00:57:39 Started by upstream project "Trigger" build number 138 00:57:39 originally caused by: 00:57:39 Started by timer 00:57:39 Running as SYSTEM 00:57:39 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-docs 00:57:39 The recommended git tool is: NONE 00:57:39 No credentials specified 00:57:39 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-docs/.git # timeout=10 00:57:39 Fetching changes from the remote Git repository 00:57:39 > git config remote.origin.url https://github.com/ome/ome-documentation # timeout=10 00:57:39 Fetching upstream changes from https://github.com/ome/ome-documentation 00:57:39 > git --version # timeout=10 00:57:39 > git --version # 'git version 2.39.3' 00:57:39 > git fetch --tags --force --progress -- https://github.com/ome/ome-documentation +refs/heads/*:refs/remotes/origin/* # timeout=10 00:57:41 > git rev-parse origin/develop^{commit} # timeout=10 00:57:41 Checking out Revision 4d63ee52569bb3ab1e65e1ddcae81e27213e2a47 (origin/develop) 00:57:41 > git config core.sparsecheckout # timeout=10 00:57:41 > git checkout -f 4d63ee52569bb3ab1e65e1ddcae81e27213e2a47 # timeout=10 00:57:42 Commit message: "Merge pull request #2444 from ome/create-pull-request/patch" 00:57:42 > git rev-list --no-walk 4d63ee52569bb3ab1e65e1ddcae81e27213e2a47 # timeout=10 00:57:42 Cleaning workspace 00:57:42 > git rev-parse --verify HEAD # timeout=10 00:57:42 Resetting working tree 00:57:42 > git reset --hard # timeout=10 00:57:42 > git clean -fdx # timeout=10 00:57:42 [OMERO-docs] $ /bin/bash -xe /tmp/jenkins6264522289060048553.sh 00:57:42 + python3 -mvenv venv 00:57:47 + source /home/omero/workspace/OMERO-docs/venv/bin/activate 00:57:47 ++ deactivate nondestructive 00:57:47 ++ '[' -n '' ']' 00:57:47 ++ '[' -n '' ']' 00:57:47 ++ '[' -n /bin/bash -o -n '' ']' 00:57:47 ++ hash -r 00:57:47 ++ '[' -n '' ']' 00:57:47 ++ unset VIRTUAL_ENV 00:57:47 ++ '[' '!' nondestructive = nondestructive ']' 00:57:47 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-docs/venv 00:57:47 ++ export VIRTUAL_ENV 00:57:47 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:57:47 ++ PATH=/home/omero/workspace/OMERO-docs/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:57:47 ++ export PATH 00:57:47 ++ '[' -n '' ']' 00:57:47 ++ '[' -z '' ']' 00:57:47 ++ _OLD_VIRTUAL_PS1= 00:57:47 ++ PS1='(venv) ' 00:57:47 ++ export PS1 00:57:47 ++ '[' -n /bin/bash -o -n '' ']' 00:57:47 ++ hash -r 00:57:47 + pip install -U pip 00:57:47 Requirement already satisfied: pip in ./venv/lib/python3.9/site-packages (21.2.3) 00:57:47 Collecting pip 00:57:47 Using cached pip-24.1.2-py3-none-any.whl (1.8 MB) 00:57:47 Installing collected packages: pip 00:57:47 Attempting uninstall: pip 00:57:47 Found existing installation: pip 21.2.3 00:57:48 Uninstalling pip-21.2.3: 00:57:48 Successfully uninstalled pip-21.2.3 00:57:49 Successfully installed pip-24.1.2 00:57:49 + pip install -U scc 00:57:50 Collecting scc 00:57:50 Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB) 00:57:50 Collecting PyGithub>=1.54 (from scc) 00:57:50 Using cached PyGithub-2.3.0-py3-none-any.whl.metadata (3.8 kB) 00:57:50 Collecting PyYAML>=5.1 (from scc) 00:57:50 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) 00:57:50 Collecting future (from scc) 00:57:50 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) 00:57:50 Collecting ruamel.yaml (from scc) 00:57:50 Using cached ruamel.yaml-0.18.6-py3-none-any.whl.metadata (23 kB) 00:57:50 Collecting ruamel.yaml.jinja2 (from scc) 00:57:50 Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB) 00:57:50 Collecting six (from scc) 00:57:50 Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB) 00:57:51 Collecting urllib3<2 (from scc) 00:57:51 Using cached urllib3-1.26.19-py2.py3-none-any.whl.metadata (49 kB) 00:57:51 Collecting yaclifw<0.3,>=0.2.0 (from scc) 00:57:51 Using cached yaclifw-0.2.0-py3-none-any.whl 00:57:51 Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc) 00:57:51 Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl.metadata (8.6 kB) 00:57:51 Collecting requests>=2.14.0 (from PyGithub>=1.54->scc) 00:57:51 Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB) 00:57:51 Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) 00:57:51 Using cached PyJWT-2.8.0-py3-none-any.whl.metadata (4.2 kB) 00:57:51 Collecting typing-extensions>=4.0.0 (from PyGithub>=1.54->scc) 00:57:51 Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB) 00:57:51 Collecting Deprecated (from PyGithub>=1.54->scc) 00:57:51 Using cached Deprecated-1.2.14-py2.py3-none-any.whl.metadata (5.4 kB) 00:57:51 Collecting ruamel.yaml.clib>=0.2.7 (from ruamel.yaml->scc) 00:57:51 Using cached ruamel.yaml.clib-0.2.8-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl.metadata (2.2 kB) 00:57:51 Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) 00:57:51 Using cached cryptography-42.0.8-cp39-abi3-manylinux_2_28_x86_64.whl.metadata (5.3 kB) 00:57:52 Collecting cffi>=1.4.1 (from pynacl>=1.4.0->PyGithub>=1.54->scc) 00:57:52 Using cached cffi-1.16.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (1.5 kB) 00:57:52 Collecting charset-normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc) 00:57:52 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB) 00:57:52 Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc) 00:57:52 Using cached idna-3.7-py3-none-any.whl.metadata (9.9 kB) 00:57:52 Collecting certifi>=2017.4.17 (from requests>=2.14.0->PyGithub>=1.54->scc) 00:57:52 Using cached certifi-2024.7.4-py3-none-any.whl.metadata (2.2 kB) 00:57:52 Collecting wrapt<2,>=1.10 (from Deprecated->PyGithub>=1.54->scc) 00:57:52 Using cached wrapt-1.16.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB) 00:57:52 Collecting pycparser (from cffi>=1.4.1->pynacl>=1.4.0->PyGithub>=1.54->scc) 00:57:52 Using cached pycparser-2.22-py3-none-any.whl.metadata (943 bytes) 00:57:52 Using cached scc-0.20.0-py3-none-any.whl (48 kB) 00:57:52 Using cached PyGithub-2.3.0-py3-none-any.whl (354 kB) 00:57:52 Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB) 00:57:52 Using cached urllib3-1.26.19-py2.py3-none-any.whl (143 kB) 00:57:52 Using cached future-1.0.0-py3-none-any.whl (491 kB) 00:57:52 Using cached ruamel.yaml-0.18.6-py3-none-any.whl (117 kB) 00:57:52 Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB) 00:57:52 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB) 00:57:52 Using cached PyJWT-2.8.0-py3-none-any.whl (22 kB) 00:57:52 Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (856 kB) 00:57:52 Using cached requests-2.32.3-py3-none-any.whl (64 kB) 00:57:52 Using cached ruamel.yaml.clib-0.2.8-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl (562 kB) 00:57:52 Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB) 00:57:52 Using cached Deprecated-1.2.14-py2.py3-none-any.whl (9.6 kB) 00:57:52 Using cached certifi-2024.7.4-py3-none-any.whl (162 kB) 00:57:52 Using cached cffi-1.16.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (443 kB) 00:57:52 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB) 00:57:52 Using cached cryptography-42.0.8-cp39-abi3-manylinux_2_28_x86_64.whl (3.9 MB) 00:57:52 Using cached idna-3.7-py3-none-any.whl (66 kB) 00:57:52 Using cached wrapt-1.16.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (80 kB) 00:57:52 Using cached pycparser-2.22-py3-none-any.whl (117 kB) 00:57:52 Installing collected packages: wrapt, urllib3, typing-extensions, six, ruamel.yaml.clib, PyYAML, pyjwt, pycparser, idna, future, charset-normalizer, certifi, yaclifw, ruamel.yaml, requests, Deprecated, cffi, ruamel.yaml.jinja2, pynacl, cryptography, PyGithub, scc 00:57:55 Successfully installed Deprecated-1.2.14 PyGithub-2.3.0 PyYAML-6.0.1 certifi-2024.7.4 cffi-1.16.0 charset-normalizer-3.3.2 cryptography-42.0.8 future-1.0.0 idna-3.7 pycparser-2.22 pyjwt-2.8.0 pynacl-1.5.0 requests-2.32.3 ruamel.yaml-0.18.6 ruamel.yaml.clib-0.2.8 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.16.0 typing-extensions-4.12.2 urllib3-1.26.19 wrapt-1.16.0 yaclifw-0.2.0 00:57:55 + test -e src 00:57:55 + scc merge develop --no-ask --reset --comment -S success-only --push merge_ci 00:57:57 Following Github server redirection from /repos/ome/ome-documentation to /repositories/3198415 00:57:57 2024-07-15 00:57:57,392 [github.Reque] INFO Following Github server redirection from /repos/ome/ome-documentation to /repositories/3198415 00:57:59 2024-07-15 00:57:59,489 [ scc.merge] INFO Merging Pull Request(s) based on develop 00:57:59 2024-07-15 00:57:59,490 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 00:57:59 2024-07-15 00:57:59,490 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 00:57:59 2024-07-15 00:57:59,490 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 00:57:59 2024-07-15 00:57:59,490 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 00:57:59 2024-07-15 00:57:59,490 [ scc.merge] INFO Excluding Pull Request(s) without successful status 00:58:29 2024-07-15 00:58:29,945 [ scc.merge] INFO Repository: ome/ome-documentation 00:58:29 2024-07-15 00:58:29,946 [ scc.merge] INFO Excluded PRs: 00:58:29 2024-07-15 00:58:29,946 [ scc.merge] INFO - PR 2432 ehrenfeu 'Some suggestions on the OMERO.movie page' (user: ehrenfeu) 00:58:29 2024-07-15 00:58:29,946 [ scc.merge] INFO - PR 2393 bernt-matthias 'fix option capitalization' (user: bernt-matthias) 00:58:29 2024-07-15 00:58:29,946 [ scc.merge] INFO - PR 2357 fmeyenhofer 'Add a OMERO.table visualisation example' (user: fmeyenhofer) 00:58:29 2024-07-15 00:58:29,946 [ scc.merge] INFO - PR 2347 jburel 'pin version to match rtd ones' (exclude comment) 00:58:29 2024-07-15 00:58:29,946 [ scc.merge] INFO - PR 2298 pwalczysko 'test' (exclude comment) 00:58:29 2024-07-15 00:58:29,946 [ scc.merge] INFO Already up to date. 00:58:29 2024-07-15 00:58:29,946 [ scc.merge] INFO 00:58:29 2024-07-15 00:58:29,946 [ scc.merge] INFO Merged PRs: 00:58:29 2024-07-15 00:58:29,946 [ scc.merge] INFO - PR 2291 pwalczysko 'Add ansible and docker install doc - former "install.rst"' 00:58:29 2024-07-15 00:58:29,946 [ scc.merge] INFO - PR 2353 jburel 'Mencoder' 00:58:29 2024-07-15 00:58:29,946 [ scc.merge] INFO - PR 2355 will-moore 'Update python Tables code to use 'Image' column' 00:58:29 2024-07-15 00:58:29,946 [ scc.merge] INFO - PR 2424 DavidStirling 'Clarify CSRF token usage' 00:58:29 2024-07-15 00:58:29,946 [ scc.merge] INFO - PR 2430 jburel 'exclude trac' 00:58:29 2024-07-15 00:58:29,946 [ scc.merge] INFO - PR 2441 chris-allan 'Add documentation for ome/omero-py#418' 00:58:29 2024-07-15 00:58:29,946 [ scc.merge] INFO 00:58:32 2024-07-15 00:58:32,714 [ scc.merge] INFO Merged branch pushed to https://github.com/snoopycrimecop/ome-documentation/tree/merge_ci 00:58:32 [OMERO-docs] $ /bin/bash -xe /tmp/jenkins3957197576590888077.sh 00:58:32 + source /home/omero/workspace/OMERO-docs/venv/bin/activate 00:58:32 ++ deactivate nondestructive 00:58:32 ++ '[' -n '' ']' 00:58:32 ++ '[' -n '' ']' 00:58:32 ++ '[' -n /bin/bash -o -n '' ']' 00:58:32 ++ hash -r 00:58:32 ++ '[' -n '' ']' 00:58:32 ++ unset VIRTUAL_ENV 00:58:32 ++ '[' '!' nondestructive = nondestructive ']' 00:58:32 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-docs/venv 00:58:32 ++ export VIRTUAL_ENV 00:58:32 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:58:32 ++ PATH=/home/omero/workspace/OMERO-docs/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:58:32 ++ export PATH 00:58:32 ++ '[' -n '' ']' 00:58:32 ++ '[' -z '' ']' 00:58:32 ++ _OLD_VIRTUAL_PS1= 00:58:32 ++ PS1='(venv) ' 00:58:32 ++ export PS1 00:58:32 ++ '[' -n /bin/bash -o -n '' ']' 00:58:32 ++ hash -r 00:58:32 + pip install -r requirements.txt 00:58:33 Collecting sphinx==5.3.0 (from -r requirements.txt (line 1)) 00:58:33 Using cached sphinx-5.3.0-py3-none-any.whl.metadata (6.4 kB) 00:58:33 Collecting sphinx_rtd_theme==1.1.1 (from -r requirements.txt (line 2)) 00:58:33 Using cached sphinx_rtd_theme-1.1.1-py2.py3-none-any.whl.metadata (4.4 kB) 00:58:33 Collecting sphinxcontrib-applehelp (from sphinx==5.3.0->-r requirements.txt (line 1)) 00:58:33 Using cached sphinxcontrib_applehelp-1.0.8-py3-none-any.whl.metadata (2.3 kB) 00:58:33 Collecting sphinxcontrib-devhelp (from sphinx==5.3.0->-r requirements.txt (line 1)) 00:58:33 Using cached sphinxcontrib_devhelp-1.0.6-py3-none-any.whl.metadata (2.3 kB) 00:58:33 Collecting sphinxcontrib-jsmath (from sphinx==5.3.0->-r requirements.txt (line 1)) 00:58:33 Using cached sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl.metadata (1.4 kB) 00:58:33 Collecting sphinxcontrib-htmlhelp>=2.0.0 (from sphinx==5.3.0->-r requirements.txt (line 1)) 00:58:33 Using cached sphinxcontrib_htmlhelp-2.0.5-py3-none-any.whl.metadata (2.3 kB) 00:58:33 Collecting sphinxcontrib-serializinghtml>=1.1.5 (from sphinx==5.3.0->-r requirements.txt (line 1)) 00:58:33 Using cached sphinxcontrib_serializinghtml-1.1.10-py3-none-any.whl.metadata (2.4 kB) 00:58:34 Collecting sphinxcontrib-qthelp (from sphinx==5.3.0->-r requirements.txt (line 1)) 00:58:34 Using cached sphinxcontrib_qthelp-1.0.7-py3-none-any.whl.metadata (2.2 kB) 00:58:34 Collecting Jinja2>=3.0 (from sphinx==5.3.0->-r requirements.txt (line 1)) 00:58:34 Using cached jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB) 00:58:34 Collecting Pygments>=2.12 (from sphinx==5.3.0->-r requirements.txt (line 1)) 00:58:34 Using cached pygments-2.18.0-py3-none-any.whl.metadata (2.5 kB) 00:58:34 Collecting docutils<0.20,>=0.14 (from sphinx==5.3.0->-r requirements.txt (line 1)) 00:58:34 Using cached docutils-0.19-py3-none-any.whl.metadata (2.7 kB) 00:58:34 Collecting snowballstemmer>=2.0 (from sphinx==5.3.0->-r requirements.txt (line 1)) 00:58:34 Using cached snowballstemmer-2.2.0-py2.py3-none-any.whl.metadata (6.5 kB) 00:58:34 Collecting babel>=2.9 (from sphinx==5.3.0->-r requirements.txt (line 1)) 00:58:34 Using cached Babel-2.15.0-py3-none-any.whl.metadata (1.5 kB) 00:58:34 Collecting alabaster<0.8,>=0.7 (from sphinx==5.3.0->-r requirements.txt (line 1)) 00:58:34 Using cached alabaster-0.7.16-py3-none-any.whl.metadata (2.9 kB) 00:58:34 Collecting imagesize>=1.3 (from sphinx==5.3.0->-r requirements.txt (line 1)) 00:58:34 Using cached imagesize-1.4.1-py2.py3-none-any.whl.metadata (1.5 kB) 00:58:34 Requirement already satisfied: requests>=2.5.0 in ./venv/lib/python3.9/site-packages (from sphinx==5.3.0->-r requirements.txt (line 1)) (2.32.3) 00:58:34 Collecting packaging>=21.0 (from sphinx==5.3.0->-r requirements.txt (line 1)) 00:58:34 Using cached packaging-24.1-py3-none-any.whl.metadata (3.2 kB) 00:58:34 Collecting importlib-metadata>=4.8 (from sphinx==5.3.0->-r requirements.txt (line 1)) 00:58:34 Using cached importlib_metadata-8.0.0-py3-none-any.whl.metadata (4.6 kB) 00:58:34 Collecting docutils<0.20,>=0.14 (from sphinx==5.3.0->-r requirements.txt (line 1)) 00:58:34 Using cached docutils-0.17.1-py2.py3-none-any.whl.metadata (2.9 kB) 00:58:35 Collecting zipp>=0.5 (from importlib-metadata>=4.8->sphinx==5.3.0->-r requirements.txt (line 1)) 00:58:35 Using cached zipp-3.19.2-py3-none-any.whl.metadata (3.6 kB) 00:58:35 Collecting MarkupSafe>=2.0 (from Jinja2>=3.0->sphinx==5.3.0->-r requirements.txt (line 1)) 00:58:35 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB) 00:58:35 Requirement already satisfied: charset-normalizer<4,>=2 in ./venv/lib/python3.9/site-packages (from requests>=2.5.0->sphinx==5.3.0->-r requirements.txt (line 1)) (3.3.2) 00:58:35 Requirement already satisfied: idna<4,>=2.5 in ./venv/lib/python3.9/site-packages (from requests>=2.5.0->sphinx==5.3.0->-r requirements.txt (line 1)) (3.7) 00:58:35 Requirement already satisfied: urllib3<3,>=1.21.1 in ./venv/lib/python3.9/site-packages (from requests>=2.5.0->sphinx==5.3.0->-r requirements.txt (line 1)) (1.26.19) 00:58:35 Requirement already satisfied: certifi>=2017.4.17 in ./venv/lib/python3.9/site-packages (from requests>=2.5.0->sphinx==5.3.0->-r requirements.txt (line 1)) (2024.7.4) 00:58:35 Using cached sphinx-5.3.0-py3-none-any.whl (3.2 MB) 00:58:35 Using cached sphinx_rtd_theme-1.1.1-py2.py3-none-any.whl (2.8 MB) 00:58:35 Using cached alabaster-0.7.16-py3-none-any.whl (13 kB) 00:58:35 Using cached Babel-2.15.0-py3-none-any.whl (9.6 MB) 00:58:35 Using cached docutils-0.17.1-py2.py3-none-any.whl (575 kB) 00:58:36 Using cached imagesize-1.4.1-py2.py3-none-any.whl (8.8 kB) 00:58:36 Using cached importlib_metadata-8.0.0-py3-none-any.whl (24 kB) 00:58:36 Using cached jinja2-3.1.4-py3-none-any.whl (133 kB) 00:58:36 Using cached packaging-24.1-py3-none-any.whl (53 kB) 00:58:36 Using cached pygments-2.18.0-py3-none-any.whl (1.2 MB) 00:58:36 Using cached snowballstemmer-2.2.0-py2.py3-none-any.whl (93 kB) 00:58:36 Using cached sphinxcontrib_htmlhelp-2.0.5-py3-none-any.whl (99 kB) 00:58:36 Using cached sphinxcontrib_serializinghtml-1.1.10-py3-none-any.whl (92 kB) 00:58:36 Using cached sphinxcontrib_applehelp-1.0.8-py3-none-any.whl (120 kB) 00:58:36 Using cached sphinxcontrib_devhelp-1.0.6-py3-none-any.whl (83 kB) 00:58:36 Using cached sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl (5.1 kB) 00:58:36 Using cached sphinxcontrib_qthelp-1.0.7-py3-none-any.whl (89 kB) 00:58:36 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB) 00:58:36 Using cached zipp-3.19.2-py3-none-any.whl (9.0 kB) 00:58:36 Installing collected packages: snowballstemmer, zipp, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, Pygments, packaging, MarkupSafe, imagesize, docutils, babel, alabaster, Jinja2, importlib-metadata, sphinx, sphinx_rtd_theme 00:58:40 Successfully installed Jinja2-3.1.4 MarkupSafe-2.1.5 Pygments-2.18.0 alabaster-0.7.16 babel-2.15.0 docutils-0.17.1 imagesize-1.4.1 importlib-metadata-8.0.0 packaging-24.1 snowballstemmer-2.2.0 sphinx-5.3.0 sphinx_rtd_theme-1.1.1 sphinxcontrib-applehelp-1.0.8 sphinxcontrib-devhelp-1.0.6 sphinxcontrib-htmlhelp-2.0.5 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-1.0.7 sphinxcontrib-serializinghtml-1.1.10 zipp-3.19.2 00:58:40 + cd omero 00:58:40 + make clean html linkcheck 00:58:41 rm -rf _build/* 00:58:41 sphinx-build -b html -d _build/doctrees . _build/html 00:58:41 Running Sphinx v5.3.0 00:58:41 making output directory... done 00:58:41 building [mo]: targets for 0 po files that are out of date 00:58:41 building [html]: targets for 159 source files that are out of date 00:58:41 updating environment: [new config] 159 added, 0 changed, 0 removed 00:58:41 reading sources... 