07:12:20 Started by upstream project "Trigger" build number 252
07:12:20 originally caused by:
07:12:20 Started by user devspace
07:12:20 Running as SYSTEM
07:12:20 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-docs
07:12:20 The recommended git tool is: NONE
07:12:20 No credentials specified
07:12:20 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-docs/.git # timeout=10
07:12:20 Fetching changes from the remote Git repository
07:12:20 > git config remote.origin.url https://github.com/ome/ome-documentation # timeout=10
07:12:20 Fetching upstream changes from https://github.com/ome/ome-documentation
07:12:20 > git --version # timeout=10
07:12:20 > git --version # 'git version 2.43.5'
07:12:20 > git fetch --tags --force --progress -- https://github.com/ome/ome-documentation +refs/heads/*:refs/remotes/origin/* # timeout=10
07:12:22 > git rev-parse origin/develop^{commit} # timeout=10
07:12:22 Checking out Revision cb4539fd134f8110acd7d9aa09bd9329b99c015c (origin/develop)
07:12:22 > git config core.sparsecheckout # timeout=10
07:12:22 > git checkout -f cb4539fd134f8110acd7d9aa09bd9329b99c015c # timeout=10
07:12:24 Commit message: "Merge pull request #2455 from ome/create-pull-request/patch"
07:12:24 > git rev-list --no-walk cb4539fd134f8110acd7d9aa09bd9329b99c015c # timeout=10
07:12:24 Cleaning workspace
07:12:24 > git rev-parse --verify HEAD # timeout=10
07:12:24 Resetting working tree
07:12:24 > git reset --hard # timeout=10
07:12:24 > git clean -fdx # timeout=10
07:12:25 [OMERO-docs] $ /bin/bash -xe /tmp/jenkins2072167383677511958.sh
07:12:25 + python3 -mvenv venv
07:12:28 + source /home/omero/workspace/OMERO-docs/venv/bin/activate
07:12:28 ++ deactivate nondestructive
07:12:28 ++ '[' -n '' ']'
07:12:28 ++ '[' -n '' ']'
07:12:28 ++ '[' -n /bin/bash -o -n '' ']'
07:12:28 ++ hash -r
07:12:28 ++ '[' -n '' ']'
07:12:28 ++ unset VIRTUAL_ENV
07:12:28 ++ '[' '!' nondestructive = nondestructive ']'
07:12:28 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-docs/venv
07:12:28 ++ export VIRTUAL_ENV
07:12:28 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
07:12:28 ++ PATH=/home/omero/workspace/OMERO-docs/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
07:12:28 ++ export PATH
07:12:28 ++ '[' -n '' ']'
07:12:28 ++ '[' -z '' ']'
07:12:28 ++ _OLD_VIRTUAL_PS1=
07:12:28 ++ PS1='(venv) '
07:12:28 ++ export PS1
07:12:28 ++ '[' -n /bin/bash -o -n '' ']'
07:12:28 ++ hash -r
07:12:28 + pip install -U pip
07:12:28 Requirement already satisfied: pip in ./venv/lib/python3.9/site-packages (21.2.3)
07:12:28 Collecting pip
07:12:28 Using cached pip-24.2-py3-none-any.whl (1.8 MB)
07:12:28 Installing collected packages: pip
07:12:28 Attempting uninstall: pip
07:12:28 Found existing installation: pip 21.2.3
07:12:28 Uninstalling pip-21.2.3:
07:12:28 Successfully uninstalled pip-21.2.3
07:12:29 Successfully installed pip-24.2
07:12:29 + pip install -U scc
07:12:30 Collecting scc
07:12:30 Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB)
07:12:30 Collecting PyGithub>=1.54 (from scc)
07:12:30 Using cached PyGithub-2.4.0-py3-none-any.whl.metadata (3.9 kB)
07:12:30 Collecting PyYAML>=5.1 (from scc)
07:12:30 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
07:12:30 Collecting future (from scc)
07:12:30 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
07:12:30 Collecting ruamel.yaml (from scc)
07:12:30 Using cached ruamel.yaml-0.18.6-py3-none-any.whl.metadata (23 kB)
07:12:30 Collecting ruamel.yaml.jinja2 (from scc)
07:12:30 Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB)
07:12:30 Collecting six (from scc)
07:12:30 Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB)
07:12:30 Collecting urllib3<2 (from scc)
07:12:30 Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB)
07:12:31 Collecting yaclifw<0.3,>=0.2.0 (from scc)
07:12:31 Using cached yaclifw-0.2.0-py3-none-any.whl
07:12:31 Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc)
07:12:31 Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl.metadata (8.6 kB)
07:12:31 Collecting requests>=2.14.0 (from PyGithub>=1.54->scc)
07:12:31 Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB)
07:12:31 Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
07:12:31 Using cached PyJWT-2.9.0-py3-none-any.whl.metadata (3.0 kB)
07:12:31 Collecting typing-extensions>=4.0.0 (from PyGithub>=1.54->scc)
07:12:31 Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB)
07:12:31 Collecting Deprecated (from PyGithub>=1.54->scc)
07:12:31 Using cached Deprecated-1.2.14-py2.py3-none-any.whl.metadata (5.4 kB)
07:12:31 Collecting ruamel.yaml.clib>=0.2.7 (from ruamel.yaml->scc)
07:12:31 Using cached ruamel.yaml.clib-0.2.8-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl.metadata (2.2 kB)
07:12:31 Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
07:12:31 Using cached cryptography-43.0.1-cp39-abi3-manylinux_2_28_x86_64.whl.metadata (5.4 kB)
07:12:31 Collecting cffi>=1.4.1 (from pynacl>=1.4.0->PyGithub>=1.54->scc)
07:12:31 Using cached cffi-1.17.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (1.5 kB)
07:12:31 Collecting charset-normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc)
07:12:31 Using cached charset_normalizer-3.4.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (34 kB)
07:12:32 Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc)
07:12:32 Using cached idna-3.10-py3-none-any.whl.metadata (10 kB)
07:12:32 Collecting certifi>=2017.4.17 (from requests>=2.14.0->PyGithub>=1.54->scc)
07:12:32 Using cached certifi-2024.8.30-py3-none-any.whl.metadata (2.2 kB)
07:12:32 Collecting wrapt<2,>=1.10 (from Deprecated->PyGithub>=1.54->scc)
07:12:32 Using cached wrapt-1.16.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB)
07:12:32 Collecting pycparser (from cffi>=1.4.1->pynacl>=1.4.0->PyGithub>=1.54->scc)
07:12:32 Using cached pycparser-2.22-py3-none-any.whl.metadata (943 bytes)
07:12:32 Using cached scc-0.20.0-py3-none-any.whl (48 kB)
07:12:32 Using cached PyGithub-2.4.0-py3-none-any.whl (362 kB)
07:12:32 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (737 kB)
07:12:32 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
07:12:32 Using cached future-1.0.0-py3-none-any.whl (491 kB)
07:12:32 Using cached ruamel.yaml-0.18.6-py3-none-any.whl (117 kB)
07:12:32 Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB)
07:12:32 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
07:12:32 Using cached PyJWT-2.9.0-py3-none-any.whl (22 kB)
07:12:32 Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (856 kB)
07:12:32 Using cached requests-2.32.3-py3-none-any.whl (64 kB)
07:12:32 Using cached ruamel.yaml.clib-0.2.8-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl (562 kB)
07:12:32 Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB)
07:12:32 Using cached Deprecated-1.2.14-py2.py3-none-any.whl (9.6 kB)
07:12:32 Using cached certifi-2024.8.30-py3-none-any.whl (167 kB)
07:12:32 Using cached cffi-1.17.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (445 kB)
