00:56:13 Started by upstream project "Trigger" build number 136
00:56:13 originally caused by:
00:56:13 Started by timer
00:56:13 Running as SYSTEM
00:56:13 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-docs
00:56:13 The recommended git tool is: NONE
00:56:13 No credentials specified
00:56:13 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-docs/.git # timeout=10
00:56:13 Fetching changes from the remote Git repository
00:56:13 > git config remote.origin.url https://github.com/ome/ome-documentation # timeout=10
00:56:13 Fetching upstream changes from https://github.com/ome/ome-documentation
00:56:13 > git --version # timeout=10
00:56:13 > git --version # 'git version 2.39.3'
00:56:13 > git fetch --tags --force --progress -- https://github.com/ome/ome-documentation +refs/heads/*:refs/remotes/origin/* # timeout=10
00:56:16 > git rev-parse origin/develop^{commit} # timeout=10
00:56:16 Checking out Revision 2e719f450e6d6f41842d9a617331a60f36570cb0 (origin/develop)
00:56:16 > git config core.sparsecheckout # timeout=10
00:56:16 > git checkout -f 2e719f450e6d6f41842d9a617331a60f36570cb0 # timeout=10
00:56:16 Commit message: "Merge pull request #2442 from jburel/debian10"
00:56:16 > git rev-list --no-walk fe7e16bf9910671a6d7792f06bea6c96f7bb01f9 # timeout=10
00:56:17 Cleaning workspace
00:56:17 > git rev-parse --verify HEAD # timeout=10
00:56:17 Resetting working tree
00:56:17 > git reset --hard # timeout=10
00:56:17 > git clean -fdx # timeout=10
00:56:17 [OMERO-docs] $ /bin/bash -xe /tmp/jenkins11286875571666495382.sh
00:56:17 + python3 -mvenv venv
00:56:21 + source /home/omero/workspace/OMERO-docs/venv/bin/activate
00:56:21 ++ deactivate nondestructive
00:56:21 ++ '[' -n '' ']'
00:56:21 ++ '[' -n '' ']'
00:56:21 ++ '[' -n /bin/bash -o -n '' ']'
00:56:21 ++ hash -r
00:56:21 ++ '[' -n '' ']'
00:56:21 ++ unset VIRTUAL_ENV
00:56:21 ++ '[' '!' nondestructive = nondestructive ']'
00:56:21 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-docs/venv
00:56:21 ++ export VIRTUAL_ENV
00:56:21 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:56:21 ++ PATH=/home/omero/workspace/OMERO-docs/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:56:21 ++ export PATH
00:56:21 ++ '[' -n '' ']'
00:56:21 ++ '[' -z '' ']'
00:56:21 ++ _OLD_VIRTUAL_PS1=
00:56:21 ++ PS1='(venv) '
00:56:21 ++ export PS1
00:56:21 ++ '[' -n /bin/bash -o -n '' ']'
00:56:21 ++ hash -r
00:56:21 + pip install -U pip
00:56:21 Requirement already satisfied: pip in ./venv/lib/python3.9/site-packages (21.2.3)
00:56:21 Collecting pip
00:56:21 Using cached pip-24.1.2-py3-none-any.whl (1.8 MB)
00:56:21 Installing collected packages: pip
00:56:21 Attempting uninstall: pip
00:56:21 Found existing installation: pip 21.2.3
00:56:21 Uninstalling pip-21.2.3:
00:56:21 Successfully uninstalled pip-21.2.3
00:56:23 Successfully installed pip-24.1.2
00:56:23 + pip install -U scc
00:56:24 Collecting scc
00:56:24 Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB)
00:56:24 Collecting PyGithub>=1.54 (from scc)
00:56:24 Using cached PyGithub-2.3.0-py3-none-any.whl.metadata (3.8 kB)
00:56:24 Collecting PyYAML>=5.1 (from scc)
00:56:24 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
00:56:24 Collecting future (from scc)
00:56:24 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
00:56:24 Collecting ruamel.yaml (from scc)
00:56:24 Using cached ruamel.yaml-0.18.6-py3-none-any.whl.metadata (23 kB)
00:56:24 Collecting ruamel.yaml.jinja2 (from scc)
00:56:24 Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB)
00:56:24 Collecting six (from scc)
00:56:24 Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB)
00:56:24 Collecting urllib3<2 (from scc)
00:56:24 Using cached urllib3-1.26.19-py2.py3-none-any.whl.metadata (49 kB)
00:56:24 Collecting yaclifw<0.3,>=0.2.0 (from scc)
00:56:24 Using cached yaclifw-0.2.0-py3-none-any.whl
00:56:25 Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc)
00:56:25 Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl.metadata (8.6 kB)
00:56:25 Collecting requests>=2.14.0 (from PyGithub>=1.54->scc)
00:56:25 Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB)
00:56:25 Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
00:56:25 Using cached PyJWT-2.8.0-py3-none-any.whl.metadata (4.2 kB)
00:56:25 Collecting typing-extensions>=4.0.0 (from PyGithub>=1.54->scc)
00:56:25 Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB)
00:56:25 Collecting Deprecated (from PyGithub>=1.54->scc)
00:56:25 Using cached Deprecated-1.2.14-py2.py3-none-any.whl.metadata (5.4 kB)
00:56:25 Collecting ruamel.yaml.clib>=0.2.7 (from ruamel.yaml->scc)
00:56:25 Using cached ruamel.yaml.clib-0.2.8-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl.metadata (2.2 kB)
00:56:25 Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
00:56:25 Using cached cryptography-42.0.8-cp39-abi3-manylinux_2_28_x86_64.whl.metadata (5.3 kB)
00:56:26 Collecting cffi>=1.4.1 (from pynacl>=1.4.0->PyGithub>=1.54->scc)
00:56:26 Using cached cffi-1.16.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (1.5 kB)
00:56:26 Collecting charset-normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc)
00:56:26 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB)
00:56:26 Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc)
00:56:26 Using cached idna-3.7-py3-none-any.whl.metadata (9.9 kB)
00:56:26 Collecting certifi>=2017.4.17 (from requests>=2.14.0->PyGithub>=1.54->scc)
00:56:26 Using cached certifi-2024.7.4-py3-none-any.whl.metadata (2.2 kB)
00:56:26 Collecting wrapt<2,>=1.10 (from Deprecated->PyGithub>=1.54->scc)
00:56:26 Using cached wrapt-1.16.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB)
00:56:26 Collecting pycparser (from cffi>=1.4.1->pynacl>=1.4.0->PyGithub>=1.54->scc)
00:56:26 Using cached pycparser-2.22-py3-none-any.whl.metadata (943 bytes)
00:56:26 Using cached scc-0.20.0-py3-none-any.whl (48 kB)
00:56:26 Using cached PyGithub-2.3.0-py3-none-any.whl (354 kB)
00:56:26 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB)
00:56:26 Using cached urllib3-1.26.19-py2.py3-none-any.whl (143 kB)
00:56:26 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:56:26 Using cached ruamel.yaml-0.18.6-py3-none-any.whl (117 kB)
00:56:26 Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB)
00:56:26 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
00:56:26 Using cached PyJWT-2.8.0-py3-none-any.whl (22 kB)
00:56:26 Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (856 kB)
00:56:26 Using cached requests-2.32.3-py3-none-any.whl (64 kB)
00:56:26 Using cached ruamel.yaml.clib-0.2.8-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl (562 kB)
00:56:26 Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB)
00:56:26 Using cached Deprecated-1.2.14-py2.py3-none-any.whl (9.6 kB)
00:56:26 Using cached certifi-2024.7.4-py3-none-any.whl (162 kB)
00:56:26 Using cached cffi-1.16.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (443 kB)
00:56:26 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB)
00:56:26 Using cached cryptography-42.0.8-cp39-abi3-manylinux_2_28_x86_64.whl (3.9 MB)
00:56:26 Using cached idna-3.7-py3-none-any.whl (66 kB)
00:56:26 Using cached wrapt-1.16.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (80 kB)
00:56:26 Using cached pycparser-2.22-py3-none-any.whl (117 kB)
00:56:26 Installing collected packages: wrapt, urllib3, typing-extensions, six, ruamel.yaml.clib, PyYAML, pyjwt, pycparser, idna, future, charset-normalizer, certifi, yaclifw, ruamel.yaml, requests, Deprecated, cffi, ruamel.yaml.jinja2, pynacl, cryptography, PyGithub, scc
00:56:28 Successfully installed Deprecated-1.2.14 PyGithub-2.3.0 PyYAML-6.0.1 certifi-2024.7.4 cffi-1.16.0 charset-normalizer-3.3.2 cryptography-42.0.8 future-1.0.0 idna-3.7 pycparser-2.22 pyjwt-2.8.0 pynacl-1.5.0 requests-2.32.3 ruamel.yaml-0.18.6 ruamel.yaml.clib-0.2.8 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.16.0 typing-extensions-4.12.2 urllib3-1.26.19 wrapt-1.16.0 yaclifw-0.2.0
00:56:29 + test -e src
00:56:29 + scc merge develop --no-ask --reset --comment -S success-only --push merge_ci
00:56:31 Following Github server redirection from /repos/ome/ome-documentation to /repositories/3198415
00:56:31 2024-07-13 00:56:31,166 [github.Reque] INFO Following Github server redirection from /repos/ome/ome-documentation to /repositories/3198415
00:56:33 2024-07-13 00:56:33,336 [ scc.merge] INFO Merging Pull Request(s) based on develop
00:56:33 2024-07-13 00:56:33,336 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
00:56:33 2024-07-13 00:56:33,336 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
00:56:33 2024-07-13 00:56:33,336 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
00:56:33 2024-07-13 00:56:33,336 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
00:56:33 2024-07-13 00:56:33,336 [ scc.merge] INFO Excluding Pull Request(s) without successful status
00:57:07 2024-07-13 00:57:07,580 [ scc.merge] INFO Repository: ome/ome-documentation
00:57:07 2024-07-13 00:57:07,580 [ scc.merge] INFO Excluded PRs:
00:57:07 2024-07-13 00:57:07,580 [ scc.merge] INFO - PR 2432 ehrenfeu 'Some suggestions on the OMERO.movie page' (user: ehrenfeu)
00:57:07 2024-07-13 00:57:07,580 [ scc.merge] INFO - PR 2393 bernt-matthias 'fix option capitalization' (user: bernt-matthias)
00:57:07 2024-07-13 00:57:07,580 [ scc.merge] INFO - PR 2357 fmeyenhofer 'Add a OMERO.table visualisation example' (user: fmeyenhofer)
00:57:07 2024-07-13 00:57:07,580 [ scc.merge] INFO - PR 2347 jburel 'pin version to match rtd ones' (exclude comment)
00:57:07 2024-07-13 00:57:07,580 [ scc.merge] INFO - PR 2298 pwalczysko 'test' (exclude comment)
00:57:07 2024-07-13 00:57:07,580 [ scc.merge] INFO Already up to date.