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https://docs.djangoproject.com/en/1.11/ref/applications/#configuring-applications 00:59:46 (sysadmins/config: line 2339) ok https://docs.djangoproject.com/en/1.11/ref/settings/#csrf-trusted-origins 00:59:46 (developers/Web/CSRF: line 10) ok https://docs.djangoproject.com/en/1.11/ref/csrf/ 00:59:46 (developers/Web/WritingTemplates: line 28) ok https://docs.djangoproject.com/en/1.11/ref/templates/ 00:59:46 (sysadmins/config: line 2451) ok https://docs.djangoproject.com/en/1.11/ref/urlresolvers/#reverse 00:59:46 (developers/Web/WritingViews: line 113) ok https://docs.djangoproject.com/en/1.11/ref/templates/api/#subclassing-context-requestcontext 00:59:46 (sysadmins/config: line 2683) ok https://docs.djangoproject.com/en/1.11/ref/settings/#secure-proxy-ssl-header 00:59:46 (developers/Web/CSRF: line 49) ok https://docs.djangoproject.com/en/1.11/topics/http/decorators/ 00:59:46 (sysadmins/config: line 2747) ok https://docs.djangoproject.com/en/1.11/ref/settings/#session-engine 00:59:46 (sysadmins/config: line 2483) ok https://docs.djangoproject.com/en/1.11/topics/http/middleware/ 00:59:46 (developers/Web/Webclient: line 60) ok https://docs.djangoproject.com/en/1.11/topics/http/sessions/ 00:59:46 (developers/Python: line 7) ok https://docs.conda.io/en/latest/ 00:59:46 (sysadmins/config: line 2755) ok https://docs.djangoproject.com/en/1.11/topics/http/sessions/#browser-length-vs-persistent-sessions 00:59:46 (sysadmins/config: line 2283) ok https://docs.djangoproject.com/en/1.11/topics/http/sessions/#using-cached-sessions 00:59:46 (sysadmins/config: line 2763) ok https://docs.djangoproject.com/en/1.11/topics/http/sessions/#session-serialization 00:59:46 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 304) ok https://docs.djangoproject.com/en/1.11/topics/http/sessions/#clearing-the-session-store 00:59:46 (developers/Web/Webclient: line 6) ok https://docs.djangoproject.com/en/1.11/topics/templates/ 00:59:46 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 295) ok https://docs.djangoproject.com/en/1.11/topics/http/sessions/#using-file-based-sessions 00:59:46 (developers/testing: line 564) ok https://docs.djangoproject.com/en/1.11/topics/testing/tools 00:59:47 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 324) ok https://docs.gunicorn.org/en/stable/deploy.html 00:59:47 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 157) ok https://docs.gunicorn.org/en/stable/settings.html 00:59:47 (sysadmins/config: line 2923) ok https://docs.gunicorn.org/en/latest/settings.html 00:59:47 (sysadmins/config: line 2827) ok https://docs.gunicorn.org/en/latest/settings.html?highlight=limit_request_line 00:59:47 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 350) ok https://docs.gunicorn.org/en/stable/settings.html#threads 00:59:47 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 334) ok https://docs.gunicorn.org/en/stable/design.html 00:59:47 (sysadmins/config: line 2931) ok https://docs.gunicorn.org/en/stable/settings.html#timeout 00:59:47 (sysadmins/unix/install-web/web-deployment: line 11) redirect https://docs.gunicorn.org/ - with Found to https://docs.gunicorn.org/en/stable/ 00:59:47 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 370) ok https://docs.gunicorn.org/en/stable/settings.html#worker-connections 00:59:47 (sysadmins/config: line 2939) ok https://docs.gunicorn.org/en/stable/settings.html#workers 00:59:48 (developers/Server/Events: line 41) ok https://docs.jboss.org/hibernate/core/3.6/reference/en-US/html/events.html 00:59:48 (sysadmins/limitations: line 82) redirect https://docs.openmicroscopy.org/bio-formats/7.3.0/formats/gatan-digital-micrograph.html - with Found to https://bio-formats.readthedocs.io/en/v7.3.0/formats/gatan-digital-micrograph.html 00:59:48 (developers/Server/SecuritySystem: line 38) ok https://docs.jboss.org/hibernate/core/3.6/reference/en-US/html/filters.html 00:59:48 (developers/GettingStarted: line 232) ok https://docs.jboss.org/hibernate/orm/3.6/reference/en-US/html/queryhql.html 00:59:48 (developers/ImportFS: line 54) redirect https://docs.openmicroscopy.org/bio-formats/7.3.0/ - with Found to https://bio-formats.readthedocs.io/en/v7.3.0/ 00:59:49 (users/cli/import: line 4) redirect https://docs.openmicroscopy.org/bio-formats/7.3.0/supported-formats.html - with Found to https://bio-formats.readthedocs.io/en/v7.3.0/supported-formats.html 00:59:49 (sysadmins/limitations: line 83) redirect https://docs.openmicroscopy.org/bio-formats/7.3.0/formats/mrc.html - with Found to https://bio-formats.readthedocs.io/en/v7.3.0/formats/mrc.html 00:59:49 (sysadmins/limitations: line 84) redirect https://docs.openmicroscopy.org/bio-formats/7.3.0/formats/tiff.html - with Found to https://bio-formats.readthedocs.io/en/v7.3.0/formats/tiff.html 00:59:49 (developers/GettingStarted: line 60) redirect https://docs.openmicroscopy.org/contributing/ci-omero.html - permanently to https://ome-contributing.readthedocs.io/en/latest/ci-omero.html 00:59:49 (sysadmins/UpgradeCheck: line 12) redirect https://docs.openmicroscopy.org/bio-formats/7.3.0/users/comlinetools/index.html#version-checker - with Found to https://bio-formats.readthedocs.io/en/v7.3.0/users/comlinetools/index.html#version-checker 00:59:49 (developers/installation: line 30) redirect https://docs.openmicroscopy.org/contributing/using-git.html - permanently to https://ome-contributing.readthedocs.io/en/latest/using-git.html 00:59:49 ( index: line 39) redirect https://docs.openmicroscopy.org/latest/ome-model/ - with Found to https://ome-model.readthedocs.io/en/stable/ 00:59:50 (developers/Model/Containers: line 8) redirect https://docs.openmicroscopy.org/latest/ome-model/developers/model-overview.html - with Found to https://ome-model.readthedocs.io/en/stable/developers/model-overview.html 00:59:50 (sysadmins/limitations: line 61) redirect https://docs.openmicroscopy.org/latest/bio-formats/users/comlinetools/conversion.html - with Found to https://bio-formats.readthedocs.io/en/stable/users/comlinetools/conversion.html 00:59:50 (developers/Model/Units: line 11) redirect https://docs.openmicroscopy.org/latest/ome-model/developers/ome-units.html - with Found to https://ome-model.readthedocs.io/en/stable/developers/ome-units.html 00:59:50 (developers/json-api: line 858) redirect https://docs.openmicroscopy.org/latest/ome-model/developers/screen-plate-well.html - with Found to https://ome-model.readthedocs.io/en/stable/developers/screen-plate-well.html 00:59:50 ( developers/Java: line 687) redirect https://docs.openmicroscopy.org/latest/ome-model/developers/roi.html - with Found to https://ome-model.readthedocs.io/en/stable/developers/roi.html 00:59:50 (sysadmins/server-upgrade: line 17) redirect https://docs.openmicroscopy.org/latest/omero5.5/sysadmins/server-upgrade.html - permanently to https://docs.openmicroscopy.org/omero/5.5.1/sysadmins/server-upgrade.html 00:59:50 (developers/GettingStarted/AdvancedClientDevelopment: line 366) redirect https://docs.openmicroscopy.org/latest/ome-model/ome-xml/ - with Found to https://ome-model.readthedocs.io/en/stable/ome-xml/ 00:59:50 ( index: line 35) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/ 00:59:50 (developers/Server/LightAdmins: line 204) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/ome/services/blitz/repo/RepositoryDaoImpl.html 00:59:50 (developers/Server/GraphsImpl: line 70) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/cmd/graphs/BaseGraphPolicyAdjuster.html 00:59:50 (developers/Model/Containers: line 8) redirect https://docs.openmicroscopy.org/latest/ome-model/schemas/june-2016.html - with Found to https://ome-model.readthedocs.io/en/stable/schemas/june-2016.html 00:59:50 (developers/Server/GraphsImpl: line 48) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/cmd/graphs/BaseGraphTraversalProcessor.html 00:59:50 (developers/Server/GraphsImpl: line 77) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/cmd/graphs/ChildOptionsPolicy.html 00:59:50 (developers/Server/GraphsImpl: line 100) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/cmd/graphs/GraphHelper.html 00:59:50 (developers/Server/GraphsImpl: line 100) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/cmd/graphs/GraphUtil.html 00:59:50 (developers/Server/GraphsImpl: line 100) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/cmd/graphs/GraphRequestFactory.html 00:59:50 (developers/Server/GraphsImpl: line 48) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/cmd/graphs/NullGraphTraversalProcessor.html 00:59:50 (developers/Server/GraphsImpl: line 83) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/cmd/graphs/SkipHeadPolicy.html 00:59:50 (developers/Server/GraphsImpl: line 86) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/cmd/graphs/SkipTailPolicy.html 00:59:50 (developers/Model/Units: line 16) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/model/ElectricPotentialI.html 