07:12:32 Using cached charset_normalizer-3.4.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (144 kB)
07:12:32 Using cached cryptography-43.0.1-cp39-abi3-manylinux_2_28_x86_64.whl (4.0 MB)
07:12:32 Using cached idna-3.10-py3-none-any.whl (70 kB)
07:12:32 Using cached wrapt-1.16.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (80 kB)
07:12:32 Using cached pycparser-2.22-py3-none-any.whl (117 kB)
07:12:32 Installing collected packages: wrapt, urllib3, typing-extensions, six, ruamel.yaml.clib, PyYAML, pyjwt, pycparser, idna, future, charset-normalizer, certifi, yaclifw, ruamel.yaml, requests, Deprecated, cffi, ruamel.yaml.jinja2, pynacl, cryptography, PyGithub, scc
07:12:34 Successfully installed Deprecated-1.2.14 PyGithub-2.4.0 PyYAML-6.0.2 certifi-2024.8.30 cffi-1.17.1 charset-normalizer-3.4.0 cryptography-43.0.1 future-1.0.0 idna-3.10 pycparser-2.22 pyjwt-2.9.0 pynacl-1.5.0 requests-2.32.3 ruamel.yaml-0.18.6 ruamel.yaml.clib-0.2.8 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.16.0 typing-extensions-4.12.2 urllib3-1.26.20 wrapt-1.16.0 yaclifw-0.2.0
07:12:34 + test -e src
07:12:34 + scc merge develop --no-ask --reset --comment -S success-only --push merge_ci
07:12:36 Following Github server redirection from /repos/ome/ome-documentation to /repositories/3198415
07:12:36 2024-10-18 07:12:36,392 [github.Reque] INFO Following Github server redirection from /repos/ome/ome-documentation to /repositories/3198415
07:12:38 2024-10-18 07:12:38,473 [ scc.merge] INFO Merging Pull Request(s) based on develop
07:12:38 2024-10-18 07:12:38,473 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
07:12:38 2024-10-18 07:12:38,474 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
07:12:38 2024-10-18 07:12:38,474 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
07:12:38 2024-10-18 07:12:38,474 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
07:12:38 2024-10-18 07:12:38,474 [ scc.merge] INFO Excluding Pull Request(s) without successful status
07:12:56 2024-10-18 07:12:56,945 [ scc.git] INFO - PR 2353 jburel 'Mencoder'
07:12:56 Conflicting PR. Removed from build [OMERO-docs#212](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-docs/212/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-docs/212/consoleText) for more details.
07:12:56 Possible conflicts:
07:12:56 - Upstream changes
07:12:56 - omero/sysadmins/omeromovie.rst
07:12:56
07:12:56 --conflicts
07:12:56
07:12:58 2024-10-18 07:12:58,071 [ scc.merge] INFO Repository: ome/ome-documentation
07:12:58 2024-10-18 07:12:58,071 [ scc.merge] INFO Excluded PRs:
07:12:58 2024-10-18 07:12:58,071 [ scc.merge] INFO - PR 2454 tstoeter 'Fix small typo in URL' (user: tstoeter)
07:12:58 2024-10-18 07:12:58,071 [ scc.merge] INFO - PR 2393 bernt-matthias 'fix option capitalization' (user: bernt-matthias)
07:12:58 2024-10-18 07:12:58,071 [ scc.merge] INFO - PR 2357 fmeyenhofer 'Add a OMERO.table visualisation example' (user: fmeyenhofer)
07:12:58 2024-10-18 07:12:58,071 [ scc.merge] INFO - PR 2347 jburel 'pin version to match rtd ones' (exclude comment)
07:12:58 2024-10-18 07:12:58,071 [ scc.merge] INFO - PR 2298 pwalczysko 'test' (exclude comment)
07:12:58 2024-10-18 07:12:58,071 [ scc.merge] INFO - PR 2291 pwalczysko 'Add ansible and docker install doc - former "install.rst"' (status: failure)
07:12:58 2024-10-18 07:12:58,071 [ scc.merge] INFO Already up to date.
07:12:58 2024-10-18 07:12:58,071 [ scc.merge] INFO
07:12:58 2024-10-18 07:12:58,071 [ scc.merge] INFO Merged PRs:
07:12:58 2024-10-18 07:12:58,071 [ scc.merge] INFO - PR 2355 will-moore 'Update python Tables code to use 'Image' column'
07:12:58 2024-10-18 07:12:58,071 [ scc.merge] INFO - PR 2456 sbesson 'Tables slice documentation'
07:12:58 2024-10-18 07:12:58,071 [ scc.merge] INFO
07:12:58 2024-10-18 07:12:58,071 [ scc.merge] INFO Conflicting PRs (not included):
07:12:58 2024-10-18 07:12:58,071 [ scc.merge] INFO - PR 2353 jburel 'Mencoder'
07:12:58 2024-10-18 07:12:58,071 [ scc.merge] INFO
07:13:00 2024-10-18 07:13:00,222 [ scc.merge] INFO Merged branch pushed to https://github.com/snoopycrimecop/ome-documentation/tree/merge_ci
07:13:00 [OMERO-docs] $ /bin/bash -xe /tmp/jenkins8998315443793108196.sh
07:13:00 + source /home/omero/workspace/OMERO-docs/venv/bin/activate
07:13:00 ++ deactivate nondestructive
07:13:00 ++ '[' -n '' ']'
07:13:00 ++ '[' -n '' ']'
07:13:00 ++ '[' -n /bin/bash -o -n '' ']'
07:13:00 ++ hash -r
07:13:00 ++ '[' -n '' ']'
07:13:00 ++ unset VIRTUAL_ENV
07:13:00 ++ '[' '!' nondestructive = nondestructive ']'
07:13:00 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-docs/venv
07:13:00 ++ export VIRTUAL_ENV
07:13:00 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
07:13:00 ++ PATH=/home/omero/workspace/OMERO-docs/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
07:13:00 ++ export PATH
07:13:00 ++ '[' -n '' ']'
07:13:00 ++ '[' -z '' ']'
07:13:00 ++ _OLD_VIRTUAL_PS1=
07:13:00 ++ PS1='(venv) '
07:13:00 ++ export PS1
07:13:00 ++ '[' -n /bin/bash -o -n '' ']'
07:13:00 ++ hash -r
07:13:00 + pip install -r requirements.txt
07:13:00 Collecting sphinx==5.3.0 (from -r requirements.txt (line 1))
07:13:00 Using cached sphinx-5.3.0-py3-none-any.whl.metadata (6.4 kB)
07:13:00 Collecting sphinx_rtd_theme==1.1.1 (from -r requirements.txt (line 2))
07:13:01 Using cached sphinx_rtd_theme-1.1.1-py2.py3-none-any.whl.metadata (4.4 kB)
07:13:01 Collecting sphinxcontrib-applehelp (from sphinx==5.3.0->-r requirements.txt (line 1))
07:13:01 Using cached sphinxcontrib_applehelp-2.0.0-py3-none-any.whl.metadata (2.3 kB)
07:13:01 Collecting sphinxcontrib-devhelp (from sphinx==5.3.0->-r requirements.txt (line 1))
07:13:01 Using cached sphinxcontrib_devhelp-2.0.0-py3-none-any.whl.metadata (2.3 kB)
07:13:01 Collecting sphinxcontrib-jsmath (from sphinx==5.3.0->-r requirements.txt (line 1))
07:13:01 Using cached sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl.metadata (1.4 kB)
07:13:01 Collecting sphinxcontrib-htmlhelp>=2.0.0 (from sphinx==5.3.0->-r requirements.txt (line 1))
07:13:01 Using cached sphinxcontrib_htmlhelp-2.1.0-py3-none-any.whl.metadata (2.3 kB)
07:13:01 Collecting sphinxcontrib-serializinghtml>=1.1.5 (from sphinx==5.3.0->-r requirements.txt (line 1))
07:13:01 Using cached sphinxcontrib_serializinghtml-2.0.0-py3-none-any.whl.metadata (2.4 kB)
07:13:01 Collecting sphinxcontrib-qthelp (from sphinx==5.3.0->-r requirements.txt (line 1))
07:13:01 Using cached sphinxcontrib_qthelp-2.0.0-py3-none-any.whl.metadata (2.3 kB)
07:13:01 Collecting Jinja2>=3.0 (from sphinx==5.3.0->-r requirements.txt (line 1))
07:13:01 Using cached jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB)
07:13:02 Collecting Pygments>=2.12 (from sphinx==5.3.0->-r requirements.txt (line 1))
07:13:02 Using cached pygments-2.18.0-py3-none-any.whl.metadata (2.5 kB)
07:13:02 Collecting docutils<0.20,>=0.14 (from sphinx==5.3.0->-r requirements.txt (line 1))
07:13:02 Using cached docutils-0.19-py3-none-any.whl.metadata (2.7 kB)
07:13:02 Collecting snowballstemmer>=2.0 (from sphinx==5.3.0->-r requirements.txt (line 1))
