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Started by upstream project "Trigger" build number 85 originally caused by: Started by timer [Pipeline] Start of Pipeline [Pipeline] node Running on testintegration in /home/omero/workspace/OMERO-plugins-push [Pipeline] { [Pipeline] library Loading library recursiveMerge@master Attempting to resolve master from remote references... > git --version # timeout=10 > git --version # 'git version 2.39.2' > git ls-remote -- https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Found match: refs/heads/master revision f061dff15033c5cd55249a383f52c15ca4a0e5cf The recommended git tool is: NONE No credentials specified > git rev-parse --resolve-git-dir /var/jenkins_home/jobs/OMERO-plugins-push/workspace@libs/3527f795de077758b82663f7b48798100750860c75e4099522d51863b08dc748/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Fetching without tags Fetching upstream changes from https://github.com/ome/jenkins-library-recursivemerge.git > git --version # timeout=10 > git --version # 'git version 2.39.2' > git fetch --no-tags --force --progress -- https://github.com/ome/jenkins-library-recursivemerge.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Checking out Revision f061dff15033c5cd55249a383f52c15ca4a0e5cf (master) > git config core.sparsecheckout # timeout=10 > git checkout -f f061dff15033c5cd55249a383f52c15ca4a0e5cf # timeout=10 Commit message: "Merge pull request #17 from jburel/python3" > git rev-list --no-walk f061dff15033c5cd55249a383f52c15ca4a0e5cf # timeout=10 [Pipeline] checkout The recommended git tool is: NONE No credentials specified Fetching changes from the remote Git repository Checking out Revision 17debd0389692e2455795d3c9d15b57151d5d590 (refs/remotes/origin/master) > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-plugins-push/.git # timeout=10 > git config remote.origin.url https://github.com/ome/omero-plugins.git # timeout=10 Fetching upstream changes from https://github.com/ome/omero-plugins.git > git --version # timeout=10 > git --version # 'git version 2.39.3' > git fetch --tags --force --progress -- https://github.com/ome/omero-plugins.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 17debd0389692e2455795d3c9d15b57151d5d590 # timeout=10 Commit message: "Merge pull request #372 from ome/dependabot/submodules/omero-test-infra-7688c54" > git rev-list --no-walk ae210a1f23553a3e1b0ccee05865e7617a3f9905 # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -fdx # timeout=10 > git submodule foreach --recursive git reset --hard # timeout=10 > git submodule foreach --recursive git clean -fdx # timeout=10 > git remote # timeout=10 > git submodule init # timeout=10 > git submodule sync # timeout=10 > git config --get remote.origin.url # timeout=10 > git submodule init # timeout=10 > git config -f .gitmodules --get-regexp ^submodule\.(.+)\.url # timeout=10 > git config --get submodule.omero-figure.url # timeout=10 > git config -f .gitmodules --get submodule.omero-figure.path # timeout=10 > git config --get submodule.minimal-omero-client.url # timeout=10 > git config -f .gitmodules --get submodule.minimal-omero-client.path # timeout=10 > git config --get submodule.scripts.url # timeout=10 > git config -f .gitmodules --get submodule.scripts.path # timeout=10 > git config --get submodule.omero-test-infra.url # timeout=10 > git config -f .gitmodules --get submodule.omero-test-infra.path # timeout=10 > git config --get submodule.omero-prometheus-tools.url # timeout=10 > git config -f .gitmodules --get submodule.omero-prometheus-tools.path # timeout=10 > git config --get submodule.omero-parade.url # timeout=10 > git config -f .gitmodules --get submodule.omero-parade.path # timeout=10 > git config --get submodule.omero-mapr.url # timeout=10 > git config -f .gitmodules --get submodule.omero-mapr.path # timeout=10 > git config --get submodule.omero-fpbioimage.url # timeout=10 > git config -f .gitmodules --get submodule.omero-fpbioimage.path # timeout=10 > git config --get submodule.omero-iviewer.url # timeout=10 > git config -f .gitmodules --get submodule.omero-iviewer.path # timeout=10 > git config --get submodule.omero-gallery.url # timeout=10 > git config -f .gitmodules --get submodule.omero-gallery.path # timeout=10 > git config --get submodule.rOMERO-gateway.url # timeout=10 > git config -f .gitmodules --get submodule.rOMERO-gateway.path # timeout=10 > git config --get submodule.omero-weberror.url # timeout=10 > git config -f .gitmodules --get submodule.omero-weberror.path # timeout=10 > git config --get submodule.omero-cli-render.url # timeout=10 > git config -f .gitmodules --get submodule.omero-cli-render.path # timeout=10 > git config --get submodule.omero-cli-duplicate.url # timeout=10 > git config -f .gitmodules --get submodule.omero-cli-duplicate.path # timeout=10 > git config --get submodule.omero-metadata.url # timeout=10 > git config -f .gitmodules --get submodule.omero-metadata.path # timeout=10 > git config --get submodule.omero-webtest.url # timeout=10 > git config -f .gitmodules --get submodule.omero-webtest.path # timeout=10 > git config --get submodule.omero-upload.url # timeout=10 > git config -f .gitmodules --get submodule.omero-upload.path # timeout=10 > git config --get submodule.omero-virtual-microscope.url # timeout=10 > git config -f .gitmodules --get submodule.omero-virtual-microscope.path # timeout=10 > git config --get submodule.omero-rois.url # timeout=10 > git config -f .gitmodules --get submodule.omero-rois.path # timeout=10 > git config --get submodule.omero-signup.url # timeout=10 > git config -f .gitmodules --get submodule.omero-signup.path # timeout=10 > git config --get submodule.omero-web-zarr.url # timeout=10 > git config -f .gitmodules --get submodule.omero-web-zarr.path # timeout=10 > git config --get submodule.omero-cli-zarr.url # timeout=10 > git config -f .gitmodules --get submodule.omero-cli-zarr.path # timeout=10 > git submodule update --init --recursive omero-figure # timeout=10 > git submodule update --init --recursive minimal-omero-client # timeout=10 > git submodule update --init --recursive scripts # timeout=10 > git submodule update --init --recursive omero-test-infra # timeout=10 > git submodule update --init --recursive omero-prometheus-tools # timeout=10 > git submodule update --init --recursive omero-parade # timeout=10 > git submodule update --init --recursive omero-mapr # timeout=10 > git submodule update --init --recursive omero-fpbioimage # timeout=10 > git submodule update --init --recursive omero-iviewer # timeout=10 > git submodule update --init --recursive omero-gallery # timeout=10 [Pipeline] pwd [Pipeline] copyArtifacts Copied 1 artifact from "OMERO-build-push" build number 77 [Pipeline] sh > git submodule update --init --recursive rOMERO-gateway # timeout=10 > git submodule update --init --recursive omero-weberror # timeout=10 > git submodule update --init --recursive omero-cli-render # timeout=10 > git submodule update --init --recursive omero-cli-duplicate # timeout=10 > git submodule update --init --recursive omero-metadata # timeout=10 > git submodule update --init --recursive omero-webtest # timeout=10 > git submodule update --init --recursive omero-upload # timeout=10 > git submodule update --init --recursive omero-virtual-microscope # timeout=10 > git submodule update --init --recursive omero-rois # timeout=10 > git submodule update --init --recursive omero-signup # timeout=10 > git submodule update --init --recursive omero-web-zarr # timeout=10 > git submodule update --init --recursive omero-cli-zarr # timeout=10 + pushd build ~/workspace/OMERO-plugins-push/build ~/workspace/OMERO-plugins-push + curl -sfL https://github.com/ome/build-infra/archive/master.tar.gz + tar -zxf - + popd ~/workspace/OMERO-plugins-push + python3 -m venv build/venv + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ '[' -n /bin/bash -o -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-plugins-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-plugins-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ '[' -n /bin/bash -o -n '' ']' ++ hash -r + python3 -m pip install -U pip Requirement already satisfied: pip in ./build/venv/lib/python3.9/site-packages (21.2.3) Collecting pip Using cached pip-24.0-py3-none-any.whl (2.1 MB) Installing collected packages: pip Attempting uninstall: pip Found existing installation: pip 21.2.3 Uninstalling pip-21.2.3: Successfully uninstalled pip-21.2.3 Successfully installed pip-24.0 + python3 -m pip install scc Collecting scc Using cached scc-0.19.1-py3-none-any.whl.metadata (3.6 kB) Collecting PyGithub>=1.54 (from scc) Using cached PyGithub-2.3.0-py3-none-any.whl.metadata (3.8 kB) Collecting PyYAML>=5.1 (from scc) Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) Collecting future (from scc) Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) Collecting ruamel.yaml (from scc) Using cached ruamel.yaml-0.18.6-py3-none-any.whl.metadata (23 kB) Collecting ruamel.yaml.jinja2 (from scc) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB) Collecting six (from scc) Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB) Collecting urllib3<2 (from scc) Using cached urllib3-1.26.18-py2.py3-none-any.whl.metadata (48 kB) Collecting yaclifw<0.3,>=0.2.0 (from scc) Using cached yaclifw-0.2.0-py3-none-any.whl Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc) Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl.metadata (8.6 kB) Collecting requests>=2.14.0 (from PyGithub>=1.54->scc) Using cached requests-2.32.2-py3-none-any.whl.metadata (4.6 kB) Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached PyJWT-2.8.0-py3-none-any.whl.metadata (4.2 kB) Collecting typing-extensions>=4.0.0 (from PyGithub>=1.54->scc) Using cached typing_extensions-4.12.0-py3-none-any.whl.metadata (3.0 kB) Collecting Deprecated (from PyGithub>=1.54->scc) Using cached Deprecated-1.2.14-py2.py3-none-any.whl.metadata (5.4 kB) Collecting ruamel.yaml.clib>=0.2.7 (from ruamel.yaml->scc) Using cached ruamel.yaml.clib-0.2.8-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl.metadata (2.2 kB) Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cryptography-42.0.7-cp39-abi3-manylinux_2_28_x86_64.whl.metadata (5.3 kB) Collecting cffi>=1.4.1 (from pynacl>=1.4.0->PyGithub>=1.54->scc) Using cached cffi-1.16.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (1.5 kB) Collecting charset-normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB) Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached idna-3.7-py3-none-any.whl.metadata (9.9 kB) Collecting certifi>=2017.4.17 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached certifi-2024.2.2-py3-none-any.whl.metadata (2.2 kB) Collecting wrapt<2,>=1.10 (from Deprecated->PyGithub>=1.54->scc) Using cached wrapt-1.16.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB) Collecting pycparser (from cffi>=1.4.1->pynacl>=1.4.0->PyGithub>=1.54->scc) Using cached pycparser-2.22-py3-none-any.whl.metadata (943 bytes) Using cached scc-0.19.1-py3-none-any.whl (48 kB) Using cached PyGithub-2.3.0-py3-none-any.whl (354 kB) Using cached PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB) Using cached urllib3-1.26.18-py2.py3-none-any.whl (143 kB) Using cached future-1.0.0-py3-none-any.whl (491 kB) Using cached ruamel.yaml-0.18.6-py3-none-any.whl (117 kB) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB) Using cached six-1.16.0-py2.py3-none-any.whl (11 kB) Using cached PyJWT-2.8.0-py3-none-any.whl (22 kB) Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (856 kB) Using cached requests-2.32.2-py3-none-any.whl (63 kB) Using cached ruamel.yaml.clib-0.2.8-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl (562 kB) Using cached typing_extensions-4.12.0-py3-none-any.whl (37 kB) Using cached Deprecated-1.2.14-py2.py3-none-any.whl (9.6 kB) Using cached certifi-2024.2.2-py3-none-any.whl (163 kB) Using cached cffi-1.16.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (443 kB) Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB) Using cached cryptography-42.0.7-cp39-abi3-manylinux_2_28_x86_64.whl (3.8 MB) Using cached idna-3.7-py3-none-any.whl (66 kB) Using cached wrapt-1.16.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (80 kB) Using cached pycparser-2.22-py3-none-any.whl (117 kB) Installing collected packages: wrapt, urllib3, typing-extensions, six, ruamel.yaml.clib, PyYAML, pyjwt, pycparser, idna, future, charset-normalizer, certifi, yaclifw, ruamel.yaml, requests, Deprecated, cffi, ruamel.yaml.jinja2, pynacl, cryptography, PyGithub, scc Successfully installed Deprecated-1.2.14 PyGithub-2.3.0 PyYAML-6.0.1 certifi-2024.2.2 cffi-1.16.0 charset-normalizer-3.3.2 cryptography-42.0.7 future-1.0.0 idna-3.7 pycparser-2.22 pyjwt-2.8.0 pynacl-1.5.0 requests-2.32.2 ruamel.yaml-0.18.6 ruamel.yaml.clib-0.2.8 ruamel.yaml.jinja2-0.2.7 scc-0.19.1 six-1.16.0 typing-extensions-4.12.0 urllib3-1.26.18 wrapt-1.16.0 yaclifw-0.2.0 [Pipeline] sh + export BASE_REPO=omero-plugins.git + BASE_REPO=omero-plugins.git + export BASE_BRANCH=master + BASE_BRANCH=master + export VERSION_LOG=/home/omero/workspace/OMERO-plugins-push/build/version.tsv + VERSION_LOG=/home/omero/workspace/OMERO-plugins-push/build/version.tsv + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ '[' -n /bin/bash -o -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-plugins-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-plugins-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ '[' -n /bin/bash -o -n '' ']' ++ hash -r + '[' merge_ci '!=' null ']' + export PUSH_BRANCH=merge_ci + PUSH_BRANCH=merge_ci + '[' null '!=' null ']' + export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment' + STATUS=success-only + MERGE_OPTIONS='-vvv --no-ask --reset --comment' + bash build/build-infra-master/recursive-merge Merge base repository (no submodule updates) 2024-05-28 00:39:43,521 [ scc.config] DEBUG Found github.token 2024-05-28 00:39:43,524 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2024-05-28 00:39:43,727 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:39:44,158 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:39:44,557 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2024-05-28 00:39:44,558 [ scc.gh] DEBUG 4447 remaining from 5000 (Reset at 01:05 2024-05-28 00:39:44,560 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-05-28 00:39:44,567 [ scc.git] DEBUG Check current status 2024-05-28 00:39:44,568 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-05-28 00:39:44,574 [ scc.git] DEBUG 17debd0 Merge pull request #372 from ome/dependabot/submodules/omero-test-infra-7688c54 2024-05-28 00:39:44,574 [ scc.git] DEBUG Calling 'git submodule status' 2024-05-28 00:39:44,626 [ scc.git] DEBUG 4628e82a32d8af458d9fa621303b24a0a860378f minimal-omero-client (remotes/origin/HEAD) 2024-05-28 00:39:44,629 [ scc.git] DEBUG 027b3e695d5b225955918c53ef8c81e0d5bc6bf4 omero-cli-duplicate (v0.4.0-12-g027b3e6) 2024-05-28 00:39:44,632 [ scc.git] DEBUG 53e3f420999e2cc5992711f49baa3779cf2c4d3a omero-cli-render (v0.8.0-9-g53e3f42) 2024-05-28 00:39:44,635 [ scc.git] DEBUG 2ca566b8cd1b2f3787ce5c8017ef8d4d4ac39473 omero-cli-zarr (v0.5.5-5-g2ca566b) 2024-05-28 00:39:44,642 [ scc.git] DEBUG 3d9e3b87a8ef9c67e904aa985f1937b0713558b9 omero-figure (v6.2.2-170-g3d9e3b87) 2024-05-28 00:39:44,645 [ scc.git] DEBUG e5b3ca3a5aba41c950d2427b1a05ee0ced55670e omero-fpbioimage (v0.4.1-1-ge5b3ca3) 2024-05-28 00:39:44,648 [ scc.git] DEBUG 56f443528edd3b7127635933cb573b528b57acda omero-gallery (v3.4.3-1-g56f4435) 2024-05-28 00:39:44,652 [ scc.git] DEBUG 7b7a637c795fea1582f47a6cdec499f77cfcde1e omero-iviewer (v0.14.0-1-g7b7a637) 2024-05-28 00:39:44,655 [ scc.git] DEBUG 9631b155c44fcec9986b03315dd9f5c5c64aa7eb omero-mapr (v0.5.2-7-g9631b15) 2024-05-28 00:39:44,658 [ scc.git] DEBUG e2fc5ec5aeb38953ac2a12cb7c980aeee5bf306c omero-metadata (v0.12.0-15-ge2fc5ec) 2024-05-28 00:39:44,661 [ scc.git] DEBUG 5d441c250912a98d8a87771f78dde8b54c8e12d6 omero-parade (v0.2.4-1-g5d441c2) 2024-05-28 00:39:44,664 [ scc.git] DEBUG 18bccb69f16cfeee98628ff2ae14ab829b87a23c omero-prometheus-tools (v0.2.3-4-g18bccb6) 2024-05-28 00:39:44,668 [ scc.git] DEBUG 5c752d5c25fee07c1835036d6a90bd97faeb0720 omero-rois (v0.2.0-63-g5c752d5) 2024-05-28 00:39:44,672 [ scc.git] DEBUG c8610dba25f39870a09fa5401c735fb3be85a319 omero-signup (v0.3.3-1-gc8610db) 2024-05-28 00:39:44,677 [ scc.git] DEBUG 7688c540375cf05252c31f216e0248b69a2659c2 omero-test-infra (v0.6.3-57-g7688c54) 2024-05-28 00:39:44,679 [ scc.git] DEBUG aca9e9cad82a08e2e3d37d71cb374b37c90e4693 omero-upload (v0.4.0-8-gaca9e9c) 2024-05-28 00:39:44,682 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2024-05-28 00:39:44,684 [ scc.git] DEBUG 67bb245b8b08709e04a8bf52b02de2298a029a94 omero-web-zarr (v0.1.1-1-g67bb245) 2024-05-28 00:39:44,687 [ scc.git] DEBUG adfa132f23a1b12ca2d2ec53ebba54c760fe2d07 omero-weberror (v0.4.1-1-gadfa132) 2024-05-28 00:39:44,690 [ scc.git] DEBUG 8da48e116184f1ebb28aa9629748afdfb0282ae5 omero-webtest (v0.4.2-1-g8da48e1) 2024-05-28 00:39:44,693 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2024-05-28 00:39:44,696 [ scc.git] DEBUG 5a908933161233015332dd416c325c60c5b8bd3a scripts (v5.8.2-1-g5a90893) 2024-05-28 00:39:44,701 [ scc.config] DEBUG Found remote.origin.url 2024-05-28 00:39:45,028 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins HTTP/1.1" 200 None 2024-05-28 00:39:45,488 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-05-28 00:39:45,894 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-05-28 00:39:46,309 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-05-28 00:39:46,723 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-05-28 00:39:46,724 [ scc.git] DEBUG Resetting... 2024-05-28 00:39:46,725 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2024-05-28 00:39:46,733 [ scc.git] DEBUG HEAD is now at 17debd0 Merge pull request #372 from ome/dependabot/submodules/omero-test-infra-7688c54 2024-05-28 00:39:46,734 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2024-05-28 00:39:46,835 [ scc.git] DEBUG Check current status 2024-05-28 00:39:46,835 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-05-28 00:39:46,839 [ scc.git] DEBUG 17debd0 Merge pull request #372 from ome/dependabot/submodules/omero-test-infra-7688c54 2024-05-28 00:39:46,839 [ scc.git] DEBUG Calling 'git submodule status' 2024-05-28 00:39:46,886 [ scc.git] DEBUG 4628e82a32d8af458d9fa621303b24a0a860378f minimal-omero-client (remotes/origin/HEAD) 2024-05-28 00:39:46,889 [ scc.git] DEBUG 027b3e695d5b225955918c53ef8c81e0d5bc6bf4 omero-cli-duplicate (v0.4.0-12-g027b3e6) 2024-05-28 00:39:46,892 [ scc.git] DEBUG 53e3f420999e2cc5992711f49baa3779cf2c4d3a omero-cli-render (v0.8.0-9-g53e3f42) 2024-05-28 00:39:46,895 [ scc.git] DEBUG 2ca566b8cd1b2f3787ce5c8017ef8d4d4ac39473 omero-cli-zarr (v0.5.5-5-g2ca566b) 2024-05-28 00:39:46,902 [ scc.git] DEBUG 3d9e3b87a8ef9c67e904aa985f1937b0713558b9 omero-figure (v6.2.2-170-g3d9e3b87) 2024-05-28 00:39:46,905 [ scc.git] DEBUG e5b3ca3a5aba41c950d2427b1a05ee0ced55670e omero-fpbioimage (v0.4.1-1-ge5b3ca3) 2024-05-28 00:39:46,908 [ scc.git] DEBUG 56f443528edd3b7127635933cb573b528b57acda omero-gallery (v3.4.3-1-g56f4435) 2024-05-28 00:39:46,912 [ scc.git] DEBUG 7b7a637c795fea1582f47a6cdec499f77cfcde1e omero-iviewer (v0.14.0-1-g7b7a637) 2024-05-28 00:39:46,915 [ scc.git] DEBUG 9631b155c44fcec9986b03315dd9f5c5c64aa7eb omero-mapr (v0.5.2-7-g9631b15) 2024-05-28 00:39:46,918 [ scc.git] DEBUG e2fc5ec5aeb38953ac2a12cb7c980aeee5bf306c omero-metadata (v0.12.0-15-ge2fc5ec) 2024-05-28 00:39:46,920 [ scc.git] DEBUG 5d441c250912a98d8a87771f78dde8b54c8e12d6 omero-parade (v0.2.4-1-g5d441c2) 2024-05-28 00:39:46,923 [ scc.git] DEBUG 18bccb69f16cfeee98628ff2ae14ab829b87a23c omero-prometheus-tools (v0.2.3-4-g18bccb6) 2024-05-28 00:39:46,927 [ scc.git] DEBUG 5c752d5c25fee07c1835036d6a90bd97faeb0720 omero-rois (v0.2.0-63-g5c752d5) 2024-05-28 00:39:46,929 [ scc.git] DEBUG c8610dba25f39870a09fa5401c735fb3be85a319 omero-signup (v0.3.3-1-gc8610db) 2024-05-28 00:39:46,933 [ scc.git] DEBUG 7688c540375cf05252c31f216e0248b69a2659c2 omero-test-infra (v0.6.3-57-g7688c54) 2024-05-28 00:39:46,935 [ scc.git] DEBUG aca9e9cad82a08e2e3d37d71cb374b37c90e4693 omero-upload (v0.4.0-8-gaca9e9c) 2024-05-28 00:39:46,938 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2024-05-28 00:39:46,940 [ scc.git] DEBUG 67bb245b8b08709e04a8bf52b02de2298a029a94 omero-web-zarr (v0.1.1-1-g67bb245) 2024-05-28 00:39:46,943 [ scc.git] DEBUG adfa132f23a1b12ca2d2ec53ebba54c760fe2d07 omero-weberror (v0.4.1-1-gadfa132) 2024-05-28 00:39:46,945 [ scc.git] DEBUG 8da48e116184f1ebb28aa9629748afdfb0282ae5 omero-webtest (v0.4.2-1-g8da48e1) 2024-05-28 00:39:46,948 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2024-05-28 00:39:46,952 [ scc.git] DEBUG 5a908933161233015332dd416c325c60c5b8bd3a scripts (v5.8.2-1-g5a90893) 2024-05-28 00:39:46,953 [ scc.merge] INFO Merging Pull Request(s) based on master 2024-05-28 00:39:46,953 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2024-05-28 00:39:46,953 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2024-05-28 00:39:46,953 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2024-05-28 00:39:46,953 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2024-05-28 00:39:46,953 [ scc.repo] DEBUG ## PRs found: 2024-05-28 00:39:47,161 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/pulls HTTP/1.1" 200 2 2024-05-28 00:39:47,162 [ scc.repo] DEBUG ## Branches found: 2024-05-28 00:39:47,163 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:39:47,163 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:39:47,170 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-05-28 00:39:47,175 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-05-28 00:39:47,175 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-05-28 00:39:47,180 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-05-28 00:39:47,186 [ scc.git] DEBUG Already up to date. 2024-05-28 00:39:47,186 [ scc.git] DEBUG ## Unique users: [] 2024-05-28 00:39:47,186 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:39:47,186 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:39:47,190 [ scc.git] DEBUG Calling 'git submodule update' 2024-05-28 00:39:47,243 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:39:47,243 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:39:47,248 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-05-28 00:39:47,483 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fc018bc42e0> has no local changes 2024-05-28 00:39:47,483 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone Repository: ome/omero-plugins Already up to date. Generated by OMERO-plugins-push#79 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/)' 2024-05-28 00:39:47,563 [ scc.git] DEBUG [detached HEAD f953594] merge master -Dorg -Snone 2024-05-28 00:39:47,563 [ scc.merge] INFO Repository: ome/omero-plugins 2024-05-28 00:39:47,564 [ scc.merge] INFO Already up to date. 2024-05-28 00:39:47,564 [ scc.merge] INFO 2024-05-28 00:39:47,564 [ scc.merge] INFO 2024-05-28 00:39:47,564 [ scc.merge] DEBUG Cleaning remote branches created for merging 2024-05-28 00:39:47,564 [ scc.git] DEBUG Calling 'git remote' Synchronizing submodule url for 'minimal-omero-client' Synchronizing submodule url for 'omero-cli-duplicate' Synchronizing submodule url for 'omero-cli-render' Synchronizing submodule url for 'omero-cli-zarr' Synchronizing submodule url for 'omero-figure' Synchronizing submodule url for 'omero-fpbioimage' Synchronizing submodule url for 'omero-gallery' Synchronizing submodule url for 'omero-iviewer' Synchronizing submodule url for 'omero-mapr' Synchronizing submodule url for 'omero-metadata' Synchronizing submodule url for 'omero-parade' Synchronizing submodule url for 'omero-prometheus-tools' Synchronizing submodule url for 'omero-rois' Synchronizing submodule url for 'omero-signup' Synchronizing submodule url for 'omero-test-infra' Synchronizing submodule url for 'omero-upload' Synchronizing submodule url for 'omero-virtual-microscope' Synchronizing submodule url for 'omero-web-zarr' Synchronizing submodule url for 'omero-weberror' Synchronizing submodule url for 'omero-webtest' Synchronizing submodule url for 'rOMERO-gateway' Synchronizing submodule url for 'scripts' Merge all submodules using repository configuration: base-branch: master submodules: scripts: base-branch: develop omero-web-zarr: base-branch: main 2024-05-28 00:39:56,663 [ scc.config] DEBUG Found github.token 2024-05-28 00:39:56,666 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2024-05-28 00:39:56,849 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:39:57,262 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:39:57,663 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2024-05-28 00:39:57,664 [ scc.gh] DEBUG 4439 remaining from 5000 (Reset at 01:05 2024-05-28 00:39:57,665 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-05-28 