00:59:50 (developers/Model/Units: line 17) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/model/FrequencyI.html 00:59:50 (developers/Model/Units: line 18) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/model/LengthI.html 00:59:50 (developers/Model/Units: line 19) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/model/PowerI.html 00:59:50 (developers/Model/Units: line 21) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/model/TemperatureI.html 00:59:50 (developers/Model/Units: line 22) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/model/TimeI.html 00:59:50 (developers/Model/Units: line 20) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/model/PressureI.html 00:59:50 ( index: line 35) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/ 00:59:50 (developers/Modules/Api: line 126) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api.html 00:59:50 (developers/Modules/Api: line 45) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IAdmin.html 00:59:50 (developers/Modules/Api: line 50) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IConfig.html 00:59:50 (developers/Modules/Api: line 54) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IContainer.html 00:59:50 (developers/Modules/Api: line 57) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/ILdap.html 00:59:50 (developers/Modules/Api: line 61) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IMetadata.html 00:59:50 (developers/Modules/Api: line 64) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IPixels.html 00:59:50 (developers/Modules/Api: line 67) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IProjection.html 00:59:50 (developers/Modules/Api: line 70) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IQuery.html 00:59:50 (developers/Modules/Api: line 74) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IRenderingSettings.html 00:59:50 (developers/GettingStarted/AdvancedClientDevelopment: line 477) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IQuery.html#projection 00:59:50 (developers/Modules/Api: line 77) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IRepositoryInfo.html 00:59:50 (developers/Modules/Api: line 83) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IScript.html 00:59:50 (developers/Modules/Api: line 80) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IRoi.html 00:59:50 (developers/Modules/Api: line 86) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/ISession.html 00:59:50 (developers/Modules/Api: line 89) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IShare.html 00:59:50 (developers/Modules/Api: line 91) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/ITimeline.html 00:59:50 (developers/Modules/Api: line 111) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/RawFileStore.html 00:59:50 (developers/Modules/Api: line 94) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/ITypes.html 00:59:50 (developers/Modules/Api: line 97) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IUpdate.html 00:59:51 (developers/Modules/Api: line 117) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/RenderingEngine.html 00:59:51 (developers/Modules/Api: line 16) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/ServiceFactory.html 00:59:51 (developers/Modules/Api: line 114) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/RawPixelsStore.html 00:59:51 ( sysadmins/index: line 15) redirect https://docs.openmicroscopy.org/latest/ome-model/specifications/ - with Found to https://ome-model.readthedocs.io/en/stable/specifications/ 00:59:51 (developers/Modules/Api: line 121) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/ThumbnailStore.html 00:59:51 (developers/PythonBlitzGateway: line 111) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/ServiceFactory.html#getQueryService 00:59:51 (developers/PythonBlitzGateway: line 111) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/ServiceFactory.html#createRenderingEngine 00:59:51 (developers/Server/GraphRequests: line 75) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/Chgrp2.html 00:59:51 (developers/Server/GraphRequests: line 79) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/Chown2.html 00:59:51 (developers/Server/GraphRequests: line 83) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/Chmod2.html 00:59:51 (developers/Server/GraphRequests: line 88) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/Delete2.html 00:59:51 (developers/Server/GraphRequests: line 27) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/DiskUsage2.html 00:59:51 (developers/Server/GraphRequests: line 96) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/Duplicate.html 00:59:51 (developers/Server/GraphRequests: line 34) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/FindParents.html 00:59:51 (developers/Server/GraphRequests: line 42) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/FindChildren.html 00:59:51 (developers/Server/GraphRequests: line 104) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/SkipHead.html 00:59:51 (developers/Server/GraphRequests: line 6) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/GraphQuery.html 00:59:51 (developers/Server/GraphRequests: line 59) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/GraphModify2.html 00:59:51 (developers/Server/GraphRequests: line 18) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/LegalGraphTargets.html 00:59:51 (developers/GettingStarted: line 136) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model.html 00:59:51 (developers/Tables: line 339) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/grid/Table.html 00:59:51 (developers/Server/GraphRequests: line 71) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/graphs/ChildOption.html 00:59:51 (developers/Server/LightAdmins: line 22) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/AdminPrivilege.html 00:59:51 (developers/GettingStarted: line 161) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Annotation.html 00:59:51 (developers/GettingStarted: line 179) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Channel.html 00:59:51 (developers/GettingStarted: line 161) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/CommentAnnotation.html 00:59:51 (developers/GettingStarted: line 150) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Dataset.html 00:59:51 (developers/GettingStarted: line 161) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/DatasetAnnotationLink.html 00:59:51 (developers/GettingStarted: line 150) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/DatasetImageLink.html 00:59:51 (developers/GettingStarted: line 161) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/FileAnnotation.html 00:59:51 (developers/Server/Permissions: line 381) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Permissions.html#canChgrp 00:59:51 (developers/Server/Permissions: line 380) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Permissions.html#canAnnotate 00:59:51 (sysadmins/config: line 1664) redirect https://docs.openmicroscopy.org/latest/omero/sysadmins/customization.html#download-restrictions - with Found to https://omero.readthedocs.io/en/stable/sysadmins/customization.html#download-restrictions 00:59:51 (developers/Server/Permissions: line 382) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Permissions.html#canChown 00:59:51 (developers/GettingStarted: line 150) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Image.html 00:59:51 (developers/Server/Permissions: line 383) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Permissions.html#canDelete 00:59:51 (developers/Server/Permissions: line 385) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Permissions.html#canLink 00:59:51 (developers/GettingStarted: line 150) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Project.html 00:59:51 (developers/Server/Permissions: line 384) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Permissions.html#canEdit 00:59:51 (developers/GettingStarted: line 179) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Pixels.html 00:59:51 (developers/GettingStarted: line 161) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/ProjectAnnotationLink.html 00:59:51 (developers/Server/LightAdmins: line 160) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/sys/EventContext.html 00:59:51 ( developers/Java: line 44) ok https://docs.openmicroscopy.org/omero-gateway/5.9.1/javadoc/omero/gateway/Gateway.html 00:59:51 (developers/GettingStarted: line 150) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/ProjectDatasetLink.html 00:59:51 ( developers/Java: line 52) ok https://docs.openmicroscopy.org/omero-gateway/5.9.1/javadoc//omero/gateway/facility/package-summary.html 00:59:51 ( developers/Java: line 52) ok https://docs.openmicroscopy.org/omero-gateway/5.9.1/javadoc/omero/gateway/facility/BrowseFacility.html 00:59:51 ( developers/Java: line 57) ok https://docs.openmicroscopy.org/omero-gateway/5.9.1/javadoc/omero/gateway/model/DataObject.html 00:59:51 (developers/Model/EveryObject: line 92) ok