07:13:02 Using cached snowballstemmer-2.2.0-py2.py3-none-any.whl.metadata (6.5 kB)
07:13:02 Collecting babel>=2.9 (from sphinx==5.3.0->-r requirements.txt (line 1))
07:13:02 Using cached babel-2.16.0-py3-none-any.whl.metadata (1.5 kB)
07:13:02 Collecting alabaster<0.8,>=0.7 (from sphinx==5.3.0->-r requirements.txt (line 1))
07:13:02 Using cached alabaster-0.7.16-py3-none-any.whl.metadata (2.9 kB)
07:13:02 Collecting imagesize>=1.3 (from sphinx==5.3.0->-r requirements.txt (line 1))
07:13:02 Using cached imagesize-1.4.1-py2.py3-none-any.whl.metadata (1.5 kB)
07:13:02 Requirement already satisfied: requests>=2.5.0 in ./venv/lib/python3.9/site-packages (from sphinx==5.3.0->-r requirements.txt (line 1)) (2.32.3)
07:13:02 Collecting packaging>=21.0 (from sphinx==5.3.0->-r requirements.txt (line 1))
07:13:02 Using cached packaging-24.1-py3-none-any.whl.metadata (3.2 kB)
07:13:02 Collecting importlib-metadata>=4.8 (from sphinx==5.3.0->-r requirements.txt (line 1))
07:13:02 Using cached importlib_metadata-8.5.0-py3-none-any.whl.metadata (4.8 kB)
07:13:02 Collecting docutils<0.20,>=0.14 (from sphinx==5.3.0->-r requirements.txt (line 1))
07:13:02 Using cached docutils-0.17.1-py2.py3-none-any.whl.metadata (2.9 kB)
07:13:02 Collecting zipp>=3.20 (from importlib-metadata>=4.8->sphinx==5.3.0->-r requirements.txt (line 1))
07:13:02 Using cached zipp-3.20.2-py3-none-any.whl.metadata (3.7 kB)
07:13:03 Collecting MarkupSafe>=2.0 (from Jinja2>=3.0->sphinx==5.3.0->-r requirements.txt (line 1))
07:13:03 Using cached MarkupSafe-3.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.0 kB)
07:13:03 Requirement already satisfied: charset-normalizer<4,>=2 in ./venv/lib/python3.9/site-packages (from requests>=2.5.0->sphinx==5.3.0->-r requirements.txt (line 1)) (3.4.0)
07:13:03 Requirement already satisfied: idna<4,>=2.5 in ./venv/lib/python3.9/site-packages (from requests>=2.5.0->sphinx==5.3.0->-r requirements.txt (line 1)) (3.10)
07:13:03 Requirement already satisfied: urllib3<3,>=1.21.1 in ./venv/lib/python3.9/site-packages (from requests>=2.5.0->sphinx==5.3.0->-r requirements.txt (line 1)) (1.26.20)
07:13:03 Requirement already satisfied: certifi>=2017.4.17 in ./venv/lib/python3.9/site-packages (from requests>=2.5.0->sphinx==5.3.0->-r requirements.txt (line 1)) (2024.8.30)
07:13:03 Using cached sphinx-5.3.0-py3-none-any.whl (3.2 MB)
07:13:03 Using cached sphinx_rtd_theme-1.1.1-py2.py3-none-any.whl (2.8 MB)
07:13:03 Using cached alabaster-0.7.16-py3-none-any.whl (13 kB)
07:13:03 Using cached babel-2.16.0-py3-none-any.whl (9.6 MB)
07:13:03 Using cached docutils-0.17.1-py2.py3-none-any.whl (575 kB)
07:13:04 Using cached imagesize-1.4.1-py2.py3-none-any.whl (8.8 kB)
07:13:04 Using cached importlib_metadata-8.5.0-py3-none-any.whl (26 kB)
07:13:04 Using cached jinja2-3.1.4-py3-none-any.whl (133 kB)
07:13:04 Using cached packaging-24.1-py3-none-any.whl (53 kB)
07:13:04 Using cached pygments-2.18.0-py3-none-any.whl (1.2 MB)
07:13:04 Using cached snowballstemmer-2.2.0-py2.py3-none-any.whl (93 kB)
07:13:04 Using cached sphinxcontrib_htmlhelp-2.1.0-py3-none-any.whl (98 kB)
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07:13:04 Using cached sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl (5.1 kB)
07:13:04 Using cached sphinxcontrib_qthelp-2.0.0-py3-none-any.whl (88 kB)
07:13:04 Using cached MarkupSafe-3.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (20 kB)
07:13:04 Using cached zipp-3.20.2-py3-none-any.whl (9.2 kB)
07:13:04 Installing collected packages: snowballstemmer, zipp, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, Pygments, packaging, MarkupSafe, imagesize, docutils, babel, alabaster, Jinja2, importlib-metadata, sphinx, sphinx_rtd_theme
07:13:07 Successfully installed Jinja2-3.1.4 MarkupSafe-3.0.1 Pygments-2.18.0 alabaster-0.7.16 babel-2.16.0 docutils-0.17.1 imagesize-1.4.1 importlib-metadata-8.5.0 packaging-24.1 snowballstemmer-2.2.0 sphinx-5.3.0 sphinx_rtd_theme-1.1.1 sphinxcontrib-applehelp-2.0.0 sphinxcontrib-devhelp-2.0.0 sphinxcontrib-htmlhelp-2.1.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-2.0.0 sphinxcontrib-serializinghtml-2.0.0 zipp-3.20.2
07:13:07 + cd omero
07:13:07 + make clean html linkcheck
07:13:07 rm -rf _build/*
07:13:07 sphinx-build -b html -d _build/doctrees . _build/html
07:13:08 Running Sphinx v5.3.0
07:13:08 making output directory... done
07:13:08 building [mo]: targets for 0 po files that are out of date
07:13:08 building [html]: targets for 159 source files that are out of date
07:13:08 updating environment: [new config] 159 added, 0 changed, 0 removed
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07:13:48 (developers/analysis: line 53) redirect http://cvs.openmicroscopy.org.uk/snapshots/movies/omero-4-1/mov/FlexPreview4.1-configuration.mov - permanently to https://downloads.openmicroscopy.org/movies/omero-4-1/mov/FlexPreview4.1-configuration.mov
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07:13:48 (sysadmins/version-requirements: line 493) ok http://nginx.org/packages/centos/9/x86_64/
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07:14:03 (developers/Model/Containers: line 8) redirect https://docs.openmicroscopy.org/latest/ome-model/developers/model-overview.html - with Found to https://ome-model.readthedocs.io/en/stable/developers/model-overview.html
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07:14:04 (sysadmins/server-upgrade: line 17) redirect https://docs.openmicroscopy.org/latest/omero5.5/sysadmins/server-upgrade.html - permanently to https://docs.openmicroscopy.org/omero/5.5.1/sysadmins/server-upgrade.html
07:14:04 ( index: line 35) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/
07:14:04 (developers/Server/LightAdmins: line 204) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/ome/services/blitz/repo/RepositoryDaoImpl.html
07:14:04 (developers/Server/GraphsImpl: line 70) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/cmd/graphs/BaseGraphPolicyAdjuster.html
07:14:04 ( sysadmins/index: line 15) redirect https://docs.openmicroscopy.org/latest/ome-model/specifications/ - with Found to https://ome-model.readthedocs.io/en/stable/specifications/
07:14:04 (developers/Server/GraphsImpl: line 48) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/cmd/graphs/BaseGraphTraversalProcessor.html
07:14:04 (developers/json-api: line 858) redirect https://docs.openmicroscopy.org/latest/ome-model/developers/screen-plate-well.html - with Found to https://ome-model.readthedocs.io/en/stable/developers/screen-plate-well.html
07:14:04 (developers/Server/GraphsImpl: line 77) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/cmd/graphs/ChildOptionsPolicy.html
07:14:04 (developers/Server/GraphsImpl: line 100) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/cmd/graphs/GraphRequestFactory.html
07:14:04 (developers/Server/GraphsImpl: line 100) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/cmd/graphs/GraphUtil.html