00:39:57,670 [ scc.git] DEBUG Check current status 2024-05-28 00:39:57,671 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-05-28 00:39:57,675 [ scc.git] DEBUG f953594 merge master -Dorg -Snone 2024-05-28 00:39:57,675 [ scc.git] DEBUG Calling 'git submodule status' 2024-05-28 00:39:57,720 [ scc.git] DEBUG 4628e82a32d8af458d9fa621303b24a0a860378f minimal-omero-client (remotes/origin/HEAD) 2024-05-28 00:39:57,722 [ scc.git] DEBUG 027b3e695d5b225955918c53ef8c81e0d5bc6bf4 omero-cli-duplicate (v0.4.0-12-g027b3e6) 2024-05-28 00:39:57,725 [ scc.git] DEBUG 53e3f420999e2cc5992711f49baa3779cf2c4d3a omero-cli-render (v0.8.0-9-g53e3f42) 2024-05-28 00:39:57,728 [ scc.git] DEBUG 2ca566b8cd1b2f3787ce5c8017ef8d4d4ac39473 omero-cli-zarr (v0.5.5-5-g2ca566b) 2024-05-28 00:39:57,735 [ scc.git] DEBUG 3d9e3b87a8ef9c67e904aa985f1937b0713558b9 omero-figure (v6.2.2-170-g3d9e3b87) 2024-05-28 00:39:57,738 [ scc.git] DEBUG e5b3ca3a5aba41c950d2427b1a05ee0ced55670e omero-fpbioimage (v0.4.1-1-ge5b3ca3) 2024-05-28 00:39:57,741 [ scc.git] DEBUG 56f443528edd3b7127635933cb573b528b57acda omero-gallery (v3.4.3-1-g56f4435) 2024-05-28 00:39:57,745 [ scc.git] DEBUG 7b7a637c795fea1582f47a6cdec499f77cfcde1e omero-iviewer (v0.14.0-1-g7b7a637) 2024-05-28 00:39:57,748 [ scc.git] DEBUG 9631b155c44fcec9986b03315dd9f5c5c64aa7eb omero-mapr (v0.5.2-7-g9631b15) 2024-05-28 00:39:57,751 [ scc.git] DEBUG e2fc5ec5aeb38953ac2a12cb7c980aeee5bf306c omero-metadata (v0.12.0-15-ge2fc5ec) 2024-05-28 00:39:57,753 [ scc.git] DEBUG 5d441c250912a98d8a87771f78dde8b54c8e12d6 omero-parade (v0.2.4-1-g5d441c2) 2024-05-28 00:39:57,756 [ scc.git] DEBUG 18bccb69f16cfeee98628ff2ae14ab829b87a23c omero-prometheus-tools (v0.2.3-4-g18bccb6) 2024-05-28 00:39:57,759 [ scc.git] DEBUG 5c752d5c25fee07c1835036d6a90bd97faeb0720 omero-rois (v0.2.0-63-g5c752d5) 2024-05-28 00:39:57,761 [ scc.git] DEBUG c8610dba25f39870a09fa5401c735fb3be85a319 omero-signup (v0.3.3-1-gc8610db) 2024-05-28 00:39:57,764 [ scc.git] DEBUG 7688c540375cf05252c31f216e0248b69a2659c2 omero-test-infra (v0.6.3-57-g7688c54) 2024-05-28 00:39:57,767 [ scc.git] DEBUG aca9e9cad82a08e2e3d37d71cb374b37c90e4693 omero-upload (v0.4.0-8-gaca9e9c) 2024-05-28 00:39:57,769 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2024-05-28 00:39:57,771 [ scc.git] DEBUG 67bb245b8b08709e04a8bf52b02de2298a029a94 omero-web-zarr (v0.1.1-1-g67bb245) 2024-05-28 00:39:57,774 [ scc.git] DEBUG adfa132f23a1b12ca2d2ec53ebba54c760fe2d07 omero-weberror (v0.4.1-1-gadfa132) 2024-05-28 00:39:57,776 [ scc.git] DEBUG 8da48e116184f1ebb28aa9629748afdfb0282ae5 omero-webtest (v0.4.2-1-g8da48e1) 2024-05-28 00:39:57,779 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2024-05-28 00:39:57,782 [ scc.git] DEBUG 5a908933161233015332dd416c325c60c5b8bd3a scripts (v5.8.2-1-g5a90893) 2024-05-28 00:39:57,787 [ scc.config] DEBUG Found remote.origin.url 2024-05-28 00:39:57,787 [ scc.git] DEBUG Reading repository configuration from repositories.yml 2024-05-28 00:39:57,789 [ scc.git] DEBUG Repository configuration: base-branch: master submodules: omero-web-zarr: base-branch: main scripts: base-branch: develop 2024-05-28 00:39:58,151 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins HTTP/1.1" 200 None 2024-05-28 00:39:58,618 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-05-28 00:39:59,033 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-05-28 00:39:59,451 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-05-28 00:39:59,854 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-05-28 00:39:59,856 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-05-28 00:39:59,941 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client 2024-05-28 00:39:59,941 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-05-28 00:39:59,945 [ scc.git] DEBUG Check current status 2024-05-28 00:39:59,946 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-05-28 00:39:59,950 [ scc.git] DEBUG 4628e82 Merge pull request #65 from jburel/gateway_5_9_1 2024-05-28 00:39:59,950 [ scc.git] DEBUG Calling 'git submodule status' 2024-05-28 00:39:59,998 [ scc.config] DEBUG Found remote.origin.url 2024-05-28 00:40:00,343 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/minimal-omero-client HTTP/1.1" 200 None 2024-05-28 00:40:00,807 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-05-28 00:40:01,218 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-05-28 00:40:01,637 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-05-28 00:40:02,059 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-05-28 00:40:02,061 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-05-28 00:40:02,107 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:40:02,109 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate 2024-05-28 00:40:02,109 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-05-28 00:40:02,115 [ scc.git] DEBUG Check current status 2024-05-28 00:40:02,115 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-05-28 00:40:02,119 [ scc.git] DEBUG 027b3e6 Merge pull request #24 from sbesson/future_pytest 2024-05-28 00:40:02,119 [ scc.git] DEBUG Calling 'git submodule status' 2024-05-28 00:40:02,178 [ scc.config] DEBUG Found remote.origin.url 2024-05-28 00:40:02,565 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate HTTP/1.1" 200 None 2024-05-28 00:40:03,035 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-05-28 00:40:03,458 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-05-28 00:40:03,878 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-05-28 00:40:04,290 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-05-28 00:40:04,291 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-05-28 00:40:04,339 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:40:04,341 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render 2024-05-28 00:40:04,341 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-05-28 00:40:04,346 [ scc.git] DEBUG Check current status 2024-05-28 00:40:04,346 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-05-28 00:40:04,351 [ scc.git] DEBUG 53e3f42 Merge pull request #61 from sbesson/pytest 2024-05-28 00:40:04,352 [ scc.git] DEBUG Calling 'git submodule status' 2024-05-28 00:40:04,401 [ scc.config] DEBUG Found remote.origin.url 2024-05-28 00:40:04,776 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render HTTP/1.1" 200 None 2024-05-28 00:40:05,244 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-05-28 00:40:05,664 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-05-28 00:40:06,061 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-05-28 00:40:06,508 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-05-28 00:40:06,511 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-05-28 00:40:06,561 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:40:06,563 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr 2024-05-28 00:40:06,563 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-05-28 00:40:06,573 [ scc.git] DEBUG Check current status 2024-05-28 00:40:06,574 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-05-28 00:40:06,585 [ scc.git] DEBUG 2ca566b Merge pull request #160 from ome/pre-commit-ci-update-config 2024-05-28 00:40:06,586 [ scc.git] DEBUG Calling 'git submodule status' 2024-05-28 00:40:06,646 [ scc.config] DEBUG Found remote.origin.url 2024-05-28 00:40:07,009 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr HTTP/1.1" 200 None 2024-05-28 00:40:07,476 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-05-28 00:40:07,875 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-05-28 00:40:08,295 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-05-28 00:40:08,707 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-05-28 00:40:08,708 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-05-28 00:40:08,751 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:40:08,753 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure 2024-05-28 00:40:08,753 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-05-28 00:40:08,758 [ scc.git] DEBUG Check current status 2024-05-28 00:40:08,758 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-05-28 00:40:08,780 [ scc.git] DEBUG 3d9e3b87 Merge pull request #554 from jburel/update_publish 2024-05-28 00:40:08,781 [ scc.git] DEBUG Calling 'git submodule status' 2024-05-28 00:40:08,829 [ scc.config] DEBUG Found remote.origin.url 2024-05-28 00:40:09,209 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure HTTP/1.1" 200 None 2024-05-28 00:40:09,657 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-05-28 00:40:10,076 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-05-28 00:40:10,485 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-05-28 00:40:10,903 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-05-28 00:40:10,909 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-05-28 00:40:10,961 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:40:10,962 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage 2024-05-28 00:40:10,962 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-05-28 00:40:10,966 [ scc.git] DEBUG Check current status 2024-05-28 00:40:10,966 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-05-28 00:40:10,970 [ scc.git] DEBUG e5b3ca3 Bump version: 0.4.1 → 0.4.2.dev0 2024-05-28 00:40:10,970 [ scc.git] DEBUG Calling 'git submodule status' 2024-05-28 00:40:11,013 [ scc.config] DEBUG Found remote.origin.url 2024-05-28 00:40:11,398 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage HTTP/1.1" 200 None 2024-05-28 00:40:11,871 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-05-28 00:40:12,290 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-05-28 00:40:12,709 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-05-28 00:40:13,132 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-05-28 00:40:13,133 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-05-28 00:40:13,173 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:40:13,174 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery 2024-05-28 00:40:13,174 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-05-28 00:40:13,178 [ scc.git] DEBUG Check current status 2024-05-28 00:40:13,179 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-05-28 00:40:13,182 [ scc.git] DEBUG 56f4435 Bump version: 3.4.3 → 3.4.4.dev0 2024-05-28 00:40:13,183 [ scc.git] DEBUG Calling 'git submodule status' 2024-05-28 00:40:13,223 [ scc.config] DEBUG Found remote.origin.url 2024-05-28 00:40:13,623 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery HTTP/1.1" 200 None 2024-05-28 00:40:14,059 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-05-28 00:40:14,477 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-05-28 00:40:14,887 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-05-28 00:40:15,293 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-05-28 00:40:15,294 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-05-28 00:40:15,335 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:40:15,335 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer 2024-05-28 00:40:15,336 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-05-28 00:40:15,340 [ scc.git] DEBUG Check current status 2024-05-28 00:40:15,340 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-05-28 00:40:15,344 [ scc.git] DEBUG 7b7a637 add dev to version 2024-05-28 00:40:15,344 [ scc.git] DEBUG Calling 'git submodule status' 2024-05-28 00:40:15,386 [ scc.config] DEBUG Found remote.origin.url 2024-05-28 00:40:15,767 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer HTTP/1.1" 200 None 2024-05-28 00:40:16,232 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-05-28 00:40:16,670 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-05-28 00:40:17,132 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-05-28 00:40:17,535 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-05-28 00:40:17,537 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-05-28 00:40:17,578 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:40:17,579 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr 2024-05-28 00:40:17,579 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-05-28 00:40:17,584 [ scc.git] DEBUG Check current status 2024-05-28 00:40:17,584 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-05-28 00:40:17,588 [ scc.git] DEBUG 9631b15 Merge pull request #82 from JensWendt/master 2024-05-28 00:40:17,588 [ scc.git] DEBUG Calling 'git submodule status' 2024-05-28 00:40:17,631 [ scc.config] DEBUG Found remote.origin.url 2024-05-28 00:40:18,008 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr HTTP/1.1" 200 None 2024-05-28 00:40:18,448 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-05-28 00:40:18,860 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-05-28 00:40:19,270 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-05-28 00:40:19,681 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-05-28 00:40:19,682 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-05-28 00:40:19,723 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:40:19,724 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata 2024-05-28 00:40:19,724 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-05-28 00:40:19,728 [ scc.git] DEBUG Check current status 2024-05-28 00:40:19,728 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-05-28 00:40:19,732 [ scc.git] DEBUG e2fc5ec Merge pull request #85 from sbesson/pytest_logging 2024-05-28 00:40:19,733 [ scc.git] DEBUG Calling 'git submodule status' 2024-05-28 00:40:19,773 [ scc.config] DEBUG Found remote.origin.url 2024-05-28 00:40:20,167 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata HTTP/1.1" 200 None 2024-05-28 00:40:20,645 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-05-28 00:40:21,064 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-05-28 00:40:21,473 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-05-28 00:40:21,885 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-05-28 00:40:21,887 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-05-28 00:40:21,937 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:40:21,938 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade 2024-05-28 00:40:21,938 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-05-28 00:40:21,944 [ scc.git] DEBUG Check current status 2024-05-28 00:40:21,945 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-05-28 00:40:21,950 [ scc.git] DEBUG 5d441c2 Bump version: 0.2.4 → 0.2.5.dev0 2024-05-28 00:40:21,951 [ scc.git] DEBUG Calling 'git submodule status' 2024-05-28 00:40:22,003 [ scc.config] DEBUG Found remote.origin.url 2024-05-28 00:40:22,355 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade HTTP/1.1" 200 None 2024-05-28 00:40:22,793 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-05-28 00:40:23,214 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-05-28 00:40:23,625 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-05-28 00:40:24,032 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-05-28 00:40:24,033 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-05-28 00:40:24,072 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:40:24,073 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools 2024-05-28 00:40:24,073 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-05-28 00:40:24,078 [ scc.git] DEBUG Check current status 2024-05-28 00:40:24,078 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-05-28 00:40:24,082 [ scc.git] DEBUG 18bccb6 Update actions to v3 and v4 2024-05-28 00:40:24,083 [ scc.git] DEBUG Calling 'git submodule status' 2024-05-28 00:40:24,125 [ scc.config] DEBUG Found remote.origin.url 2024-05-28 00:40:24,497 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools HTTP/1.1" 200 None 2024-05-28 00:40:24,933 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-05-28 00:40:25,359 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-05-28 00:40:25,777 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-05-28 00:40:26,187 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-05-28 00:40:26,189 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-05-28 00:40:26,227 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:40:26,228 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois 2024-05-28 00:40:26,228 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-05-28 00:40:26,232 [ scc.git] DEBUG Check current status 2024-05-28 00:40:26,233 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-05-28 00:40:26,236 [ scc.git] DEBUG 5c752d5 Merge pull request #27 from ome/pre-commit-ci-update-config 2024-05-28 00:40:26,237 [ scc.git] DEBUG Calling 'git submodule status' 2024-05-28 00:40:26,280 [ scc.config] DEBUG Found remote.origin.url 2024-05-28 00:40:26,666 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois HTTP/1.1" 200 None 2024-05-28 00:40:27,107 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-05-28 00:40:27,521 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-05-28 00:40:27,941 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-05-28 00:40:28,350 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-05-28 00:40:28,352 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-05-28 00:40:28,393 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:40:28,394 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup 2024-05-28 00:40:28,394 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-05-28 00:40:28,399 [ scc.git] DEBUG Check current status 2024-05-28 00:40:28,399 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-05-28 00:40:28,403 [ scc.git] DEBUG c8610db Bump version: 0.3.3 → 0.3.4.dev0 2024-05-28 00:40:28,404 [ scc.git] DEBUG Calling 'git submodule status' 2024-05-28 00:40:28,445 [ scc.config] DEBUG Found remote.origin.url 2024-05-28 00:40:28,849 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup HTTP/1.1" 200 None 2024-05-28 00:40:29,291 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-05-28 00:40:29,705 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-05-28 00:40:30,121 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-05-28 00:40:30,545 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-05-28 00:40:30,546 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-05-28 00:40:30,589 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:40:30,590 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra 2024-05-28 00:40:30,590 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-05-28 00:40:30,595 [ scc.git] DEBUG Check current status 2024-05-28 00:40:30,595 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-05-28 00:40:30,600 [ scc.git] DEBUG 7688c54 Merge pull request #69 from jburel/use_build 2024-05-28 00:40:30,600 [ scc.git] DEBUG Calling 'git submodule status' 2024-05-28 00:40:30,640 [ scc.config] DEBUG Found remote.origin.url 2024-05-28 00:40:30,961 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-test-infra HTTP/1.1" 301 198 Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 2024-05-28 00:40:30,964 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 2024-05-28 00:40:31,214 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/111908919 HTTP/1.1" 200 None 2024-05-28 00:40:31,663 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-05-28 00:40:32,076 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-05-28 00:40:32,499 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-05-28 00:40:32,917 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-05-28 00:40:32,918 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-05-28 00:40:32,961 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:40:32,963 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload 2024-05-28 00:40:32,963 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-05-28 00:40:32,969 [ scc.git] DEBUG Check current status 2024-05-28 00:40:32,969 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-05-28 00:40:32,974 [ scc.git] DEBUG aca9e9c Merge pull request #12 from sbesson/pytest 2024-05-28 00:40:32,975 [ scc.git] DEBUG Calling 'git submodule status' 2024-05-28 00:40:33,021 [ scc.config] DEBUG Found remote.origin.url 2024-05-28 00:40:33,402 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload HTTP/1.1" 200 None 2024-05-28 00:40:33,853 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-05-28 00:40:34,269 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-05-28 00:40:34,686 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-05-28 00:40:35,107 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-05-28 00:40:35,108 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-05-28 00:40:35,151 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:40:35,152 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope 2024-05-28 00:40:35,152 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-05-28 00:40:35,156 [ scc.git] DEBUG Check current status 2024-05-28 00:40:35,157 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-05-28 00:40:35,161 [ scc.git] DEBUG deab817 update setup-python to v4 2024-05-28 00:40:35,161 [ scc.git] DEBUG Calling 'git submodule status' 2024-05-28 00:40:35,208 [ scc.config] DEBUG Found remote.origin.url 2024-05-28 00:40:35,569 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope HTTP/1.1" 200 None 2024-05-28 00:40:36,003 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-05-28 00:40:36,422 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-05-28 00:40:36,834 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-05-28 00:40:37,256 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-05-28 00:40:37,258 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-05-28 00:40:37,299 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:40:37,300 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr 2024-05-28 00:40:37,300 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-05-28 00:40:37,305 [ scc.git] DEBUG Check current status 2024-05-28 00:40:37,305 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-05-28 00:40:37,311 [ scc.git] DEBUG 67bb245 Bump version: 0.1.1 → 0.1.2.dev0 2024-05-28 00:40:37,312 [ scc.git] DEBUG Calling 'git submodule status' 2024-05-28 00:40:37,358 [ scc.config] DEBUG Found remote.origin.url 2024-05-28 00:40:37,359 [ scc.git] DEBUG Repository configuration: base-branch: main 2024-05-28 00:40:37,797 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr HTTP/1.1" 200 None 2024-05-28 00:40:38,239 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-05-28 00:40:38,668 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-05-28 00:40:39,086 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-05-28 00:40:39,504 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-05-28 00:40:39,506 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-05-28 00:40:39,546 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:40:39,547 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror 2024-05-28 00:40:39,547 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-05-28 00:40:39,551 [ scc.git] DEBUG Check current status 2024-05-28 00:40:39,551 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-05-28 00:40:39,556 [ scc.git] DEBUG adfa132 Bump version: 0.4.1 → 0.4.2.dev0 2024-05-28 00:40:39,556 [ scc.git] DEBUG Calling 'git submodule status' 2024-05-28 00:40:39,600 [ scc.config] DEBUG Found remote.origin.url 2024-05-28 00:40:39,931 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-weberror HTTP/1.1" 301 197 Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 2024-05-28 00:40:39,932 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 2024-05-28 00:40:40,146 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/38373425 HTTP/1.1" 200 None 2024-05-28 00:40:40,602 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-05-28 00:40:41,011 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-05-28 00:40:41,417 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-05-28 00:40:41,822 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-05-28 00:40:41,823 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-05-28 00:40:41,862 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:40:41,863 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest 2024-05-28 00:40:41,863 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-05-28 00:40:41,868 [ scc.git] DEBUG Check current status 2024-05-28 00:40:41,868 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-05-28 00:40:41,873 [ scc.git] DEBUG 8da48e1 Bump version: 0.4.2 → 0.4.3.dev0 2024-05-28 00:40:41,873 [ scc.git] DEBUG Calling 'git submodule status' 2024-05-28 00:40:41,915 [ scc.config] DEBUG Found remote.origin.url 2024-05-28 00:40:42,246 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-webtest HTTP/1.1" 301 197 Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 2024-05-28 00:40:42,248 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 2024-05-28 00:40:42,494 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/25970383 HTTP/1.1" 200 None 2024-05-28 00:40:42,940 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-05-28 00:40:43,350 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-05-28 00:40:43,758 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-05-28 00:40:44,172 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-05-28 00:40:44,174 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-05-28 00:40:44,216 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:40:44,217 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway 2024-05-28 00:40:44,217 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-05-28 00:40:44,222 [ scc.git] DEBUG Check current status 2024-05-28 00:40:44,222 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-05-28 00:40:44,226 [ scc.git] DEBUG 7b5d64d Merge pull request #106 from dominikl/add_examples_2 2024-05-28 00:40:44,226 [ scc.git] DEBUG Calling 'git submodule status' 2024-05-28 00:40:44,270 [ scc.config] DEBUG Found remote.origin.url 2024-05-28 00:40:44,639 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway HTTP/1.1" 200 None 2024-05-28 00:40:45,093 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-05-28 00:40:45,522 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-05-28 00:40:45,937 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-05-28 00:40:46,357 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-05-28 00:40:46,359 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-05-28 00:40:46,397 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:40:46,398 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts 2024-05-28 00:40:46,398 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2024-05-28 00:40:46,404 [ scc.git] DEBUG Check current status 2024-05-28 00:40:46,404 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-05-28 00:40:46,409 [ scc.git] DEBUG 5a90893 Bump version: 5.8.2 → 5.8.3.dev0 2024-05-28 00:40:46,410 [ scc.git] DEBUG Calling 'git submodule status' 2024-05-28 00:40:46,455 [ scc.config] DEBUG Found remote.origin.url 2024-05-28 00:40:46,456 [ scc.git] DEBUG Repository configuration: base-branch: develop 2024-05-28 00:40:46,777 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/scripts HTTP/1.1" 301 196 Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2024-05-28 00:40:46,778 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2024-05-28 00:40:47,019 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/4865545 HTTP/1.1" 200 None 2024-05-28 00:40:47,477 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2024-05-28 00:40:47,915 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2024-05-28 00:40:48,344 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2024-05-28 00:40:48,776 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2024-05-28 00:40:48,779 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-05-28 00:40:48,820 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:40:48,820 [ scc.git] DEBUG Resetting... 