00:57:07 2024-07-13 00:57:07,580 [ scc.merge] INFO
00:57:07 2024-07-13 00:57:07,580 [ scc.merge] INFO Merged PRs:
00:57:07 2024-07-13 00:57:07,580 [ scc.merge] INFO - PR 2291 pwalczysko 'Add ansible and docker install doc - former "install.rst"'
00:57:07 2024-07-13 00:57:07,581 [ scc.merge] INFO - PR 2353 jburel 'Mencoder'
00:57:07 2024-07-13 00:57:07,581 [ scc.merge] INFO - PR 2355 will-moore 'Update python Tables code to use 'Image' column'
00:57:07 2024-07-13 00:57:07,581 [ scc.merge] INFO - PR 2424 DavidStirling 'Clarify CSRF token usage'
00:57:07 2024-07-13 00:57:07,581 [ scc.merge] INFO - PR 2430 jburel 'exclude trac'
00:57:07 2024-07-13 00:57:07,581 [ scc.merge] INFO - PR 2441 chris-allan 'Add documentation for ome/omero-py#418'
00:57:07 2024-07-13 00:57:07,581 [ scc.merge] INFO - PR 2444 snoopycrimecop 'Changes from upstream repositories: openmicroscopy'
00:57:07 2024-07-13 00:57:07,581 [ scc.merge] INFO
00:57:10 2024-07-13 00:57:10,327 [ scc.merge] INFO Merged branch pushed to https://github.com/snoopycrimecop/ome-documentation/tree/merge_ci
00:57:10 [OMERO-docs] $ /bin/bash -xe /tmp/jenkins1371094105158577005.sh
00:57:10 + source /home/omero/workspace/OMERO-docs/venv/bin/activate
00:57:10 ++ deactivate nondestructive
00:57:10 ++ '[' -n '' ']'
00:57:10 ++ '[' -n '' ']'
00:57:10 ++ '[' -n /bin/bash -o -n '' ']'
00:57:10 ++ hash -r
00:57:10 ++ '[' -n '' ']'
00:57:10 ++ unset VIRTUAL_ENV
00:57:10 ++ '[' '!' nondestructive = nondestructive ']'
00:57:10 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-docs/venv
00:57:10 ++ export VIRTUAL_ENV
00:57:10 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:57:10 ++ PATH=/home/omero/workspace/OMERO-docs/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:57:10 ++ export PATH
00:57:10 ++ '[' -n '' ']'
00:57:10 ++ '[' -z '' ']'
00:57:10 ++ _OLD_VIRTUAL_PS1=
00:57:10 ++ PS1='(venv) '
00:57:10 ++ export PS1
00:57:10 ++ '[' -n /bin/bash -o -n '' ']'
00:57:10 ++ hash -r
00:57:10 + pip install -r requirements.txt
00:57:11 Collecting sphinx==5.3.0 (from -r requirements.txt (line 1))
00:57:11 Using cached sphinx-5.3.0-py3-none-any.whl.metadata (6.4 kB)
00:57:11 Collecting sphinx_rtd_theme==1.1.1 (from -r requirements.txt (line 2))
00:57:11 Using cached sphinx_rtd_theme-1.1.1-py2.py3-none-any.whl.metadata (4.4 kB)
00:57:11 Collecting sphinxcontrib-applehelp (from sphinx==5.3.0->-r requirements.txt (line 1))
00:57:11 Using cached sphinxcontrib_applehelp-1.0.8-py3-none-any.whl.metadata (2.3 kB)
00:57:11 Collecting sphinxcontrib-devhelp (from sphinx==5.3.0->-r requirements.txt (line 1))
00:57:11 Using cached sphinxcontrib_devhelp-1.0.6-py3-none-any.whl.metadata (2.3 kB)
00:57:11 Collecting sphinxcontrib-jsmath (from sphinx==5.3.0->-r requirements.txt (line 1))
00:57:11 Using cached sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl.metadata (1.4 kB)
00:57:11 Collecting sphinxcontrib-htmlhelp>=2.0.0 (from sphinx==5.3.0->-r requirements.txt (line 1))
00:57:11 Using cached sphinxcontrib_htmlhelp-2.0.5-py3-none-any.whl.metadata (2.3 kB)
00:57:11 Collecting sphinxcontrib-serializinghtml>=1.1.5 (from sphinx==5.3.0->-r requirements.txt (line 1))
00:57:11 Using cached sphinxcontrib_serializinghtml-1.1.10-py3-none-any.whl.metadata (2.4 kB)
00:57:11 Collecting sphinxcontrib-qthelp (from sphinx==5.3.0->-r requirements.txt (line 1))
00:57:11 Using cached sphinxcontrib_qthelp-1.0.7-py3-none-any.whl.metadata (2.2 kB)
00:57:11 Collecting Jinja2>=3.0 (from sphinx==5.3.0->-r requirements.txt (line 1))
00:57:11 Using cached jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB)
00:57:11 Collecting Pygments>=2.12 (from sphinx==5.3.0->-r requirements.txt (line 1))
00:57:11 Using cached pygments-2.18.0-py3-none-any.whl.metadata (2.5 kB)
00:57:11 Collecting docutils<0.20,>=0.14 (from sphinx==5.3.0->-r requirements.txt (line 1))
00:57:11 Using cached docutils-0.19-py3-none-any.whl.metadata (2.7 kB)
00:57:11 Collecting snowballstemmer>=2.0 (from sphinx==5.3.0->-r requirements.txt (line 1))
00:57:11 Using cached snowballstemmer-2.2.0-py2.py3-none-any.whl.metadata (6.5 kB)
00:57:11 Collecting babel>=2.9 (from sphinx==5.3.0->-r requirements.txt (line 1))
00:57:11 Using cached Babel-2.15.0-py3-none-any.whl.metadata (1.5 kB)
00:57:12 Collecting alabaster<0.8,>=0.7 (from sphinx==5.3.0->-r requirements.txt (line 1))
00:57:12 Using cached alabaster-0.7.16-py3-none-any.whl.metadata (2.9 kB)
00:57:12 Collecting imagesize>=1.3 (from sphinx==5.3.0->-r requirements.txt (line 1))
00:57:12 Using cached imagesize-1.4.1-py2.py3-none-any.whl.metadata (1.5 kB)
00:57:12 Requirement already satisfied: requests>=2.5.0 in ./venv/lib/python3.9/site-packages (from sphinx==5.3.0->-r requirements.txt (line 1)) (2.32.3)
00:57:12 Collecting packaging>=21.0 (from sphinx==5.3.0->-r requirements.txt (line 1))
00:57:12 Using cached packaging-24.1-py3-none-any.whl.metadata (3.2 kB)
00:57:12 Collecting importlib-metadata>=4.8 (from sphinx==5.3.0->-r requirements.txt (line 1))
00:57:12 Using cached importlib_metadata-8.0.0-py3-none-any.whl.metadata (4.6 kB)
00:57:12 Collecting docutils<0.20,>=0.14 (from sphinx==5.3.0->-r requirements.txt (line 1))
00:57:12 Using cached docutils-0.17.1-py2.py3-none-any.whl.metadata (2.9 kB)
00:57:12 Collecting zipp>=0.5 (from importlib-metadata>=4.8->sphinx==5.3.0->-r requirements.txt (line 1))
00:57:12 Using cached zipp-3.19.2-py3-none-any.whl.metadata (3.6 kB)
00:57:12 Collecting MarkupSafe>=2.0 (from Jinja2>=3.0->sphinx==5.3.0->-r requirements.txt (line 1))
00:57:12 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB)
00:57:12 Requirement already satisfied: charset-normalizer<4,>=2 in ./venv/lib/python3.9/site-packages (from requests>=2.5.0->sphinx==5.3.0->-r requirements.txt (line 1)) (3.3.2)
00:57:12 Requirement already satisfied: idna<4,>=2.5 in ./venv/lib/python3.9/site-packages (from requests>=2.5.0->sphinx==5.3.0->-r requirements.txt (line 1)) (3.7)
00:57:12 Requirement already satisfied: urllib3<3,>=1.21.1 in ./venv/lib/python3.9/site-packages (from requests>=2.5.0->sphinx==5.3.0->-r requirements.txt (line 1)) (1.26.19)
00:57:12 Requirement already satisfied: certifi>=2017.4.17 in ./venv/lib/python3.9/site-packages (from requests>=2.5.0->sphinx==5.3.0->-r requirements.txt (line 1)) (2024.7.4)
00:57:12 Using cached sphinx-5.3.0-py3-none-any.whl (3.2 MB)
00:57:12 Using cached sphinx_rtd_theme-1.1.1-py2.py3-none-any.whl (2.8 MB)
00:57:12 Using cached alabaster-0.7.16-py3-none-any.whl (13 kB)
00:57:13 Using cached Babel-2.15.0-py3-none-any.whl (9.6 MB)
00:57:13 Using cached docutils-0.17.1-py2.py3-none-any.whl (575 kB)
00:57:13 Using cached imagesize-1.4.1-py2.py3-none-any.whl (8.8 kB)
00:57:13 Using cached importlib_metadata-8.0.0-py3-none-any.whl (24 kB)
00:57:13 Using cached jinja2-3.1.4-py3-none-any.whl (133 kB)
00:57:13 Using cached packaging-24.1-py3-none-any.whl (53 kB)
00:57:13 Using cached pygments-2.18.0-py3-none-any.whl (1.2 MB)
00:57:13 Using cached snowballstemmer-2.2.0-py2.py3-none-any.whl (93 kB)
00:57:13 Using cached sphinxcontrib_htmlhelp-2.0.5-py3-none-any.whl (99 kB)
00:57:13 Using cached sphinxcontrib_serializinghtml-1.1.10-py3-none-any.whl (92 kB)
00:57:13 Using cached sphinxcontrib_applehelp-1.0.8-py3-none-any.whl (120 kB)
00:57:13 Using cached sphinxcontrib_devhelp-1.0.6-py3-none-any.whl (83 kB)
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00:57:13 Using cached zipp-3.19.2-py3-none-any.whl (9.0 kB)
00:57:13 Installing collected packages: snowballstemmer, zipp, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, Pygments, packaging, MarkupSafe, imagesize, docutils, babel, alabaster, Jinja2, importlib-metadata, sphinx, sphinx_rtd_theme
00:57:17 Successfully installed Jinja2-3.1.4 MarkupSafe-2.1.5 Pygments-2.18.0 alabaster-0.7.16 babel-2.15.0 docutils-0.17.1 imagesize-1.4.1 importlib-metadata-8.0.0 packaging-24.1 snowballstemmer-2.2.0 sphinx-5.3.0 sphinx_rtd_theme-1.1.1 sphinxcontrib-applehelp-1.0.8 sphinxcontrib-devhelp-1.0.6 sphinxcontrib-htmlhelp-2.0.5 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-1.0.7 sphinxcontrib-serializinghtml-1.1.10 zipp-3.19.2
00:57:17 + cd omero
00:57:17 + make clean html linkcheck
00:57:17 rm -rf _build/*
00:57:17 sphinx-build -b html -d _build/doctrees . _build/html
00:57:17 Running Sphinx v5.3.0
00:57:17 making output directory... done
00:57:17 building [mo]: targets for 0 po files that are out of date
00:57:17 building [html]: targets for 159 source files that are out of date
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00:58:05 (sysadmins/server-ldap: line 325) -ignored- https://msdn.microsoft.com/en-us/library/aa362244(v=vs.85).aspx
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00:58:06 (developers/Clients/ImportLibrary: line 48) redirect https://docs.openmicroscopy.org/bio-formats/7.3.0/formats/aperio-svs-tiff.html - with Found to https://bio-formats.readthedocs.io/en/v7.3.0/formats/aperio-svs-tiff.html