07:14:04 (developers/Server/GraphsImpl: line 48) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/cmd/graphs/NullGraphTraversalProcessor.html
07:14:04 (developers/Server/GraphsImpl: line 83) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/cmd/graphs/SkipHeadPolicy.html
07:14:04 (developers/Server/GraphsImpl: line 100) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/cmd/graphs/GraphHelper.html
07:14:04 (developers/Server/GraphsImpl: line 86) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/cmd/graphs/SkipTailPolicy.html
07:14:04 (developers/Model/Units: line 16) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/model/ElectricPotentialI.html
07:14:04 (developers/Model/Units: line 18) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/model/LengthI.html
07:14:04 (developers/Model/Units: line 17) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/model/FrequencyI.html
07:14:04 (sysadmins/config: line 1664) redirect https://docs.openmicroscopy.org/latest/omero/sysadmins/customization.html#download-restrictions - with Found to https://omero.readthedocs.io/en/stable/sysadmins/customization.html#download-restrictions
07:14:04 (developers/Model/Units: line 19) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/model/PowerI.html
07:14:04 (developers/Model/Units: line 20) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/model/PressureI.html
07:14:04 (developers/Model/Units: line 22) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/model/TimeI.html
07:14:04 (developers/Model/Units: line 21) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/javadoc/omero/model/TemperatureI.html
07:14:04 ( index: line 35) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/
07:14:04 (developers/Modules/Api: line 126) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api.html
07:14:04 (developers/Modules/Api: line 45) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IAdmin.html
07:14:04 (developers/Modules/Api: line 50) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IConfig.html
07:14:04 (developers/Modules/Api: line 57) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/ILdap.html
07:14:04 (developers/Modules/Api: line 54) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IContainer.html
07:14:04 (developers/Modules/Api: line 61) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IMetadata.html
07:14:04 (developers/Modules/Api: line 64) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IPixels.html
07:14:04 (developers/Modules/Api: line 67) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IProjection.html
07:14:04 (developers/GettingStarted/AdvancedClientDevelopment: line 477) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IQuery.html#projection
07:14:04 (developers/Modules/Api: line 70) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IQuery.html
07:14:04 (developers/Modules/Api: line 74) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IRenderingSettings.html
07:14:04 (developers/Modules/Api: line 77) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IRepositoryInfo.html
07:14:04 (developers/Modules/Api: line 80) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IRoi.html
07:14:04 (developers/Modules/Api: line 83) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IScript.html
07:14:04 (developers/Modules/Api: line 86) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/ISession.html
07:14:04 (developers/Modules/Api: line 89) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IShare.html
07:14:04 (developers/Modules/Api: line 91) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/ITimeline.html
07:14:04 (developers/Modules/Api: line 94) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/ITypes.html
07:14:04 (developers/Modules/Api: line 111) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/RawFileStore.html
07:14:04 (developers/Modules/Api: line 114) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/RawPixelsStore.html
07:14:04 (developers/Modules/Api: line 97) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/IUpdate.html
07:14:04 (developers/Modules/Api: line 117) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/RenderingEngine.html
07:14:04 (developers/Modules/Api: line 16) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/ServiceFactory.html
07:14:04 (developers/Modules/Api: line 121) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/ThumbnailStore.html
07:14:04 (developers/PythonBlitzGateway: line 111) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/ServiceFactory.html#getQueryService
07:14:04 (developers/PythonBlitzGateway: line 111) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/api/ServiceFactory.html#createRenderingEngine
07:14:04 (developers/Server/GraphRequests: line 75) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/Chgrp2.html
07:14:04 (developers/Server/GraphRequests: line 83) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/Chmod2.html
07:14:04 (developers/Server/GraphRequests: line 79) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/Chown2.html
07:14:04 (developers/Server/GraphRequests: line 88) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/Delete2.html
07:14:04 (developers/Server/GraphRequests: line 27) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/DiskUsage2.html
07:14:04 (developers/Server/GraphRequests: line 96) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/Duplicate.html
07:14:05 (developers/Server/GraphRequests: line 42) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/FindChildren.html
07:14:05 (developers/Server/GraphRequests: line 34) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/FindParents.html
07:14:05 (developers/Server/GraphRequests: line 18) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/LegalGraphTargets.html
07:14:05 (developers/Server/GraphRequests: line 59) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/GraphModify2.html
07:14:05 (developers/Server/GraphRequests: line 6) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/GraphQuery.html
07:14:05 (developers/Server/GraphRequests: line 104) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/SkipHead.html
07:14:05 (developers/Tables: line 341) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/grid/Table.html
07:14:05 (developers/Server/LightAdmins: line 22) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/AdminPrivilege.html
07:14:05 (developers/Server/GraphRequests: line 71) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/cmd/graphs/ChildOption.html
07:14:05 (developers/GettingStarted: line 136) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model.html
07:14:05 (developers/GettingStarted: line 161) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Annotation.html
07:14:05 (developers/GettingStarted: line 179) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Channel.html
07:14:05 (developers/GettingStarted: line 161) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/CommentAnnotation.html