2024-05-28 00:40:48,820 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2024-05-28 00:40:48,832 [ scc.git] DEBUG HEAD is now at f953594 merge master -Dorg -Snone 2024-05-28 00:40:48,832 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2024-05-28 00:40:48,934 [ scc.git] DEBUG Check current status 2024-05-28 00:40:48,934 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2024-05-28 00:40:48,941 [ scc.git] DEBUG f953594 merge master -Dorg -Snone 2024-05-28 00:40:48,942 [ scc.git] DEBUG Calling 'git submodule status' 2024-05-28 00:40:48,991 [ scc.git] DEBUG 4628e82a32d8af458d9fa621303b24a0a860378f minimal-omero-client (remotes/origin/HEAD) 2024-05-28 00:40:48,994 [ scc.git] DEBUG 027b3e695d5b225955918c53ef8c81e0d5bc6bf4 omero-cli-duplicate (v0.4.0-12-g027b3e6) 2024-05-28 00:40:48,996 [ scc.git] DEBUG 53e3f420999e2cc5992711f49baa3779cf2c4d3a omero-cli-render (v0.8.0-9-g53e3f42) 2024-05-28 00:40:48,999 [ scc.git] DEBUG 2ca566b8cd1b2f3787ce5c8017ef8d4d4ac39473 omero-cli-zarr (v0.5.5-5-g2ca566b) 2024-05-28 00:40:49,006 [ scc.git] DEBUG 3d9e3b87a8ef9c67e904aa985f1937b0713558b9 omero-figure (v6.2.2-170-g3d9e3b87) 2024-05-28 00:40:49,008 [ scc.git] DEBUG e5b3ca3a5aba41c950d2427b1a05ee0ced55670e omero-fpbioimage (v0.4.1-1-ge5b3ca3) 2024-05-28 00:40:49,011 [ scc.git] DEBUG 56f443528edd3b7127635933cb573b528b57acda omero-gallery (v3.4.3-1-g56f4435) 2024-05-28 00:40:49,014 [ scc.git] DEBUG 7b7a637c795fea1582f47a6cdec499f77cfcde1e omero-iviewer (v0.14.0-1-g7b7a637) 2024-05-28 00:40:49,017 [ scc.git] DEBUG 9631b155c44fcec9986b03315dd9f5c5c64aa7eb omero-mapr (v0.5.2-7-g9631b15) 2024-05-28 00:40:49,019 [ scc.git] DEBUG e2fc5ec5aeb38953ac2a12cb7c980aeee5bf306c omero-metadata (v0.12.0-15-ge2fc5ec) 2024-05-28 00:40:49,022 [ scc.git] DEBUG 5d441c250912a98d8a87771f78dde8b54c8e12d6 omero-parade (v0.2.4-1-g5d441c2) 2024-05-28 00:40:49,024 [ scc.git] DEBUG 18bccb69f16cfeee98628ff2ae14ab829b87a23c omero-prometheus-tools (v0.2.3-4-g18bccb6) 2024-05-28 00:40:49,027 [ scc.git] DEBUG 5c752d5c25fee07c1835036d6a90bd97faeb0720 omero-rois (v0.2.0-63-g5c752d5) 2024-05-28 00:40:49,030 [ scc.git] DEBUG c8610dba25f39870a09fa5401c735fb3be85a319 omero-signup (v0.3.3-1-gc8610db) 2024-05-28 00:40:49,033 [ scc.git] DEBUG 7688c540375cf05252c31f216e0248b69a2659c2 omero-test-infra (v0.6.3-57-g7688c54) 2024-05-28 00:40:49,036 [ scc.git] DEBUG aca9e9cad82a08e2e3d37d71cb374b37c90e4693 omero-upload (v0.4.0-8-gaca9e9c) 2024-05-28 00:40:49,038 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2024-05-28 00:40:49,041 [ scc.git] DEBUG 67bb245b8b08709e04a8bf52b02de2298a029a94 omero-web-zarr (v0.1.1-1-g67bb245) 2024-05-28 00:40:49,043 [ scc.git] DEBUG adfa132f23a1b12ca2d2ec53ebba54c760fe2d07 omero-weberror (v0.4.1-1-gadfa132) 2024-05-28 00:40:49,046 [ scc.git] DEBUG 8da48e116184f1ebb28aa9629748afdfb0282ae5 omero-webtest (v0.4.2-1-g8da48e1) 2024-05-28 00:40:49,048 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2024-05-28 00:40:49,052 [ scc.git] DEBUG 5a908933161233015332dd416c325c60c5b8bd3a scripts (v5.8.2-1-g5a90893) 2024-05-28 00:40:49,053 [ scc.merge] INFO Merging Pull Request(s) based on master 2024-05-28 00:40:49,053 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2024-05-28 00:40:49,054 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2024-05-28 00:40:49,054 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2024-05-28 00:40:49,054 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2024-05-28 00:40:49,054 [ scc.merge] INFO Excluding Pull Request(s) without successful status 2024-05-28 00:40:49,054 [ scc.repo] DEBUG ## PRs found: 2024-05-28 00:40:49,249 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/pulls HTTP/1.1" 200 2 2024-05-28 00:40:49,249 [ scc.repo] DEBUG ## Branches found: 2024-05-28 00:40:49,250 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:40:49,250 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:40:49,256 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-05-28 00:40:49,260 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-05-28 00:40:49,261 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-05-28 00:40:49,266 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-05-28 00:40:49,270 [ scc.git] DEBUG Already up to date. 2024-05-28 00:40:49,271 [ scc.git] DEBUG ## Unique users: [] 2024-05-28 00:40:49,271 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:40:49,271 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:40:49,275 [ scc.git] DEBUG Calling 'git submodule update' 2024-05-28 00:40:49,324 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:40:49,324 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:40:49,329 [ scc.repo] DEBUG ## PRs found: 2024-05-28 00:40:49,675 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/minimal-omero-client/pulls HTTP/1.1" 200 2 2024-05-28 00:40:49,676 [ scc.repo] DEBUG ## Branches found: 2024-05-28 00:40:49,676 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client 2024-05-28 00:40:49,676 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:40:49,676 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:40:49,682 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-05-28 00:40:49,687 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-05-28 00:40:49,687 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-05-28 00:40:49,692 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-05-28 00:40:49,697 [ scc.git] DEBUG Already up to date. 2024-05-28 00:40:49,697 [ scc.git] DEBUG ## Unique users: [] 2024-05-28 00:40:49,697 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:40:49,697 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:40:49,702 [ scc.git] DEBUG Calling 'git submodule update' 2024-05-28 00:40:49,740 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:40:49,740 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:40:49,745 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-05-28 00:40:49,785 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-05-28 00:40:49,792 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f1225d93400> has no local changes 2024-05-28 00:40:49,792 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/minimal-omero-client Already up to date. Generated by OMERO-plugins-push#79 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/)' 2024-05-28 00:40:49,801 [ scc.git] DEBUG [detached HEAD 1d7dbad] merge master -Dorg -Ssuccess-only 2024-05-28 00:40:49,801 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:40:49,801 [ scc.repo] DEBUG ## PRs found: 2024-05-28 00:40:50,215 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/pulls HTTP/1.1" 200 None 2024-05-28 00:40:50,671 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/25 HTTP/1.1" 200 None 2024-05-28 00:40:51,133 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/25/comments HTTP/1.1" 200 None 2024-05-28 00:40:51,659 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ba066707734718b3c2f034d21873d2fcecd9cd48 HTTP/1.1" 200 None 2024-05-28 00:40:52,131 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ba066707734718b3c2f034d21873d2fcecd9cd48/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-05-28 00:40:52,600 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ba066707734718b3c2f034d21873d2fcecd9cd48/check-suites?app_id=15368 HTTP/1.1" 200 None 2024-05-28 00:40:53,162 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ba066707734718b3c2f034d21873d2fcecd9cd48 HTTP/1.1" 200 None 2024-05-28 00:40:53,609 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/statuses/ba066707734718b3c2f034d21873d2fcecd9cd48?per_page=1 HTTP/1.1" 200 2 2024-05-28 00:40:53,610 [ scc.repo] DEBUG - PR 25 jburel 'review message' 2024-05-28 00:40:54,068 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/18 HTTP/1.1" 200 None 2024-05-28 00:40:54,545 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/18/comments HTTP/1.1" 200 None 2024-05-28 00:40:54,547 [ scc.repo] DEBUG ## Branches found: 2024-05-28 00:40:54,547 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate 2024-05-28 00:40:54,547 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:40:54,547 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:40:54,554 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-05-28 00:40:54,560 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-05-28 00:40:54,560 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-05-28 00:40:54,566 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-05-28 00:40:54,572 [ scc.git] DEBUG Already up to date. 2024-05-28 00:40:54,573 [ scc.git] DEBUG Calling 'git fetch origin pull/25/head' 2024-05-28 00:40:54,959 [ scc.git] DEBUG From https://github.com/ome/omero-cli-duplicate 2024-05-28 00:40:54,959 [ scc.git] DEBUG * branch refs/pull/25/head -> FETCH_HEAD 2024-05-28 00:40:54,965 [ scc.git] DEBUG ## Unique users: [] 2024-05-28 00:40:54,965 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:40:54,965 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:40:54,971 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...ba066707734718b3c2f034d21873d2fcecd9cd48' 2024-05-28 00:40:54,976 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:40:54,983 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (review message) ba066707734718b3c2f034d21873d2fcecd9cd48' 2024-05-28 00:40:55,008 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-05-28 00:40:55,011 [ scc.git] DEBUG src/omero/plugins/duplicate.py | 7 +++---- 2024-05-28 00:40:55,011 [ scc.git] DEBUG 1 file changed, 3 insertions(+), 4 deletions(-) 2024-05-28 00:40:55,160 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:40:55,162 [ scc.git] DEBUG Calling 'git submodule update' 2024-05-28 00:40:55,202 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:40:55,203 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:40:55,208 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-05-28 00:40:55,248 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-05-28 00:40:55,255 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f1224ccb6a0> has no local changes 2024-05-28 00:40:55,256 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-cli-duplicate Excluded PRs: - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment) Already up to date. Merged PRs: - PR 25 jburel 'review message' Generated by OMERO-plugins-push#79 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/)' 2024-05-28 00:40:55,266 [ scc.git] DEBUG [detached HEAD d3b243a] merge master -Dorg -Ssuccess-only 2024-05-28 00:40:55,266 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:40:55,267 [ scc.repo] DEBUG ## PRs found: 2024-05-28 00:40:55,729 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls HTTP/1.1" 200 None 2024-05-28 00:40:56,191 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/62 HTTP/1.1" 200 None 2024-05-28 00:40:56,637 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/62/comments HTTP/1.1" 200 None 2024-05-28 00:40:57,098 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/59 HTTP/1.1" 200 None 2024-05-28 00:40:57,597 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/59/comments HTTP/1.1" 200 None 2024-05-28 00:40:58,094 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/b8fba620a2b882050c1858f3a7d8bee8c8efdede HTTP/1.1" 200 None 2024-05-28 00:40:58,565 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/b8fba620a2b882050c1858f3a7d8bee8c8efdede/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-05-28 00:40:59,068 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/b8fba620a2b882050c1858f3a7d8bee8c8efdede HTTP/1.1" 200 None 2024-05-28 00:40:59,472 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/statuses/b8fba620a2b882050c1858f3a7d8bee8c8efdede?per_page=1 HTTP/1.1" 200 2 2024-05-28 00:40:59,472 [ scc.repo] DEBUG - PR 59 will-moore 'Apply settings to Plate' 2024-05-28 00:40:59,930 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/54 HTTP/1.1" 200 None 2024-05-28 00:41:00,375 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/52 HTTP/1.1" 200 None 2024-05-28 00:41:00,856 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/52/comments HTTP/1.1" 200 None 2024-05-28 00:41:01,317 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/48 HTTP/1.1" 200 None 2024-05-28 00:41:01,804 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/48/comments HTTP/1.1" 200 None 2024-05-28 00:41:01,807 [ scc.repo] DEBUG ## Branches found: 2024-05-28 00:41:01,807 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render 2024-05-28 00:41:01,807 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:41:01,807 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:41:01,816 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-05-28 00:41:01,826 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-05-28 00:41:01,827 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-05-28 00:41:01,836 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-05-28 00:41:01,846 [ scc.git] DEBUG Already up to date. 2024-05-28 00:41:01,846 [ scc.git] DEBUG Calling 'git fetch origin pull/59/head' 2024-05-28 00:41:02,241 [ scc.git] DEBUG From https://github.com/ome/omero-cli-render 2024-05-28 00:41:02,241 [ scc.git] DEBUG * branch refs/pull/59/head -> FETCH_HEAD 2024-05-28 00:41:02,247 [ scc.git] DEBUG ## Unique users: [] 2024-05-28 00:41:02,247 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:41:02,248 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:41:02,254 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b8fba620a2b882050c1858f3a7d8bee8c8efdede' 2024-05-28 00:41:02,260 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:41:02,267 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 59 (Apply settings to Plate) b8fba620a2b882050c1858f3a7d8bee8c8efdede' 2024-05-28 00:41:02,279 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-05-28 00:41:02,281 [ scc.git] DEBUG src/omero_cli_render.py | 49 ++++++++++++++++++++++++++++++++----------------- 2024-05-28 00:41:02,282 [ scc.git] DEBUG 1 file changed, 32 insertions(+), 17 deletions(-) 2024-05-28 00:41:02,440 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:41:02,442 [ scc.git] DEBUG Calling 'git submodule update' 2024-05-28 00:41:02,488 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:41:02,489 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:41:02,495 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-05-28 00:41:02,537 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-05-28 00:41:02,544 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f1225d93880> has no local changes 2024-05-28 00:41:02,545 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-cli-render Excluded PRs: - PR 62 dominikl 'Add export and impo(rt) commands' (stage: draft) - PR 54 dominikl 'Change rendering settings spec' (stage: draft) - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft) - PR 48 dominikl 'Don't start rendering engine to get settings' (stage: draft) Already up to date. Merged PRs: - PR 59 will-moore 'Apply settings to Plate' Generated by OMERO-plugins-push#79 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/)' 2024-05-28 00:41:02,556 [ scc.git] DEBUG [detached HEAD 4cc816a] merge master -Dorg -Ssuccess-only 2024-05-28 00:41:02,557 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:41:02,557 [ scc.repo] DEBUG ## PRs found: 2024-05-28 00:41:02,995 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls HTTP/1.1" 200 None 2024-05-28 00:41:03,471 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/161 HTTP/1.1" 200 None 2024-05-28 00:41:03,930 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/147 HTTP/1.1" 200 None 2024-05-28 00:41:04,389 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/147/comments HTTP/1.1" 200 None 2024-05-28 00:41:04,886 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/a14f62a940f4974a305b3f5858049ee493b898ef HTTP/1.1" 200 None 2024-05-28 00:41:05,381 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/a14f62a940f4974a305b3f5858049ee493b898ef/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-05-28 00:41:05,846 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/a14f62a940f4974a305b3f5858049ee493b898ef/check-suites?app_id=15368 HTTP/1.1" 200 None 2024-05-28 00:41:06,374 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/a14f62a940f4974a305b3f5858049ee493b898ef HTTP/1.1" 200 None 2024-05-28 00:41:06,795 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/a14f62a940f4974a305b3f5858049ee493b898ef?per_page=1 HTTP/1.1" 200 None 2024-05-28 00:41:07,230 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/a14f62a940f4974a305b3f5858049ee493b898ef HTTP/1.1" 200 None 2024-05-28 00:41:07,653 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/a14f62a940f4974a305b3f5858049ee493b898ef/status HTTP/1.1" 200 None 2024-05-28 00:41:07,654 [ scc.repo] DEBUG - PR 147 will-moore 'Name option' 2024-05-28 00:41:08,110 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/123 HTTP/1.1" 200 None 2024-05-28 00:41:08,717 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/123/comments HTTP/1.1" 200 None 2024-05-28 00:41:09,169 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/256245946/issues/123/comments?page=2 HTTP/1.1" 200 None 2024-05-28 00:41:09,663 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/553b35f498764274f8dc882fb54c7e0a30fb6737 HTTP/1.1" 200 None 2024-05-28 00:41:10,094 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/553b35f498764274f8dc882fb54c7e0a30fb6737/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-05-28 00:41:10,518 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/553b35f498764274f8dc882fb54c7e0a30fb6737 HTTP/1.1" 200 None 2024-05-28 00:41:10,943 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/553b35f498764274f8dc882fb54c7e0a30fb6737?per_page=1 HTTP/1.1" 200 2 2024-05-28 00:41:10,944 [ scc.repo] DEBUG - PR 123 will-moore 'Support export of Fileset:ID' 2024-05-28 00:41:11,395 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/118 HTTP/1.1" 200 None 2024-05-28 00:41:11,854 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/102 HTTP/1.1" 200 None 2024-05-28 00:41:12,393 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/102/comments HTTP/1.1" 200 None 2024-05-28 00:41:12,869 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f22d4074b7c458ad24320cf5a6f8adb9e686aa44 HTTP/1.1" 200 None 2024-05-28 00:41:13,347 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f22d4074b7c458ad24320cf5a6f8adb9e686aa44/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-05-28 00:41:13,840 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f22d4074b7c458ad24320cf5a6f8adb9e686aa44 HTTP/1.1" 200 None 2024-05-28 00:41:14,273 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/f22d4074b7c458ad24320cf5a6f8adb9e686aa44?per_page=1 HTTP/1.1" 200 2 2024-05-28 00:41:14,274 [ scc.repo] DEBUG - PR 102 will-moore 'Zarr export tests' 2024-05-28 00:41:14,274 [ scc.repo] DEBUG ## Branches found: 2024-05-28 00:41:14,274 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr 2024-05-28 00:41:14,274 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:41:14,274 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:41:14,281 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-05-28 00:41:14,288 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-05-28 00:41:14,288 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-05-28 00:41:14,295 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-05-28 00:41:14,302 [ scc.git] DEBUG Already up to date. 2024-05-28 00:41:14,302 [ scc.git] DEBUG Calling 'git fetch origin pull/102/head' 2024-05-28 00:41:14,680 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr 2024-05-28 00:41:14,680 [ scc.git] DEBUG * branch refs/pull/102/head -> FETCH_HEAD 2024-05-28 00:41:14,685 [ scc.git] DEBUG Calling 'git fetch origin pull/123/head' 2024-05-28 00:41:15,063 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr 2024-05-28 00:41:15,064 [ scc.git] DEBUG * branch refs/pull/123/head -> FETCH_HEAD 2024-05-28 00:41:15,068 [ scc.git] DEBUG Calling 'git fetch origin pull/147/head' 2024-05-28 00:41:15,577 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr 2024-05-28 00:41:15,577 [ scc.git] DEBUG * branch refs/pull/147/head -> FETCH_HEAD 2024-05-28 00:41:15,583 [ scc.git] DEBUG ## Unique users: [] 2024-05-28 00:41:15,583 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:41:15,583 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:41:15,589 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...f22d4074b7c458ad24320cf5a6f8adb9e686aa44' 2024-05-28 00:41:15,596 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:41:15,602 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 102 (Zarr export tests) f22d4074b7c458ad24320cf5a6f8adb9e686aa44' 2024-05-28 00:41:15,678 [ scc.git] DEBUG Auto-merging src/omero_zarr/cli.py 2024-05-28 00:41:15,678 [ scc.git] DEBUG Auto-merging src/omero_zarr/raw_pixels.py 2024-05-28 00:41:15,678 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/raw_pixels.py 2024-05-28 00:41:15,679 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2024-05-28 00:41:15,679 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2024-05-28 00:41:15,685 [ scc.git] DEBUG Calling 'git reset --hard 2ca566b8cd1b2f3787ce5c8017ef8d4d4ac39473' 2024-05-28 00:41:15,691 [ scc.git] DEBUG HEAD is now at 2ca566b Merge pull request #160 from ome/pre-commit-ci-update-config 2024-05-28 00:41:15,845 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:41:15,847 [ scc.git] DEBUG Calling 'git merge-base 2ca566b8cd1b2f3787ce5c8017ef8d4d4ac39473 f22d4074b7c458ad24320cf5a6f8adb9e686aa44' 2024-05-28 00:41:15,854 [ scc.git] DEBUG Calling 'git diff --name-only 782a1cd0077bcc2871f21e9f0acdc25ae7745243..2ca566b8cd1b2f3787ce5c8017ef8d4d4ac39473' 2024-05-28 00:41:15,862 [ scc.git] INFO - PR 102 will-moore 'Zarr export tests' Conflicting PR. Removed from build [OMERO-plugins-push#79](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/consoleText) for more details. Possible conflicts: - Upstream changes - src/omero_zarr/raw_pixels.py --conflicts 2024-05-28 00:41:15,867 [ scc.config] DEBUG Found github.token 2024-05-28 00:41:15,867 [ scc.git] DEBUG Not adding comment to issue #102, already --conflicts. 