00:58:06 (developers/analysis: line 53) redirect http://cvs.openmicroscopy.org.uk/snapshots/movies/omero-4-1/mov/FlexPreview4.1-configuration.mov - permanently to https://downloads.openmicroscopy.org/movies/omero-4-1/mov/FlexPreview4.1-configuration.mov
00:58:06 ( developers/Cpp: line 173) redirect https://ccache.samba.org/ - permanently to https://ccache.dev/
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00:58:06 (developers/Clients/ImportLibrary: line 48) redirect https://docs.openmicroscopy.org/latest/ome-model/omero-pyramid/ - with Found to https://ome-model.readthedocs.io/en/stable/omero-pyramid/
00:58:06 (sysadmins/troubleshooting: line 286) redirect http://lists.openmicroscopy.org.uk/pipermail/ome-devel/2014-October/003020.html - permanently to https://lists.openmicroscopy.org.uk/pipermail/ome-devel/2014-October/003020.html
00:58:06 (sysadmins/public: line 229) redirect http://dx.doi.org/10.17867/10000109 - with Found to https://omero.lifesci.dundee.ac.uk/webclient/login/?url=%2Fwebclient%2F%3Fshow%3Dproject-27936
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00:58:06 (sysadmins/version-requirements: line 493) ok http://nginx.org/packages/centos/9/x86_64/
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00:58:07 ( index: line 32) ok http://qa.openmicroscopy.org.uk/registry/demo_account/
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00:58:08 (sysadmins/server-ldap: line 166) ok http://www.faqs.org/rfcs/rfc2254.html
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00:58:08 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 362) ok http://www.gevent.org/
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00:58:11 (sysadmins/server-performance: line 187) ok https://checkmk.com/
00:58:11 (sysadmins/version-requirements: line 249) ok https://apt.postgresql.org/pub/repos/apt/dists/jammy-pgdg/
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00:58:19 ( sysadmins/grid: line 310) ok https://doc.zeroc.com/ice/3.6/ice-services/icegrid/resource-allocation-using-icegrid-sessions#id-.ResourceAllocationusingIceGridSessionsv3.6-ControllingAccesstoIceGridSessions
00:58:19 (sysadmins/ansible-docker: line 27) ok https://docs.ansible.com/ansible_community.html
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00:58:20 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 157) ok https://docs.gunicorn.org/en/stable/settings.html
00:58:20 (sysadmins/unix/install-web/web-deployment: line 11) redirect https://docs.gunicorn.org/ - with Found to https://docs.gunicorn.org/en/stable/
00:58:20 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 350) ok https://docs.gunicorn.org/en/stable/settings.html#threads
00:58:21 (sysadmins/config: line 2923) ok https://docs.gunicorn.org/en/latest/settings.html
00:58:21 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 334) ok https://docs.gunicorn.org/en/stable/design.html
00:58:21 (sysadmins/config: line 2931) ok https://docs.gunicorn.org/en/stable/settings.html#timeout
00:58:21 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 370) ok https://docs.gunicorn.org/en/stable/settings.html#worker-connections
00:58:21 (sysadmins/config: line 2939) ok https://docs.gunicorn.org/en/stable/settings.html#workers
00:58:21 (developers/GettingStarted: line 232) ok https://docs.jboss.org/hibernate/orm/3.6/reference/en-US/html/queryhql.html
00:58:21 (developers/Server/Events: line 41) ok https://docs.jboss.org/hibernate/core/3.6/reference/en-US/html/events.html
00:58:21 (developers/Server/SecuritySystem: line 38) ok https://docs.jboss.org/hibernate/core/3.6/reference/en-US/html/filters.html
00:58:21 (sysadmins/limitations: line 82) redirect https://docs.openmicroscopy.org/bio-formats/7.3.0/formats/gatan-digital-micrograph.html - with Found to https://bio-formats.readthedocs.io/en/v7.3.0/formats/gatan-digital-micrograph.html
00:58:21 (developers/ImportFS: line 54) redirect https://docs.openmicroscopy.org/bio-formats/7.3.0/ - with Found to https://bio-formats.readthedocs.io/en/v7.3.0/
00:58:22 (sysadmins/limitations: line 83) redirect https://docs.openmicroscopy.org/bio-formats/7.3.0/formats/mrc.html - with Found to https://bio-formats.readthedocs.io/en/v7.3.0/formats/mrc.html
00:58:22 (sysadmins/limitations: line 84) redirect https://docs.openmicroscopy.org/bio-formats/7.3.0/formats/tiff.html - with Found to https://bio-formats.readthedocs.io/en/v7.3.0/formats/tiff.html
00:58:22 (users/cli/import: line 4) redirect https://docs.openmicroscopy.org/bio-formats/7.3.0/supported-formats.html - with Found to https://bio-formats.readthedocs.io/en/v7.3.0/supported-formats.html
00:58:22 (developers/GettingStarted: line 60) redirect https://docs.openmicroscopy.org/contributing/ci-omero.html - permanently to https://ome-contributing.readthedocs.io/en/latest/ci-omero.html
00:58:22 (developers/installation: line 30) redirect https://docs.openmicroscopy.org/contributing/using-git.html - permanently to https://ome-contributing.readthedocs.io/en/latest/using-git.html
00:58:22 (sysadmins/UpgradeCheck: line 12) redirect https://docs.openmicroscopy.org/bio-formats/7.3.0/users/comlinetools/index.html#version-checker - with Found to https://bio-formats.readthedocs.io/en/v7.3.0/users/comlinetools/index.html#version-checker
00:58:22 (sysadmins/limitations: line 61) redirect https://docs.openmicroscopy.org/latest/bio-formats/users/comlinetools/conversion.html - with Found to https://bio-formats.readthedocs.io/en/stable/users/comlinetools/conversion.html
00:58:22 ( index: line 39) redirect https://docs.openmicroscopy.org/latest/ome-model/ - with Found to https://ome-model.readthedocs.io/en/stable/
00:58:23 (developers/GettingStarted/AdvancedClientDevelopment: line 366) redirect https://docs.openmicroscopy.org/latest/ome-model/ome-xml/ - with Found to https://ome-model.readthedocs.io/en/stable/ome-xml/
00:58:23 ( developers/Java: line 687) redirect https://docs.openmicroscopy.org/latest/ome-model/developers/roi.html - with Found to https://ome-model.readthedocs.io/en/stable/developers/roi.html
00:58:23 (developers/Model/Units: line 11) redirect https://docs.openmicroscopy.org/latest/ome-model/developers/ome-units.html - with Found to https://ome-model.readthedocs.io/en/stable/developers/ome-units.html
00:58:23 (developers/Model/Containers: line 8) redirect https://docs.openmicroscopy.org/latest/ome-model/developers/model-overview.html - with Found to https://ome-model.readthedocs.io/en/stable/developers/model-overview.html
00:58:23 (sysadmins/server-upgrade: line 17) redirect https://docs.openmicroscopy.org/latest/omero5.5/sysadmins/server-upgrade.html - permanently to https://docs.openmicroscopy.org/omero/5.5.1/sysadmins/server-upgrade.html
00:58:23 ( index: line 35) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/
00:58:23 (developers/Server/LightAdmins: line 204) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/ome/services/blitz/repo/RepositoryDaoImpl.html
00:58:23 (developers/Server/GraphsImpl: line 70) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/cmd/graphs/BaseGraphPolicyAdjuster.html
00:58:23 (developers/Server/GraphsImpl: line 48) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/cmd/graphs/BaseGraphTraversalProcessor.html
00:58:23 (developers/Server/GraphsImpl: line 77) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/cmd/graphs/ChildOptionsPolicy.html
00:58:23 (developers/Server/GraphsImpl: line 100) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/cmd/graphs/GraphHelper.html
00:58:23 (developers/Server/GraphsImpl: line 100) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/cmd/graphs/GraphRequestFactory.html
00:58:23 (developers/Server/GraphsImpl: line 100) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/cmd/graphs/GraphUtil.html
00:58:23 (developers/Server/GraphsImpl: line 48) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/cmd/graphs/NullGraphTraversalProcessor.html
00:58:23 (developers/Server/GraphsImpl: line 83) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/cmd/graphs/SkipHeadPolicy.html
00:58:23 (developers/Model/Containers: line 8) redirect https://docs.openmicroscopy.org/latest/ome-model/schemas/june-2016.html - with Found to https://ome-model.readthedocs.io/en/stable/schemas/june-2016.html
00:58:23 (developers/Server/GraphsImpl: line 86) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/cmd/graphs/SkipTailPolicy.html
00:58:23 (developers/Model/Units: line 16) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/model/ElectricPotentialI.html
00:58:23 (developers/Model/Units: line 17) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/model/FrequencyI.html
00:58:23 (developers/Model/Units: line 18) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/model/LengthI.html
00:58:23 (sysadmins/config: line 1664) redirect https://docs.openmicroscopy.org/latest/omero/sysadmins/customization.html#download-restrictions - with Found to https://omero.readthedocs.io/en/stable/sysadmins/customization.html#download-restrictions