07:14:05 (developers/GettingStarted: line 150) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Dataset.html
07:14:05 (developers/GettingStarted: line 161) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/DatasetAnnotationLink.html
07:14:05 (developers/GettingStarted: line 150) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/DatasetImageLink.html
07:14:05 (developers/GettingStarted: line 161) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/FileAnnotation.html
07:14:05 (developers/GettingStarted: line 150) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Image.html
07:14:05 (developers/Server/Permissions: line 381) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Permissions.html#canChgrp
07:14:05 (developers/Server/Permissions: line 380) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Permissions.html#canAnnotate
07:14:05 (developers/Server/Permissions: line 383) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Permissions.html#canDelete
07:14:05 (developers/Server/Permissions: line 382) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Permissions.html#canChown
07:14:05 (developers/Server/Permissions: line 384) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Permissions.html#canEdit
07:14:05 (developers/Server/Permissions: line 385) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Permissions.html#canLink
07:14:05 (developers/GettingStarted: line 161) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/ProjectAnnotationLink.html
07:14:05 (developers/GettingStarted: line 150) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Project.html
07:14:05 (developers/GettingStarted: line 179) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/Pixels.html
07:14:05 (developers/GettingStarted: line 150) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/model/ProjectDatasetLink.html
07:14:05 ( developers/Java: line 44) ok https://docs.openmicroscopy.org/omero-gateway/5.9.1/javadoc/omero/gateway/Gateway.html
07:14:05 ( developers/Java: line 52) ok https://docs.openmicroscopy.org/omero-gateway/5.9.1/javadoc//omero/gateway/facility/package-summary.html
07:14:05 ( developers/Java: line 52) ok https://docs.openmicroscopy.org/omero-gateway/5.9.1/javadoc/omero/gateway/facility/BrowseFacility.html
07:14:05 ( developers/Java: line 57) ok https://docs.openmicroscopy.org/omero-gateway/5.9.1/javadoc/omero/gateway/model/DataObject.html
07:14:05 (developers/Server/LightAdmins: line 160) ok https://docs.openmicroscopy.org/omero-blitz/5.7.3/slice2html/omero/sys/EventContext.html
07:14:05 (developers/Model/EveryObject: line 24) ok https://docs.openmicroscopy.org/omero-model/5.6.14/javadoc/ome/model/IEnum.html
07:14:05 (developers/Model/EveryObject: line 92) ok https://docs.openmicroscopy.org/omero-model/5.6.14/javadoc/ome/model/ILink.html
07:14:05 (developers/Model/EveryObject: line 54) ok https://docs.openmicroscopy.org/omero-model/5.6.14/javadoc/ome/model/IMutable.html
07:14:05 (developers/Model/EveryObject: line 425) ok https://docs.openmicroscopy.org/omero-model/5.6.14/javadoc/ome/model/units/ElectricPotential.html
07:14:05 (developers/Model/EveryObject: line 467) ok https://docs.openmicroscopy.org/omero-model/5.6.14/javadoc/ome/model/units/Frequency.html
07:14:05 (developers/Model/EveryObject: line 580) ok https://docs.openmicroscopy.org/omero-model/5.6.14/javadoc/ome/model/units/Length.html
07:14:05 (developers/Model/EveryObject: line 114) ok https://docs.openmicroscopy.org/omero-model/5.6.14/javadoc/ome/model/units/Power.html
07:14:05 (developers/Model/EveryObject: line 1190) ok https://docs.openmicroscopy.org/omero-model/5.6.14/javadoc/ome/model/units/Temperature.html
07:14:05 (developers/Model/EveryObject: line 2238) ok https://docs.openmicroscopy.org/omero-model/5.6.14/javadoc/ome/model/units/Time.html
07:14:05 (developers/Model/EveryObject: line 1190) ok https://docs.openmicroscopy.org/omero-model/5.6.14/javadoc/ome/model/units/Pressure.html
07:14:05 (developers/Server/LightAdmins: line 219) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/logic/AdminImpl.html
07:14:05 (developers/Server/LightAdmins: line 102) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/security/basic/LightAdminPrivilegesSecurityFilter.html
07:14:05 (developers/Server/LightAdmins: line 219) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/security/basic/OmeroInterceptor.html
07:14:05 (developers/Server/LightAdmins: line 219) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/security/basic/BasicACLVoter.html
07:14:05 (developers/Server/LightAdmins: line 242) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/security/basic/LightAdminPrivilegesCleanup.html
07:14:05 (developers/Server/GraphsImpl: line 11) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/GraphPathBean.html
07:14:05 (developers/Server/GraphsImpl: line 11) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/GraphPathReport.html
07:14:05 (developers/Server/GraphsImpl: line 60) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/GraphPolicyRule.html
07:14:05 (developers/Server/GraphsImpl: line 88) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/GraphPolicyRulePredicate.html
07:14:05 (developers/Server/GraphsImpl: line 60) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/GraphPolicy.html
07:14:05 (developers/Server/GraphsImpl: line 32) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/GraphTraversal.PlanExecutor.html
07:14:05 (developers/Server/GraphsImpl: line 32) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/GraphTraversal.Processor.html
07:14:05 (developers/Server/GraphsImpl: line 22) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/GraphTraversal.html
07:14:05 (developers/Server/GraphsImpl: line 42) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/ModelObjectSequencer.html
07:14:05 (developers/Server/GraphsImpl: line 88) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/PermissionsPredicate.html
07:14:05 (developers/Server/GraphsImpl: line 88) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/graphs/GroupPredicate.html
07:14:05 (developers/Server/LightAdmins: line 236) ok https://docs.openmicroscopy.org/omero-server/5.6.11/javadoc/ome/services/util/DBUserCheck.html
07:14:05 ( users/history: line 1024) ok https://docs.openmicroscopy.org/omero/5.3.0/developers/whatsnew.html
07:14:05 (sysadmins/whatsnew: line 16) redirect https://docs.openmicroscopy.org/omero/5.5/sysadmins/whatsnew.html - permanently to https://docs.openmicroscopy.org/omero/5.5.1/sysadmins/whatsnew.html
07:14:05 (users/cli/import-target: line 157) ok https://docs.oracle.com/javase/7/docs/api/java/util/regex/Pattern.html
07:14:05 (developers/Modules/Api: line 223) ok https://docs.oracle.com/javase/tutorial/java/annotations/basics.html
07:14:06 (sysadmins/config: line 811) ok https://docs.oracle.com/javase/jndi/tutorial/ldap/connect/create.html
07:14:06 (sysadmins/server-ldap: line 318) ok https://docs.oracle.com/javase/jndi/tutorial/ldap/referral/jndi.html
07:14:06 (sysadmins/config: line 924) ok https://docs.oracle.com/javase/tutorial/jndi/newstuff/readtimeout.html
