Stack Trace
self = <test.integration.gatewaytest.test_get_objects.TestGetObject object at 0x7fddbcd7ea90>
def testGetObjectsAnnotation(self):
# create new group and user - don't rely on existing test user/group
group = self.new_group(perms='rwra--')
client, user = self.new_client_and_user(group=group)
conn = BlitzGateway(client_obj=client)
ann_types = ["CommentAnnotation", "TagAnnotation",
"LongAnnotation", "XmlAnnotation",
"DoubleAnnotation", "BooleanAnnotation",
"TimestampAnnotation", "TermAnnotation"]
ns = "test_get_objects_namespace"
ns_map = "test_get_objects_map_namespace"
ns_file = "test_get_objects_annotation_file"
def create_dataset_with_annotations(name, dtype="Dataset"):
if dtype == "Dataset":
obj = DatasetI()
wrapper = omero.gateway.DatasetWrapper(conn, obj)
elif dtype == "Project":
obj = ProjectI()
wrapper = omero.gateway.ProjectWrapper(conn, obj)
wrapper.setName(name)
wrapper.save()
# Create total of 10 annotations on the object...
# create Comment, Tag, Xml, etc
for ann_type in ann_types:
ann = getattr(omero.gateway, ann_type + "Wrapper")(conn)
ann.setNs(ns)
if ann_type in ("LongAnnotation", "DoubleAnnotation",
"TimestampAnnotation"):
ann.setValue(100.0)
elif ann_type == "BooleanAnnotation":
ann.setValue(True)
else:
ann.setValue("Test %s: %s" % (ann_type, name))
wrapper.linkAnnotation(ann)
# create MapAnnotation
mapAnn = omero.gateway.MapAnnotationWrapper(conn)
mapAnn.setNs(ns)
mapAnn.setValue([("key1", "value1"), ("key2", "value2")])
mapAnn.setNs(ns_map)
mapAnn.save()
wrapper.linkAnnotation(mapAnn)
# create FileAnnotation
fileAnn = omero.gateway.FileAnnotationWrapper(conn)
fileObj = omero.model.OriginalFileI()
fileObj = omero.gateway.OriginalFileWrapper(conn, fileObj)
fileObj.setName(omero.rtypes.rstring('fileName'))
fileObj.setPath(omero.rtypes.rstring('path/to/file'))
fileObj.setHash(omero.rtypes.rstring('a'))
fileObj.setSize(omero.rtypes.rlong(0))
fileObj.save()
fileAnn.setFile(fileObj)
fileAnn.setNs(ns_file)
fileAnn.save()
wrapper.linkAnnotation(fileAnn)
return wrapper
dataset1 = create_dataset_with_annotations("Dataset 1")
dataset2 = create_dataset_with_annotations("Dataset 2")
create_dataset_with_annotations("Project 1", dtype="Project")
# Add Tag to Group
tag = omero.gateway.TagAnnotationWrapper(conn)
tag.setNs("test_get_objects_group_tag")
tag.setValue("Test Tag on Group")
group = conn.getGroupFromContext()
> group.linkAnnotation(tag)
test/integration/gatewaytest/test_get_objects.py:725:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
../../../../.venv3/lib64/python3.11/site-packages/omero/gateway/__init__.py:1133: in linkAnnotation
ann = self._linkAnnotation(ann)
^^^^^^^^^^^^^^^^^^^^^^^^^
../../../../.venv3/lib64/python3.11/site-packages/omero/gateway/__init__.py:1065: in _linkAnnotation
return self._linkObject(ann, "%sAnnotationLinkI" % self.OMERO_CLASS)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <_ExperimenterGroupWrapper id=2745>
obj = <omero.gateway.TagAnnotationWrapper object at 0x7fdd87c185d0>
lnkobjtype = 'ExperimenterGroupAnnotationLinkI'
def _linkObject(self, obj, lnkobjtype):
"""
Saves the object to DB if needed - setting the permissions manually.
Creates the object link and saves it, setting permissions manually.
TODO: Can't set permissions manually in 4.2
- Assumes world & group writable
:param obj: The object to link
:type obj: :class:`BlitzObjectWrapper`
"""
ctx = self._conn.SERVICE_OPTS.copy()
> ctx.setOmeroGroup(self.details.group.id.val)
^^^^^^^^^^^^^^^^^^^^^
E AttributeError: 'NoneType' object has no attribute 'id'
../../../../.venv3/lib64/python3.11/site-packages/omero/gateway/__init__.py:1042: AttributeError