00:58:23 (developers/Model/Units: line 19) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/model/PowerI.html
00:58:23 (developers/Model/Units: line 20) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/model/PressureI.html
00:58:23 (developers/Model/Units: line 22) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/model/TimeI.html
00:58:23 (developers/Model/Units: line 21) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/model/TemperatureI.html
00:58:23 ( index: line 35) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/
00:58:23 (developers/Modules/Api: line 126) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api.html
00:58:23 (developers/Modules/Api: line 45) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IAdmin.html
00:58:23 (developers/Modules/Api: line 50) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IConfig.html
00:58:23 (developers/Modules/Api: line 54) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IContainer.html
00:58:23 (developers/Modules/Api: line 57) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/ILdap.html
00:58:23 (developers/Modules/Api: line 61) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IMetadata.html
00:58:23 (developers/Modules/Api: line 67) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IProjection.html
00:58:23 (developers/Modules/Api: line 64) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IPixels.html
00:58:23 (developers/Modules/Api: line 70) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IQuery.html
00:58:23 (developers/Modules/Api: line 74) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IRenderingSettings.html
00:58:23 (developers/json-api: line 858) redirect https://docs.openmicroscopy.org/latest/ome-model/developers/screen-plate-well.html - with Found to https://ome-model.readthedocs.io/en/stable/developers/screen-plate-well.html
00:58:23 (developers/Modules/Api: line 77) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IRepositoryInfo.html
00:58:23 (developers/GettingStarted/AdvancedClientDevelopment: line 477) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IQuery.html#projection
00:58:23 (developers/Modules/Api: line 80) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IRoi.html
00:58:23 (developers/Modules/Api: line 89) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IShare.html
00:58:23 (developers/Modules/Api: line 86) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/ISession.html
00:58:23 (developers/Modules/Api: line 83) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IScript.html
00:58:23 (developers/Modules/Api: line 91) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/ITimeline.html
00:58:23 (developers/Modules/Api: line 94) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/ITypes.html
00:58:23 (developers/Modules/Api: line 111) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/RawFileStore.html
00:58:23 (developers/Modules/Api: line 97) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IUpdate.html
00:58:23 (developers/Modules/Api: line 114) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/RawPixelsStore.html
00:58:23 (developers/Modules/Api: line 16) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/ServiceFactory.html
00:58:23 (developers/Modules/Api: line 117) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/RenderingEngine.html
00:58:23 (developers/Modules/Api: line 121) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/ThumbnailStore.html
00:58:23 (developers/Server/GraphRequests: line 75) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/Chgrp2.html
00:58:23 (developers/PythonBlitzGateway: line 111) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/ServiceFactory.html#createRenderingEngine
00:58:23 (developers/PythonBlitzGateway: line 111) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/ServiceFactory.html#getQueryService
00:58:24 (developers/Server/GraphRequests: line 79) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/Chown2.html
00:58:24 (developers/Server/GraphRequests: line 83) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/Chmod2.html
00:58:24 (developers/Server/GraphRequests: line 88) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/Delete2.html
00:58:24 (developers/Server/GraphRequests: line 27) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/DiskUsage2.html
00:58:24 (developers/Server/GraphRequests: line 96) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/Duplicate.html
00:58:24 (developers/Server/GraphRequests: line 42) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/FindChildren.html
00:58:24 (developers/Server/GraphRequests: line 34) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/FindParents.html
00:58:24 (developers/Server/GraphRequests: line 59) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/GraphModify2.html
00:58:24 (developers/Server/GraphRequests: line 18) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/LegalGraphTargets.html
00:58:24 (developers/Server/GraphRequests: line 6) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/GraphQuery.html
00:58:24 (developers/Server/GraphRequests: line 104) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/SkipHead.html
00:58:24 (developers/Server/GraphRequests: line 71) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/graphs/ChildOption.html
00:58:24 (developers/GettingStarted: line 136) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model.html
00:58:24 (developers/Server/LightAdmins: line 22) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/AdminPrivilege.html
00:58:24 (developers/Tables: line 339) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/grid/Table.html
00:58:24 (developers/GettingStarted: line 161) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Annotation.html
00:58:24 (developers/GettingStarted: line 161) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/CommentAnnotation.html
00:58:24 (developers/GettingStarted: line 179) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Channel.html
00:58:24 (developers/GettingStarted: line 150) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Dataset.html
00:58:24 (developers/GettingStarted: line 161) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/DatasetAnnotationLink.html
00:58:24 (developers/GettingStarted: line 161) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/FileAnnotation.html
00:58:24 (developers/GettingStarted: line 150) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Image.html
00:58:24 (developers/GettingStarted: line 150) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/DatasetImageLink.html
00:58:24 (developers/Server/Permissions: line 382) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Permissions.html#canChown
00:58:24 (developers/Server/Permissions: line 380) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Permissions.html#canAnnotate
00:58:24 (developers/Server/Permissions: line 381) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Permissions.html#canChgrp
00:58:24 (developers/Server/Permissions: line 383) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Permissions.html#canDelete
00:58:24 ( sysadmins/index: line 15) redirect https://docs.openmicroscopy.org/latest/ome-model/specifications/ - with Found to https://ome-model.readthedocs.io/en/stable/specifications/
00:58:24 (developers/GettingStarted: line 150) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Project.html
00:58:24 (developers/Server/Permissions: line 384) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Permissions.html#canEdit
00:58:24 (developers/GettingStarted: line 179) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Pixels.html
00:58:24 (developers/Server/Permissions: line 385) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Permissions.html#canLink
00:58:24 (developers/GettingStarted: line 150) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/ProjectDatasetLink.html
00:58:24 (developers/GettingStarted: line 161) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/ProjectAnnotationLink.html
00:58:24 (developers/Server/LightAdmins: line 160) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/sys/EventContext.html
00:58:24 ( developers/Java: line 44) ok https://docs.openmicroscopy.org/omero-gateway/5.9.1/javadoc/omero/gateway/Gateway.html
00:58:24 ( developers/Java: line 52) ok https://docs.openmicroscopy.org/omero-gateway/5.9.1/javadoc//omero/gateway/facility/package-summary.html
00:58:24 ( developers/Java: line 52) ok https://docs.openmicroscopy.org/omero-gateway/5.9.1/javadoc/omero/gateway/facility/BrowseFacility.html
00:58:24 ( developers/Java: line 57) ok https://docs.openmicroscopy.org/omero-gateway/5.9.1/javadoc/omero/gateway/model/DataObject.html
00:58:24 (developers/Model/EveryObject: line 24) ok https://docs.openmicroscopy.org/omero-model/5.6.14/javadoc/ome/model/IEnum.html