https://docs.openmicroscopy.org/omero-model/5.6.14/javadoc/ome/model/ILink.html 00:59:51 (developers/Model/EveryObject: line 24) ok https://docs.openmicroscopy.org/omero-model/5.6.14/javadoc/ome/model/IEnum.html 00:59:51 (developers/Model/EveryObject: line 54) ok https://docs.openmicroscopy.org/omero-model/5.6.14/javadoc/ome/model/IMutable.html 00:59:51 (developers/Model/EveryObject: line 425) ok https://docs.openmicroscopy.org/omero-model/5.6.14/javadoc/ome/model/units/ElectricPotential.html 00:59:51 (developers/Model/EveryObject: line 1190) ok https://docs.openmicroscopy.org/omero-model/5.6.14/javadoc/ome/model/units/Pressure.html 00:59:51 (developers/Model/EveryObject: line 467) ok https://docs.openmicroscopy.org/omero-model/5.6.14/javadoc/ome/model/units/Frequency.html 00:59:51 (developers/Model/EveryObject: line 114) ok https://docs.openmicroscopy.org/omero-model/5.6.14/javadoc/ome/model/units/Power.html 00:59:51 (developers/Model/EveryObject: line 580) ok https://docs.openmicroscopy.org/omero-model/5.6.14/javadoc/ome/model/units/Length.html 00:59:51 (developers/Model/EveryObject: line 1190) ok https://docs.openmicroscopy.org/omero-model/5.6.14/javadoc/ome/model/units/Temperature.html 00:59:51 (developers/Model/EveryObject: line 2238) ok https://docs.openmicroscopy.org/omero-model/5.6.14/javadoc/ome/model/units/Time.html 00:59:51 (developers/Server/LightAdmins: line 219) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/logic/AdminImpl.html 00:59:51 (developers/Server/LightAdmins: line 242) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/security/basic/LightAdminPrivilegesCleanup.html 00:59:51 (developers/Server/LightAdmins: line 219) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/security/basic/BasicACLVoter.html 00:59:51 (developers/Server/LightAdmins: line 102) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/security/basic/LightAdminPrivilegesSecurityFilter.html 00:59:51 (developers/Server/LightAdmins: line 219) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/security/basic/OmeroInterceptor.html 00:59:51 (developers/Server/GraphsImpl: line 11) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/GraphPathReport.html 00:59:51 (developers/Server/GraphsImpl: line 11) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/GraphPathBean.html 00:59:51 (developers/Server/GraphsImpl: line 60) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/GraphPolicy.html 00:59:51 (developers/Server/GraphsImpl: line 60) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/GraphPolicyRule.html 00:59:51 (developers/Server/GraphsImpl: line 88) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/GraphPolicyRulePredicate.html 00:59:51 (developers/Server/GraphsImpl: line 32) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/GraphTraversal.PlanExecutor.html 00:59:51 (developers/Server/GraphsImpl: line 22) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/GraphTraversal.html 00:59:51 (developers/Server/GraphsImpl: line 32) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/GraphTraversal.Processor.html 00:59:51 (developers/Server/GraphsImpl: line 88) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/GroupPredicate.html 00:59:51 (developers/Server/LightAdmins: line 236) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/util/DBUserCheck.html 00:59:51 (developers/Server/GraphsImpl: line 88) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/PermissionsPredicate.html 00:59:51 ( users/history: line 986) ok https://docs.openmicroscopy.org/omero/5.3.0/developers/whatsnew.html 00:59:51 (developers/Server/GraphsImpl: line 42) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/ModelObjectSequencer.html 00:59:51 (sysadmins/whatsnew: line 16) redirect https://docs.openmicroscopy.org/omero/5.5/sysadmins/whatsnew.html - permanently to https://docs.openmicroscopy.org/omero/5.5.1/sysadmins/whatsnew.html 00:59:51 (users/cli/import-target: line 157) ok https://docs.oracle.com/javase/7/docs/api/java/util/regex/Pattern.html 00:59:51 (sysadmins/config: line 811) ok https://docs.oracle.com/javase/jndi/tutorial/ldap/connect/create.html 00:59:51 (sysadmins/server-ldap: line 318) ok https://docs.oracle.com/javase/jndi/tutorial/ldap/referral/jndi.html 00:59:51 (developers/Modules/Api: line 223) ok https://docs.oracle.com/javase/tutorial/java/annotations/basics.html 00:59:51 (sysadmins/config: line 924) ok https://docs.oracle.com/javase/tutorial/jndi/newstuff/readtimeout.html 00:59:52 (sysadmins/config: line 1011) ok https://docs.python.org/3/library/logging.html#levels 00:59:52 (sysadmins/dropbox: line 152) ok https://docs.python.org/2.7/library/site.html 00:59:52 (sysadmins/config: line 2205) redirect https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples - with Found to https://omero.readthedocs.io/en/stable/sysadmins/grid.html#deployment-examples 00:59:52 (developers/testing: line 45) ok https://docs.pytest.org/en/latest/ 00:59:52 (developers/testing: line 342) ok https://docs.pytest.org/en/latest/how-to/usage.html 00:59:52 (sysadmins/python3-migration: line 84) ok https://downloads.openmicroscopy.org 00:59:52 (sysadmins/version-requirements: line 248) ok https://download.postgresql.org/pub/repos/yum/12/redhat/rhel-9-x86_64/ 00:59:52 (sysadmins/UpgradeCheck: line 29) redirect https://downloads.openmicroscopy.org/latest/omero - permanently to https://downloads.openmicroscopy.org/omero/5.6.11/ 00:59:52 (sysadmins/unix/server-install-homebrew: line 204) redirect https://downloads.openmicroscopy.org/latest/omero/artifacts/ - permanently to https://downloads.openmicroscopy.org/omero/5.6.11/artifacts/ 00:59:52 (developers/GettingStarted: line 56) redirect https://downloads.openmicroscopy.org/latest/omero5.5/ - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/ 00:59:52 (developers/Server/Aop: line 77) redirect https://docs.spring.io/spring/docs/2.0.x/reference/aop.html - permanently to https://docs.spring.io/spring-framework/docs/2.0.x/reference/aop.html 00:59:52 (developers/analysis: line 12) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/ - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/api/ 00:59:52 ( index: line 35) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/ - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/ 00:59:52 (developers/PythonBlitzGateway: line 91) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/omero/omero.gateway.html - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/omero/omero.gateway.html 00:59:52 (developers/PythonBlitzGateway: line 171) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/omero/omero.gateway.html#omero.gateway.ImageWrapper - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/omero/omero.gateway.html#omero.gateway.ImageWrapper 00:59:52 (developers/PythonBlitzGateway: line 19) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/omero/omero.gateway.html#omero.gateway._BlitzGateway - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/omero/omero.gateway.html#omero.gateway._BlitzGateway 00:59:52 (developers/GettingStarted/AdvancedClientDevelopment: line 477) ok https://downloads.openmicroscopy.org/presentations/2017/Team-Training/Hibernate/ 00:59:53 (developers/PythonBlitzGateway: line 123) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/omero/omero.gateway.html#omero.gateway._BlitzGateway._createProxies - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/omero/omero.gateway.html#omero.gateway._BlitzGateway._createProxies 00:59:53 (sysadmins/ansible-docker: line 29) ok https://downloads.openmicroscopy.org/presentations/2020/Dundee/Workshops/OME2020-OMERO-Installation 00:59:53 (developers/Web/WebGateway: line 15) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/omeroweb/omeroweb.webgateway.html#module-omeroweb.webgateway.urls - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/omeroweb/omeroweb.webgateway.html#module-omeroweb.webgateway.urls 00:59:53 (developers/Server/HowToCreateAService: line 101) redirect https://docs.spring.io/spring/docs/2.0.x/reference/beans.html#beans-factory-scopes-singleton - permanently to https://docs.spring.io/spring-framework/docs/2.0.x/reference/beans.html#beans-factory-scopes-singleton 00:59:53 (developers/Server/Aop: line 86) ok https://en.wikipedia.org/wiki/Aspect-oriented_programming 00:59:53 (sysadmins/server-ldap: line 322) ok https://en.wikipedia.org/wiki/Active_Directory 00:59:53 (sysadmins/version-requirements: line 195) ok https://download.rockylinux.org/pub/rocky/9/BaseOS/x86_64/os/Packages/ 00:59:53 (developers/GettingStarted/AdvancedClientDevelopment: line 78) ok https://en.wikipedia.org/wiki/Interface_description_language 00:59:53 (developers/Model/Units: line 185) ok https://en.wikipedia.org/wiki/International_System_of_Units 00:59:53 (sysadmins/in-place-import: line 288) ok https://en.wikipedia.org/wiki/Hard_link 00:59:53 (sysadmins/server-ldap: line 4) ok https://en.wikipedia.org/wiki/Lightweight_Directory_Access_Protocol 00:59:53 (sysadmins/server-backup-and-restore: line 216) ok https://en.wikipedia.org/wiki/List_of_backup_software 00:59:53 (developers/GettingStarted/AdvancedClientDevelopment: line 56) ok https://en.wikipedia.org/wiki/Fallacies_of_Distributed_Computing 00:59:53 (sysadmins/config: line 2835) ok https://en.wikipedia.org/wiki/List_of_tz_database_time_zones 00:59:53 (developers/Model/Units: line 184) ok https://en.wikipedia.org/wiki/System_of_measurement 00:59:53 (developers/Model/Units: line 183) ok https://en.wikipedia.org/wiki/Units_of_measurement 00:59:53 (sysadmins/server-syslog: line 4) ok https://en.wikipedia.org/wiki/Syslog 00:59:54 (sysadmins/version-requirements: line 103) ok https://endoflife.date/centos 00:59:54 (sysadmins/version-requirements: line 99) ok https://endoflife.date/rhel 00:59:54 (sysadmins/version-requirements: line 119) ok https://endoflife.date/rocky-linux 00:59:54 (developers/index: line 28) redirect https://drive.google.com/file/d/1ld6s678JWRF15qUT4_3LyTE4IGYh-wRZ/ - with Found to https://drive.google.com/file/d/1ld6s678JWRF15qUT4_3LyTE4IGYh-wRZ/edit 00:59:54 (developers/Server/Aop: line 25) redirect https://eclipse.org/aspectj/ - permanently to https://eclipse.dev/aspectj/ 00:59:54 (sysadmins/limitations: line 49) ok https://forum.image.sc/t/pixeldata-threads-and-pyramid-generation-issues/49794 00:59:54 (sysadmins/python3-migration: line 62) redirect https://forum.image.sc/c/data - permanently to https://forum.image.sc/c/data-management/29 00:59:54 (sysadmins/system-migration: line 39) ok https://forum.image.sc/tag/omero 00:59:54 (sysadmins/python3-migration: line 52) ok https://galaxy.ansible.com/ome 00:59:54 (sysadmins/system-migration: line 33) ok https://galaxy.ansible.com/ui/standalone/namespaces/5249/ 00:59:54 (sysadmins/system-migration: line 33) ok https://galaxy.ansible.com/ui/standalone/roles/ome/omero_server/ 00:59:55 (sysadmins/system-migration: line 33) ok https://galaxy.ansible.com/ui/standalone/roles/ome/omero_web/ 00:59:55 ( developers/Web: line 73) ok https://github.com/German-BioImaging/omero-autotag 00:59:55 (sysadmins/limitations: line 61) ok https://github.com/AllenCellModeling/aicsimageio 00:59:55 (sysadmins/limitations: line 61) ok https://github.com/BIOP/ijp-kheops 00:59:55 ( developers/Web: line 73) ok https://github.com/German-BioImaging/omero-tagsearch 00:59:55 (sysadmins/unix/server-install-homebrew: line 27) ok https://github.com/Homebrew/brew/blob/master/docs/Installation.md 00:59:55 (developers/Tables: line 18) ok https://github.com/PyTables/PyTables/releases/tag/v3.9.1 00:59:55 (developers/Python: line 81) ok https://github.com/TheJacksonLaboratory/ezomero 00:59:55 (developers/scripts/index: line 55) ok https://github.com/QBI-Microscopy/omero-user-scripts 00:59:56 (developers/scripts/index: line 53) ok https://github.com/aherbert/omero-user-scripts 00:59:56 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 173) ok https://github.com/adamchainz/django-cors-headers 00:59:56 (developers/scripts/index: line 57) ok https://github.com/dsudar/OMEROscripts 00:59:56 (developers/scripts/index: line 47) ok https://github.com/glencoesoftware/omero-user-scripts 00:59:56 (developers/Python: line 24) ok https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/tag/20240202 00:59:56 (sysadmins/server-upgrade: line 74) redirect https://github.com/glencoesoftware/omero-ms-image-region/tree/v0.5.1/src/dist/MemoFileRegenerationReadMe.md - permanently to https://github.com/glencoesoftware/omero-ms-image-region/blob/v0.5.1/src/dist/MemoFileRegenerationReadMe.md 00:59:56 (developers/Python: line 33) ok https://github.com/glencoesoftware/zeroc-ice-py-macos-universal2/releases/tag/20240131 00:59:56 (developers/Python: line 42) redirect https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl - with Found to https://objects.githubusercontent.com/github-production-release-asset-2e65be/543662060/9ce94eef-3ec3-4651-a4ac-af4ecb7b5d87?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=releaseassetproduction%2F20240715%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20240715T005956Z&X-Amz-Expires=300&X-Amz-Signature=b2ea66c1d91a78053643c70a3fb60cb5089b5b33a5c93a94198f64ca7ccc1799&X-Amz-SignedHeaders=host&actor_id=0&key_id=0&repo_id=543662060&response-content-disposition=attachment%3B%20filename%3Dzeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl&response-content-type=application%2Foctet-stream 00:59:57 (developers/Python: line 30) ok https://github.com/glencoesoftware/zeroc-ice-py-macos-x86_64/releases/tag/20231130 00:59:57 (developers/Python: line 27) ok https://github.com/glencoesoftware/zeroc-ice-py-win-x86_64/releases/tag/20240325 00:59:57 (sysadmins/version-requirements: line 387) ok https://github.com/glencoesoftware/zeroc-ice-rhel9-x86_64 00:59:57 (sysadmins/version-requirements: line 388) ok https://github.com/glencoesoftware/zeroc-ice-ubuntu2204-x86_64 00:59:57 (sysadmins/limitations: line 61) ok https://github.com/libvips/libvips 00:59:57 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 230) ok https://github.com/jazzband/django-redis 00:59:57 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 105) ok https://github.com/jazzband/django-redis/ 00:59:57 (sysadmins/config: line 2307) redirect https://github.com/ottoyiu/django-cors-headers - permanently to https://github.com/adamchainz/django-cors-headers 00:59:57 (developers/scripts/index: line 49) ok https://github.com/openmicroscopy/omero-example-scripts 00:59:58 (developers/scripts/index: line 51) ok https://github.com/ppouchin/omero-user-scripts 00:59:58 (sysadmins/unix/server-install-homebrew: line 382) redirect https://github.com/mxcl/homebrew/wiki/Bug-Fixing-Checklist - with Found to https://github.com/Homebrew/legacy-homebrew 00:59:58 (developers/build-system: line 12) ok https://gradle.org/ 00:59:58 ( users/history: line 359) ok https://gradle.org 00:59:58 (sysadmins/server-setup-examples: line 125) ok https://idr.openmicroscopy.org/about/deployment 00:59:58 (sysadmins/server-setup-examples: line 125) ok https://idr.openmicroscopy.org/about/studies 00:59:58 (sysadmins/python3-migration: line 59) ok https://hub.docker.com/u/openmicroscopy 00:59:58 (sysadmins/config: line 1859) redirect https://google.github.io/guava/releases/27.1-jre/api/docs/com/google/common/cache/CacheBuilderSpec.html - permanently to https://guava.dev/releases/27.1-jre/api/docs/com/google/common/cache/CacheBuilderSpec.html 00:59:58 (users/clients-overview: line 18) broken https://java.com/ - 403 Client Error: Forbidden for url: https://www.java.com/en/ 00:59:59 (sysadmins/server-setup-examples: line 125) ok https://idr.openmicroscopy.org 00:59:59 ( users/history: line 546) ok https://idr.openmicroscopy.org/ 00:59:59 (developers/GettingStarted: line 60) redirect https://jenkins.io - permanently to https://www.jenkins.io/ 00:59:59 (developers/logging: line 4) ok https://logback.qos.ch/ 00:59:59 (developers/logging: line 32) ok https://logback.qos.ch/manual/configuration.html#autoScan 00:59:59 (sysadmins/config: line 502) ok https://jdbc.postgresql.org/documentation/use/#connecting-to-the-database 00:59:59 (developers/Modules/Search: line 4) ok https://lucene.apache.org 00:59:59 (developers/Modules/Search: line 267) ok https://lucene.apache.org/core/3_6_0/queryparsersyntax.html 00:59:59 (sysadmins/public: line 244) ok https://nginx.org/ 00:59:59 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 208) ok https://nginx.org/en/docs/http/configuring_https_servers.html 00:59:59 (sysadmins/troubleshooting: line 405) ok https://matplotlib.org/ 00:59:59 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 324) ok https://nginx.org/en/docs/http/ngx_http_proxy_module.html#proxy_buffering 00:59:59 (sysadmins/server-performance: line 201) ok https://metrics.dropwizard.io/ 00:59:59 (sysadmins/version-requirements: line 454) ok https://nginx.org/en/download.html 00:59:59 (sysadmins/limitations: line 107) ok https://ngff.openmicroscopy.org/latest/ 00:59:59 ( sysadmins/index: line 5) ok https://omero-guides.readthedocs.io/en/latest/example_facility_manager.html 01:00:00 (sysadmins/restricted-admins: line 248) ok https://omero-guides.readthedocs.io/en/latest/example.html 01:00:00 ( index: line 29) ok https://omero-guides.readthedocs.io/en/latest/ 01:00:00 (sysadmins/public: line 184) ok https://omero-guides.readthedocs.io/en/latest/figure/docs/index.html 01:00:00 (developers/Web/WebGateway: line 9) ok https://omero-guides.readthedocs.io/en/latest/figure/docs/omero_figure.html 01:00:00 (sysadmins/restricted-admins: line 138) ok https://omero-guides.readthedocs.io/en/latest/download/docs/index.html 01:00:00 (sysadmins/restricted-admins: line 299) ok https://omero-guides.readthedocs.io/en/latest/introduction/docs/data-management.html#movedowners 01:00:00 (sysadmins/server-permissions: line 144) ok https://omero-guides.readthedocs.io/en/latest/introduction/docs/data-management.html 01:00:00 (developers/Model/KeyValuePairs: line 87) ok https://omero-guides.readthedocs.io/en/latest/introduction/docs/annotate.html 01:00:00 (sysadmins/restricted-admins: line 315) ok https://omero-guides.readthedocs.io/en/latest/introduction/docs/data-management.html#manage-images-in-datasets-projects 