07:14:06 (developers/testing: line 342) ok https://docs.pytest.org/en/latest/how-to/usage.html
07:14:06 (developers/testing: line 45) ok https://docs.pytest.org/en/latest/
07:14:06 (sysadmins/config: line 2205) redirect https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples - with Found to https://omero.readthedocs.io/en/stable/sysadmins/grid.html#deployment-examples
07:14:06 (sysadmins/config: line 1011) ok https://docs.python.org/3/library/logging.html#levels
07:14:06 (sysadmins/version-requirements: line 248) ok https://download.postgresql.org/pub/repos/yum/12/redhat/rhel-9-x86_64/
07:14:06 (sysadmins/python3-migration: line 84) ok https://downloads.openmicroscopy.org
07:14:06 (sysadmins/UpgradeCheck: line 29) redirect https://downloads.openmicroscopy.org/latest/omero - permanently to https://downloads.openmicroscopy.org/omero/5.6.13/
07:14:06 (sysadmins/dropbox: line 152) ok https://docs.python.org/2.7/library/site.html
07:14:06 (sysadmins/unix/server-install-homebrew: line 204) redirect https://downloads.openmicroscopy.org/latest/omero/artifacts/ - permanently to https://downloads.openmicroscopy.org/omero/5.6.13/artifacts/
07:14:06 (developers/GettingStarted: line 56) redirect https://downloads.openmicroscopy.org/latest/omero5.5/ - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/
07:14:06 (developers/analysis: line 12) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/ - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/api/
07:14:06 ( index: line 35) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/ - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/
07:14:06 (developers/PythonBlitzGateway: line 91) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/omero/omero.gateway.html - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/omero/omero.gateway.html
07:14:07 (developers/PythonBlitzGateway: line 171) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/omero/omero.gateway.html#omero.gateway.ImageWrapper - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/omero/omero.gateway.html#omero.gateway.ImageWrapper
07:14:07 (sysadmins/version-requirements: line 195) ok https://download.rockylinux.org/pub/rocky/9/BaseOS/x86_64/os/Packages/
07:14:07 (developers/PythonBlitzGateway: line 19) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/omero/omero.gateway.html#omero.gateway._BlitzGateway - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/omero/omero.gateway.html#omero.gateway._BlitzGateway
07:14:07 (developers/Server/Aop: line 77) redirect https://docs.spring.io/spring/docs/2.0.x/reference/aop.html - permanently to https://docs.spring.io/spring-framework/docs/2.0.x/reference/aop.html
07:14:07 (developers/GettingStarted/AdvancedClientDevelopment: line 477) ok https://downloads.openmicroscopy.org/presentations/2017/Team-Training/Hibernate/
07:14:07 (developers/Web/WebGateway: line 15) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/omeroweb/omeroweb.webgateway.html#module-omeroweb.webgateway.urls - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/omeroweb/omeroweb.webgateway.html#module-omeroweb.webgateway.urls
07:14:07 (developers/PythonBlitzGateway: line 123) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/omero/omero.gateway.html#omero.gateway._BlitzGateway._createProxies - permanently to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/omero/omero.gateway.html#omero.gateway._BlitzGateway._createProxies
07:14:07 (developers/Server/HowToCreateAService: line 101) redirect https://docs.spring.io/spring/docs/2.0.x/reference/beans.html#beans-factory-scopes-singleton - permanently to https://docs.spring.io/spring-framework/docs/2.0.x/reference/beans.html#beans-factory-scopes-singleton
07:14:07 (sysadmins/server-ldap: line 322) ok https://en.wikipedia.org/wiki/Active_Directory
07:14:07 (developers/Server/Aop: line 86) ok https://en.wikipedia.org/wiki/Aspect-oriented_programming
07:14:07 (developers/GettingStarted/AdvancedClientDevelopment: line 78) ok https://en.wikipedia.org/wiki/Interface_description_language
07:14:07 (sysadmins/in-place-import: line 288) ok https://en.wikipedia.org/wiki/Hard_link
07:14:07 (developers/GettingStarted/AdvancedClientDevelopment: line 56) ok https://en.wikipedia.org/wiki/Fallacies_of_Distributed_Computing
07:14:07 (sysadmins/server-ldap: line 4) ok https://en.wikipedia.org/wiki/Lightweight_Directory_Access_Protocol
07:14:07 (developers/Model/Units: line 185) ok https://en.wikipedia.org/wiki/International_System_of_Units
07:14:07 (sysadmins/server-backup-and-restore: line 216) ok https://en.wikipedia.org/wiki/List_of_backup_software
07:14:07 (sysadmins/config: line 2835) ok https://en.wikipedia.org/wiki/List_of_tz_database_time_zones
07:14:07 (sysadmins/server-syslog: line 4) ok https://en.wikipedia.org/wiki/Syslog
07:14:07 (developers/Model/Units: line 184) ok https://en.wikipedia.org/wiki/System_of_measurement
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07:14:07 (developers/index: line 28) redirect https://drive.google.com/file/d/1ld6s678JWRF15qUT4_3LyTE4IGYh-wRZ/ - with Found to https://drive.google.com/file/d/1ld6s678JWRF15qUT4_3LyTE4IGYh-wRZ/edit
07:14:08 (sysadmins/version-requirements: line 99) ok https://endoflife.date/rhel
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07:14:08 (sysadmins/version-requirements: line 119) ok https://endoflife.date/rocky-linux
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07:14:08 (sysadmins/python3-migration: line 62) redirect https://forum.image.sc/c/data - permanently to https://forum.image.sc/c/data-management/29
07:14:08 (sysadmins/limitations: line 49) ok https://forum.image.sc/t/pixeldata-threads-and-pyramid-generation-issues/49794
07:14:08 (sysadmins/system-migration: line 33) ok https://galaxy.ansible.com/ui/standalone/roles/ome/omero_server/
07:14:08 (sysadmins/python3-migration: line 52) ok https://galaxy.ansible.com/ome
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07:14:08 (sysadmins/system-migration: line 39) ok https://forum.image.sc/tag/omero
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07:14:09 (sysadmins/limitations: line 61) ok https://github.com/AllenCellModeling/aicsimageio
07:14:09 (sysadmins/unix/server-install-homebrew: line 27) ok https://github.com/Homebrew/brew/blob/master/docs/Installation.md
07:14:09 (sysadmins/limitations: line 61) ok https://github.com/BIOP/ijp-kheops
07:14:09 ( developers/Web: line 73) ok https://github.com/German-BioImaging/omero-autotag
07:14:09 ( developers/Web: line 73) ok https://github.com/German-BioImaging/omero-tagsearch
07:14:09 (developers/Tables: line 18) ok https://github.com/PyTables/PyTables/releases/tag/v3.9.1
07:14:09 (developers/Python: line 60) ok https://github.com/TheJacksonLaboratory/ezomero
07:14:10 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 173) ok https://github.com/adamchainz/django-cors-headers
07:14:10 (developers/scripts/index: line 53) ok https://github.com/aherbert/omero-user-scripts