00:58:24 (developers/Model/EveryObject: line 92) ok https://docs.openmicroscopy.org/omero-model/5.6.14/javadoc/ome/model/ILink.html
00:58:24 (developers/Model/EveryObject: line 54) ok https://docs.openmicroscopy.org/omero-model/5.6.14/javadoc/ome/model/IMutable.html
00:58:24 (developers/Model/EveryObject: line 425) ok https://docs.openmicroscopy.org/omero-model/5.6.14/javadoc/ome/model/units/ElectricPotential.html
00:58:24 (developers/Model/EveryObject: line 467) ok https://docs.openmicroscopy.org/omero-model/5.6.14/javadoc/ome/model/units/Frequency.html
00:58:24 (developers/Model/EveryObject: line 1190) ok https://docs.openmicroscopy.org/omero-model/5.6.14/javadoc/ome/model/units/Pressure.html
00:58:24 (developers/Model/EveryObject: line 580) ok https://docs.openmicroscopy.org/omero-model/5.6.14/javadoc/ome/model/units/Length.html
00:58:24 (developers/Model/EveryObject: line 114) ok https://docs.openmicroscopy.org/omero-model/5.6.14/javadoc/ome/model/units/Power.html
00:58:24 (developers/Model/EveryObject: line 2238) ok https://docs.openmicroscopy.org/omero-model/5.6.14/javadoc/ome/model/units/Time.html
00:58:24 (developers/Model/EveryObject: line 1190) ok https://docs.openmicroscopy.org/omero-model/5.6.14/javadoc/ome/model/units/Temperature.html
00:58:24 (developers/Server/LightAdmins: line 219) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/logic/AdminImpl.html
00:58:24 (developers/Server/LightAdmins: line 219) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/security/basic/BasicACLVoter.html
00:58:24 (developers/Server/LightAdmins: line 242) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/security/basic/LightAdminPrivilegesCleanup.html
00:58:24 (developers/Server/LightAdmins: line 219) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/security/basic/OmeroInterceptor.html
00:58:24 (developers/Server/GraphsImpl: line 11) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/GraphPathBean.html
00:58:24 (developers/Server/GraphsImpl: line 11) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/GraphPathReport.html
00:58:24 (developers/Server/LightAdmins: line 102) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/security/basic/LightAdminPrivilegesSecurityFilter.html
00:58:24 (developers/Server/GraphsImpl: line 60) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/GraphPolicy.html
00:58:24 (developers/Server/GraphsImpl: line 22) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/GraphTraversal.html
00:58:24 (developers/Server/GraphsImpl: line 32) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/GraphTraversal.Processor.html
00:58:24 (developers/Server/GraphsImpl: line 60) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/GraphPolicyRule.html
00:58:24 (developers/Server/GraphsImpl: line 32) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/GraphTraversal.PlanExecutor.html
00:58:24 (developers/Server/GraphsImpl: line 88) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/GraphPolicyRulePredicate.html
00:58:24 (developers/Server/GraphsImpl: line 88) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/PermissionsPredicate.html
00:58:24 (developers/Server/GraphsImpl: line 88) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/GroupPredicate.html
00:58:24 (developers/Server/GraphsImpl: line 42) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/ModelObjectSequencer.html
00:58:24 (developers/Server/LightAdmins: line 236) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/util/DBUserCheck.html
00:58:24 ( users/history: line 986) ok https://docs.openmicroscopy.org/omero/5.3.0/developers/whatsnew.html
00:58:24 (sysadmins/whatsnew: line 16) redirect https://docs.openmicroscopy.org/omero/5.5/sysadmins/whatsnew.html - permanently to https://docs.openmicroscopy.org/omero/5.5.1/sysadmins/whatsnew.html
00:58:24 (developers/Modules/Api: line 223) ok https://docs.oracle.com/javase/tutorial/java/annotations/basics.html
00:58:24 (users/cli/import-target: line 157) ok https://docs.oracle.com/javase/7/docs/api/java/util/regex/Pattern.html
00:58:24 (sysadmins/server-ldap: line 318) ok https://docs.oracle.com/javase/jndi/tutorial/ldap/referral/jndi.html
00:58:24 (sysadmins/config: line 811) ok https://docs.oracle.com/javase/jndi/tutorial/ldap/connect/create.html
00:58:24 (sysadmins/config: line 924) ok https://docs.oracle.com/javase/tutorial/jndi/newstuff/readtimeout.html
00:58:24 (sysadmins/config: line 1011) ok https://docs.python.org/3/library/logging.html#levels
00:58:24 (sysadmins/dropbox: line 152) ok https://docs.python.org/2.7/library/site.html
00:58:25 (sysadmins/config: line 2205) redirect https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples - with Found to https://omero.readthedocs.io/en/stable/sysadmins/grid.html#deployment-examples
00:58:25 (sysadmins/version-requirements: line 248) ok https://download.postgresql.org/pub/repos/yum/12/redhat/rhel-9-x86_64/
00:58:25 (developers/testing: line 342) ok https://docs.pytest.org/en/latest/how-to/usage.html
00:58:25 (developers/testing: line 45) ok https://docs.pytest.org/en/latest/
00:58:25 (sysadmins/python3-migration: line 84) ok https://downloads.openmicroscopy.org
00:58:25 (sysadmins/unix/server-install-homebrew: line 204) redirect https://downloads.openmicroscopy.org/latest/omero/artifacts/ - permanently to https://downloads.openmicroscopy.org/omero/5.6.11/artifacts/
00:58:25 (sysadmins/UpgradeCheck: line 29) redirect https://downloads.openmicroscopy.org/latest/omero - permanently to https://downloads.openmicroscopy.org/omero/5.6.11/
00:58:25 (developers/GettingStarted: line 56) redirect https://downloads.openmicroscopy.org/latest/omero5.5/ - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/
00:58:25 (developers/analysis: line 12) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/ - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/api/
00:58:25 ( index: line 35) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/ - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/
00:58:25 (developers/PythonBlitzGateway: line 91) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/omero/omero.gateway.html - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/omero/omero.gateway.html
00:58:25 (developers/PythonBlitzGateway: line 171) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/omero/omero.gateway.html#omero.gateway.ImageWrapper - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/omero/omero.gateway.html#omero.gateway.ImageWrapper
00:58:25 (developers/PythonBlitzGateway: line 19) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/omero/omero.gateway.html#omero.gateway._BlitzGateway - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/omero/omero.gateway.html#omero.gateway._BlitzGateway
00:58:25 (developers/Server/Aop: line 77) redirect https://docs.spring.io/spring/docs/2.0.x/reference/aop.html - permanently to https://docs.spring.io/spring-framework/docs/2.0.x/reference/aop.html
00:58:25 (developers/Web/WebGateway: line 15) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/omeroweb/omeroweb.webgateway.html#module-omeroweb.webgateway.urls - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/omeroweb/omeroweb.webgateway.html#module-omeroweb.webgateway.urls
00:58:25 (developers/PythonBlitzGateway: line 123) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/omero/omero.gateway.html#omero.gateway._BlitzGateway._createProxies - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/omero/omero.gateway.html#omero.gateway._BlitzGateway._createProxies
00:58:25 (developers/GettingStarted/AdvancedClientDevelopment: line 477) ok https://downloads.openmicroscopy.org/presentations/2017/Team-Training/Hibernate/
00:58:25 (sysadmins/ansible-docker: line 29) ok https://downloads.openmicroscopy.org/presentations/2020/Dundee/Workshops/OME2020-OMERO-Installation
00:58:25 (developers/Server/HowToCreateAService: line 101) redirect https://docs.spring.io/spring/docs/2.0.x/reference/beans.html#beans-factory-scopes-singleton - permanently to https://docs.spring.io/spring-framework/docs/2.0.x/reference/beans.html#beans-factory-scopes-singleton
00:58:25 (sysadmins/version-requirements: line 195) ok https://download.rockylinux.org/pub/rocky/9/BaseOS/x86_64/os/Packages/
00:58:25 (sysadmins/server-ldap: line 322) ok https://en.wikipedia.org/wiki/Active_Directory
00:58:25 (developers/Server/Aop: line 86) ok https://en.wikipedia.org/wiki/Aspect-oriented_programming
00:58:26 (sysadmins/in-place-import: line 288) ok https://en.wikipedia.org/wiki/Hard_link
00:58:26 (developers/GettingStarted/AdvancedClientDevelopment: line 78) ok https://en.wikipedia.org/wiki/Interface_description_language
00:58:26 (sysadmins/server-ldap: line 4) ok https://en.wikipedia.org/wiki/Lightweight_Directory_Access_Protocol
00:58:26 (developers/Model/Units: line 185) ok https://en.wikipedia.org/wiki/International_System_of_Units