2024-05-28 00:41:15,867 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...553b35f498764274f8dc882fb54c7e0a30fb6737' 2024-05-28 00:41:15,873 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:41:15,878 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 123 (Support export of Fileset:ID) 553b35f498764274f8dc882fb54c7e0a30fb6737' 2024-05-28 00:41:15,905 [ scc.git] DEBUG Auto-merging .isort.cfg 2024-05-28 00:41:15,906 [ scc.git] DEBUG CONFLICT (content): Merge conflict in .isort.cfg 2024-05-28 00:41:15,906 [ scc.git] DEBUG Auto-merging setup.py 2024-05-28 00:41:15,906 [ scc.git] DEBUG Auto-merging src/omero_zarr/cli.py 2024-05-28 00:41:15,906 [ scc.git] DEBUG Auto-merging src/omero_zarr/raw_pixels.py 2024-05-28 00:41:15,906 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/raw_pixels.py 2024-05-28 00:41:15,906 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2024-05-28 00:41:15,906 [ scc.git] DEBUG Auto-merging src/omero_zarr/util.py 2024-05-28 00:41:15,906 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2024-05-28 00:41:15,912 [ scc.git] DEBUG Calling 'git reset --hard 2ca566b8cd1b2f3787ce5c8017ef8d4d4ac39473' 2024-05-28 00:41:15,919 [ scc.git] DEBUG HEAD is now at 2ca566b Merge pull request #160 from ome/pre-commit-ci-update-config 2024-05-28 00:41:16,277 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:41:16,279 [ scc.git] DEBUG Calling 'git merge-base 2ca566b8cd1b2f3787ce5c8017ef8d4d4ac39473 553b35f498764274f8dc882fb54c7e0a30fb6737' 2024-05-28 00:41:16,287 [ scc.git] DEBUG Calling 'git diff --name-only eff38d0408f9d50de13b28dfe09e4382965e203f..2ca566b8cd1b2f3787ce5c8017ef8d4d4ac39473' 2024-05-28 00:41:16,293 [ scc.git] INFO - PR 123 will-moore 'Support export of Fileset:ID' Conflicting PR. Removed from build [OMERO-plugins-push#79](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/consoleText) for more details. Possible conflicts: - PR #102 will-moore 'Zarr export tests' - src/omero_zarr/raw_pixels.py - Upstream changes - src/omero_zarr/raw_pixels.py - .isort.cfg --conflicts 2024-05-28 00:41:16,298 [ scc.config] DEBUG Found github.token 2024-05-28 00:41:16,298 [ scc.git] DEBUG Not adding comment to issue #123, already --conflicts. 2024-05-28 00:41:16,298 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...a14f62a940f4974a305b3f5858049ee493b898ef' 2024-05-28 00:41:16,304 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:41:16,308 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 147 (Name option) a14f62a940f4974a305b3f5858049ee493b898ef' 2024-05-28 00:41:16,321 [ scc.git] DEBUG Auto-merging src/omero_zarr/masks.py 2024-05-28 00:41:16,321 [ scc.git] DEBUG Auto-merging src/omero_zarr/raw_pixels.py 2024-05-28 00:41:16,321 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-05-28 00:41:16,324 [ scc.git] DEBUG README.rst | 30 ++++++++++++++++++------------ 2024-05-28 00:41:16,324 [ scc.git] DEBUG src/omero_zarr/cli.py | 9 +++++++++ 2024-05-28 00:41:16,324 [ scc.git] DEBUG src/omero_zarr/masks.py | 4 ++-- 2024-05-28 00:41:16,324 [ scc.git] DEBUG src/omero_zarr/raw_pixels.py | 28 +++++++++++++++++++++++----- 2024-05-28 00:41:16,324 [ scc.git] DEBUG src/omero_zarr/util.py | 2 +- 2024-05-28 00:41:16,325 [ scc.git] DEBUG 5 files changed, 53 insertions(+), 20 deletions(-) 2024-05-28 00:41:16,697 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:41:16,699 [ scc.git] DEBUG Calling 'git submodule update' 2024-05-28 00:41:16,741 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:41:16,742 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:41:16,749 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-05-28 00:41:16,786 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-05-28 00:41:16,792 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f1224c87b50> has no local changes 2024-05-28 00:41:16,792 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-cli-zarr Excluded PRs: - PR 161 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) - PR 118 sbesson 'Allow to use bioformats2raw to export HCS data' (stage: draft) Already up to date. Merged PRs: - PR 147 will-moore 'Name option' Conflicting PRs (not included): - PR 102 will-moore 'Zarr export tests' - PR 123 will-moore 'Support export of Fileset:ID' Generated by OMERO-plugins-push#79 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/)' 2024-05-28 00:41:16,801 [ scc.git] DEBUG [detached HEAD aecc68f] merge master -Dorg -Ssuccess-only 2024-05-28 00:41:16,801 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:41:16,801 [ scc.repo] DEBUG ## PRs found: 2024-05-28 00:41:17,238 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls HTTP/1.1" 200 None 2024-05-28 00:41:17,695 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/562 HTTP/1.1" 200 None 2024-05-28 00:41:18,145 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/562/comments HTTP/1.1" 200 None 2024-05-28 00:41:18,630 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/0c814d66251860ddb01c00ade8469e45f7a1be23 HTTP/1.1" 200 None 2024-05-28 00:41:19,104 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/0c814d66251860ddb01c00ade8469e45f7a1be23/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-05-28 00:41:19,590 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/0c814d66251860ddb01c00ade8469e45f7a1be23/check-suites?app_id=15368 HTTP/1.1" 200 None 2024-05-28 00:41:20,083 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/0c814d66251860ddb01c00ade8469e45f7a1be23 HTTP/1.1" 200 None 2024-05-28 00:41:20,492 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/0c814d66251860ddb01c00ade8469e45f7a1be23?per_page=1 HTTP/1.1" 200 2 2024-05-28 00:41:20,494 [ scc.repo] DEBUG - PR 562 will-moore 'Add changelog 7.0.0' 2024-05-28 00:41:20,970 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/560 HTTP/1.1" 200 None 2024-05-28 00:41:21,435 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/560/comments HTTP/1.1" 200 None 2024-05-28 00:41:21,953 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/b7cad07be139b0ba61a8d0fc2bf3033f90909569 HTTP/1.1" 200 None 2024-05-28 00:41:22,435 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/b7cad07be139b0ba61a8d0fc2bf3033f90909569/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-05-28 00:41:22,897 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/b7cad07be139b0ba61a8d0fc2bf3033f90909569/check-suites?app_id=15368 HTTP/1.1" 200 None 2024-05-28 00:41:23,395 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/b7cad07be139b0ba61a8d0fc2bf3033f90909569 HTTP/1.1" 200 None 2024-05-28 00:41:23,810 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/b7cad07be139b0ba61a8d0fc2bf3033f90909569?per_page=1 HTTP/1.1" 200 2 2024-05-28 00:41:23,811 [ scc.repo] DEBUG - PR 560 will-moore 'Max projection bytes' 2024-05-28 00:41:24,259 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/555 HTTP/1.1" 200 None 2024-05-28 00:41:24,691 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/555/comments HTTP/1.1" 200 None 2024-05-28 00:41:25,193 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/3179811fd0a1d65e2dc5f56013cf92e086da24ab HTTP/1.1" 200 None 2024-05-28 00:41:25,668 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/3179811fd0a1d65e2dc5f56013cf92e086da24ab/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-05-28 00:41:26,130 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/3179811fd0a1d65e2dc5f56013cf92e086da24ab/check-suites?app_id=15368 HTTP/1.1" 200 None 2024-05-28 00:41:26,579 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/3179811fd0a1d65e2dc5f56013cf92e086da24ab HTTP/1.1" 200 None 2024-05-28 00:41:26,984 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/3179811fd0a1d65e2dc5f56013cf92e086da24ab?per_page=1 HTTP/1.1" 200 2 2024-05-28 00:41:26,984 [ scc.repo] DEBUG - PR 555 will-moore 'Points in shape editor' 2024-05-28 00:41:27,434 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/549 HTTP/1.1" 200 None 2024-05-28 00:41:27,945 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/6b34dcc58aee2bb7adb2a2f1a2fb1259944f9c24 HTTP/1.1" 200 None 2024-05-28 00:41:28,409 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/6b34dcc58aee2bb7adb2a2f1a2fb1259944f9c24/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-05-28 00:41:28,888 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/6b34dcc58aee2bb7adb2a2f1a2fb1259944f9c24/check-suites?app_id=15368 HTTP/1.1" 200 None 2024-05-28 00:41:29,420 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/6b34dcc58aee2bb7adb2a2f1a2fb1259944f9c24 HTTP/1.1" 200 None 2024-05-28 00:41:29,837 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/6b34dcc58aee2bb7adb2a2f1a2fb1259944f9c24?per_page=1 HTTP/1.1" 200 2 2024-05-28 00:41:29,838 [ scc.repo] DEBUG - PR 549 will-moore 'Inset feature' 2024-05-28 00:41:30,301 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/543 HTTP/1.1" 200 None 2024-05-28 00:41:30,757 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/543/comments HTTP/1.1" 200 None 2024-05-28 00:41:30,758 [ scc.repo] DEBUG ## Branches found: 2024-05-28 00:41:30,758 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure 2024-05-28 00:41:30,758 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:41:30,758 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:41:30,765 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-05-28 00:41:30,770 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-05-28 00:41:30,770 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-05-28 00:41:30,776 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-05-28 00:41:30,781 [ scc.git] DEBUG Already up to date. 2024-05-28 00:41:30,781 [ scc.git] DEBUG Calling 'git fetch origin pull/549/head' 2024-05-28 00:41:31,274 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2024-05-28 00:41:31,275 [ scc.git] DEBUG * branch refs/pull/549/head -> FETCH_HEAD 2024-05-28 00:41:31,281 [ scc.git] DEBUG Calling 'git fetch origin pull/555/head' 2024-05-28 00:41:31,680 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2024-05-28 00:41:31,680 [ scc.git] DEBUG * branch refs/pull/555/head -> FETCH_HEAD 2024-05-28 00:41:31,685 [ scc.git] DEBUG Calling 'git fetch origin pull/560/head' 2024-05-28 00:41:32,166 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2024-05-28 00:41:32,166 [ scc.git] DEBUG * branch refs/pull/560/head -> FETCH_HEAD 2024-05-28 00:41:32,171 [ scc.git] DEBUG Calling 'git fetch origin pull/562/head' 2024-05-28 00:41:32,553 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2024-05-28 00:41:32,553 [ scc.git] DEBUG * branch refs/pull/562/head -> FETCH_HEAD 2024-05-28 00:41:32,558 [ scc.git] DEBUG ## Unique users: [] 2024-05-28 00:41:32,558 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:41:32,558 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:41:32,564 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6b34dcc58aee2bb7adb2a2f1a2fb1259944f9c24' 2024-05-28 00:41:32,572 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:41:32,578 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 549 (Inset feature) 6b34dcc58aee2bb7adb2a2f1a2fb1259944f9c24' 2024-05-28 00:41:32,724 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-05-28 00:41:32,730 [ scc.git] DEBUG src/js/models/figure_model.js | 8 +++- 2024-05-28 00:41:32,730 [ scc.git] DEBUG src/js/models/panel_model.js | 84 +++++++++++++++++++++++++++++++++++ 2024-05-28 00:41:32,730 [ scc.git] DEBUG src/js/shapeEditorTest.js | 7 +++ 2024-05-28 00:41:32,730 [ scc.git] DEBUG src/js/shape_editor/rect.js | 33 +++++++++++++- 2024-05-28 00:41:32,730 [ scc.git] DEBUG src/js/shape_editor/shape_manager.js | 1 + 2024-05-28 00:41:32,730 [ scc.git] DEBUG src/js/views/figure_view.js | 7 ++- 2024-05-28 00:41:32,730 [ scc.git] DEBUG src/js/views/right_panel_view.js | 74 +++++++++++++++++++++++++++++- 2024-05-28 00:41:32,730 [ scc.git] DEBUG src/js/views/util.js | 54 ++++++++++++++++++++++ 2024-05-28 00:41:32,730 [ scc.git] DEBUG src/templates/rois_form.template.html | 7 +++ 2024-05-28 00:41:32,730 [ scc.git] DEBUG 9 files changed, 270 insertions(+), 5 deletions(-) 2024-05-28 00:41:32,896 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:41:32,897 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3179811fd0a1d65e2dc5f56013cf92e086da24ab' 2024-05-28 00:41:32,905 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:41:32,909 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 555 (Points in shape editor) 3179811fd0a1d65e2dc5f56013cf92e086da24ab' 2024-05-28 00:41:32,928 [ scc.git] DEBUG Auto-merging src/js/models/panel_model.js 2024-05-28 00:41:32,928 [ scc.git] DEBUG Auto-merging src/js/shapeEditorTest.js 2024-05-28 00:41:32,928 [ scc.git] DEBUG Auto-merging src/js/shape_editor/shape_manager.js 2024-05-28 00:41:32,929 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-05-28 00:41:32,935 [ scc.git] DEBUG .../scripts/omero/figure_scripts/Figure_To_Pdf.py | 8 +- 2024-05-28 00:41:32,935 [ scc.git] DEBUG src/css/figure.css | 4 + 2024-05-28 00:41:32,935 [ scc.git] DEBUG src/images/point-icon-24.png | Bin 0 -> 2477 bytes 2024-05-28 00:41:32,935 [ scc.git] DEBUG src/js/models/panel_model.js | 2 +- 2024-05-28 00:41:32,935 [ scc.git] DEBUG src/js/shapeEditorTest.js | 5 + 2024-05-28 00:41:32,935 [ scc.git] DEBUG src/js/shape_editor/ellipse.js | 474 ++++++++++++++++++++- 2024-05-28 00:41:32,935 [ scc.git] DEBUG src/js/shape_editor/shape_manager.js | 12 +- 2024-05-28 00:41:32,935 [ scc.git] DEBUG src/js/views/roi_loader_view.js | 1 + 2024-05-28 00:41:32,935 [ scc.git] DEBUG src/shapeEditorTest.html | 4 +- 2024-05-28 00:41:32,935 [ scc.git] DEBUG src/templates/shapes/shape_toolbar.template.html | 3 + 2024-05-28 00:41:32,935 [ scc.git] DEBUG 10 files changed, 502 insertions(+), 11 deletions(-) 2024-05-28 00:41:32,935 [ scc.git] DEBUG create mode 100644 src/images/point-icon-24.png 2024-05-28 00:41:33,309 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:41:33,310 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b7cad07be139b0ba61a8d0fc2bf3033f90909569' 2024-05-28 00:41:33,318 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:41:33,324 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 560 (Max projection bytes) b7cad07be139b0ba61a8d0fc2bf3033f90909569' 2024-05-28 00:41:33,538 [ scc.git] DEBUG Auto-merging omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 2024-05-28 00:41:33,538 [ scc.git] DEBUG Auto-merging src/css/figure.css 2024-05-28 00:41:33,538 [ scc.git] DEBUG Auto-merging src/js/models/figure_model.js 2024-05-28 00:41:33,538 [ scc.git] DEBUG Auto-merging src/js/models/panel_model.js 2024-05-28 00:41:33,538 [ scc.git] DEBUG Auto-merging src/js/views/right_panel_view.js 2024-05-28 00:41:33,539 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-05-28 00:41:33,546 [ scc.git] DEBUG .../scripts/omero/figure_scripts/Figure_To_Pdf.py | 24 +++++++-- 2024-05-28 00:41:33,546 [ scc.git] DEBUG omero_figure/urls.py | 8 +++ 2024-05-28 00:41:33,546 [ scc.git] DEBUG omero_figure/views.py | 58 ++++++++++++++++++++++ 2024-05-28 00:41:33,546 [ scc.git] DEBUG src/css/figure.css | 5 -- 2024-05-28 00:41:33,547 [ scc.git] DEBUG src/index.html | 1 + 2024-05-28 00:41:33,547 [ scc.git] DEBUG src/js/models/figure_model.js | 29 ++++++++++- 2024-05-28 00:41:33,547 [ scc.git] DEBUG src/js/models/panel_model.js | 29 ++++++++++- 2024-05-28 00:41:33,547 [ scc.git] DEBUG src/js/views/info_panel_view.js | 3 +- 2024-05-28 00:41:33,547 [ scc.git] DEBUG src/js/views/modal_views.js | 2 + 2024-05-28 00:41:33,547 [ scc.git] DEBUG src/js/views/panel_view.js | 2 +- 2024-05-28 00:41:33,547 [ scc.git] DEBUG src/js/views/right_panel_view.js | 5 ++ 2024-05-28 00:41:33,547 [ scc.git] DEBUG src/js/views/scalebar_form_view.js | 3 +- 2024-05-28 00:41:33,547 [ scc.git] DEBUG src/templates/image_display_options.template.html | 4 +- 2024-05-28 00:41:33,547 [ scc.git] DEBUG src/templates/info_panel.template.html | 2 + 2024-05-28 00:41:33,547 [ scc.git] DEBUG 14 files changed, 161 insertions(+), 14 deletions(-) 2024-05-28 00:41:33,717 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:41:33,718 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...0c814d66251860ddb01c00ade8469e45f7a1be23' 2024-05-28 00:41:33,727 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:41:33,733 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 562 (Add changelog 7.0.0) 0c814d66251860ddb01c00ade8469e45f7a1be23' 2024-05-28 00:41:33,750 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-05-28 00:41:33,753 [ scc.git] DEBUG CHANGELOG.md | 10 ++++++++++ 2024-05-28 00:41:33,753 [ scc.git] DEBUG 1 file changed, 10 insertions(+) 2024-05-28 00:41:34,117 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:41:34,119 [ scc.git] DEBUG Calling 'git submodule update' 2024-05-28 00:41:34,158 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:41:34,159 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:41:34,164 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-05-28 00:41:34,202 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-05-28 00:41:34,212 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f1224cd1f70> has no local changes 2024-05-28 00:41:34,212 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-figure Excluded PRs: - PR 543 will-moore 'Plate well labels' (stage: draft) Already up to date. Merged PRs: - PR 549 will-moore 'Inset feature' - PR 555 will-moore 'Points in shape editor' - PR 560 will-moore 'Max projection bytes' - PR 562 will-moore 'Add changelog 7.0.0' Generated by OMERO-plugins-push#79 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/)' 2024-05-28 00:41:34,221 [ scc.git] DEBUG [detached HEAD 368c49a0] merge master -Dorg -Ssuccess-only 2024-05-28 00:41:34,221 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:41:34,222 [ scc.repo] DEBUG ## PRs found: 2024-05-28 00:41:34,604 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/pulls HTTP/1.1" 200 None 2024-05-28 00:41:35,033 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/18 HTTP/1.1" 200 None 2024-05-28 00:41:35,472 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/18/comments HTTP/1.1" 200 None 2024-05-28 00:41:35,976 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337 HTTP/1.1" 200 None 2024-05-28 00:41:36,424 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-05-28 00:41:36,901 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337 HTTP/1.1" 200 None 2024-05-28 00:41:37,318 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/statuses/45aed4d15501fa5a524a8b500af8d426f0f6b337?per_page=1 HTTP/1.1" 200 2 2024-05-28 00:41:37,319 [ scc.repo] DEBUG - PR 18 jburel 'default size z value' 2024-05-28 00:41:37,319 [ scc.repo] DEBUG ## Branches found: 2024-05-28 00:41:37,319 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage 2024-05-28 00:41:37,319 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:41:37,320 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:41:37,325 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-05-28 00:41:37,331 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-05-28 00:41:37,332 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-05-28 00:41:37,337 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-05-28 00:41:37,344 [ scc.git] DEBUG Already up to date. 2024-05-28 00:41:37,344 [ scc.git] DEBUG Calling 'git fetch origin pull/18/head' 2024-05-28 00:41:37,730 [ scc.git] DEBUG From https://github.com/ome/omero-fpbioimage 2024-05-28 00:41:37,730 [ scc.git] DEBUG * branch refs/pull/18/head -> FETCH_HEAD 2024-05-28 00:41:37,737 [ scc.git] DEBUG ## Unique users: [] 2024-05-28 00:41:37,737 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:41:37,737 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:41:37,744 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45aed4d15501fa5a524a8b500af8d426f0f6b337' 2024-05-28 00:41:37,751 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:41:37,763 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 18 (default size z value) 45aed4d15501fa5a524a8b500af8d426f0f6b337' 2024-05-28 00:41:37,776 [ scc.git] DEBUG Auto-merging omero_fpbioimage/views.py 2024-05-28 00:41:37,777 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-05-28 00:41:37,779 [ scc.git] DEBUG omero_fpbioimage/views.py | 2 ++ 2024-05-28 00:41:37,780 [ scc.git] DEBUG 1 file changed, 2 insertions(+) 2024-05-28 00:41:37,940 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:41:37,942 [ scc.git] DEBUG Calling 'git submodule update' 2024-05-28 00:41:37,988 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:41:37,988 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:41:37,995 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-05-28 00:41:38,050 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-05-28 00:41:38,057 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f1224cd1e20> has no local changes 2024-05-28 00:41:38,057 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-fpbioimage Already up to date. Merged PRs: - PR 18 jburel 'default size z value' Generated by OMERO-plugins-push#79 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/)' 2024-05-28 00:41:38,067 [ scc.git] DEBUG [detached HEAD ccb6314] merge master -Dorg -Ssuccess-only 2024-05-28 00:41:38,067 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:41:38,068 [ scc.repo] DEBUG ## PRs found: 2024-05-28 00:41:38,422 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/pulls HTTP/1.1" 200 None 2024-05-28 00:41:38,888 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/111 HTTP/1.1" 200 None 2024-05-28 00:41:38,889 [ scc.repo] DEBUG # ... Include label: dependencies 2024-05-28 00:41:39,431 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/37cfaf2f52e78b2cab2f49b0c02c7553d2b57893 HTTP/1.1" 200 None 2024-05-28 00:41:39,929 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/37cfaf2f52e78b2cab2f49b0c02c7553d2b57893/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-05-28 00:41:40,391 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/37cfaf2f52e78b2cab2f49b0c02c7553d2b57893/check-suites?app_id=15368 HTTP/1.1" 200 None 2024-05-28 00:41:40,908 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/37cfaf2f52e78b2cab2f49b0c02c7553d2b57893 HTTP/1.1" 200 None 2024-05-28 00:41:41,327 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/37cfaf2f52e78b2cab2f49b0c02c7553d2b57893?per_page=1 HTTP/1.1" 200 2 2024-05-28 00:41:41,329 [ scc.repo] DEBUG - PR 111 dependabot[bot] 'Bump semver from 5.7.0 to 5.7.2' 2024-05-28 00:41:41,329 [ scc.repo] DEBUG ## Branches found: 2024-05-28 00:41:41,329 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery 2024-05-28 00:41:41,329 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:41:41,329 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:41:41,337 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-05-28 00:41:41,344 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-05-28 00:41:41,344 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-05-28 00:41:41,351 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-05-28 00:41:41,359 [ scc.git] DEBUG Already up to date. 2024-05-28 00:41:41,359 [ scc.git] DEBUG Calling 'git fetch origin pull/111/head' 2024-05-28 00:41:41,735 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2024-05-28 00:41:41,735 [ scc.git] DEBUG * branch refs/pull/111/head -> FETCH_HEAD 2024-05-28 00:41:41,740 [ scc.git] DEBUG ## Unique users: [] 2024-05-28 00:41:41,740 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:41:41,740 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:41:41,748 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...37cfaf2f52e78b2cab2f49b0c02c7553d2b57893' 2024-05-28 00:41:41,756 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:41:41,763 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 111 (Bump semver from 5.7.0 to 5.7.2) 37cfaf2f52e78b2cab2f49b0c02c7553d2b57893' 2024-05-28 00:41:41,776 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-05-28 00:41:41,782 [ scc.git] DEBUG package-lock.json | 18 ++++++------------ 2024-05-28 00:41:41,782 [ scc.git] DEBUG 1 file changed, 6 insertions(+), 12 deletions(-) 2024-05-28 00:41:41,941 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:41:41,943 [ scc.git] DEBUG Calling 'git submodule update' 2024-05-28 00:41:41,992 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:41:41,992 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:41:42,000 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-05-28 00:41:42,044 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-05-28 00:41:42,052 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f1224cb3d30> has no local changes 2024-05-28 00:41:42,052 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-gallery Already up to date. Merged PRs: - PR 111 dependabot[bot] 'Bump semver from 5.7.0 to 5.7.2' Generated by OMERO-plugins-push#79 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/)' 2024-05-28 00:41:42,062 [ scc.git] DEBUG [detached