07:14:10 (developers/scripts/index: line 57) ok https://github.com/dsudar/OMEROscripts
07:14:10 (developers/scripts/index: line 55) ok https://github.com/QBI-Microscopy/omero-user-scripts
07:14:10 (sysadmins/server-upgrade: line 75) redirect https://github.com/glencoesoftware/omero-ms-image-region/tree/v0.5.1/src/dist/MemoFileRegenerationReadMe.md - permanently to https://github.com/glencoesoftware/omero-ms-image-region/blob/v0.5.1/src/dist/MemoFileRegenerationReadMe.md
07:14:10 (developers/scripts/index: line 47) ok https://github.com/glencoesoftware/omero-user-scripts
07:14:10 (sysadmins/version-requirements: line 387) ok https://github.com/glencoesoftware/zeroc-ice-rhel9-x86_64
07:14:10 (developers/Python: line 21) redirect https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl - with Found to https://objects.githubusercontent.com/github-production-release-asset-2e65be/543662060/9ce94eef-3ec3-4651-a4ac-af4ecb7b5d87?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=releaseassetproduction%2F20241018%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20241018T071410Z&X-Amz-Expires=300&X-Amz-Signature=89b2b70d9001895f6a98c81125ef391c6e79030470fb4b36744d7f7d6345660f&X-Amz-SignedHeaders=host&response-content-disposition=attachment%3B%20filename%3Dzeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl&response-content-type=application%2Foctet-stream
07:14:11 (sysadmins/version-requirements: line 388) ok https://github.com/glencoesoftware/zeroc-ice-ubuntu2204-x86_64
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07:14:11 (developers/scripts/index: line 49) ok https://github.com/openmicroscopy/omero-example-scripts
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07:14:11 (sysadmins/unix/server-install-homebrew: line 382) redirect https://github.com/mxcl/homebrew/wiki/Bug-Fixing-Checklist - with Found to https://github.com/Homebrew/legacy-homebrew
07:14:11 (developers/build-system: line 12) ok https://gradle.org/
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07:14:12 (sysadmins/server-setup-examples: line 125) ok https://idr.openmicroscopy.org/about/deployment
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07:14:12 (sysadmins/python3-migration: line 59) ok https://hub.docker.com/u/openmicroscopy
07:14:12 (developers/logging: line 4) ok https://logback.qos.ch/
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07:14:12 (sysadmins/server-setup-examples: line 125) ok https://idr.openmicroscopy.org
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07:14:12 (developers/Modules/Search: line 267) ok https://lucene.apache.org/core/3_6_0/queryparsersyntax.html
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07:14:13 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 208) ok https://nginx.org/en/docs/http/configuring_https_servers.html
07:14:13 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 324) ok https://nginx.org/en/docs/http/ngx_http_proxy_module.html#proxy_buffering
07:14:13 (sysadmins/server-performance: line 201) ok https://metrics.dropwizard.io/
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07:14:14 (sysadmins/restricted-admins: line 191) ok https://omero-guides.readthedocs.io/en/latest/upload/docs/import-desktop-client.html#import-for-another-user
07:14:14 (sysadmins/public: line 156) redirect https://omero.lifesci.dundee.ac.uk - with Found to https://omero.lifesci.dundee.ac.uk/webclient/login/?url=%2Fwebclient%2F
07:14:14 (sysadmins/restricted-admins: line 138) ok https://omero-guides.readthedocs.io/en/latest/iviewer/docs/index.html
07:14:14 (sysadmins/cli/light-admins: line 4) ok https://omero-guides.readthedocs.io/en/latest/introduction/docs/group-user-management.html
07:14:14 (sysadmins/public: line 198) redirect https://omero.lifesci.dundee.ac.uk/webclient/?show=project-27917 - with Found to https://omero.lifesci.dundee.ac.uk/webclient/login/?url=%2Fwebclient%2F%3Fshow%3Dproject-27917
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07:14:14 (sysadmins/public: line 128) redirect https://omero.lifesci.dundee.ac.uk/pub/schleicher-et-al-2017 - with Found to https://omero.lifesci.dundee.ac.uk/webclient/login/?url=%2Fwebclient%2F%3Fshow%3Dproject-27936
07:14:14 (sysadmins/public: line 214) redirect https://omero.lifesci.dundee.ac.uk/webclient/?show=tag-364188 - with Found to https://omero.lifesci.dundee.ac.uk/webclient/login/?url=%2Fwebclient%2F%3Fshow%3Dtag-364188
07:14:14 (sysadmins/public: line 221) redirect https://omero.lifesci.dundee.ac.uk/webclient/?show=project-27936 - with Found to https://omero.lifesci.dundee.ac.uk/webclient/login/?url=%2Fwebclient%2F%3Fshow%3Dproject-27936
07:14:14 (developers/index: line 131) ok https://omero-insight.readthedocs.io/en/latest/
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07:14:15 (developers/Search/FileParsers: line 24) ok https://pdfbox.apache.org
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07:14:15 (sysadmins/version-requirements: line 298) ok https://peps.python.org/pep-0569/
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07:14:15 (developers/Python: line 7) ok https://pypi.org
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07:14:15 (sysadmins/limitations: line 61) ok https://pypi.org/project/tifffile/
07:14:15 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 344) ok https://pypi.org/project/futures
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07:14:15 (sysadmins/server-upgrade: line 335) ok https://pypi.org/project/omero-certificates/
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07:14:15 (sysadmins/limitations: line 61) ok https://qupath.github.io/
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07:14:16 (sysadmins/omeroweb-upgrade: line 124) ok https://redis.io/
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07:14:16 (sysadmins/version-requirements: line 454) ok https://trac.nginx.org/nginx/roadmap
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07:14:18 ( developers/Web: line 9) ok https://www.djangoproject.com/
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07:14:21 (sysadmins/troubleshooting: line 284) ok https://www.openmicroscopy.org/community/viewtopic.php?f=6&t=7722&p=15264&hilit=CheckedPath#p15264
07:14:21 ( users/index: line 59) ok https://www.openmicroscopy.org/explore/
07:14:21 (users/clients-overview: line 28) ok https://www.openmicroscopy.org/omero/analyze
07:14:21 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 77) ok https://www.openmicroscopy.org/omero/apps/
07:14:21 (developers/Matlab: line 12) ok https://www.openmicroscopy.org/omero/downloads/
07:14:21 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 77) ok https://www.openmicroscopy.org/omero/figure/
07:14:21 (sysadmins/public: line 97) ok https://www.openmicroscopy.org/omero/iviewer/
07:14:21 ( users/index: line 54) ok https://www.openmicroscopy.org/omero/new
07:14:21 ( users/index: line 54) ok https://www.openmicroscopy.org/omero/scientists
07:14:21 (sysadmins/server-security: line 21) ok https://www.openmicroscopy.org/security/