00:58:26 (sysadmins/server-backup-and-restore: line 216) ok https://en.wikipedia.org/wiki/List_of_backup_software
00:58:26 (sysadmins/config: line 2835) ok https://en.wikipedia.org/wiki/List_of_tz_database_time_zones
00:58:26 (sysadmins/server-syslog: line 4) ok https://en.wikipedia.org/wiki/Syslog
00:58:26 (developers/GettingStarted/AdvancedClientDevelopment: line 56) ok https://en.wikipedia.org/wiki/Fallacies_of_Distributed_Computing
00:58:26 (developers/Model/Units: line 183) ok https://en.wikipedia.org/wiki/Units_of_measurement
00:58:26 (developers/Model/Units: line 184) ok https://en.wikipedia.org/wiki/System_of_measurement
00:58:26 (sysadmins/version-requirements: line 103) ok https://endoflife.date/centos
00:58:26 (sysadmins/version-requirements: line 99) ok https://endoflife.date/rhel
00:58:26 (sysadmins/version-requirements: line 119) ok https://endoflife.date/rocky-linux
00:58:27 (developers/index: line 28) redirect https://drive.google.com/file/d/1ld6s678JWRF15qUT4_3LyTE4IGYh-wRZ/ - with Found to https://drive.google.com/file/d/1ld6s678JWRF15qUT4_3LyTE4IGYh-wRZ/edit
00:58:27 (sysadmins/limitations: line 49) ok https://forum.image.sc/t/pixeldata-threads-and-pyramid-generation-issues/49794
00:58:27 (developers/Server/Aop: line 25) redirect https://eclipse.org/aspectj/ - permanently to https://eclipse.dev/aspectj/
00:58:27 (sysadmins/system-migration: line 39) ok https://forum.image.sc/tag/omero
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00:58:27 (sysadmins/python3-migration: line 52) ok https://galaxy.ansible.com/ome
00:58:27 (sysadmins/system-migration: line 33) ok https://galaxy.ansible.com/ui/standalone/namespaces/5249/
00:58:27 (sysadmins/system-migration: line 33) ok https://galaxy.ansible.com/ui/standalone/roles/ome/omero_server/
00:58:27 (sysadmins/system-migration: line 33) ok https://galaxy.ansible.com/ui/standalone/roles/ome/omero_web/
00:58:28 (sysadmins/limitations: line 61) ok https://github.com/BIOP/ijp-kheops
00:58:28 (sysadmins/limitations: line 61) ok https://github.com/AllenCellModeling/aicsimageio
00:58:28 ( developers/Web: line 73) ok https://github.com/German-BioImaging/omero-autotag
00:58:28 (sysadmins/unix/server-install-homebrew: line 27) ok https://github.com/Homebrew/brew/blob/master/docs/Installation.md
00:58:28 ( developers/Web: line 73) ok https://github.com/German-BioImaging/omero-tagsearch
00:58:28 (developers/Tables: line 18) ok https://github.com/PyTables/PyTables/releases/tag/v3.9.1
00:58:28 (developers/scripts/index: line 55) ok https://github.com/QBI-Microscopy/omero-user-scripts
00:58:28 (developers/Python: line 81) ok https://github.com/TheJacksonLaboratory/ezomero
00:58:28 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 173) ok https://github.com/adamchainz/django-cors-headers
00:58:29 (developers/scripts/index: line 53) ok https://github.com/aherbert/omero-user-scripts
00:58:29 (developers/scripts/index: line 57) ok https://github.com/dsudar/OMEROscripts
00:58:29 (developers/Python: line 24) ok https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/tag/20240202
00:58:29 (developers/scripts/index: line 47) ok https://github.com/glencoesoftware/omero-user-scripts
00:58:29 (sysadmins/server-upgrade: line 74) redirect https://github.com/glencoesoftware/omero-ms-image-region/tree/v0.5.1/src/dist/MemoFileRegenerationReadMe.md - permanently to https://github.com/glencoesoftware/omero-ms-image-region/blob/v0.5.1/src/dist/MemoFileRegenerationReadMe.md
00:58:29 (developers/Python: line 33) ok https://github.com/glencoesoftware/zeroc-ice-py-macos-universal2/releases/tag/20240131
00:58:29 (developers/Python: line 42) redirect https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl - with Found to https://objects.githubusercontent.com/github-production-release-asset-2e65be/543662060/9ce94eef-3ec3-4651-a4ac-af4ecb7b5d87?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=releaseassetproduction%2F20240713%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20240713T005829Z&X-Amz-Expires=300&X-Amz-Signature=d9f235a28e949be85a0a2bfbfa1270c176f1b220dd4b6cfbc65411c08cdd2279&X-Amz-SignedHeaders=host&actor_id=0&key_id=0&repo_id=543662060&response-content-disposition=attachment%3B%20filename%3Dzeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl&response-content-type=application%2Foctet-stream
00:58:29 (developers/Python: line 27) ok https://github.com/glencoesoftware/zeroc-ice-py-win-x86_64/releases/tag/20240325
00:58:30 (developers/Python: line 30) ok https://github.com/glencoesoftware/zeroc-ice-py-macos-x86_64/releases/tag/20231130
00:58:30 (sysadmins/version-requirements: line 387) ok https://github.com/glencoesoftware/zeroc-ice-rhel9-x86_64
00:58:30 (sysadmins/version-requirements: line 388) ok https://github.com/glencoesoftware/zeroc-ice-ubuntu2204-x86_64
00:58:30 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 230) ok https://github.com/jazzband/django-redis
00:58:30 (sysadmins/config: line 2307) redirect https://github.com/ottoyiu/django-cors-headers - permanently to https://github.com/adamchainz/django-cors-headers
00:58:30 (sysadmins/limitations: line 61) ok https://github.com/libvips/libvips
00:58:30 (developers/scripts/index: line 49) ok https://github.com/openmicroscopy/omero-example-scripts
00:58:30 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 105) ok https://github.com/jazzband/django-redis/
00:58:31 (sysadmins/unix/server-install-homebrew: line 382) redirect https://github.com/mxcl/homebrew/wiki/Bug-Fixing-Checklist - with Found to https://github.com/Homebrew/legacy-homebrew
00:58:31 (developers/scripts/index: line 51) ok https://github.com/ppouchin/omero-user-scripts
00:58:31 (developers/build-system: line 12) ok https://gradle.org/
00:58:31 ( users/history: line 359) ok https://gradle.org
00:58:31 (sysadmins/config: line 1859) redirect https://google.github.io/guava/releases/27.1-jre/api/docs/com/google/common/cache/CacheBuilderSpec.html - permanently to https://guava.dev/releases/27.1-jre/api/docs/com/google/common/cache/CacheBuilderSpec.html
00:58:31 (sysadmins/server-setup-examples: line 125) ok https://idr.openmicroscopy.org/about/studies
00:58:31 (sysadmins/server-setup-examples: line 125) ok https://idr.openmicroscopy.org/about/deployment
00:58:31 (sysadmins/python3-migration: line 59) ok https://hub.docker.com/u/openmicroscopy
00:58:31 (users/clients-overview: line 18) broken https://java.com/ - 403 Client Error: Forbidden for url: https://www.java.com/en/
00:58:32 (sysadmins/server-setup-examples: line 125) ok https://idr.openmicroscopy.org
00:58:32 (developers/logging: line 4) ok https://logback.qos.ch/
00:58:32 (developers/GettingStarted: line 60) redirect https://jenkins.io - permanently to https://www.jenkins.io/
00:58:32 (developers/logging: line 32) ok https://logback.qos.ch/manual/configuration.html#autoScan
00:58:32 ( users/history: line 546) ok https://idr.openmicroscopy.org/
00:58:32 (sysadmins/config: line 502) ok https://jdbc.postgresql.org/documentation/use/#connecting-to-the-database
00:58:32 (developers/Modules/Search: line 4) ok https://lucene.apache.org
00:58:32 (developers/Modules/Search: line 267) ok https://lucene.apache.org/core/3_6_0/queryparsersyntax.html
00:58:32 (sysadmins/troubleshooting: line 405) ok https://matplotlib.org/
00:58:32 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 208) ok https://nginx.org/en/docs/http/configuring_https_servers.html
00:58:32 (sysadmins/public: line 244) ok https://nginx.org/
00:58:32 (sysadmins/server-performance: line 201) ok https://metrics.dropwizard.io/
00:58:32 (sysadmins/version-requirements: line 454) ok https://nginx.org/en/download.html
00:58:32 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 324) ok https://nginx.org/en/docs/http/ngx_http_proxy_module.html#proxy_buffering
00:58:32 (sysadmins/limitations: line 107) ok https://ngff.openmicroscopy.org/latest/
00:58:33 (sysadmins/restricted-admins: line 248) ok https://omero-guides.readthedocs.io/en/latest/example.html
00:58:33 ( index: line 29) ok https://omero-guides.readthedocs.io/en/latest/
00:58:33 (sysadmins/restricted-admins: line 138) ok https://omero-guides.readthedocs.io/en/latest/download/docs/index.html
00:58:33 (developers/Model/KeyValuePairs: line 87) ok https://omero-guides.readthedocs.io/en/latest/introduction/docs/annotate.html
00:58:33 (sysadmins/public: line 184) ok https://omero-guides.readthedocs.io/en/latest/figure/docs/index.html
00:58:33 ( sysadmins/index: line 5) ok https://omero-guides.readthedocs.io/en/latest/example_facility_manager.html
00:58:33 (sysadmins/server-permissions: line 144) ok https://omero-guides.readthedocs.io/en/latest/introduction/docs/data-management.html
00:58:33 (sysadmins/restricted-admins: line 299) ok https://omero-guides.readthedocs.io/en/latest/introduction/docs/data-management.html#movedowners