HEAD ebc0190] merge master -Dorg -Ssuccess-only 2024-05-28 00:41:42,062 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:41:42,062 [ scc.repo] DEBUG ## PRs found: 2024-05-28 00:41:42,467 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls HTTP/1.1" 200 None 2024-05-28 00:41:42,939 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/471 HTTP/1.1" 200 None 2024-05-28 00:41:43,424 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/471/comments HTTP/1.1" 200 None 2024-05-28 00:41:43,914 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9 HTTP/1.1" 200 None 2024-05-28 00:41:44,365 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-05-28 00:41:44,817 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9/check-suites?app_id=15368 HTTP/1.1" 200 None 2024-05-28 00:41:45,329 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9 HTTP/1.1" 200 None 2024-05-28 00:41:45,748 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/448d042a58da05a522531356cc58c1e35b5744d9?per_page=1 HTTP/1.1" 200 2 2024-05-28 00:41:45,749 [ scc.repo] DEBUG - PR 471 will-moore 'Z projection disabled tooltip' 2024-05-28 00:41:46,203 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/465 HTTP/1.1" 200 None 2024-05-28 00:41:46,706 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/465/comments HTTP/1.1" 200 None 2024-05-28 00:41:47,191 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/63dd9266a853ff522780066673d0ae2b770238cd HTTP/1.1" 200 None 2024-05-28 00:41:47,683 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/63dd9266a853ff522780066673d0ae2b770238cd/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-05-28 00:41:48,150 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/63dd9266a853ff522780066673d0ae2b770238cd/check-suites?app_id=15368 HTTP/1.1" 200 None 2024-05-28 00:41:48,607 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/63dd9266a853ff522780066673d0ae2b770238cd HTTP/1.1" 200 None 2024-05-28 00:41:49,018 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/63dd9266a853ff522780066673d0ae2b770238cd?per_page=1 HTTP/1.1" 200 2 2024-05-28 00:41:49,020 [ scc.repo] DEBUG - PR 465 will-moore 'Save as Figure' 2024-05-28 00:41:49,476 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/460 HTTP/1.1" 200 None 2024-05-28 00:41:50,007 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/460/comments HTTP/1.1" 200 None 2024-05-28 00:41:50,500 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/dada2c46211e3bf8015cc47464ab2761ef74ca30 HTTP/1.1" 200 None 2024-05-28 00:41:50,955 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/dada2c46211e3bf8015cc47464ab2761ef74ca30/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-05-28 00:41:51,441 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/dada2c46211e3bf8015cc47464ab2761ef74ca30 HTTP/1.1" 200 None 2024-05-28 00:41:51,867 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/dada2c46211e3bf8015cc47464ab2761ef74ca30?per_page=1 HTTP/1.1" 200 2 2024-05-28 00:41:51,868 [ scc.repo] DEBUG - PR 460 will-moore 'Channel min spinner fix' 2024-05-28 00:41:51,869 [ scc.repo] DEBUG ## Branches found: 2024-05-28 00:41:51,869 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer 2024-05-28 00:41:51,869 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:41:51,869 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:41:51,877 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-05-28 00:41:51,883 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-05-28 00:41:51,883 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-05-28 00:41:51,890 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-05-28 00:41:51,898 [ scc.git] DEBUG Already up to date. 2024-05-28 00:41:51,898 [ scc.git] DEBUG Calling 'git fetch origin pull/460/head' 2024-05-28 00:41:52,349 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2024-05-28 00:41:52,349 [ scc.git] DEBUG * branch refs/pull/460/head -> FETCH_HEAD 2024-05-28 00:41:52,355 [ scc.git] DEBUG Calling 'git fetch origin pull/465/head' 2024-05-28 00:41:52,724 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2024-05-28 00:41:52,725 [ scc.git] DEBUG * branch refs/pull/465/head -> FETCH_HEAD 2024-05-28 00:41:52,732 [ scc.git] DEBUG Calling 'git fetch origin pull/471/head' 2024-05-28 00:41:53,107 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2024-05-28 00:41:53,107 [ scc.git] DEBUG * branch refs/pull/471/head -> FETCH_HEAD 2024-05-28 00:41:53,112 [ scc.git] DEBUG ## Unique users: [] 2024-05-28 00:41:53,112 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:41:53,112 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:41:53,119 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...dada2c46211e3bf8015cc47464ab2761ef74ca30' 2024-05-28 00:41:53,127 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:41:53,134 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 460 (Channel min spinner fix) dada2c46211e3bf8015cc47464ab2761ef74ca30' 2024-05-28 00:41:53,148 [ scc.git] DEBUG Auto-merging src/model/image_info.js 2024-05-28 00:41:53,148 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-05-28 00:41:53,153 [ scc.git] DEBUG src/model/image_info.js | 7 ++++--- 2024-05-28 00:41:53,153 [ scc.git] DEBUG src/settings/channel-range.js | 4 +++- 2024-05-28 00:41:53,153 [ scc.git] DEBUG 2 files changed, 7 insertions(+), 4 deletions(-) 2024-05-28 00:41:53,316 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:41:53,317 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...63dd9266a853ff522780066673d0ae2b770238cd' 2024-05-28 00:41:53,326 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:41:53,334 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 465 (Save as Figure) 63dd9266a853ff522780066673d0ae2b770238cd' 2024-05-28 00:41:53,359 [ scc.git] DEBUG Auto-merging plugin/omero_iviewer/views.py 2024-05-28 00:41:53,360 [ scc.git] DEBUG Auto-merging src/app/context.js 2024-05-28 00:41:53,360 [ scc.git] DEBUG Auto-merging src/utils/constants.js 2024-05-28 00:41:53,360 [ scc.git] DEBUG Auto-merging src/viewers/viewer/Viewer.js 2024-05-28 00:41:53,361 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-05-28 00:41:53,368 [ scc.git] DEBUG plugin/omero_iviewer/views.py | 17 +++- 2024-05-28 00:41:53,368 [ scc.git] DEBUG src/app/context.js | 6 +- 2024-05-28 00:41:53,368 [ scc.git] DEBUG src/app/header.html | 5 + 2024-05-28 00:41:53,368 [ scc.git] DEBUG src/app/header.js | 45 ++++++++- 2024-05-28 00:41:53,368 [ scc.git] DEBUG src/utils/constants.js | 6 ++ 2024-05-28 00:41:53,368 [ scc.git] DEBUG src/utils/figure.js | 217 ++++++++++++++++++++++++++++++++++++++++++ 2024-05-28 00:41:53,369 [ scc.git] DEBUG 6 files changed, 290 insertions(+), 6 deletions(-) 2024-05-28 00:41:53,369 [ scc.git] DEBUG create mode 100644 src/utils/figure.js 2024-05-28 00:41:53,723 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:41:53,725 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...448d042a58da05a522531356cc58c1e35b5744d9' 2024-05-28 00:41:53,738 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:41:53,748 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 471 (Z projection disabled tooltip) 448d042a58da05a522531356cc58c1e35b5744d9' 2024-05-28 00:41:53,768 [ scc.git] DEBUG Auto-merging src/controls/dimension-slider.js 2024-05-28 00:41:53,768 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-05-28 00:41:53,772 [ scc.git] DEBUG src/controls/dimension-slider.html | 2 +- 2024-05-28 00:41:53,773 [ scc.git] DEBUG src/controls/dimension-slider.js | 20 ++++++++++++++++++++ 2024-05-28 00:41:53,773 [ scc.git] DEBUG 2 files changed, 21 insertions(+), 1 deletion(-) 2024-05-28 00:41:54,128 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:41:54,130 [ scc.git] DEBUG Calling 'git submodule update' 2024-05-28 00:41:54,177 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:41:54,178 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:41:54,186 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-05-28 00:41:54,236 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-05-28 00:41:54,246 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f1224c943a0> has no local changes 2024-05-28 00:41:54,246 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-iviewer Excluded PRs: - PR 420 will-moore 'Add release process to README' (exclude comment) - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment) Already up to date. Merged PRs: - PR 460 will-moore 'Channel min spinner fix' - PR 465 will-moore 'Save as Figure' - PR 471 will-moore 'Z projection disabled tooltip' Generated by OMERO-plugins-push#79 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/)' 2024-05-28 00:41:54,260 [ scc.git] DEBUG [detached HEAD fc1e8b5] merge master -Dorg -Ssuccess-only 2024-05-28 00:41:54,260 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:41:54,260 [ scc.repo] DEBUG ## PRs found: 2024-05-28 00:41:54,650 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/pulls HTTP/1.1" 200 None 2024-05-28 00:41:55,130 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None 2024-05-28 00:41:55,627 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None 2024-05-28 00:41:56,102 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None 2024-05-28 00:41:56,572 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-05-28 00:41:57,062 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322/check-suites?app_id=15368 HTTP/1.1" 200 None 2024-05-28 00:41:57,481 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None 2024-05-28 00:41:57,896 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/45ee35acc44a7d119aa20b38b0427efbe5405322?per_page=1 HTTP/1.1" 200 2 2024-05-28 00:41:57,897 [ scc.repo] DEBUG - PR 74 will-moore 'mapr extension of webclient' 2024-05-28 00:41:57,897 [ scc.repo] DEBUG ## Branches found: 2024-05-28 00:41:57,897 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr 2024-05-28 00:41:57,898 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:41:57,898 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:41:57,907 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-05-28 00:41:57,917 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-05-28 00:41:57,917 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-05-28 00:41:57,928 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-05-28 00:41:57,937 [ scc.git] DEBUG Already up to date. 2024-05-28 00:41:57,937 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head' 2024-05-28 00:41:58,335 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2024-05-28 00:41:58,335 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD 2024-05-28 00:41:58,341 [ scc.git] DEBUG ## Unique users: [] 2024-05-28 00:41:58,341 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:41:58,341 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:41:58,347 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45ee35acc44a7d119aa20b38b0427efbe5405322' 2024-05-28 00:41:58,355 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:41:58,360 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (mapr extension of webclient) 45ee35acc44a7d119aa20b38b0427efbe5405322' 2024-05-28 00:41:58,371 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-05-28 00:41:58,374 [ scc.git] DEBUG .../templates/webclient/base/base_container.html | 182 +++++++++++++ 2024-05-28 00:41:58,374 [ scc.git] DEBUG .../data/includes/right_plugin.general.js.html | 290 --------------------- 2024-05-28 00:41:58,374 [ scc.git] DEBUG requirements.txt | 2 +- 2024-05-28 00:41:58,374 [ scc.git] DEBUG 3 files changed, 183 insertions(+), 291 deletions(-) 2024-05-28 00:41:58,374 [ scc.git] DEBUG create mode 100644 omero_mapr/templates/webclient/base/base_container.html 2024-05-28 00:41:58,374 [ scc.git] DEBUG delete mode 100644 omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html 2024-05-28 00:41:58,520 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:41:58,521 [ scc.git] DEBUG Calling 'git submodule update' 2024-05-28 00:41:58,562 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:41:58,562 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:41:58,568 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-05-28 00:41:58,605 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-05-28 00:41:58,612 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f1224453b50> has no local changes 2024-05-28 00:41:58,613 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-mapr Excluded PRs: - PR 79 will-moore 'Right panel title' (exclude comment) Already up to date. Merged PRs: - PR 74 will-moore 'mapr extension of webclient' Generated by OMERO-plugins-push#79 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/)' 2024-05-28 00:41:58,622 [ scc.git] DEBUG [detached HEAD d304776] merge master -Dorg -Ssuccess-only 2024-05-28 00:41:58,622 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:41:58,623 [ scc.repo] DEBUG ## PRs found: 2024-05-28 00:41:59,063 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None 2024-05-28 00:41:59,515 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None 2024-05-28 00:42:00,011 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None 2024-05-28 00:42:00,521 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None 2024-05-28 00:42:00,982 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-05-28 00:42:01,483 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None 2024-05-28 00:42:01,900 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2 2024-05-28 00:42:01,901 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate' 2024-05-28 00:42:02,348 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None 2024-05-28 00:42:02,819 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None 2024-05-28 00:42:03,354 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None 2024-05-28 00:42:03,798 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-05-28 00:42:04,297 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None 2024-05-28 00:42:04,770 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2 2024-05-28 00:42:04,771 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names' 2024-05-28 00:42:04,771 [ scc.repo] DEBUG ## Branches found: 2024-05-28 00:42:04,771 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata 2024-05-28 00:42:04,772 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:42:04,772 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:42:04,779 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-05-28 00:42:04,784 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-05-28 00:42:04,785 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-05-28 00:42:04,790 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-05-28 00:42:04,796 [ scc.git] DEBUG Already up to date. 2024-05-28 00:42:04,797 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head' 2024-05-28 00:42:05,157 [ scc.git] DEBUG From https://github.com/ome/omero-metadata 2024-05-28 00:42:05,157 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD 2024-05-28 00:42:05,162 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head' 2024-05-28 00:42:05,541 [ scc.git] DEBUG From https://github.com/ome/omero-metadata 2024-05-28 00:42:05,542 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD 2024-05-28 00:42:05,551 [ scc.git] DEBUG ## Unique users: [] 2024-05-28 00:42:05,551 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:42:05,551 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:42:05,561 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102' 2024-05-28 00:42:05,573 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:42:05,580 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102' 2024-05-28 00:42:05,599 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py 2024-05-28 00:42:05,599 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py 2024-05-28 00:42:05,599 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py 2024-05-28 00:42:05,599 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py 2024-05-28 00:42:05,599 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2024-05-28 00:42:05,600 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2024-05-28 00:42:05,611 [ scc.git] DEBUG Calling 'git reset --hard e2fc5ec5aeb38953ac2a12cb7c980aeee5bf306c' 2024-05-28 00:42:05,623 [ scc.git] DEBUG HEAD is now at e2fc5ec Merge pull request #85 from sbesson/pytest_logging 2024-05-28 00:42:05,793 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:42:05,796 [ scc.git] DEBUG Calling 'git merge-base e2fc5ec5aeb38953ac2a12cb7c980aeee5bf306c 14f0448a90ccd781126a5c9dc267f4d0a6939102' 2024-05-28 00:42:05,810 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..e2fc5ec5aeb38953ac2a12cb7c980aeee5bf306c' 2024-05-28 00:42:05,821 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names' Conflicting PR. Removed from build [OMERO-plugins-push#79](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/consoleText) for more details. Possible conflicts: - Upstream changes - src/omero_metadata/cli.py - src/omero_metadata/populate.py --conflicts 2024-05-28 00:42:05,832 [ scc.config] DEBUG Found github.token 2024-05-28 00:42:05,832 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts. 2024-05-28 00:42:05,832 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7' 2024-05-28 00:42:05,849 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:42:05,880 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7' 2024-05-28 00:42:05,918 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py 2024-05-28 00:42:05,919 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py 2024-05-28 00:42:05,919 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py 2024-05-28 00:42:05,920 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2024-05-28 00:42:05,921 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2024-05-28 00:42:05,933 [ scc.git] DEBUG Calling 'git reset --hard e2fc5ec5aeb38953ac2a12cb7c980aeee5bf306c' 2024-05-28 00:42:05,948 [ scc.git] DEBUG HEAD is now at e2fc5ec Merge pull request #85 from sbesson/pytest_logging 2024-05-28 00:42:06,200 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:42:06,203 [ scc.git] DEBUG Calling 'git merge-base e2fc5ec5aeb38953ac2a12cb7c980aeee5bf306c 78e55539b68e351ed5ef202854718b49a37729a7' 2024-05-28 00:42:06,218 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..e2fc5ec5aeb38953ac2a12cb7c980aeee5bf306c' 2024-05-28 00:42:06,235 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate' Conflicting PR. Removed from build [OMERO-plugins-push#79](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/consoleText) for more details. Possible conflicts: - PR #55 kkoz 'Prevent users from creating columns with python keyword names' - src/omero_metadata/populate.py - Upstream changes - src/omero_metadata/populate.py --conflicts 2024-05-28 00:42:06,243 [ scc.config] DEBUG Found github.token 2024-05-28 00:42:06,243 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts. 2024-05-28 00:42:06,243 [ scc.git] DEBUG Calling 'git submodule update' 2024-05-28 00:42:06,298 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:42:06,299 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:42:06,309 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-05-28 00:42:06,363 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-05-28 00:42:06,376 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f1224c7df10> has no local changes 2024-05-28 00:42:06,377 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-metadata Already up to date. Conflicting PRs (not included): - PR 55 kkoz 'Prevent users from creating columns with python keyword names' - PR 64 will-moore 'Support images_by_name for Screen and Plate' Generated by OMERO-plugins-push#79 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/)' 2024-05-28 00:42:06,392 [ scc.git] DEBUG [detached HEAD c978373] merge master -Dorg -Ssuccess-only 2024-05-28 00:42:06,394 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:42:06,395 [ scc.repo] DEBUG ## PRs found: 2024-05-28 00:42:06,773 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None 2024-05-28 00:42:07,243 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/131 HTTP/1.1" 200 None 2024-05-28 00:42:07,247 [ scc.repo] DEBUG # ... Include label: dependencies 2024-05-28 00:42:07,824 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/a7d2dc0dc9098294c014cb634e1226fea404721f HTTP/1.1" 200 None 2024-05-28 00:42:08,360 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/a7d2dc0dc9098294c014cb634e1226fea404721f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-05-28 00:42:08,815 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/a7d2dc0dc9098294c014cb634e1226fea404721f/check-suites?app_id=15368 HTTP/1.1" 200 None 2024-05-28 00:42:09,275 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/a7d2dc0dc9098294c014cb634e1226fea404721f HTTP/1.1" 200 None 2024-05-28 00:42:09,706 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/a7d2dc0dc9098294c014cb634e1226fea404721f?per_page=1 HTTP/1.1" 200 2 2024-05-28 00:42:09,709 [ scc.repo] DEBUG - PR 131 dependabot[bot] 'Bump axios from 1.3.5 to 1.6.0' 2024-05-28 00:42:10,165 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/129 HTTP/1.1" 200 None 2024-05-28 00:42:10,168 [ scc.repo] DEBUG # ... Include label: dependencies 2024-05-28 00:42:10,698 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/733f52703019d4b6d7e375c121a25c107b64dbec HTTP/1.1" 200 None 2024-05-28 00:42:11,169 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/733f52703019d4b6d7e375c121a25c107b64dbec/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-05-28 00:42:11,668 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/733f52703019d4b6d7e375c121a25c107b64dbec/check-suites?app_id=15368 HTTP/1.1" 200 None 2024-05-28 00:42:12,209 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/733f52703019d4b6d7e375c121a25c107b64dbec HTTP/1.1" 200 None 2024-05-28 00:42:12,620 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/733f52703019d4b6d7e375c121a25c107b64dbec?per_page=1 HTTP/1.1" 200 2 2024-05-28 00:42:12,621 [ scc.repo] DEBUG - PR 129 dependabot[bot] 'Bump @babel/traverse from 7.21.4 to 7.23.2' 2024-05-28 00:42:13,092 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/128 HTTP/1.1" 200 None 2024-05-28 00:42:13,093 [ scc.repo] DEBUG # ... Include label: dependencies 2024-05-28 00:42:13,638 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/55ca13b67cc0254ed6e1a340952b8741cc54d680 HTTP/1.1" 200 None 2024-05-28 00:42:14,131 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/55ca13b67cc0254ed6e1a340952b8741cc54d680/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-05-28 00:42:14,644 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/55ca13b67cc0254ed6e1a340952b8741cc54d680/check-suites?app_id=15368 HTTP/1.1" 200 None 2024-05-28 00:42:15,094 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/55ca13b67cc0254ed6e1a340952b8741cc54d680 HTTP/1.1" 200 None 2024-05-28 00:42:15,525 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/55ca13b67cc0254ed6e1a340952b8741cc54d680?per_page=1 HTTP/1.1" 200 2 2024-05-28 00:42:15,528 [ scc.repo] DEBUG - PR 128 dependabot[bot] 'Bump postcss from 8.4.21 to 8.4.31' 2024-05-28 00:42:15,986 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None 2024-05-28 00:42:16,429 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None 2024-05-28 00:42:16,888 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None 2024-05-28 00:42:17,362 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None 2024-05-28 00:42:17,806 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None 2024-05-28 00:42:18,316 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None 2024-05-28 00:42:18,318 [ scc.repo] DEBUG ## Branches found: 2024-05-28 00:42:18,319 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade 2024-05-28 00:42:18,319 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:42:18,319 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:42:18,325 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-05-28 00:42:18,330 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-05-28 00:42:18,330 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-05-28 00:42:18,336 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-05-28 00:42:18,342 [ scc.git] DEBUG Already up to date. 2024-05-28 00:42:18,343 [ scc.git] DEBUG Calling 'git fetch origin pull/128/head' 2024-05-28 00:42:18,777 [ scc.git] DEBUG From https://github.com/ome/omero-parade 2024-05-28 00:42:18,777 [ scc.git] DEBUG * branch refs/pull/128/head -> FETCH_HEAD 2024-05-28 00:42:18,784 [ scc.git] DEBUG Calling 'git fetch origin pull/129/head' 2024-05-28 00:42:19,160 [ scc.git] DEBUG From https://github.com/ome/omero-parade 2024-05-28 00:42:19,161 [ scc.git] DEBUG * branch refs/pull/129/head -> FETCH_HEAD 2024-05-28 00:42:19,167 [ scc.git] DEBUG Calling 'git fetch origin pull/131/head' 2024-05-28 00:42:19,564 [ scc.git] DEBUG From https://github.com/ome/omero-parade 2024-05-28 00:42:19,565 [ scc.git] DEBUG * branch refs/pull/131/head -> FETCH_HEAD 2024-05-28 