fixture = <test_populate.Dataset101Images object at 0x7f616809ca90>
batch_size = 1
def _test_bulk_to_map_annotation_context(self, fixture, batch_size):
# self._testPopulateMetadataPlate()
> assert len(fixture.get_all_map_annotations()) == 0
E assert 1 == 0
E + where 1 = len([object #0 (::omero::model::MapAnnotation)\n{\n _id = object #1 (::omero::RLong)\n {\n _val = 7432\n }\n _details = object #2 (::omero::model::Details)\n {\n _owner = object #3 (::omero::model::Experimenter)\n {\n _id = object #4 (::omero::RLong)\n {\n _val = 3811\n }\n _details = <nil>\n _loaded = False\n _version = <nil>\n _groupExperimenterMapSeq = \n {\n }\n _groupExperimenterMapLoaded = False\n _omeName = <nil>\n _firstName = <nil>\n _middleName = <nil>\n _lastName = <nil>\n _institution = <nil>\n _ldap = <nil>\n _email = <nil>\n _config = \n {\n }\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n }\n _group = object #5 (::omero::model::ExperimenterGroup)\n {\n _id = object #6 (::omero::RLong)\n {\n _val = 2789\n }\n _details = object #7 (... leaderOfGroups = \n {\n }\n groupPermissions = object #18 (::omero::model::Permissions)\n {\n _restrictions = \n {\n }\n _extendedRestrictions = \n {\n }\n _perm1 = -120\n }\n }\n }\n _loaded = True\n _version = <nil>\n _ns = object #19 (::omero::RString)\n {\n _val = openmicroscopy.org/omero/bulk_annotations\n }\n _name = <nil>\n _description = <nil>\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n _mapValue = \n {\n [0] = object #20 (::omero::model::NamedValue)\n {\n name = Image Name\n value = A2\n }\n [1] = object #21 (::omero::model::NamedValue)\n {\n name = Type\n value = Treatment\n }\n [2] = object #22 (::omero::model::NamedValue)\n {\n name = Concentration\n value = 10\n }\n [3] = object #23 (::omero::model::NamedValue)\n {\n name = image\n value = 5843\n }\n }\n}])
E + where [object #0 (::omero::model::MapAnnotation)\n{\n _id = object #1 (::omero::RLong)\n {\n _val = 7432\n }\n _details = object #2 (::omero::model::Details)\n {\n _owner = object #3 (::omero::model::Experimenter)\n {\n _id = object #4 (::omero::RLong)\n {\n _val = 3811\n }\n _details = <nil>\n _loaded = False\n _version = <nil>\n _groupExperimenterMapSeq = \n {\n }\n _groupExperimenterMapLoaded = False\n _omeName = <nil>\n _firstName = <nil>\n _middleName = <nil>\n _lastName = <nil>\n _institution = <nil>\n _ldap = <nil>\n _email = <nil>\n _config = \n {\n }\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n }\n _group = object #5 (::omero::model::ExperimenterGroup)\n {\n _id = object #6 (::omero::RLong)\n {\n _val = 2789\n }\n _details = object #7 (... leaderOfGroups = \n {\n }\n groupPermissions = object #18 (::omero::model::Permissions)\n {\n _restrictions = \n {\n }\n _extendedRestrictions = \n {\n }\n _perm1 = -120\n }\n }\n }\n _loaded = True\n _version = <nil>\n _ns = object #19 (::omero::RString)\n {\n _val = openmicroscopy.org/omero/bulk_annotations\n }\n _name = <nil>\n _description = <nil>\n _annotationLinksSeq = \n {\n }\n _annotationLinksLoaded = False\n _annotationLinksCountPerOwner = \n {\n }\n _mapValue = \n {\n [0] = object #20 (::omero::model::NamedValue)\n {\n name = Image Name\n value = A2\n }\n [1] = object #21 (::omero::model::NamedValue)\n {\n name = Type\n value = Treatment\n }\n [2] = object #22 (::omero::model::NamedValue)\n {\n name = Concentration\n value = 10\n }\n [3] = object #23 (::omero::model::NamedValue)\n {\n name = image\n value = 5843\n }\n }\n}] = get_all_map_annotations()
E + where get_all_map_annotations = <test_populate.Dataset101Images object at 0x7f616809ca90>.get_all_map_annotations
test/integration/metadata/test_populate.py:938: AssertionError