00:58:33 (developers/Web/WebGateway: line 9) ok https://omero-guides.readthedocs.io/en/latest/figure/docs/omero_figure.html
00:58:33 (sysadmins/server-permissions: line 101) ok https://omero-guides.readthedocs.io/en/latest/introduction/docs/data-publication.html
00:58:33 (sysadmins/restricted-admins: line 315) ok https://omero-guides.readthedocs.io/en/latest/introduction/docs/data-management.html#manage-images-in-datasets-projects
00:58:33 (sysadmins/restricted-admins: line 138) ok https://omero-guides.readthedocs.io/en/latest/iviewer/docs/index.html
00:58:33 (sysadmins/public: line 156) redirect https://omero.lifesci.dundee.ac.uk - with Found to https://omero.lifesci.dundee.ac.uk/webclient/login/?url=%2Fwebclient%2F
00:58:33 (sysadmins/public: line 128) redirect https://omero.lifesci.dundee.ac.uk/pub/schleicher-et-al-2017 - with Found to https://omero.lifesci.dundee.ac.uk/webclient/login/?url=%2Fwebclient%2F%3Fshow%3Dproject-27936
00:58:33 (sysadmins/public: line 198) redirect https://omero.lifesci.dundee.ac.uk/webclient/?show=project-27917 - with Found to https://omero.lifesci.dundee.ac.uk/webclient/login/?url=%2Fwebclient%2F%3Fshow%3Dproject-27917
00:58:33 (sysadmins/public: line 198) redirect https://omero.lifesci.dundee.ac.uk/webclient/?show=project-27920 - with Found to https://omero.lifesci.dundee.ac.uk/webclient/login/?url=%2Fwebclient%2F%3Fshow%3Dproject-27920
00:58:33 (sysadmins/public: line 221) redirect https://omero.lifesci.dundee.ac.uk/webclient/?show=project-27936 - with Found to https://omero.lifesci.dundee.ac.uk/webclient/login/?url=%2Fwebclient%2F%3Fshow%3Dproject-27936
00:58:33 (sysadmins/cli/light-admins: line 4) ok https://omero-guides.readthedocs.io/en/latest/introduction/docs/group-user-management.html
00:58:34 (sysadmins/public: line 214) redirect https://omero.lifesci.dundee.ac.uk/webclient/?show=tag-364188 - with Found to https://omero.lifesci.dundee.ac.uk/webclient/login/?url=%2Fwebclient%2F%3Fshow%3Dtag-364188
00:58:34 (developers/index: line 131) ok https://omero-insight.readthedocs.io/en/latest/
00:58:34 (sysadmins/restricted-admins: line 191) ok https://omero-guides.readthedocs.io/en/latest/upload/docs/import-desktop-client.html#import-for-another-user
00:58:34 (sysadmins/ansible-docker: line 31) ok https://omero.readthedocs.io/en/stable/sysadmins/system-requirements.html
00:58:34 (developers/Web/CreateApp: line 35) ok https://omero.readthedocs.io/en/latest/developers/Python.html
00:58:34 (sysadmins/ansible-docker: line 4) ok https://omero.readthedocs.io/en/stable/sysadmins
00:58:34 (sysadmins/ansible-docker: line 30) ok https://omero.readthedocs.io/en/stable/sysadmins/unix/server-centos7-ice36.html
00:58:34 (developers/Python: line 7) redirect https://omero-py.readthedocs.io/ - with Found to https://omero-py.readthedocs.io/en/stable/
00:58:34 (sysadmins/ansible-docker: line 160) ok https://omero.readthedocs.io/en/stable/sysadmins/unix/server-centos7-ice36.html#configuring-omero-server
00:58:35 (developers/Search/FileParsers: line 24) ok https://pdfbox.apache.org
00:58:35 (sysadmins/version-requirements: line 308) ok https://peps.python.org/pep-0619/
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00:58:35 (developers/Python: line 7) ok https://pypi.org
00:58:35 (sysadmins/limitations: line 61) ok https://pypi.org/project/tifffile/
00:58:35 (sysadmins/client-server-ssl: line 52) ok https://pypi.org/project/zeroc-icecertutils/
00:58:35 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 344) ok https://pypi.org/project/futures
00:58:35 (developers/Web/ReleaseApp: line 21) redirect https://packaging.python.org/guides/distributing-packages-using-setuptools/ - with Found to https://packaging.python.org/en/latest/guides/distributing-packages-using-setuptools/
00:58:35 (sysadmins/server-upgrade: line 331) ok https://pypi.org/project/omero-certificates/
00:58:35 (sysadmins/limitations: line 61) ok https://qupath.github.io/
00:58:35 (sysadmins/ansible-docker: line 137) ok https://pypi.org/search/?q=omero
00:58:35 (developers/cli/extending: line 16) ok https://pypi.org/search/?q=omero+cli
00:58:35 (developers/Server/Aop: line 12) ok https://spring.io
00:58:36 (sysadmins/server-ldap: line 56) ok https://spring.io/projects/spring-ldap/
00:58:36 (sysadmins/omeroweb-upgrade: line 124) ok https://redis.io/
00:58:36 (sysadmins/unix/server-install-homebrew: line 432) ok https://stackoverflow.com/questions/25970132/pg-tblspc-missing-after-installation-of-latest-version-of-os-x-yosemite-or-el
00:58:36 (developers/testing: line 430) redirect https://pytest.org/ - with Found to https://docs.pytest.org/en/8.2.x/
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00:58:36 (sysadmins/omeroweb-upgrade: line 4) ok https://trello.com/b/4EXb35xQ/getting-started
00:58:36 (sysadmins/version-requirements: line 454) ok https://trac.nginx.org/nginx/roadmap
00:58:36 (sysadmins/server-performance: line 160) ok https://visualvm.github.io/
00:58:37 (sysadmins/server-ldap: line 336) redirect https://technet.microsoft.com/en-us/library/cc728188(v=ws.10).aspx - permanently to https://learn.microsoft.com/en-us/previous-versions/windows/it-pro/windows-server-2003/cc728188(v=ws.10)?redirectedfrom=MSDN
00:58:37 (sysadmins/troubleshooting: line 407) redirect https://pillow.readthedocs.org - with Found to https://pillow.readthedocs.io/en/stable/
00:58:37 (sysadmins/ansible-docker: line 26) ok https://www.ansible.com/
00:58:37 (sysadmins/version-requirements: line 88) ok https://www.centos.org/
00:58:37 (sysadmins/server-setup-examples: line 68) redirect https://www.biozentrum.unibas.ch/imcf - permanently to https://www.biozentrum.unibas.ch/facilities/technology-platforms/technology-platforms-a-z/overview/unit/imaging-core-facility
00:58:38 ( developers/Cpp: line 291) redirect https://www.cmake.org/cmake/help/v3.0/ - permanently to https://cmake.org/cmake/help/v3.0/
00:58:38 ( developers/Cpp: line 141) redirect https://www.cmake.org/cmake/help/documentation.html - permanently to https://cmake.org/documentation/
00:58:38 (sysadmins/unix/install-web/web-deployment: line 11) redirect https://wsgi.readthedocs.org - with Found to https://wsgi.readthedocs.io/en/latest/
00:58:38 ( developers/Web: line 9) ok https://www.djangoproject.com/
00:58:38 (sysadmins/unix/server-installation: line 180) ok https://wiki.ubuntu.com/Releases
00:58:38 ( developers/Cpp: line 291) redirect https://www.cmake.org/cmake/help/v3.0/manual/cmake-variables.7.html#variables-that-change-behavior - permanently to https://cmake.org/cmake/help/v3.0/manual/cmake-variables.7.html#variables-that-change-behavior
00:58:39 (sysadmins/unix/server-postgresql: line 34) ok https://www.enterprisedb.com/
00:58:39 (developers/Clients/ImportLibrary: line 32) ok https://www.glencoesoftware.com/
00:58:39 (sysadmins/limitations: line 61) ok https://www.glencoesoftware.com/blog/2019/12/09/converting-whole-slide-images-to-OME-TIFF.html
00:58:39 (developers/Python: line 12) ok https://www.glencoesoftware.com/blog/2023/12/08/ice-binaries-for-omero.html
00:58:39 (sysadmins/limitations: line 61) ok https://www.glencoesoftware.com/products/ngff-converter/
00:58:39 (sysadmins/server-setup-examples: line 7) redirect https://www.cellnanos.uni-osnabrueck.de/en/startpage.html - temporarily to https://www.cellnanos.uni-osnabrueck.de/en/home.html
00:58:39 (developers/index: line 28) ok https://www.gnu.org/licenses/licenses.html#GPL
00:58:39 (sysadmins/system-requirements: line 56) ok https://www.cpubenchmark.net/singleThread.html#server-thread
00:58:40 ( users/history: line 845) ok https://www.janelia.org/
00:58:40 (developers/scripts/matlab-scripts: line 10) ok https://www.mathworks.com/help/matlab/matlab_external/install-the-matlab-engine-for-python.html
00:58:40 (sysadmins/server-setup-examples: line 100) redirect https://www.gred-clermont.fr - permanently to https://www.igred.fr/
00:58:40 (developers/Server/Context: line 21) ok https://www.martinfowler.com/eaaCatalog/unitOfWork.html
00:58:40 (sysadmins/server-security: line 31) ok https://www.iana.org/assignments/service-names-port-numbers/service-names-port-numbers.xml
00:58:40 (developers/Clients/ImportLibrary: line 31) ok https://www.openmicroscopy.org
00:58:40 ( users/history: line 1173) ok https://www.openmicroscopy.org/2015/12/07/bio-formats-5-1-7.html
00:58:40 ( users/history: line 1144) ok https://www.openmicroscopy.org/2016/02/15/bio-formats-5-1-8.html
00:58:40 ( users/history: line 1099) ok https://www.openmicroscopy.org/2016/04/18/bio-formats-5-1-9.html
00:58:40 ( users/history: line 1014) ok https://www.openmicroscopy.org/2016/05/09/bio-formats-5-1-10.html
00:58:40 ( users/history: line 918) ok https://www.openmicroscopy.org/2017/04/13/bio-formats-5-4-1.html
00:58:40 ( users/history: line 901) ok https://www.openmicroscopy.org/2017/05/08/bio-formats-5-5-0.html
00:58:40 ( users/history: line 867) ok https://www.openmicroscopy.org/2017/06/15/bio-formats-5-5-2.html