00:42:19,570 [ scc.git] DEBUG ## Unique users: [] 2024-05-28 00:42:19,570 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:42:19,570 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:42:19,577 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...55ca13b67cc0254ed6e1a340952b8741cc54d680' 2024-05-28 00:42:19,582 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:42:19,588 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 128 (Bump postcss from 8.4.21 to 8.4.31) 55ca13b67cc0254ed6e1a340952b8741cc54d680' 2024-05-28 00:42:19,598 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-05-28 00:42:19,601 [ scc.git] DEBUG package-lock.json | 12 ++++++++---- 2024-05-28 00:42:19,601 [ scc.git] DEBUG 1 file changed, 8 insertions(+), 4 deletions(-) 2024-05-28 00:42:19,774 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:42:19,775 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...733f52703019d4b6d7e375c121a25c107b64dbec' 2024-05-28 00:42:19,784 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:42:19,790 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 129 (Bump @babel/traverse from 7.21.4 to 7.23.2) 733f52703019d4b6d7e375c121a25c107b64dbec' 2024-05-28 00:42:19,802 [ scc.git] DEBUG Auto-merging package-lock.json 2024-05-28 00:42:19,803 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-05-28 00:42:19,806 [ scc.git] DEBUG package-lock.json | 121 +++++++++++++++++++++++++++--------------------------- 2024-05-28 00:42:19,806 [ scc.git] DEBUG 1 file changed, 61 insertions(+), 60 deletions(-) 2024-05-28 00:42:20,182 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:42:20,183 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...a7d2dc0dc9098294c014cb634e1226fea404721f' 2024-05-28 00:42:20,190 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:42:20,202 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 131 (Bump axios from 1.3.5 to 1.6.0) a7d2dc0dc9098294c014cb634e1226fea404721f' 2024-05-28 00:42:20,229 [ scc.git] DEBUG Auto-merging package-lock.json 2024-05-28 00:42:20,229 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-05-28 00:42:20,233 [ scc.git] DEBUG package-lock.json | 8 ++++---- 2024-05-28 00:42:20,233 [ scc.git] DEBUG package.json | 2 +- 2024-05-28 00:42:20,233 [ scc.git] DEBUG 2 files changed, 5 insertions(+), 5 deletions(-) 2024-05-28 00:42:20,586 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:42:20,587 [ scc.git] DEBUG Calling 'git submodule update' 2024-05-28 00:42:20,626 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:42:20,626 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:42:20,633 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-05-28 00:42:20,679 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-05-28 00:42:20,687 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f122440b640> has no local changes 2024-05-28 00:42:20,688 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-parade Excluded PRs: - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment) - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment) - PR 39 chris-allan 'Expand all for Screens' (exclude comment) Already up to date. Merged PRs: - PR 128 dependabot[bot] 'Bump postcss from 8.4.21 to 8.4.31' - PR 129 dependabot[bot] 'Bump @babel/traverse from 7.21.4 to 7.23.2' - PR 131 dependabot[bot] 'Bump axios from 1.3.5 to 1.6.0' Generated by OMERO-plugins-push#79 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/)' 2024-05-28 00:42:20,698 [ scc.git] DEBUG [detached HEAD 5b2d933] merge master -Dorg -Ssuccess-only 2024-05-28 00:42:20,698 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:42:20,698 [ scc.repo] DEBUG ## PRs found: 2024-05-28 00:42:21,123 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None 2024-05-28 00:42:21,591 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/14 HTTP/1.1" 200 None 2024-05-28 00:42:22,102 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/fb7700b8eb4b753884260b7921e65b58b29f954e HTTP/1.1" 200 None 2024-05-28 00:42:22,540 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/fb7700b8eb4b753884260b7921e65b58b29f954e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-05-28 00:42:22,978 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/fb7700b8eb4b753884260b7921e65b58b29f954e HTTP/1.1" 200 None 2024-05-28 00:42:23,392 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/fb7700b8eb4b753884260b7921e65b58b29f954e?per_page=1 HTTP/1.1" 200 2 2024-05-28 00:42:23,392 [ scc.repo] DEBUG - PR 14 jburel 'use conda-forge channel' 2024-05-28 00:42:23,392 [ scc.repo] DEBUG ## Branches found: 2024-05-28 00:42:23,392 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools 2024-05-28 00:42:23,393 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:42:23,393 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:42:23,399 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-05-28 00:42:23,405 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-05-28 00:42:23,405 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-05-28 00:42:23,411 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-05-28 00:42:23,416 [ scc.git] DEBUG Already up to date. 2024-05-28 00:42:23,417 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head' 2024-05-28 00:42:23,783 [ scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools 2024-05-28 00:42:23,784 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD 2024-05-28 00:42:23,788 [ scc.git] DEBUG ## Unique users: [] 2024-05-28 00:42:23,788 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:42:23,788 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:42:23,795 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...fb7700b8eb4b753884260b7921e65b58b29f954e' 2024-05-28 00:42:23,802 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:42:23,809 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (use conda-forge channel) fb7700b8eb4b753884260b7921e65b58b29f954e' 2024-05-28 00:42:23,823 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-05-28 00:42:23,984 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:42:23,985 [ scc.git] DEBUG Calling 'git submodule update' 2024-05-28 00:42:24,024 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:42:24,024 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:42:24,029 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-05-28 00:42:24,072 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-05-28 00:42:24,079 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f1224c88df0> has no local changes 2024-05-28 00:42:24,079 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-prometheus-tools Already up to date. Merged PRs: - PR 14 jburel 'use conda-forge channel' Generated by OMERO-plugins-push#79 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/)' 2024-05-28 00:42:24,088 [ scc.git] DEBUG [detached HEAD a476116] merge master -Dorg -Ssuccess-only 2024-05-28 00:42:24,088 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:42:24,089 [ scc.repo] DEBUG ## PRs found: 2024-05-28 00:42:24,512 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None 2024-05-28 00:42:24,961 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/28 HTTP/1.1" 200 None 2024-05-28 00:42:25,460 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/6 HTTP/1.1" 200 None 2024-05-28 00:42:25,911 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/6/comments HTTP/1.1" 200 None 2024-05-28 00:42:26,405 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/20757563a49aa42b99a0c43176f6ef747e965b61 HTTP/1.1" 200 None 2024-05-28 00:42:26,830 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/20757563a49aa42b99a0c43176f6ef747e965b61/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-05-28 00:42:27,349 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/20757563a49aa42b99a0c43176f6ef747e965b61 HTTP/1.1" 200 None 2024-05-28 00:42:27,763 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/20757563a49aa42b99a0c43176f6ef747e965b61?per_page=1 HTTP/1.1" 200 2 2024-05-28 00:42:27,764 [ scc.repo] DEBUG - PR 6 dominikl 'Add method to create masks grouped by label id' 2024-05-28 00:42:27,764 [ scc.repo] DEBUG ## Branches found: 2024-05-28 00:42:27,764 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois 2024-05-28 00:42:27,764 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:42:27,764 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:42:27,770 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-05-28 00:42:27,776 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-05-28 00:42:27,776 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-05-28 00:42:27,783 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-05-28 00:42:27,790 [ scc.git] DEBUG Already up to date. 2024-05-28 00:42:27,790 [ scc.git] DEBUG Calling 'git fetch origin pull/6/head' 2024-05-28 00:42:28,233 [ scc.git] DEBUG From https://github.com/ome/omero-rois 2024-05-28 00:42:28,233 [ scc.git] DEBUG * branch refs/pull/6/head -> FETCH_HEAD 2024-05-28 00:42:28,239 [ scc.git] DEBUG ## Unique users: [] 2024-05-28 00:42:28,239 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:42:28,239 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:42:28,245 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...20757563a49aa42b99a0c43176f6ef747e965b61' 2024-05-28 00:42:28,252 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:42:28,258 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 6 (Add method to create masks grouped by label id) 20757563a49aa42b99a0c43176f6ef747e965b61' 2024-05-28 00:42:28,270 [ scc.git] DEBUG Auto-merging src/omero_rois/library.py 2024-05-28 00:42:28,270 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-05-28 00:42:28,273 [ scc.git] DEBUG src/omero_rois/library.py | 33 +++++++++++++++++++++++++++++++++ 2024-05-28 00:42:28,274 [ scc.git] DEBUG 1 file changed, 33 insertions(+) 2024-05-28 00:42:28,434 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:42:28,435 [ scc.git] DEBUG Calling 'git submodule update' 2024-05-28 00:42:28,475 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:42:28,475 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:42:28,481 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-05-28 00:42:28,526 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-05-28 00:42:28,533 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f12243c3520> has no local changes 2024-05-28 00:42:28,533 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-rois Excluded PRs: - PR 28 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) Already up to date. Merged PRs: - PR 6 dominikl 'Add method to create masks grouped by label id' Generated by OMERO-plugins-push#79 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/)' 2024-05-28 00:42:28,541 [ scc.git] DEBUG [detached HEAD 862530d] merge master -Dorg -Ssuccess-only 2024-05-28 00:42:28,542 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:42:28,542 [ scc.repo] DEBUG ## PRs found: 2024-05-28 00:42:28,943 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None 2024-05-28 00:42:29,398 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None 2024-05-28 00:42:29,845 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None 2024-05-28 00:42:30,375 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None 2024-05-28 00:42:30,837 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-05-28 00:42:31,292 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None 2024-05-28 00:42:31,703 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2 2024-05-28 00:42:31,704 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)' 2024-05-28 00:42:31,704 [ scc.repo] DEBUG ## Branches found: 2024-05-28 00:42:31,704 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup 2024-05-28 00:42:31,704 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:42:31,705 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:42:31,711 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-05-28 00:42:31,717 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-05-28 00:42:31,717 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-05-28 00:42:31,724 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-05-28 00:42:31,730 [ scc.git] DEBUG Already up to date. 2024-05-28 00:42:31,731 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head' 2024-05-28 00:42:32,174 [ scc.git] DEBUG From https://github.com/ome/omero-signup 2024-05-28 00:42:32,174 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD 2024-05-28 00:42:32,179 [ scc.git] DEBUG ## Unique users: [] 2024-05-28 00:42:32,180 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:42:32,180 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:42:32,187 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d' 2024-05-28 00:42:32,201 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:42:32,207 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d' 2024-05-28 00:42:32,220 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py 2024-05-28 00:42:32,220 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py 2024-05-28 00:42:32,220 [ scc.git] DEBUG Auto-merging omero_signup/urls.py 2024-05-28 00:42:32,220 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py 2024-05-28 00:42:32,220 [ scc.git] DEBUG Auto-merging omero_signup/views.py 2024-05-28 00:42:32,220 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py 2024-05-28 00:42:32,221 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2024-05-28 00:42:32,221 [ scc.git] DEBUG Auto-merging setup.py 2024-05-28 00:42:32,221 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py 2024-05-28 00:42:32,221 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2024-05-28 00:42:32,228 [ scc.git] DEBUG Calling 'git reset --hard c8610dba25f39870a09fa5401c735fb3be85a319' 2024-05-28 00:42:32,235 [ scc.git] DEBUG HEAD is now at c8610db Bump version: 0.3.3 → 0.3.4.dev0 2024-05-28 00:42:32,395 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:42:32,396 [ scc.git] DEBUG Calling 'git merge-base c8610dba25f39870a09fa5401c735fb3be85a319 b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d' 2024-05-28 00:42:32,404 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..c8610dba25f39870a09fa5401c735fb3be85a319' 2024-05-28 00:42:32,417 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)' Conflicting PR. Removed from build [OMERO-plugins-push#79](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/consoleText) for more details. Possible conflicts: - Upstream changes - setup.py - omero_signup/views.py - omero_signup/signup_settings.py - omero_signup/urls.py --conflicts 2024-05-28 00:42:32,425 [ scc.config] DEBUG Found github.token 2024-05-28 00:42:32,425 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts. 2024-05-28 00:42:32,425 [ scc.git] DEBUG Calling 'git submodule update' 2024-05-28 00:42:32,467 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:42:32,467 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:42:32,473 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-05-28 00:42:32,514 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-05-28 00:42:32,521 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f12243c3670> has no local changes 2024-05-28 00:42:32,521 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-signup Already up to date. Conflicting PRs (not included): - PR 14 manics 'Add pre-commit (black, flake8)' Generated by OMERO-plugins-push#79 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/)' 2024-05-28 00:42:32,531 [ scc.git] DEBUG [detached HEAD d836703] merge master -Dorg -Ssuccess-only 2024-05-28 00:42:32,532 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:42:32,532 [ scc.repo] DEBUG ## PRs found: 2024-05-28 00:42:32,893 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None 2024-05-28 00:42:33,359 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12 HTTP/1.1" 200 None 2024-05-28 00:42:33,801 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12/comments HTTP/1.1" 200 None 2024-05-28 00:42:34,314 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None 2024-05-28 00:42:34,767 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-05-28 00:42:35,265 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None 2024-05-28 00:42:35,666 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/425319051224e8481afc40083fd9b5db4bc99928?per_page=1 HTTP/1.1" 200 2 2024-05-28 00:42:35,667 [ scc.repo] DEBUG - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra' 2024-05-28 00:42:35,667 [ scc.repo] DEBUG ## Branches found: 2024-05-28 00:42:35,667 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra 2024-05-28 00:42:35,667 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:42:35,667 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:42:35,674 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-05-28 00:42:35,681 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-05-28 00:42:35,682 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-05-28 00:42:35,690 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-05-28 00:42:35,699 [ scc.git] DEBUG Already up to date. 2024-05-28 00:42:35,699 [ scc.git] DEBUG Calling 'git fetch origin pull/12/head' 2024-05-28 00:42:36,235 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra 2024-05-28 00:42:36,235 [ scc.git] DEBUG * branch refs/pull/12/head -> FETCH_HEAD 2024-05-28 00:42:36,242 [ scc.git] DEBUG ## Unique users: [] 2024-05-28 00:42:36,243 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:42:36,243 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:42:36,252 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...425319051224e8481afc40083fd9b5db4bc99928' 2024-05-28 00:42:36,261 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:42:36,267 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 12 (IDR: use downloaded ansible templates & variables to configure infra) 425319051224e8481afc40083fd9b5db4bc99928' 2024-05-28 00:42:36,333 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2024-05-28 00:42:36,337 [ scc.git] DEBUG idr-compose.yml | 66 ++++++++++++++ 2024-05-28 00:42:36,337 [ scc.git] DEBUG idr-haproxy.yml | 58 +++++++++++++ 2024-05-28 00:42:36,337 [ scc.git] DEBUG idr/40-ansible.sh | 7 ++ 2024-05-28 00:42:36,337 [ scc.git] DEBUG idr/70-reset-password.sh | 1 + 2024-05-28 00:42:36,337 [ scc.git] DEBUG idr/nginx/conf.d/default.conf | 1 + 2024-05-28 00:42:36,337 [ scc.git] DEBUG idr/nginx/conf.d/example_ssl.conf | 1 + 2024-05-28 00:42:36,339 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cache.conf | 53 +++++++++++ 2024-05-28 00:42:36,340 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cachebuster.conf | 114 ++++++++++++++++++++++++ 2024-05-28 00:42:36,340 [ scc.git] DEBUG idr/nginx/conf.d/proxy-default.conf | 135 +++++++++++++++++++++++++++++ 2024-05-28 00:42:36,340 [ scc.git] DEBUG idr/nginx/conf.d/proxy-omeroreadwrite.conf | 115 ++++++++++++++++++++++++ 2024-05-28 00:42:36,340 [ scc.git] DEBUG idr/nginx/conf.d/proxy-redirect.conf | 15 ++++ 2024-05-28 00:42:36,340 [ scc.git] DEBUG idr/nginx/conf.d/proxy-upstream.conf | 13 +++ 2024-05-28 00:42:36,340 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v0.conf | 26 ++++++ 2024-05-28 00:42:36,340 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v1.conf | 30 +++++++ 2024-05-28 00:42:36,340 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v2.conf | 30 +++++++ 2024-05-28 00:42:36,340 [ scc.git] DEBUG idr/nginx/conf.d/proxy-websockets.conf | 6 ++ 2024-05-28 00:42:36,340 [ scc.git] DEBUG idr/nginx/nginx.conf | 53 +++++++++++ 2024-05-28 00:42:36,340 [ scc.git] DEBUG idr/omero/Dockerfile | 3 + 2024-05-28 00:42:36,340 [ scc.git] DEBUG idr/omero/playbook.yml | 41 +++++++++ 2024-05-28 00:42:36,340 [ scc.git] DEBUG idr/redirect/Dockerfile | 6 ++ 2024-05-28 00:42:36,340 [ scc.git] DEBUG idr/web/Dockerfile | 5 ++ 2024-05-28 00:42:36,340 [ scc.git] DEBUG idr/web/playbook.yml | 45 ++++++++++ 2024-05-28 00:42:36,340 [ scc.git] DEBUG 22 files changed, 824 insertions(+) 2024-05-28 00:42:36,340 [ scc.git] DEBUG create mode 100644 idr-compose.yml 2024-05-28 00:42:36,340 [ scc.git] DEBUG create mode 100644 idr-haproxy.yml 2024-05-28 00:42:36,340 [ scc.git] DEBUG create mode 100755 idr/40-ansible.sh 2024-05-28 00:42:36,340 [ scc.git] DEBUG create mode 100755 idr/70-reset-password.sh 2024-05-28 00:42:36,340 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/default.conf 2024-05-28 00:42:36,340 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/example_ssl.conf 2024-05-28 00:42:36,340 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cache.conf 2024-05-28 00:42:36,340 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cachebuster.conf 2024-05-28 00:42:36,340 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-default.conf 2024-05-28 00:42:36,340 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-omeroreadwrite.conf 2024-05-28 00:42:36,340 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-redirect.conf 2024-05-28 00:42:36,340 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-upstream.conf 2024-05-28 00:42:36,340 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v0.conf 2024-05-28 00:42:36,341 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v1.conf 2024-05-28 00:42:36,341 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v2.conf 2024-05-28 00:42:36,341 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-websockets.conf 2024-05-28 00:42:36,341 [ scc.git] DEBUG create mode 100644 idr/nginx/nginx.conf 2024-05-28 00:42:36,341 [ scc.git] DEBUG create mode 100644 idr/omero/Dockerfile 2024-05-28 00:42:36,341 [ scc.git] DEBUG create mode 100644 idr/omero/playbook.yml 2024-05-28 00:42:36,341 [ scc.git] DEBUG create mode 100644 idr/redirect/Dockerfile 2024-05-28 00:42:36,341 [ scc.git] DEBUG create mode 100644 idr/web/Dockerfile 2024-05-28 00:42:36,341 [ scc.git] DEBUG create mode 100644 idr/web/playbook.yml 2024-05-28 00:42:36,494 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:42:36,495 [ scc.git] DEBUG Calling 'git submodule update' 2024-05-28 00:42:36,538 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:42:36,538 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:42:36,545 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-05-28 00:42:36,584 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-05-28 00:42:36,592 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f12243c3580> has no local changes 2024-05-28 00:42:36,592 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: openmicroscopy/omero-test-infra Already up to date. Merged PRs: - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra' Generated by OMERO-plugins-push#79 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/)' 2024-05-28 00:42:36,603 [ scc.git] DEBUG [detached HEAD 5997060] merge master -Dorg -Ssuccess-only 2024-05-28 00:42:36,603 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:42:36,604 [ scc.repo] DEBUG ## PRs found: 2024-05-28 00:42:36,918 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 2 2024-05-28 00:42:36,919 [ scc.repo] DEBUG ## Branches found: 2024-05-28 00:42:36,920 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload 2024-05-28 00:42:36,920 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:42:36,920 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:42:36,930 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-05-28 00:42:36,939 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-05-28 00:42:36,940 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-05-28 00:42:36,948 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-05-28 00:42:36,958 [ scc.git] DEBUG Already up to date. 2024-05-28 00:42:36,958 [ scc.git] DEBUG ## Unique users: [] 2024-05-28 00:42:36,958 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:42:36,958 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:42:36,965 [ scc.git] DEBUG Calling 'git submodule update' 2024-05-28 00:42:37,010 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:42:37,010 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:42:37,016 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-05-28 00:42:37,058 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-05-28 00:42:37,064 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f12243fdd60> has no local changes 2024-05-28 00:42:37,065 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-upload Already up to date. Generated by OMERO-plugins-push#79 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/)' 2024-05-28 00:42:37,074 [ scc.git] DEBUG [detached HEAD c1ec584] merge master -Dorg -Ssuccess-only 2024-05-28 00:42:37,074 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:42:37,074 [ scc.repo] DEBUG ## PRs found: 2024-05-28 00:42:37,341 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 2 2024-05-28 00:42:37,342 [ scc.repo] DEBUG ## Branches found: 2024-05-28 00:42:37,342 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope 2024-05-28 00:42:37,342 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:42:37,342 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:42:37,348 