07:14:21 ( index: line 28) ok https://www.openmicroscopy.org/security/advisories/
07:14:21 ( users/history: line 1758) ok https://www.openmicroscopy.org/security/advisories/2012-SV1-ldap-authentication
07:14:21 ( users/history: line 1590) ok https://www.openmicroscopy.org/security/advisories/2014-SV1-unicode-passwords
07:14:21 ( users/history: line 1591) ok https://www.openmicroscopy.org/security/advisories/2014-SV2-empty-passwords
07:14:21 ( users/history: line 1551) ok https://www.openmicroscopy.org/security/advisories/2014-SV3-csrf
07:14:21 ( users/history: line 1552) ok https://www.openmicroscopy.org/security/advisories/2014-SV4-poodle
07:14:21 ( users/history: line 1096) ok https://www.openmicroscopy.org/security/advisories/2016-SV1-cleanse
07:14:21 ( users/history: line 1081) ok https://www.openmicroscopy.org/security/advisories/2016-SV2-share
07:14:21 ( users/history: line 1034) ok https://www.openmicroscopy.org/security/advisories/2017-SV1-filename
07:14:21 (sysadmins/server-backup-and-restore: line 162) redirect https://www.nongnu.org/rdiff-backup/docs.html - with Found to https://rdiff-backup.net/
07:14:21 ( users/history: line 1038) ok https://www.openmicroscopy.org/security/advisories/2017-SV2-edit-rw
07:14:21 ( users/history: line 1041) ok https://www.openmicroscopy.org/security/advisories/2017-SV3-delete-script
07:14:21 ( users/history: line 860) ok https://www.openmicroscopy.org/security/advisories/2017-SV4-guest-user
07:14:21 (sysadmins/server-upgrade: line 135) ok https://www.openmicroscopy.org/security/advisories/2017-SV5-filename-2
07:14:21 (developers/Modules/Api: line 28) ok https://www.openmicroscopy.org/support/
07:14:21 ( users/history: line 645) ok https://www.openmicroscopy.org/security/advisories/2017-SV6-job-file-link
07:14:21 (developers/Server/ExtendingOmero: line 6) redirect https://www.openmicroscopy.org/forums - permanently to https://forum.image.sc/c/data-management/29
07:14:22 (developers/Server/ExtendingOmero: line 329) redirect https://www.nginx.com/resources/wiki/ - permanently to https://docs.nginx.com
07:14:22 (sysadmins/in-place-import: line 292) ok https://www.openwall.com/lists/kernel-hardening/2012/02/21/20
07:14:22 (sysadmins/version-requirements: line 395) ok https://www.oracle.com/technetwork/java/eol-135779.html
07:14:22 (sysadmins/version-requirements: line 446) redirect https://www.oracle.com/technetwork/java/javase/downloads/index-jsp-138363.html - permanently to https://www.oracle.com/java/technologies/downloads/?er=221886
07:14:23 (developers/Server: line 32) redirect https://www.oracle.com/technetwork/java/javaee/ejb/index.html - permanently to https://www.oracle.com/java/technologies/enterprise-javabeans-technology.html
07:14:23 (sysadmins/unix/server-installation: line 124) redirect https://www.oracle.com/technetwork/java/javase/downloads/index.html - permanently to https://www.oracle.com/java/technologies/downloads/?er=221886
07:14:23 (sysadmins/server-backup-and-restore: line 112) ok https://www.postgresql.org/docs/10/backup.html
07:14:23 (developers/GettingStarted: line 126) ok https://www.pgadmin.org/
07:14:23 (sysadmins/unix/server-postgresql: line 143) redirect https://www.postgresql.org/docs/current/interactive/runtime-config-connection.html - permanently to https://www.postgresql.org/docs/current/runtime-config-connection.html
07:14:23 (sysadmins/version-requirements: line 264) ok https://www.postgresql.org/download/
07:14:23 ( users/cli/index: line 4) ok https://www.python.org
07:14:23 (sysadmins/unix/server-postgresql: line 145) redirect https://www.postgresql.org/docs/current/interactive/client-authentication.html - permanently to https://www.postgresql.org/docs/current/client-authentication.html
07:14:23 (sysadmins/unix/server-postgresql: line 12) ok https://www.postgresql.org/support/versioning/
07:14:24 (sysadmins/version-requirements: line 288) redirect https://www.python.org/dev/peps/pep-0494/ - with Found to https://peps.python.org/pep-0494/
07:14:24 (sysadmins/version-requirements: line 293) redirect https://www.python.org/dev/peps/pep-0537/ - with Found to https://peps.python.org/pep-0537/
07:14:24 (sysadmins/unix/server-postgresql: line 140) redirect https://www.postgresql.org/docs/current/interactive/index.html - permanently to https://www.postgresql.org/docs/current/index.html
07:14:24 (sysadmins/config: line 1446) ok https://www.quartz-scheduler.org/api/1.8.6/org/quartz/CronExpression.html
07:14:24 (developers/logging: line 4) ok https://www.slf4j.org
07:14:24 (developers/Web/CSRF: line 14) ok https://www.rfc-editor.org/rfc/rfc2616.html#section-9.1.1
07:14:24 (sysadmins/config: line 2395) ok https://www.w3.org/TR/referrer-policy/#referrer-policies
07:14:24 (sysadmins/omeromovie: line 36) redirect https://www.scipy.org/install.html - permanently to https://scipy.org/install/
07:14:25 (sysadmins/server-syslog: line 52) ok https://www.splunk.com/
07:14:25 (developers/Web/LinkingFromWebclient: line 86) ok https://www.ncbi.nlm.nih.gov/protein/000397
07:14:25 (developers/GettingStarted/AdvancedClientDevelopment: line 19) ok https://www.scons.org
07:14:25 (sysadmins/version-requirements: line 257) redirect https://yum.postgresql.org/15/redhat/rhel-9-x86_64/ - permanently to https://download.postgresql.org/pub/repos/yum/15/redhat/rhel-9-x86_64/
07:14:25 ( developers/Cpp: line 4) ok https://zeroc.com
07:14:25 (sysadmins/version-requirements: line 260) redirect https://yum.postgresql.org/16/redhat/rhel-9-x86_64/ - permanently to https://download.postgresql.org/pub/repos/yum/16/redhat/rhel-9-x86_64/
07:14:25 (sysadmins/version-requirements: line 254) redirect https://yum.postgresql.org/14/redhat/rhel-9-x86_64/ - permanently to https://download.postgresql.org/pub/repos/yum/14/redhat/rhel-9-x86_64/
07:14:26 (developers/Python: line 7) ok https://zeroc.com/ice/downloads/3.6
07:14:26 (sysadmins/unix/server-installation: line 190) redirect https://zeroc.com/downloads/ice - temporarily to https://zeroc.com/ice/downloads/3.7
07:14:26 ( developers/Web: line 29) redirect https://zeroc.com/products/ice - permanently to https://zeroc.com/ice
07:15:00 (developers/Web/Webclient: line 60) ok https://docs.djangoproject.com/en/1.11/topics/http/sessions/
07:15:00 (developers/Web/CSRF: line 49) ok https://docs.djangoproject.com/en/1.11/topics/http/decorators/
07:15:01 (sysadmins/config: line 2755) ok https://docs.djangoproject.com/en/1.11/topics/http/sessions/#browser-length-vs-persistent-sessions
07:15:01 (developers/testing: line 564) ok https://docs.djangoproject.com/en/1.11/topics/testing/tools
07:15:01 Adding redirects:
07:15:01 build succeeded.
07:15:01
07:15:01 Look for any errors in the above output or in _build/linkcheck/output.txt
07:15:01
07:15:01 Link check complete; look for any errors in the above output or in _build/linkcheck/output.txt.
07:15:01 Archiving artifacts
07:15:02 Finished: SUCCESS
![[Jenkins]](/jenkins/static/a3382f31/images/svgs/logo.svg){kind=logo}