00:58:40 ( users/history: line 833) ok https://www.openmicroscopy.org/2017/07/05/bio-formats-5-5-3.html
00:58:40 ( users/history: line 817) ok https://www.openmicroscopy.org/2017/09/20/bio-formats-5-7-1.html
00:58:40 (sysadmins/limitations: line 61) ok https://www.openmicroscopy.org/2018/11/29/ometiffpyramid.html
00:58:40 (developers/Model/StructuredAnnotations: line 62) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2013-06/SA_xsd.html#Annotation
00:58:40 ( index: line 39) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome.html
00:58:40 (users/community-resources: line 14) ok https://www.openmicroscopy.org/bio-formats
00:58:40 (users/community-resources: line 23) redirect https://www.openmicroscopy.org/community/ - permanently to https://www.openmicroscopy.org/community/index.php
00:58:40 (sysadmins/server-performance: line 149) ok https://www.openmicroscopy.org/community/viewtopic.php?f=4&t=7400
00:58:40 (sysadmins/dropbox: line 152) ok https://www.openmicroscopy.org/community/viewtopic.php?f=4&t=7810#p15910
00:58:40 (sysadmins/server-performance: line 187) ok https://www.nagios.org/
00:58:40 (sysadmins/server-ldap: line 315) ok https://www.openmicroscopy.org/community/viewtopic.php?f=5&t=14
00:58:40 (sysadmins/troubleshooting: line 282) ok https://www.openmicroscopy.org/community/viewtopic.php?f=5&t=7537
00:58:40 (sysadmins/unix/server-installation: line 452) ok https://www.openmicroscopy.org/community/viewtopic.php?f=5&t=360#p922
00:58:40 (sysadmins/server-upgrade: line 255) ok https://www.openmicroscopy.org/community/viewtopic.php?f=5&t=7778
00:58:40 (sysadmins/troubleshooting: line 284) ok https://www.openmicroscopy.org/community/viewtopic.php?f=6&t=7722&p=15264&hilit=CheckedPath#p15264
00:58:40 ( users/index: line 59) ok https://www.openmicroscopy.org/explore/
00:58:40 (users/clients-overview: line 28) ok https://www.openmicroscopy.org/omero/analyze
00:58:40 (sysadmins/ansible-docker: line 32) ok https://www.openmicroscopy.org/omero/apps/
00:58:40 (developers/Matlab: line 12) ok https://www.openmicroscopy.org/omero/downloads/
00:58:40 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 77) ok https://www.openmicroscopy.org/omero/figure/
00:58:40 (sysadmins/ansible-docker: line 25) ok https://www.openmicroscopy.org/omero/institution/getting-started.html
00:58:40 (sysadmins/public: line 97) ok https://www.openmicroscopy.org/omero/iviewer/
00:58:40 ( users/index: line 54) ok https://www.openmicroscopy.org/omero/new
00:58:41 ( users/index: line 54) ok https://www.openmicroscopy.org/omero/scientists
00:58:41 (sysadmins/server-security: line 21) ok https://www.openmicroscopy.org/security/
00:58:41 ( index: line 28) ok https://www.openmicroscopy.org/security/advisories/
00:58:41 ( users/history: line 1720) ok https://www.openmicroscopy.org/security/advisories/2012-SV1-ldap-authentication
00:58:41 ( users/history: line 1552) ok https://www.openmicroscopy.org/security/advisories/2014-SV1-unicode-passwords
00:58:41 ( users/history: line 1553) ok https://www.openmicroscopy.org/security/advisories/2014-SV2-empty-passwords
00:58:41 ( users/history: line 1513) ok https://www.openmicroscopy.org/security/advisories/2014-SV3-csrf
00:58:41 ( users/history: line 1514) ok https://www.openmicroscopy.org/security/advisories/2014-SV4-poodle
00:58:41 ( users/history: line 1058) ok https://www.openmicroscopy.org/security/advisories/2016-SV1-cleanse
00:58:41 ( users/history: line 1043) ok https://www.openmicroscopy.org/security/advisories/2016-SV2-share
00:58:41 ( users/history: line 996) ok https://www.openmicroscopy.org/security/advisories/2017-SV1-filename
00:58:41 ( users/history: line 1000) ok https://www.openmicroscopy.org/security/advisories/2017-SV2-edit-rw
00:58:41 ( users/history: line 1003) ok https://www.openmicroscopy.org/security/advisories/2017-SV3-delete-script
00:58:41 (developers/Server/ExtendingOmero: line 329) redirect https://www.nginx.com/resources/wiki/ - permanently to https://docs.nginx.com
00:58:41 ( users/history: line 822) ok https://www.openmicroscopy.org/security/advisories/2017-SV4-guest-user
00:58:41 (sysadmins/server-upgrade: line 134) ok https://www.openmicroscopy.org/security/advisories/2017-SV5-filename-2
00:58:41 (developers/Modules/Api: line 28) ok https://www.openmicroscopy.org/support/
00:58:41 ( users/history: line 607) ok https://www.openmicroscopy.org/security/advisories/2017-SV6-job-file-link
00:58:41 (sysadmins/in-place-import: line 292) ok https://www.openwall.com/lists/kernel-hardening/2012/02/21/20
00:58:41 (sysadmins/server-backup-and-restore: line 162) redirect https://www.nongnu.org/rdiff-backup/docs.html - with Found to https://rdiff-backup.net/
00:58:41 (developers/Server/ExtendingOmero: line 6) redirect https://www.openmicroscopy.org/forums - permanently to https://forum.image.sc/c/data-management/29
00:58:41 (sysadmins/version-requirements: line 446) redirect https://www.oracle.com/technetwork/java/javase/downloads/index-jsp-138363.html - permanently to https://www.oracle.com/java/technologies/downloads/?er=221886
00:58:41 (sysadmins/unix/server-installation: line 124) redirect https://www.oracle.com/technetwork/java/javase/downloads/index.html - permanently to https://www.oracle.com/java/technologies/downloads/?er=221886
00:58:42 (sysadmins/version-requirements: line 395) ok https://www.oracle.com/technetwork/java/eol-135779.html
00:58:42 (sysadmins/unix/server-postgresql: line 145) redirect https://www.postgresql.org/docs/current/interactive/client-authentication.html - permanently to https://www.postgresql.org/docs/current/client-authentication.html
00:58:42 (sysadmins/server-backup-and-restore: line 112) ok https://www.postgresql.org/docs/10/backup.html
00:58:42 (developers/Server: line 32) redirect https://www.oracle.com/technetwork/java/javaee/ejb/index.html - permanently to https://www.oracle.com/java/technologies/enterprise-javabeans-technology.html
00:58:42 (sysadmins/unix/server-postgresql: line 140) redirect https://www.postgresql.org/docs/current/interactive/index.html - permanently to https://www.postgresql.org/docs/current/index.html
00:58:42 (sysadmins/version-requirements: line 264) ok https://www.postgresql.org/download/
00:58:42 ( users/cli/index: line 4) ok https://www.python.org
00:58:42 (developers/GettingStarted: line 126) ok https://www.pgadmin.org/
00:58:42 (sysadmins/unix/server-postgresql: line 12) ok https://www.postgresql.org/support/versioning/
00:58:43 (sysadmins/unix/server-postgresql: line 143) redirect https://www.postgresql.org/docs/current/interactive/runtime-config-connection.html - permanently to https://www.postgresql.org/docs/current/runtime-config-connection.html
00:58:43 (sysadmins/version-requirements: line 293) redirect https://www.python.org/dev/peps/pep-0537/ - with Found to https://peps.python.org/pep-0537/
00:58:43 (sysadmins/version-requirements: line 288) redirect https://www.python.org/dev/peps/pep-0494/ - with Found to https://peps.python.org/pep-0494/
00:58:43 (sysadmins/config: line 1446) ok https://www.quartz-scheduler.org/api/1.8.6/org/quartz/CronExpression.html
00:58:43 (developers/logging: line 4) ok https://www.slf4j.org
00:58:43 (developers/Web/CSRF: line 14) ok https://www.rfc-editor.org/rfc/rfc2616.html#section-9.1.1
00:58:43 (sysadmins/config: line 2395) ok https://www.w3.org/TR/referrer-policy/#referrer-policies
00:58:43 (developers/Web/LinkingFromWebclient: line 86) ok https://www.ncbi.nlm.nih.gov/protein/000397
00:58:43 (developers/GettingStarted/AdvancedClientDevelopment: line 19) ok https://www.scons.org
00:58:43 (sysadmins/server-syslog: line 52) ok https://www.splunk.com/
00:58:44 (sysadmins/version-requirements: line 254) redirect https://yum.postgresql.org/14/redhat/rhel-9-x86_64/ - permanently to https://download.postgresql.org/pub/repos/yum/14/redhat/rhel-9-x86_64/
00:58:44 (sysadmins/version-requirements: line 260) redirect https://yum.postgresql.org/16/redhat/rhel-9-x86_64/ - permanently to https://download.postgresql.org/pub/repos/yum/16/redhat/rhel-9-x86_64/
00:58:44 (sysadmins/version-requirements: line 257) redirect https://yum.postgresql.org/15/redhat/rhel-9-x86_64/ - permanently to https://download.postgresql.org/pub/repos/yum/15/redhat/rhel-9-x86_64/
00:58:44 ( developers/Cpp: line 4) ok https://zeroc.com
00:58:45 (developers/Python: line 7) ok https://zeroc.com/ice/downloads/3.6
00:58:45 (sysadmins/unix/server-installation: line 190) redirect https://zeroc.com/downloads/ice - temporarily to https://zeroc.com/ice/downloads/3.7
00:58:45 ( developers/Web: line 29) redirect https://zeroc.com/products/ice - permanently to https://zeroc.com/ice
00:58:45 Adding redirects:
00:58:45 build finished with problems.
00:58:45 make: *** [../Makefile:159: linkcheck] Error 1
00:58:45 Build step 'Execute shell' marked build as failure
00:58:45 Archiving artifacts
00:58:46 Finished: FAILURE
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