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-05-28 00:42:37,352 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-05-28 00:42:37,353 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-05-28 00:42:37,359 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-05-28 00:42:37,365 [ scc.git] DEBUG Already up to date. 2024-05-28 00:42:37,365 [ scc.git] DEBUG ## Unique users: [] 2024-05-28 00:42:37,365 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:42:37,366 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:42:37,371 [ scc.git] DEBUG Calling 'git submodule update' 2024-05-28 00:42:37,411 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:42:37,411 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:42:37,417 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-05-28 00:42:37,465 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-05-28 00:42:37,471 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f12243d4bb0> has no local changes 2024-05-28 00:42:37,472 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-virtual-microscope Already up to date. Generated by OMERO-plugins-push#79 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/)' 2024-05-28 00:42:37,487 [ scc.git] DEBUG [detached HEAD 397fcc3] merge master -Dorg -Ssuccess-only 2024-05-28 00:42:37,487 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:42:37,488 [ scc.git] INFO Overriding base-branch from master to main 2024-05-28 00:42:37,488 [ scc.repo] DEBUG ## PRs found: 2024-05-28 00:42:37,848 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None 2024-05-28 00:42:38,300 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None 2024-05-28 00:42:38,785 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None 2024-05-28 00:42:39,251 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None 2024-05-28 00:42:39,743 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None 2024-05-28 00:42:40,228 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-05-28 00:42:40,713 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368 HTTP/1.1" 200 None 2024-05-28 00:42:41,214 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None 2024-05-28 00:42:41,618 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2 2024-05-28 00:42:41,619 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' 2024-05-28 00:42:41,620 [ scc.repo] DEBUG ## Branches found: 2024-05-28 00:42:41,620 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr 2024-05-28 00:42:41,620 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:42:41,620 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:42:41,626 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main' 2024-05-28 00:42:41,631 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-05-28 00:42:41,631 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main' 2024-05-28 00:42:41,637 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main' 2024-05-28 00:42:41,643 [ scc.git] DEBUG Already up to date. 2024-05-28 00:42:41,643 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head' 2024-05-28 00:42:42,008 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr 2024-05-28 00:42:42,008 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD 2024-05-28 00:42:42,013 [ scc.git] DEBUG ## Unique users: [] 2024-05-28 00:42:42,013 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:42:42,013 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:42:42,021 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8' 2024-05-28 00:42:42,026 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:42:42,032 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8' 2024-05-28 00:42:42,043 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py 2024-05-28 00:42:42,043 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py 2024-05-28 00:42:42,043 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2024-05-28 00:42:42,043 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2024-05-28 00:42:42,050 [ scc.git] DEBUG Calling 'git reset --hard 67bb245b8b08709e04a8bf52b02de2298a029a94' 2024-05-28 00:42:42,056 [ scc.git] DEBUG HEAD is now at 67bb245 Bump version: 0.1.1 → 0.1.2.dev0 2024-05-28 00:42:42,214 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:42:42,215 [ scc.git] DEBUG Calling 'git merge-base 67bb245b8b08709e04a8bf52b02de2298a029a94 85cf4c893f393da6763bf4cee2a308832a41a9e8' 2024-05-28 00:42:42,223 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..67bb245b8b08709e04a8bf52b02de2298a029a94' 2024-05-28 00:42:42,230 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' Conflicting PR. Removed from build [OMERO-plugins-push#79](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/consoleText) for more details. Possible conflicts: - Upstream changes - omero_web_zarr/urls.py --conflicts 2024-05-28 00:42:42,237 [ scc.config] DEBUG Found github.token 2024-05-28 00:42:42,237 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts. 2024-05-28 00:42:42,237 [ scc.git] DEBUG Calling 'git submodule update' 2024-05-28 00:42:42,280 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:42:42,281 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:42:42,288 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-05-28 00:42:42,328 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-05-28 00:42:42,336 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f1224cb3b80> has no local changes 2024-05-28 00:42:42,336 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-web-zarr Excluded PRs: - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft) Already up to date. Conflicting PRs (not included): - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' Generated by OMERO-plugins-push#79 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/)' 2024-05-28 00:42:42,345 [ scc.git] DEBUG [detached HEAD 7ef4544] merge master -Dorg -Ssuccess-only 2024-05-28 00:42:42,346 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:42:42,346 [ scc.repo] DEBUG ## PRs found: 2024-05-28 00:42:42,652 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 2 2024-05-28 00:42:42,654 [ scc.repo] DEBUG ## Branches found: 2024-05-28 00:42:42,654 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror 2024-05-28 00:42:42,655 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:42:42,655 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:42:42,664 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-05-28 00:42:42,669 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-05-28 00:42:42,669 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-05-28 00:42:42,675 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-05-28 00:42:42,681 [ scc.git] DEBUG Already up to date. 2024-05-28 00:42:42,682 [ scc.git] DEBUG ## Unique users: [] 2024-05-28 00:42:42,682 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:42:42,682 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:42:42,687 [ scc.git] DEBUG Calling 'git submodule update' 2024-05-28 00:42:42,727 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:42:42,728 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:42:42,733 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-05-28 00:42:42,782 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-05-28 00:42:42,792 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f12243c7e50> has no local changes 2024-05-28 00:42:42,793 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: openmicroscopy/omero-weberror Already up to date. Generated by OMERO-plugins-push#79 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/)' 2024-05-28 00:42:42,803 [ scc.git] DEBUG [detached HEAD c3ddb73] merge master -Dorg -Ssuccess-only 2024-05-28 00:42:42,804 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:42:42,804 [ scc.repo] DEBUG ## PRs found: 2024-05-28 00:42:43,071 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 2 2024-05-28 00:42:43,073 [ scc.repo] DEBUG ## Branches found: 2024-05-28 00:42:43,073 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest 2024-05-28 00:42:43,073 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:42:43,073 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:42:43,080 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-05-28 00:42:43,087 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-05-28 00:42:43,088 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-05-28 00:42:43,095 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-05-28 00:42:43,103 [ scc.git] DEBUG Already up to date. 2024-05-28 00:42:43,103 [ scc.git] DEBUG ## Unique users: [] 2024-05-28 00:42:43,103 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:42:43,103 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:42:43,110 [ scc.git] DEBUG Calling 'git submodule update' 2024-05-28 00:42:43,156 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:42:43,156 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:42:43,163 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-05-28 00:42:43,210 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-05-28 00:42:43,218 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f122433e490> has no local changes 2024-05-28 00:42:43,218 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: openmicroscopy/omero-webtest Already up to date. Generated by OMERO-plugins-push#79 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/)' 2024-05-28 00:42:43,228 [ scc.git] DEBUG [detached HEAD c00ffc5] merge master -Dorg -Ssuccess-only 2024-05-28 00:42:43,229 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:42:43,229 [ scc.repo] DEBUG ## PRs found: 2024-05-28 00:42:43,561 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 None 2024-05-28 00:42:44,075 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100 HTTP/1.1" 200 None 2024-05-28 00:42:44,527 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100/comments HTTP/1.1" 200 None 2024-05-28 00:42:45,009 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None 2024-05-28 00:42:45,479 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-05-28 00:42:45,959 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None 2024-05-28 00:42:46,368 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/statuses/b4abacf0cb9b7aee150761d320bdbb80762cd6e7?per_page=1 HTTP/1.1" 200 2 2024-05-28 00:42:46,369 [ scc.repo] DEBUG - PR 100 dominikl 'Run tests properly' 2024-05-28 00:42:46,369 [ scc.repo] DEBUG ## Branches found: 2024-05-28 00:42:46,369 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway 2024-05-28 00:42:46,369 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:42:46,369 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:42:46,375 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2024-05-28 00:42:46,380 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-05-28 00:42:46,380 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2024-05-28 00:42:46,386 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2024-05-28 00:42:46,391 [ scc.git] DEBUG Already up to date. 2024-05-28 00:42:46,392 [ scc.git] DEBUG Calling 'git fetch origin pull/100/head' 2024-05-28 00:42:46,771 [ scc.git] DEBUG From https://github.com/ome/rOMERO-gateway 2024-05-28 00:42:46,771 [ scc.git] DEBUG * branch refs/pull/100/head -> FETCH_HEAD 2024-05-28 00:42:46,777 [ scc.git] DEBUG ## Unique users: [] 2024-05-28 00:42:46,777 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:42:46,778 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:42:46,785 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b4abacf0cb9b7aee150761d320bdbb80762cd6e7' 2024-05-28 00:42:46,795 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:42:46,807 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 100 (Run tests properly) b4abacf0cb9b7aee150761d320bdbb80762cd6e7' 2024-05-28 00:42:46,821 [ scc.git] DEBUG Auto-merging Dockerfile 2024-05-28 00:42:46,822 [ scc.git] DEBUG CONFLICT (content): Merge conflict in Dockerfile 2024-05-28 00:42:46,822 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2024-05-28 00:42:46,822 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2024-05-28 00:42:46,831 [ scc.git] DEBUG Calling 'git reset --hard 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9' 2024-05-28 00:42:46,839 [ scc.git] DEBUG HEAD is now at 7b5d64d Merge pull request #106 from dominikl/add_examples_2 2024-05-28 00:42:46,992 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:42:46,994 [ scc.git] DEBUG Calling 'git merge-base 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 b4abacf0cb9b7aee150761d320bdbb80762cd6e7' 2024-05-28 00:42:47,001 [ scc.git] DEBUG Calling 'git diff --name-only 8b424d2d21f70d07729c4da38a9241b9a9f483be..7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9' 2024-05-28 00:42:47,007 [ scc.git] INFO - PR 100 dominikl 'Run tests properly' Conflicting PR. Removed from build [OMERO-plugins-push#79](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/consoleText) for more details. Possible conflicts: - Upstream changes - Dockerfile --conflicts 2024-05-28 00:42:47,013 [ scc.config] DEBUG Found github.token 2024-05-28 00:42:47,013 [ scc.git] DEBUG Not adding comment to issue #100, already --conflicts. 2024-05-28 00:42:47,014 [ scc.git] DEBUG Calling 'git submodule update' 2024-05-28 00:42:47,057 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:42:47,057 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:42:47,063 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-05-28 00:42:47,106 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-05-28 00:42:47,113 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f1224383be0> has no local changes 2024-05-28 00:42:47,114 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/rOMERO-gateway Already up to date. Conflicting PRs (not included): - PR 100 dominikl 'Run tests properly' Generated by OMERO-plugins-push#79 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/)' 2024-05-28 00:42:47,125 [ scc.git] DEBUG [detached HEAD 314ff13] merge master -Dorg -Ssuccess-only 2024-05-28 00:42:47,125 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:42:47,126 [ scc.git] INFO Overriding base-branch from master to develop 2024-05-28 00:42:47,126 [ scc.repo] DEBUG ## PRs found: 2024-05-28 00:42:47,630 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None 2024-05-28 00:42:48,093 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/216 HTTP/1.1" 200 None 2024-05-28 00:42:48,559 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/216/comments HTTP/1.1" 200 None 2024-05-28 00:42:49,013 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/206 HTTP/1.1" 200 None 2024-05-28 00:42:49,467 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/206/comments HTTP/1.1" 200 None 2024-05-28 00:42:49,922 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202 HTTP/1.1" 200 None 2024-05-28 00:42:50,365 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202/comments HTTP/1.1" 200 None 2024-05-28 00:42:50,805 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None 2024-05-28 00:42:51,220 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2024-05-28 00:42:51,703 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None 2024-05-28 00:42:52,113 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/1fd6030669613cdb8879cfe6395db8c820fdcf19?per_page=1 HTTP/1.1" 200 2 2024-05-28 00:42:52,114 [ scc.repo] DEBUG - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py' 2024-05-28 00:42:52,576 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None 2024-05-28 00:42:53,066 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None 2024-05-28 00:42:53,517 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103 HTTP/1.1" 200 None 2024-05-28 00:42:54,017 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103/comments HTTP/1.1" 200 None 2024-05-28 00:42:54,023 [ scc.repo] DEBUG ## Branches found: 2024-05-28 00:42:54,023 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts 2024-05-28 00:42:54,023 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:42:54,023 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:42:54,033 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop' 2024-05-28 00:42:54,044 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2024-05-28 00:42:54,044 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop' 2024-05-28 00:42:54,054 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop' 2024-05-28 00:42:54,065 [ scc.git] DEBUG Already up to date. 2024-05-28 00:42:54,065 [ scc.git] DEBUG Calling 'git fetch origin pull/202/head' 2024-05-28 00:42:54,477 [ scc.git] DEBUG From https://github.com/ome/scripts 2024-05-28 00:42:54,478 [ scc.git] DEBUG * branch refs/pull/202/head -> FETCH_HEAD 2024-05-28 00:42:54,484 [ scc.git] DEBUG ## Unique users: [] 2024-05-28 00:42:54,484 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:42:54,484 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:42:54,493 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1fd6030669613cdb8879cfe6395db8c820fdcf19' 2024-05-28 00:42:54,505 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:42:54,513 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 202 (Add Plate support to KeyVal_to_csv.py) 1fd6030669613cdb8879cfe6395db8c820fdcf19' 2024-05-28 00:42:54,591 [ scc.git] DEBUG Auto-merging omero/annotation_scripts/KeyVal_to_csv.py 2024-05-28 00:42:54,591 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero/annotation_scripts/KeyVal_to_csv.py 2024-05-28 00:42:54,592 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2024-05-28 00:42:54,592 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2024-05-28 00:42:54,599 [ scc.git] DEBUG Calling 'git reset --hard 5a908933161233015332dd416c325c60c5b8bd3a' 2024-05-28 00:42:54,607 [ scc.git] DEBUG HEAD is now at 5a90893 Bump version: 5.8.2 → 5.8.3.dev0 2024-05-28 00:42:54,765 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:42:54,766 [ scc.git] DEBUG Calling 'git merge-base 5a908933161233015332dd416c325c60c5b8bd3a 1fd6030669613cdb8879cfe6395db8c820fdcf19' 2024-05-28 00:42:54,775 [ scc.git] DEBUG Calling 'git diff --name-only a90f59802f6752ad74badec5c0c1d6b0c9c43b15..5a908933161233015332dd416c325c60c5b8bd3a' 2024-05-28 00:42:54,781 [ scc.git] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py' Conflicting PR. Removed from build [OMERO-plugins-push#79](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/consoleText) for more details. Possible conflicts: - Upstream changes - omero/annotation_scripts/KeyVal_to_csv.py --conflicts 2024-05-28 00:42:54,787 [ scc.config] DEBUG Found github.token 2024-05-28 00:42:54,787 [ scc.git] DEBUG Not adding comment to issue #202, already --conflicts. 2024-05-28 00:42:54,787 [ scc.git] DEBUG Calling 'git submodule update' 2024-05-28 00:42:54,830 [ scc.git] DEBUG Get sha1 of %s 2024-05-28 00:42:54,830 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2024-05-28 00:42:54,837 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-05-28 00:42:54,879 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-05-28 00:42:54,887 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f12243b2d30> has no local changes 2024-05-28 00:42:54,887 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/scripts Excluded PRs: - PR 216 Tom-TBT 'Key-value pair scripts enhancement' (user: Tom-TBT) - PR 206 Rdornier 'Adding a script that saves data owner as key-value pair' (user: Rdornier) - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn) - PR 103 joshmoore 'Script for calculating min/max' (exclude comment) Already up to date. Conflicting PRs (not included): - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py' Generated by OMERO-plugins-push#79 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/)' 2024-05-28 00:42:54,899 [ scc.git] DEBUG [detached HEAD c3b6a27] merge master -Dorg -Ssuccess-only 2024-05-28 00:42:54,899 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:42:54,899 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2024-05-28 00:42:55,016 [ scc.config] DEBUG Found submodule.minimal-omero-client.url 2024-05-28 00:42:55,171 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:42:55,188 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch 2024-05-28 00:42:55,193 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url 2024-05-28 00:42:55,574 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:42:55,587 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch 2024-05-28 00:42:55,596 [ scc.config] DEBUG Found submodule.omero-cli-render.url 2024-05-28 00:42:55,993 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:42:56,014 [ scc.config] DEBUG Found submodule.omero-cli-render.branch 2024-05-28 00:42:56,020 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url 2024-05-28 00:42:56,414 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:42:56,435 [ scc.config] DEBUG Found submodule.omero-figure.url 2024-05-28 00:42:56,825 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:42:56,836 [ scc.config] DEBUG Found submodule.omero-figure.branch 2024-05-28 00:42:56,842 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url 2024-05-28 00:42:57,226 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:42:57,241 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch 2024-05-28 00:42:57,249 [ scc.config] DEBUG Found submodule.omero-gallery.url 2024-05-28 00:42:57,634 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:42:57,651 [ scc.config] DEBUG Found submodule.omero-gallery.branch 2024-05-28 00:42:57,657 [ scc.config] DEBUG Found submodule.omero-iviewer.url 2024-05-28 00:42:58,050 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:42:58,067 [ scc.config] DEBUG Found submodule.omero-iviewer.branch 2024-05-28 00:42:58,076 [ scc.config] DEBUG Found submodule.omero-mapr.url 2024-05-28 00:42:58,451 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:42:58,469 [ scc.config] DEBUG Found submodule.omero-mapr.branch 2024-05-28 00:42:58,479 [ scc.config] DEBUG Found submodule.omero-metadata.url 2024-05-28 00:42:58,853 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:42:58,871 [ scc.config] DEBUG Found submodule.omero-metadata.branch 2024-05-28 00:42:58,879 [ scc.config] DEBUG Found submodule.omero-parade.url 2024-05-28 00:42:59,267 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:42:59,283 [ scc.config] DEBUG Found submodule.omero-parade.branch 2024-05-28 00:42:59,289 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url 2024-05-28 00:42:59,673 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:42:59,690 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch 2024-05-28 00:42:59,698 [ scc.config] DEBUG Found submodule.omero-rois.url 2024-05-28 00:43:00,081 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:43:00,098 [ scc.config] DEBUG Found submodule.omero-signup.url 2024-05-28 00:43:00,498 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:43:00,515 [ scc.config] DEBUG Found submodule.omero-test-infra.url 2024-05-28 00:43:00,915 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:43:00,940 [ scc.config] DEBUG Found submodule.omero-test-infra.branch 2024-05-28 00:43:00,949 [ scc.config] DEBUG Found submodule.omero-upload.url 2024-05-28 00:43:01,323 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:43:01,342 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url 2024-05-28 00:43:01,728 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:43:01,743 [ scc.config] DEBUG Found submodule.omero-web-zarr.url 2024-05-28 00:43:02,149 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:43:02,161 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch 2024-05-28 00:43:02,166 [ scc.config] DEBUG Found submodule.omero-weberror.url 2024-05-28 00:43:02,557 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:43:02,569 [ scc.config] DEBUG Found submodule.omero-weberror.branch 2024-05-28 00:43:02,574 [ scc.config] DEBUG Found submodule.omero-webtest.url 2024-05-28 00:43:02,963 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:43:02,974 [ scc.config] DEBUG Found submodule.omero-webtest.branch 2024-05-28 00:43:02,979 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url 2024-05-28 00:43:03,373 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:43:03,384 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch 2024-05-28 00:43:03,388 [ scc.config] DEBUG Found submodule.scripts.url 2024-05-28 00:43:03,786 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2024-05-28 00:43:03,802 [ scc.config] DEBUG Found submodule.scripts.branch 2024-05-28 00:43:03,803 [ scc.git] DEBUG Calling 'git status --porcelain' 2024-05-28 00:43:03,904 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f1225ddd2e0> has local changes 2024-05-28 00:43:03,905 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-plugins Already up to date. Repository: ome/minimal-omero-client Already up to date. Repository: ome/omero-cli-duplicate Excluded PRs: - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment) Already up to date. Merged PRs: - PR 25 jburel 'review message' Repository: ome/omero-cli-render