01:00:01 (sysadmins/server-permissions: line 101) ok https://omero-guides.readthedocs.io/en/latest/introduction/docs/data-publication.html 01:00:01 (sysadmins/cli/light-admins: line 4) ok https://omero-guides.readthedocs.io/en/latest/introduction/docs/group-user-management.html 01:00:01 (sysadmins/restricted-admins: line 138) ok https://omero-guides.readthedocs.io/en/latest/iviewer/docs/index.html 01:00:01 (sysadmins/public: line 128) redirect https://omero.lifesci.dundee.ac.uk/pub/schleicher-et-al-2017 - with Found to https://omero.lifesci.dundee.ac.uk/webclient/login/?url=%2Fwebclient%2F%3Fshow%3Dproject-27936 01:00:01 (sysadmins/public: line 156) redirect https://omero.lifesci.dundee.ac.uk - with Found to https://omero.lifesci.dundee.ac.uk/webclient/login/?url=%2Fwebclient%2F 01:00:01 (sysadmins/restricted-admins: line 191) ok https://omero-guides.readthedocs.io/en/latest/upload/docs/import-desktop-client.html#import-for-another-user 01:00:01 (developers/index: line 131) ok https://omero-insight.readthedocs.io/en/latest/ 01:00:01 (sysadmins/public: line 198) redirect https://omero.lifesci.dundee.ac.uk/webclient/?show=project-27917 - with Found to https://omero.lifesci.dundee.ac.uk/webclient/login/?url=%2Fwebclient%2F%3Fshow%3Dproject-27917 01:00:01 (sysadmins/public: line 214) redirect https://omero.lifesci.dundee.ac.uk/webclient/?show=tag-364188 - with Found to https://omero.lifesci.dundee.ac.uk/webclient/login/?url=%2Fwebclient%2F%3Fshow%3Dtag-364188 01:00:01 (sysadmins/public: line 221) redirect https://omero.lifesci.dundee.ac.uk/webclient/?show=project-27936 - with Found to https://omero.lifesci.dundee.ac.uk/webclient/login/?url=%2Fwebclient%2F%3Fshow%3Dproject-27936 01:00:01 (sysadmins/public: line 198) redirect https://omero.lifesci.dundee.ac.uk/webclient/?show=project-27920 - with Found to https://omero.lifesci.dundee.ac.uk/webclient/login/?url=%2Fwebclient%2F%3Fshow%3Dproject-27920 01:00:01 (sysadmins/ansible-docker: line 30) ok https://omero.readthedocs.io/en/stable/sysadmins/unix/server-centos7-ice36.html 01:00:01 (sysadmins/ansible-docker: line 160) ok https://omero.readthedocs.io/en/stable/sysadmins/unix/server-centos7-ice36.html#configuring-omero-server 01:00:01 (developers/Web/CreateApp: line 35) ok https://omero.readthedocs.io/en/latest/developers/Python.html 01:00:01 (sysadmins/ansible-docker: line 31) ok https://omero.readthedocs.io/en/stable/sysadmins/system-requirements.html 01:00:02 (developers/Search/FileParsers: line 24) ok https://pdfbox.apache.org 01:00:02 (developers/Python: line 7) redirect https://omero-py.readthedocs.io/ - with Found to https://omero-py.readthedocs.io/en/stable/ 01:00:02 (sysadmins/ansible-docker: line 4) ok https://omero.readthedocs.io/en/stable/sysadmins 01:00:02 (sysadmins/server-performance: line 174) redirect https://openjdk.java.net/tools/svc/jconsole/ - permanently to https://openjdk.org/tools/svc/jconsole/ 01:00:02 (sysadmins/version-requirements: line 298) ok https://peps.python.org/pep-0569/ 01:00:02 (sysadmins/version-requirements: line 308) ok https://peps.python.org/pep-0619/ 01:00:02 (sysadmins/version-requirements: line 303) ok https://peps.python.org/pep-0596/ 01:00:02 (developers/Python: line 7) ok https://pypi.org 01:00:02 (sysadmins/version-requirements: line 313) ok https://peps.python.org/pep-0664/ 01:00:02 (developers/Web/ReleaseApp: line 21) redirect https://packaging.python.org/guides/distributing-packages-using-setuptools/ - with Found to https://packaging.python.org/en/latest/guides/distributing-packages-using-setuptools/ 01:00:02 (sysadmins/version-requirements: line 318) ok https://peps.python.org/pep-0693/ 01:00:02 (sysadmins/server-upgrade: line 331) ok https://pypi.org/project/omero-certificates/ 01:00:02 (sysadmins/limitations: line 61) ok https://pypi.org/project/tifffile/ 01:00:02 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 344) ok https://pypi.org/project/futures 01:00:03 (sysadmins/client-server-ssl: line 52) ok https://pypi.org/project/zeroc-icecertutils/ 01:00:03 (sysadmins/limitations: line 61) ok https://qupath.github.io/ 01:00:03 (sysadmins/ansible-docker: line 137) ok https://pypi.org/search/?q=omero 01:00:03 (developers/Server/Aop: line 12) ok https://spring.io 01:00:03 (sysadmins/omeroweb-upgrade: line 124) ok https://redis.io/ 01:00:03 (sysadmins/server-ldap: line 56) ok https://spring.io/projects/spring-ldap/ 01:00:03 (developers/testing: line 430) redirect https://pytest.org/ - with Found to https://docs.pytest.org/en/8.2.x/ 01:00:03 (sysadmins/unix/server-install-homebrew: line 432) ok https://stackoverflow.com/questions/25970132/pg-tblspc-missing-after-installation-of-latest-version-of-os-x-yosemite-or-el 01:00:03 (developers/cli/extending: line 16) ok https://pypi.org/search/?q=omero+cli 01:00:04 (sysadmins/troubleshooting: line 407) redirect https://pillow.readthedocs.org - with Found to https://pillow.readthedocs.io/en/stable/ 01:00:04 (sysadmins/omeroweb-upgrade: line 4) ok https://trello.com/b/4EXb35xQ/getting-started 01:00:04 (sysadmins/server-syslog: line 47) redirect https://tools.ietf.org/html/rfc3164 - permanently to https://datatracker.ietf.org/doc/html/rfc3164 01:00:04 (sysadmins/server-performance: line 160) ok https://visualvm.github.io/ 01:00:04 (sysadmins/server-ldap: line 336) redirect https://technet.microsoft.com/en-us/library/cc728188(v=ws.10).aspx - permanently to https://learn.microsoft.com/en-us/previous-versions/windows/it-pro/windows-server-2003/cc728188(v=ws.10)?redirectedfrom=MSDN 01:00:04 (sysadmins/version-requirements: line 454) ok https://trac.nginx.org/nginx/roadmap 01:00:04 (sysadmins/ansible-docker: line 26) ok https://www.ansible.com/ 01:00:05 (sysadmins/version-requirements: line 88) ok https://www.centos.org/ 01:00:05 (sysadmins/server-setup-examples: line 68) redirect https://www.biozentrum.unibas.ch/imcf - permanently to https://www.biozentrum.unibas.ch/facilities/technology-platforms/technology-platforms-a-z/overview/unit/imaging-core-facility 01:00:05 ( developers/Cpp: line 291) redirect https://www.cmake.org/cmake/help/v3.0/ - permanently to https://cmake.org/cmake/help/v3.0/ 01:00:05 (sysadmins/unix/install-web/web-deployment: line 11) redirect https://wsgi.readthedocs.org - with Found to https://wsgi.readthedocs.io/en/latest/ 01:00:05 ( developers/Cpp: line 141) redirect https://www.cmake.org/cmake/help/documentation.html - permanently to https://cmake.org/documentation/ 01:00:06 ( developers/Web: line 9) ok https://www.djangoproject.com/ 01:00:06 (sysadmins/unix/server-installation: line 180) ok https://wiki.ubuntu.com/Releases 01:00:06 ( developers/Cpp: line 291) redirect https://www.cmake.org/cmake/help/v3.0/manual/cmake-variables.7.html#variables-that-change-behavior - permanently to https://cmake.org/cmake/help/v3.0/manual/cmake-variables.7.html#variables-that-change-behavior 01:00:06 (sysadmins/unix/server-postgresql: line 34) ok https://www.enterprisedb.com/ 01:00:06 (developers/Clients/ImportLibrary: line 32) ok https://www.glencoesoftware.com/ 01:00:06 (sysadmins/limitations: line 61) ok https://www.glencoesoftware.com/blog/2019/12/09/converting-whole-slide-images-to-OME-TIFF.html 01:00:06 (developers/Python: line 12) ok https://www.glencoesoftware.com/blog/2023/12/08/ice-binaries-for-omero.html 01:00:07 (sysadmins/limitations: line 61) ok https://www.glencoesoftware.com/products/ngff-converter/ 01:00:07 (developers/index: line 28) ok https://www.gnu.org/licenses/licenses.html#GPL 01:00:07 (sysadmins/system-requirements: line 56) ok https://www.cpubenchmark.net/singleThread.html#server-thread 01:00:07 (sysadmins/server-setup-examples: line 7) redirect https://www.cellnanos.uni-osnabrueck.de/en/startpage.html - temporarily to https://www.cellnanos.uni-osnabrueck.de/en/home.html 01:00:07 ( users/history: line 845) ok https://www.janelia.org/ 01:00:08 (sysadmins/server-setup-examples: line 100) redirect https://www.gred-clermont.fr - permanently to https://www.igred.fr/ 01:00:08 (developers/scripts/matlab-scripts: line 10) ok https://www.mathworks.com/help/matlab/matlab_external/install-the-matlab-engine-for-python.html 01:00:08 (developers/Server/Context: line 21) ok https://www.martinfowler.com/eaaCatalog/unitOfWork.html 01:00:08 (sysadmins/server-security: line 31) ok https://www.iana.org/assignments/service-names-port-numbers/service-names-port-numbers.xml 01:00:08 (developers/Clients/ImportLibrary: line 31) ok https://www.openmicroscopy.org 01:00:08 ( users/history: line 1173) ok https://www.openmicroscopy.org/2015/12/07/bio-formats-5-1-7.html 01:00:08 ( users/history: line 1144) ok https://www.openmicroscopy.org/2016/02/15/bio-formats-5-1-8.html 01:00:08 ( users/history: line 1099) ok https://www.openmicroscopy.org/2016/04/18/bio-formats-5-1-9.html 01:00:08 ( users/history: line 1014) ok https://www.openmicroscopy.org/2016/05/09/bio-formats-5-1-10.html 01:00:08 ( users/history: line 918) ok https://www.openmicroscopy.org/2017/04/13/bio-formats-5-4-1.html 01:00:08 ( users/history: line 901) ok https://www.openmicroscopy.org/2017/05/08/bio-formats-5-5-0.html 01:00:08 ( users/history: line 867) ok https://www.openmicroscopy.org/2017/06/15/bio-formats-5-5-2.html 01:00:08 ( users/history: line 833) ok https://www.openmicroscopy.org/2017/07/05/bio-formats-5-5-3.html 01:00:08 ( users/history: line 817) ok https://www.openmicroscopy.org/2017/09/20/bio-formats-5-7-1.html 01:00:08 (sysadmins/limitations: line 61) ok https://www.openmicroscopy.org/2018/11/29/ometiffpyramid.html 01:00:08 (sysadmins/server-performance: line 187) ok https://www.nagios.org/ 01:00:08 ( index: line 39) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2016-06/ome.html 01:00:08 (developers/Model/StructuredAnnotations: line 62) ok https://www.openmicroscopy.org/Schemas/Documentation/Generated/OME-2013-06/SA_xsd.html#Annotation 01:00:08 (users/community-resources: line 14) ok https://www.openmicroscopy.org/bio-formats 01:00:08 (users/community-resources: line 23) redirect https://www.openmicroscopy.org/community/ - permanently to https://www.openmicroscopy.org/community/index.php 01:00:08 (sysadmins/server-performance: line 149) ok https://www.openmicroscopy.org/community/viewtopic.php?f=4&t=7400 01:00:08 (sysadmins/server-ldap: line 315) ok https://www.openmicroscopy.org/community/viewtopic.php?f=5&t=14 01:00:08 (sysadmins/dropbox: line 152) ok https://www.openmicroscopy.org/community/viewtopic.php?f=4&t=7810#p15910 01:00:08 (sysadmins/unix/server-installation: line 452) ok https://www.openmicroscopy.org/community/viewtopic.php?f=5&t=360#p922 01:00:08 (sysadmins/troubleshooting: line 282) ok https://www.openmicroscopy.org/community/viewtopic.php?f=5&t=7537 01:00:08 (sysadmins/server-upgrade: line 255) ok https://www.openmicroscopy.org/community/viewtopic.php?f=5&t=7778 01:00:08 (sysadmins/troubleshooting: line 284) ok https://www.openmicroscopy.org/community/viewtopic.php?f=6&t=7722&p=15264&hilit=CheckedPath#p15264 01:00:08 ( users/index: line 59) ok https://www.openmicroscopy.org/explore/ 01:00:08 (users/clients-overview: line 28) ok https://www.openmicroscopy.org/omero/analyze 01:00:08 (sysadmins/ansible-docker: line 32) ok https://www.openmicroscopy.org/omero/apps/ 01:00:08 (developers/Matlab: line 12) ok https://www.openmicroscopy.org/omero/downloads/ 01:00:08 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 77) ok https://www.openmicroscopy.org/omero/figure/ 01:00:08 (sysadmins/ansible-docker: line 25) ok https://www.openmicroscopy.org/omero/institution/getting-started.html 01:00:09 (sysadmins/public: line 97) ok https://www.openmicroscopy.org/omero/iviewer/ 01:00:09 ( users/index: line 54) ok https://www.openmicroscopy.org/omero/new 01:00:09 ( users/index: line 54) ok https://www.openmicroscopy.org/omero/scientists 01:00:09 (sysadmins/server-security: line 21) ok https://www.openmicroscopy.org/security/ 01:00:09 ( index: line 28) ok https://www.openmicroscopy.org/security/advisories/ 01:00:09 ( users/history: line 1720) ok https://www.openmicroscopy.org/security/advisories/2012-SV1-ldap-authentication 01:00:09 ( users/history: line 1552) ok https://www.openmicroscopy.org/security/advisories/2014-SV1-unicode-passwords 01:00:09 ( users/history: line 1553) ok https://www.openmicroscopy.org/security/advisories/2014-SV2-empty-passwords 01:00:09 ( users/history: line 1513) ok https://www.openmicroscopy.org/security/advisories/2014-SV3-csrf 01:00:09 ( users/history: line 1514) ok https://www.openmicroscopy.org/security/advisories/2014-SV4-poodle 01:00:09 ( users/history: line 1058) ok https://www.openmicroscopy.org/security/advisories/2016-SV1-cleanse 01:00:09 ( users/history: line 1043) ok https://www.openmicroscopy.org/security/advisories/2016-SV2-share 01:00:09 ( users/history: line 996) ok https://www.openmicroscopy.org/security/advisories/2017-SV1-filename 01:00:09 ( users/history: line 1000) ok https://www.openmicroscopy.org/security/advisories/2017-SV2-edit-rw 01:00:09 ( users/history: line 1003) ok https://www.openmicroscopy.org/security/advisories/2017-SV3-delete-script 01:00:09 ( users/history: line 822) ok https://www.openmicroscopy.org/security/advisories/2017-SV4-guest-user 01:00:09 (sysadmins/server-upgrade: line 134) ok https://www.openmicroscopy.org/security/advisories/2017-SV5-filename-2 01:00:09 ( users/history: line 607) ok https://www.openmicroscopy.org/security/advisories/2017-SV6-job-file-link 01:00:09 (developers/Modules/Api: line 28) ok https://www.openmicroscopy.org/support/ 01:00:09 (sysadmins/server-backup-and-restore: line 162) redirect https://www.nongnu.org/rdiff-backup/docs.html - with Found to https://rdiff-backup.net/ 01:00:09 (sysadmins/version-requirements: line 395) ok https://www.oracle.com/technetwork/java/eol-135779.html 01:00:09 (developers/Server/ExtendingOmero: line 329) redirect https://www.nginx.com/resources/wiki/ - permanently to https://docs.nginx.com 01:00:09 (sysadmins/in-place-import: line 292) ok https://www.openwall.com/lists/kernel-hardening/2012/02/21/20 01:00:09 (sysadmins/unix/server-installation: line 124) redirect https://www.oracle.com/technetwork/java/javase/downloads/index.html - permanently to https://www.oracle.com/java/technologies/downloads/?er=221886 01:00:09 (sysadmins/version-requirements: line 446) redirect https://www.oracle.com/technetwork/java/javase/downloads/index-jsp-138363.html - permanently to https://www.oracle.com/java/technologies/downloads/?er=221886 01:00:09 (developers/Server/ExtendingOmero: line 6) redirect https://www.openmicroscopy.org/forums - permanently to https://forum.image.sc/c/data-management/29 01:00:09 (developers/Web/LinkingFromWebclient: line 86) ok https://www.ncbi.nlm.nih.gov/protein/000397 01:00:10 (developers/Server: line 32) redirect https://www.oracle.com/technetwork/java/javaee/ejb/index.html - permanently to https://www.oracle.com/java/technologies/enterprise-javabeans-technology.html 01:00:10 (sysadmins/unix/server-postgresql: line 145) redirect https://www.postgresql.org/docs/current/interactive/client-authentication.html - permanently to https://www.postgresql.org/docs/current/client-authentication.html 01:00:10 (developers/GettingStarted: line 126) ok https://www.pgadmin.org/ 01:00:10 (sysadmins/unix/server-postgresql: line 143) redirect https://www.postgresql.org/docs/current/interactive/runtime-config-connection.html - permanently to https://www.postgresql.org/docs/current/runtime-config-connection.html 01:00:10 ( users/cli/index: line 4) ok https://www.python.org 01:00:10 (sysadmins/version-requirements: line 264) ok https://www.postgresql.org/download/ 01:00:10 (sysadmins/server-backup-and-restore: line 112) ok https://www.postgresql.org/docs/10/backup.html 01:00:10 (sysadmins/version-requirements: line 288) redirect https://www.python.org/dev/peps/pep-0494/ - with Found to https://peps.python.org/pep-0494/ 01:00:10 (sysadmins/unix/server-postgresql: line 12) ok https://www.postgresql.org/support/versioning/ 01:00:10 (sysadmins/unix/server-postgresql: line 140) redirect https://www.postgresql.org/docs/current/interactive/index.html - permanently to https://www.postgresql.org/docs/current/index.html 01:00:10 (sysadmins/version-requirements: line 293) redirect https://www.python.org/dev/peps/pep-0537/ - with Found to https://peps.python.org/pep-0537/ 01:00:11 (developers/logging: line 4) ok https://www.slf4j.org 01:00:11 (developers/Web/CSRF: line 14) ok https://www.rfc-editor.org/rfc/rfc2616.html#section-9.1.1 01:00:11 (sysadmins/config: line 1446) ok https://www.quartz-scheduler.org/api/1.8.6/org/quartz/CronExpression.html 01:00:11 (sysadmins/config: line 2395) ok https://www.w3.org/TR/referrer-policy/#referrer-policies 01:00:11 (developers/GettingStarted/AdvancedClientDevelopment: line 19) ok https://www.scons.org 01:00:12 (sysadmins/version-requirements: line 254) redirect https://yum.postgresql.org/14/redhat/rhel-9-x86_64/ - permanently to https://download.postgresql.org/pub/repos/yum/14/redhat/rhel-9-x86_64/ 01:00:12 (sysadmins/version-requirements: line 257) redirect https://yum.postgresql.org/15/redhat/rhel-9-x86_64/ - permanently to https://download.postgresql.org/pub/repos/yum/15/redhat/rhel-9-x86_64/ 01:00:12 (sysadmins/server-syslog: line 52) ok https://www.splunk.com/ 01:00:12 (sysadmins/version-requirements: line 260) redirect https://yum.postgresql.org/16/redhat/rhel-9-x86_64/ - permanently to https://download.postgresql.org/pub/repos/yum/16/redhat/rhel-9-x86_64/ 01:00:12 (developers/Python: line 7) ok https://zeroc.com/ice/downloads/3.6 01:00:12 ( developers/Cpp: line 4) ok https://zeroc.com 01:00:12 ( developers/Web: line 29) redirect https://zeroc.com/products/ice - permanently to https://zeroc.com/ice 01:00:13 (sysadmins/unix/server-installation: line 190) redirect https://zeroc.com/downloads/ice - temporarily to https://zeroc.com/ice/downloads/3.7 01:00:13 Adding redirects: 01:00:13 build finished with problems. 01:00:13 make: *** [../Makefile:159: linkcheck] Error 1 01:00:13 Build step 'Execute shell' marked build as failure 01:00:13 Archiving artifacts 01:00:15 Finished: FAILURE