Excluded PRs: - PR 62 dominikl 'Add export and impo(rt) commands' (stage: draft) - PR 54 dominikl 'Change rendering settings spec' (stage: draft) - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft) - PR 48 dominikl 'Don't start rendering engine to get settings' (stage: draft) Already up to date. Merged PRs: - PR 59 will-moore 'Apply settings to Plate' Repository: ome/omero-cli-zarr Excluded PRs: - PR 161 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) - PR 118 sbesson 'Allow to use bioformats2raw to export HCS data' (stage: draft) Already up to date. Merged PRs: - PR 147 will-moore 'Name option' Conflicting PRs (not included): - PR 102 will-moore 'Zarr export tests' - PR 123 will-moore 'Support export of Fileset:ID' Repository: ome/omero-figure Excluded PRs: - PR 543 will-moore 'Plate well labels' (stage: draft) Already up to date. Merged PRs: - PR 549 will-moore 'Inset feature' - PR 555 will-moore 'Points in shape editor' - PR 560 will-moore 'Max projection bytes' - PR 562 will-moore 'Add changelog 7.0.0' Repository: ome/omero-fpbioimage Already up to date. Merged PRs: - PR 18 jburel 'default size z value' Repository: ome/omero-gallery Already up to date. Merged PRs: - PR 111 dependabot[bot] 'Bump semver from 5.7.0 to 5.7.2' Repository: ome/omero-iviewer Excluded PRs: - PR 420 will-moore 'Add release process to README' (exclude comment) - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment) Already up to date. Merged PRs: - PR 460 will-moore 'Channel min spinner fix' - PR 465 will-moore 'Save as Figure' - PR 471 will-moore 'Z projection disabled tooltip' Repository: ome/omero-mapr Excluded PRs: - PR 79 will-moore 'Right panel title' (exclude comment) Already up to date. Merged PRs: - PR 74 will-moore 'mapr extension of webclient' Repository: ome/omero-metadata Already up to date. Conflicting PRs (not included): - PR 55 kkoz 'Prevent users from creating columns with python keyword names' - PR 64 will-moore 'Support images_by_name for Screen and Plate' Repository: ome/omero-parade Excluded PRs: - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment) - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment) - PR 39 chris-allan 'Expand all for Screens' (exclude comment) Already up to date. Merged PRs: - PR 128 dependabot[bot] 'Bump postcss from 8.4.21 to 8.4.31' - PR 129 dependabot[bot] 'Bump @babel/traverse from 7.21.4 to 7.23.2' - PR 131 dependabot[bot] 'Bump axios from 1.3.5 to 1.6.0' Repository: ome/omero-prometheus-tools Already up to date. Merged PRs: - PR 14 jburel 'use conda-forge channel' Repository: ome/omero-rois Excluded PRs: - PR 28 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) Already up to date. Merged PRs: - PR 6 dominikl 'Add method to create masks grouped by label id' Repository: ome/omero-signup Already up to date. Conflicting PRs (not included): - PR 14 manics 'Add pre-commit (black, flake8)' Repository: openmicroscopy/omero-test-infra Already up to date. Merged PRs: - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra' Repository: ome/omero-upload Already up to date. Repository: ome/omero-virtual-microscope Already up to date. Repository: ome/omero-web-zarr Excluded PRs: - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft) Already up to date. Conflicting PRs (not included): - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' Repository: openmicroscopy/omero-weberror Already up to date. Repository: openmicroscopy/omero-webtest Already up to date. Repository: ome/rOMERO-gateway Already up to date. Conflicting PRs (not included): - PR 100 dominikl 'Run tests properly' Repository: ome/scripts Excluded PRs: - PR 216 Tom-TBT 'Key-value pair scripts enhancement' (user: Tom-TBT) - PR 206 Rdornier 'Adding a script that saves data owner as key-value pair' (user: Rdornier) - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn) - PR 103 joshmoore 'Script for calculating min/max' (exclude comment) Already up to date. Conflicting PRs (not included): - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py' Generated by OMERO-plugins-push#79 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/79/)' 2024-05-28 00:43:03,922 [ scc.git] DEBUG [detached HEAD 4bc3ec1] merge master -Dorg -Ssuccess-only 2024-05-28 00:43:03,922 [ scc.merge] INFO Repository: ome/omero-plugins 2024-05-28 00:43:03,922 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-) 2024-05-28 00:43:03,922 [ scc.merge] INFO Already up to date. 2024-05-28 00:43:03,922 [ scc.merge] INFO 2024-05-28 00:43:03,922 [ scc.merge] INFO 2024-05-28 00:43:03,922 [ scc.merge] INFO Repository: ome/minimal-omero-client 2024-05-28 00:43:03,922 [ scc.merge] INFO Already up to date. 2024-05-28 00:43:03,922 [ scc.merge] INFO 2024-05-28 00:43:03,922 [ scc.merge] INFO 2024-05-28 00:43:03,922 [ scc.merge] INFO Repository: ome/omero-cli-duplicate 2024-05-28 00:43:03,922 [ scc.merge] INFO Excluded PRs: 2024-05-28 00:43:03,922 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment) 2024-05-28 00:43:03,923 [ scc.merge] INFO Already up to date. 2024-05-28 00:43:03,923 [ scc.merge] INFO 2024-05-28 00:43:03,923 [ scc.merge] INFO Merged PRs: 2024-05-28 00:43:03,923 [ scc.merge] INFO - PR 25 jburel 'review message' 2024-05-28 00:43:03,923 [ scc.merge] INFO 2024-05-28 00:43:03,923 [ scc.merge] INFO Repository: ome/omero-cli-render 2024-05-28 00:43:03,923 [ scc.merge] INFO Excluded PRs: 2024-05-28 00:43:03,923 [ scc.merge] INFO - PR 62 dominikl 'Add export and impo(rt) commands' (stage: draft) 2024-05-28 00:43:03,923 [ scc.merge] INFO - PR 54 dominikl 'Change rendering settings spec' (stage: draft) 2024-05-28 00:43:03,923 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft) 2024-05-28 00:43:03,923 [ scc.merge] INFO - PR 48 dominikl 'Don't start rendering engine to get settings' (stage: draft) 2024-05-28 00:43:03,923 [ scc.merge] INFO Already up to date. 2024-05-28 00:43:03,923 [ scc.merge] INFO 2024-05-28 00:43:03,923 [ scc.merge] INFO Merged PRs: 2024-05-28 00:43:03,923 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate' 2024-05-28 00:43:03,923 [ scc.merge] INFO 2024-05-28 00:43:03,923 [ scc.merge] INFO Repository: ome/omero-cli-zarr 2024-05-28 00:43:03,923 [ scc.merge] INFO Excluded PRs: 2024-05-28 00:43:03,923 [ scc.merge] INFO - PR 161 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) 2024-05-28 00:43:03,923 [ scc.merge] INFO - PR 118 sbesson 'Allow to use bioformats2raw to export HCS data' (stage: draft) 2024-05-28 00:43:03,923 [ scc.merge] INFO Already up to date. 2024-05-28 00:43:03,923 [ scc.merge] INFO 2024-05-28 00:43:03,923 [ scc.merge] INFO Merged PRs: 2024-05-28 00:43:03,923 [ scc.merge] INFO - PR 147 will-moore 'Name option' 2024-05-28 00:43:03,923 [ scc.merge] INFO 2024-05-28 00:43:03,923 [ scc.merge] INFO Conflicting PRs (not included): 2024-05-28 00:43:03,923 [ scc.merge] INFO - PR 102 will-moore 'Zarr export tests' 2024-05-28 00:43:03,923 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' 2024-05-28 00:43:03,923 [ scc.merge] INFO 2024-05-28 00:43:03,923 [ scc.merge] INFO Repository: ome/omero-figure 2024-05-28 00:43:03,923 [ scc.merge] INFO Excluded PRs: 2024-05-28 00:43:03,923 [ scc.merge] INFO - PR 543 will-moore 'Plate well labels' (stage: draft) 2024-05-28 00:43:03,924 [ scc.merge] INFO Already up to date. 2024-05-28 00:43:03,924 [ scc.merge] INFO 2024-05-28 00:43:03,924 [ scc.merge] INFO Merged PRs: 2024-05-28 00:43:03,924 [ scc.merge] INFO - PR 549 will-moore 'Inset feature' 2024-05-28 00:43:03,924 [ scc.merge] INFO - PR 555 will-moore 'Points in shape editor' 2024-05-28 00:43:03,924 [ scc.merge] INFO - PR 560 will-moore 'Max projection bytes' 2024-05-28 00:43:03,924 [ scc.merge] INFO - PR 562 will-moore 'Add changelog 7.0.0' 2024-05-28 00:43:03,924 [ scc.merge] INFO 2024-05-28 00:43:03,924 [ scc.merge] INFO Repository: ome/omero-fpbioimage 2024-05-28 00:43:03,924 [ scc.merge] INFO Already up to date. 2024-05-28 00:43:03,924 [ scc.merge] INFO 2024-05-28 00:43:03,924 [ scc.merge] INFO Merged PRs: 2024-05-28 00:43:03,924 [ scc.merge] INFO - PR 18 jburel 'default size z value' 2024-05-28 00:43:03,924 [ scc.merge] INFO 2024-05-28 00:43:03,924 [ scc.merge] INFO Repository: ome/omero-gallery 2024-05-28 00:43:03,924 [ scc.merge] INFO Already up to date. 2024-05-28 00:43:03,924 [ scc.merge] INFO 2024-05-28 00:43:03,924 [ scc.merge] INFO Merged PRs: 2024-05-28 00:43:03,924 [ scc.merge] INFO - PR 111 dependabot[bot] 'Bump semver from 5.7.0 to 5.7.2' 2024-05-28 00:43:03,924 [ scc.merge] INFO 2024-05-28 00:43:03,924 [ scc.merge] INFO Repository: ome/omero-iviewer 2024-05-28 00:43:03,924 [ scc.merge] INFO Excluded PRs: 2024-05-28 00:43:03,924 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment) 2024-05-28 00:43:03,924 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment) 2024-05-28 00:43:03,924 [ scc.merge] INFO Already up to date. 2024-05-28 00:43:03,924 [ scc.merge] INFO 2024-05-28 00:43:03,924 [ scc.merge] INFO Merged PRs: 2024-05-28 00:43:03,924 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix' 2024-05-28 00:43:03,924 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure' 2024-05-28 00:43:03,924 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip' 2024-05-28 00:43:03,924 [ scc.merge] INFO 2024-05-28 00:43:03,924 [ scc.merge] INFO Repository: ome/omero-mapr 2024-05-28 00:43:03,924 [ scc.merge] INFO Excluded PRs: 2024-05-28 00:43:03,924 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment) 2024-05-28 00:43:03,924 [ scc.merge] INFO Already up to date. 2024-05-28 00:43:03,925 [ scc.merge] INFO 2024-05-28 00:43:03,925 [ scc.merge] INFO Merged PRs: 2024-05-28 00:43:03,925 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient' 2024-05-28 00:43:03,925 [ scc.merge] INFO 2024-05-28 00:43:03,925 [ scc.merge] INFO Repository: ome/omero-metadata 2024-05-28 00:43:03,925 [ scc.merge] INFO Already up to date. 2024-05-28 00:43:03,925 [ scc.merge] INFO 2024-05-28 00:43:03,925 [ scc.merge] INFO Conflicting PRs (not included): 2024-05-28 00:43:03,925 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names' 2024-05-28 00:43:03,925 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate' 2024-05-28 00:43:03,925 [ scc.merge] INFO 2024-05-28 00:43:03,925 [ scc.merge] INFO Repository: ome/omero-parade 2024-05-28 00:43:03,925 [ scc.merge] INFO Excluded PRs: 2024-05-28 00:43:03,925 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment) 2024-05-28 00:43:03,925 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment) 2024-05-28 00:43:03,925 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment) 2024-05-28 00:43:03,925 [ scc.merge] INFO Already up to date. 2024-05-28 00:43:03,925 [ scc.merge] INFO 2024-05-28 00:43:03,926 [ scc.merge] INFO Merged PRs: 2024-05-28 00:43:03,926 [ scc.merge] INFO - PR 128 dependabot[bot] 'Bump postcss from 8.4.21 to 8.4.31' 2024-05-28 00:43:03,926 [ scc.merge] INFO - PR 129 dependabot[bot] 'Bump @babel/traverse from 7.21.4 to 7.23.2' 2024-05-28 00:43:03,926 [ scc.merge] INFO - PR 131 dependabot[bot] 'Bump axios from 1.3.5 to 1.6.0' 2024-05-28 00:43:03,926 [ scc.merge] INFO 2024-05-28 00:43:03,926 [ scc.merge] INFO Repository: ome/omero-prometheus-tools 2024-05-28 00:43:03,926 [ scc.merge] INFO Already up to date. 2024-05-28 00:43:03,926 [ scc.merge] INFO 2024-05-28 00:43:03,926 [ scc.merge] INFO Merged PRs: 2024-05-28 00:43:03,926 [ scc.merge] INFO - PR 14 jburel 'use conda-forge channel' 2024-05-28 00:43:03,926 [ scc.merge] INFO 2024-05-28 00:43:03,926 [ scc.merge] INFO Repository: ome/omero-rois 2024-05-28 00:43:03,926 [ scc.merge] INFO Excluded PRs: 2024-05-28 00:43:03,926 [ scc.merge] INFO - PR 28 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) 2024-05-28 00:43:03,926 [ scc.merge] INFO Already up to date. 2024-05-28 00:43:03,926 [ scc.merge] INFO 2024-05-28 00:43:03,926 [ scc.merge] INFO Merged PRs: 2024-05-28 00:43:03,926 [ scc.merge] INFO - PR 6 dominikl 'Add method to create masks grouped by label id' 2024-05-28 00:43:03,926 [ scc.merge] INFO 2024-05-28 00:43:03,926 [ scc.merge] INFO Repository: ome/omero-signup 2024-05-28 00:43:03,926 [ scc.merge] INFO Already up to date. 2024-05-28 00:43:03,926 [ scc.merge] INFO 2024-05-28 00:43:03,926 [ scc.merge] INFO Conflicting PRs (not included): 2024-05-28 00:43:03,926 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)' 2024-05-28 00:43:03,926 [ scc.merge] INFO 2024-05-28 00:43:03,926 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra 2024-05-28 00:43:03,926 [ scc.merge] INFO Already up to date. 2024-05-28 00:43:03,926 [ scc.merge] INFO 2024-05-28 00:43:03,926 [ scc.merge] INFO Merged PRs: 2024-05-28 00:43:03,926 [ scc.merge] INFO - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra' 2024-05-28 00:43:03,926 [ scc.merge] INFO 2024-05-28 00:43:03,926 [ scc.merge] INFO Repository: ome/omero-upload 2024-05-28 00:43:03,926 [ scc.merge] INFO Already up to date. 2024-05-28 00:43:03,926 [ scc.merge] INFO 2024-05-28 00:43:03,926 [ scc.merge] INFO 2024-05-28 00:43:03,926 [ scc.merge] INFO Repository: ome/omero-virtual-microscope 2024-05-28 00:43:03,927 [ scc.merge] INFO Already up to date. 2024-05-28 00:43:03,927 [ scc.merge] INFO 2024-05-28 00:43:03,927 [ scc.merge] INFO 2024-05-28 00:43:03,927 [ scc.merge] INFO Repository: ome/omero-web-zarr 2024-05-28 00:43:03,927 [ scc.merge] INFO Excluded PRs: 2024-05-28 00:43:03,927 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft) 2024-05-28 00:43:03,927 [ scc.merge] INFO Already up to date. 2024-05-28 00:43:03,927 [ scc.merge] INFO 2024-05-28 00:43:03,927 [ scc.merge] INFO Conflicting PRs (not included): 2024-05-28 00:43:03,927 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' 2024-05-28 00:43:03,927 [ scc.merge] INFO 2024-05-28 00:43:03,927 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror 2024-05-28 00:43:03,927 [ scc.merge] INFO Already up to date. 2024-05-28 00:43:03,927 [ scc.merge] INFO 2024-05-28 00:43:03,927 [ scc.merge] INFO 2024-05-28 00:43:03,927 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest 2024-05-28 00:43:03,927 [ scc.merge] INFO Already up to date. 2024-05-28 00:43:03,927 [ scc.merge] INFO 2024-05-28 00:43:03,927 [ scc.merge] INFO 2024-05-28 00:43:03,927 [ scc.merge] INFO Repository: ome/rOMERO-gateway 2024-05-28 00:43:03,927 [ scc.merge] INFO Already up to date. 2024-05-28 00:43:03,927 [ scc.merge] INFO 2024-05-28 00:43:03,927 [ scc.merge] INFO Conflicting PRs (not included): 2024-05-28 00:43:03,927 [ scc.merge] INFO - PR 100 dominikl 'Run tests properly' 2024-05-28 00:43:03,927 [ scc.merge] INFO 2024-05-28 00:43:03,927 [ scc.merge] INFO Repository: ome/scripts 2024-05-28 00:43:03,927 [ scc.merge] INFO Excluded PRs: 2024-05-28 00:43:03,927 [ scc.merge] INFO - PR 216 Tom-TBT 'Key-value pair scripts enhancement' (user: Tom-TBT) 2024-05-28 00:43:03,927 [ scc.merge] INFO - PR 206 Rdornier 'Adding a script that saves data owner as key-value pair' (user: Rdornier) 2024-05-28 00:43:03,927 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn) 2024-05-28 00:43:03,927 [ scc.merge] INFO - PR 103 joshmoore 'Script for calculating min/max' (exclude comment) 2024-05-28 00:43:03,927 [ scc.merge] INFO Already up to date. 2024-05-28 00:43:03,927 [ scc.merge] INFO 2024-05-28 00:43:03,927 [ scc.merge] INFO Conflicting PRs (not included): 2024-05-28 00:43:03,927 [ scc.merge] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py' 2024-05-28 00:43:03,928 [ scc.merge] INFO 2024-05-28 00:43:03,928 [ scc.merge] DEBUG Cleaning remote branches created for merging 2024-05-28 00:43:03,928 [ scc.git] DEBUG Calling 'git remote' 2024-05-28 00:43:03,935 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client 2024-05-28 00:43:03,935 [ scc.git] DEBUG Calling 'git remote' 2024-05-28 00:43:03,941 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:43:03,941 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate 2024-05-28 00:43:03,941 [ scc.git] DEBUG Calling 'git remote' 2024-05-28 00:43:03,947 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:43:03,948 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render 2024-05-28 00:43:03,948 [ scc.git] DEBUG Calling 'git remote' 2024-05-28 00:43:03,955 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:43:03,955 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr 2024-05-28 00:43:03,955 [ scc.git] DEBUG Calling 'git remote' 2024-05-28 00:43:03,963 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:43:03,963 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure 2024-05-28 00:43:03,963 [ scc.git] DEBUG Calling 'git remote' 2024-05-28 00:43:03,969 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:43:03,969 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage 2024-05-28 00:43:03,969 [ scc.git] DEBUG Calling 'git remote' 2024-05-28 00:43:03,976 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:43:03,976 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery 2024-05-28 00:43:03,976 [ scc.git] DEBUG Calling 'git remote' 2024-05-28 00:43:03,983 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:43:03,983 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer 2024-05-28 00:43:03,983 [ scc.git] DEBUG Calling 'git remote' 2024-05-28 00:43:03,990 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:43:03,991 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr 2024-05-28 00:43:03,991 [ scc.git] DEBUG Calling 'git remote' 2024-05-28 00:43:03,997 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:43:03,998 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata 2024-05-28 00:43:03,998 [ scc.git] DEBUG Calling 'git remote' 2024-05-28 00:43:04,007 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:43:04,008 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade 2024-05-28 00:43:04,008 [ scc.git] DEBUG Calling 'git remote' 2024-05-28 00:43:04,016 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:43:04,016 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools 2024-05-28 00:43:04,016 [ scc.git] DEBUG Calling 'git remote' 2024-05-28 00:43:04,023 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:43:04,023 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois 2024-05-28 00:43:04,023 [ scc.git] DEBUG Calling 'git remote' 2024-05-28 00:43:04,030 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:43:04,030 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup 2024-05-28 00:43:04,030 [ scc.git] DEBUG Calling 'git remote' 2024-05-28 00:43:04,037 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:43:04,037 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra 2024-05-28 00:43:04,037 [ scc.git] DEBUG Calling 'git remote' 2024-05-28 00:43:04,043 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:43:04,043 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload 2024-05-28 00:43:04,043 [ scc.git] DEBUG Calling 'git remote' 2024-05-28 00:43:04,049 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:43:04,049 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope 2024-05-28 00:43:04,049 [ scc.git] DEBUG Calling 'git remote' 2024-05-28 00:43:04,055 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:43:04,055 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr 2024-05-28 00:43:04,055 [ scc.git] DEBUG Calling 'git remote' 2024-05-28 00:43:04,061 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:43:04,062 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror 2024-05-28 00:43:04,062 [ scc.git] DEBUG Calling 'git remote' 2024-05-28 00:43:04,067 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:43:04,068 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest 2024-05-28 00:43:04,068 [ scc.git] DEBUG Calling 'git remote' 2024-05-28 00:43:04,074 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:43:04,074 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway 2024-05-28 00:43:04,074 [ scc.git] DEBUG Calling 'git remote' 2024-05-28 00:43:04,080 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2024-05-28 00:43:04,081 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts 2024-05-28 00:43:04,081 [ scc.git] DEBUG Calling 'git remote' 2024-05-28 00:43:04,087 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push Update component versions python3: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory python3: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: The wheel package is not available. WARNING: The wheel package is not available. WARNING: The wheel package is not available. WARNING: The wheel package is not available. WARNING: The wheel package is not available. WARNING: The wheel package is not available. /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.9/site-packages/setuptools/dist.py:466: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0' warnings.warn(tmpl.format(**locals())) /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.9/site-packages/setuptools/dist.py:466: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0' warnings.warn(tmpl.format(**locals())) python3: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory python3: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py python3: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory python3: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py python3: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory python3: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory Updating omero-gateway from 5.9.1 to 5.9.2-SNAPSHOT grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: 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build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Commit all component version changes Entering 'minimal-omero-client' Entering 'omero-cli-duplicate' Entering 'omero-cli-render' Entering 'omero-cli-zarr' Entering 'omero-figure' Entering 'omero-fpbioimage' Entering 'omero-gallery' Entering 'omero-iviewer' Entering 'omero-mapr' Entering 'omero-metadata' Entering 'omero-parade' Entering 'omero-prometheus-tools' Entering 'omero-rois' Entering 'omero-signup' Entering 'omero-test-infra' Entering 'omero-upload' Entering 'omero-virtual-microscope' Entering 'omero-web-zarr' Entering 'omero-weberror' Entering 'omero-webtest' Entering 'rOMERO-gateway' Entering 'scripts' Entering 'minimal-omero-client' [detached HEAD f6e4902] Update component versions 1 file changed, 1 insertion(+), 1 deletion(-) Entering 'omero-cli-duplicate' HEAD detached from 027b3e6 nothing to commit, working tree clean Entering 'omero-cli-render' HEAD detached from 53e3f42 nothing to commit, working tree clean Entering 'omero-cli-zarr' HEAD detached from 2ca566b Untracked files: (use "git add <file>..." to include in what will be committed) .eggs/ nothing added to commit but untracked files present (use "git add" to track) Entering 'omero-figure' HEAD detached from 3d9e3b87 nothing to commit, working tree clean Entering 'omero-fpbioimage' HEAD detached from e5b3ca3 nothing to commit, working tree clean Entering 'omero-gallery' HEAD detached from 56f4435 nothing to commit, working tree clean Entering 'omero-iviewer' HEAD detached from 7b7a637 nothing to commit, working tree clean Entering 'omero-mapr' HEAD detached from 9631b15 nothing to commit, working tree clean Entering 'omero-metadata' HEAD detached from e2fc5ec nothing to commit, working tree clean Entering 'omero-parade' HEAD detached from 5d441c2 nothing to commit, working tree clean Entering 'omero-prometheus-tools' HEAD detached from 18bccb6 nothing to commit, working tree clean Entering 'omero-rois' HEAD detached from 5c752d5 nothing to commit, working tree clean Entering 'omero-signup' HEAD detached from c8610db nothing to commit, working tree clean Entering 'omero-test-infra' HEAD detached from 7688c54 nothing to commit, working tree clean Entering 'omero-upload' HEAD detached from aca9e9c nothing to commit, working tree clean Entering 'omero-virtual-microscope' HEAD detached from deab817 nothing to commit, working tree clean Entering 'omero-web-zarr' HEAD detached from 67bb245 nothing to commit, working tree clean Entering 'omero-weberror' HEAD detached from adfa132 nothing to commit, working tree clean Entering 'omero-webtest' HEAD detached from 8da48e1 nothing to commit, working tree clean Entering 'rOMERO-gateway' HEAD detached from 7b5d64d nothing to commit, working tree clean Entering 'scripts' HEAD detached from 5a90893 nothing to commit, working tree clean [detached HEAD a7319f6] Update component versions 1 file changed, 1 insertion(+), 1 deletion(-) Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 2024-05-28 00:43:50,782 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 2024-05-28 00:43:59,737 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 2024-05-28 00:44:02,039 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2024-05-28 00:44:06,548 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2024-05-28 00:44:53,474 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci [Pipeline] archiveArtifacts Archiving artifacts [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS