Console Output

01:41:29 Started by upstream project "Trigger" build number 514
01:41:29 originally caused by:
01:41:29  Started by timer
01:41:29 Running as SYSTEM
01:41:29 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-training
01:41:29 [OMERO-training] $ /bin/bash -xe /tmp/jenkins9741090646792581044.sh
01:41:29 + rm -rf /home/omero/workspace/OMERO-training/.venv3
01:41:31 + python3.11 -m venv /home/omero/workspace/OMERO-training/.venv3
01:41:37 + source /home/omero/workspace/OMERO-training/.venv3/bin/activate
01:41:37 ++ deactivate nondestructive
01:41:37 ++ '[' -n '' ']'
01:41:37 ++ '[' -n '' ']'
01:41:37 ++ hash -r
01:41:37 ++ '[' -n '' ']'
01:41:37 ++ unset VIRTUAL_ENV
01:41:37 ++ unset VIRTUAL_ENV_PROMPT
01:41:37 ++ '[' '!' nondestructive = nondestructive ']'
01:41:37 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-training/.venv3
01:41:37 ++ export VIRTUAL_ENV
01:41:37 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:41:37 ++ PATH=/home/omero/workspace/OMERO-training/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:41:37 ++ export PATH
01:41:37 ++ '[' -n '' ']'
01:41:37 ++ '[' -z '' ']'
01:41:37 ++ _OLD_VIRTUAL_PS1=
01:41:37 ++ PS1='(.venv3) '
01:41:37 ++ export PS1
01:41:37 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
01:41:37 ++ export VIRTUAL_ENV_PROMPT
01:41:37 ++ hash -r
01:41:37 + pip install -U pip setuptools
01:41:37 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
01:41:38 Collecting pip
01:41:38   Using cached pip-25.1.1-py3-none-any.whl (1.8 MB)
01:41:38 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (65.5.1)
01:41:38 Collecting setuptools
01:41:38   Using cached setuptools-80.9.0-py3-none-any.whl (1.2 MB)
01:41:38 Installing collected packages: setuptools, pip
01:41:38   Attempting uninstall: setuptools
01:41:38     Found existing installation: setuptools 65.5.1
01:41:38     Uninstalling setuptools-65.5.1:
01:41:38       Successfully uninstalled setuptools-65.5.1
01:41:40   Attempting uninstall: pip
01:41:40     Found existing installation: pip 22.3.1
01:41:40     Uninstalling pip-22.3.1:
01:41:40       Successfully uninstalled pip-22.3.1
01:41:44 Successfully installed pip-25.1.1 setuptools-80.9.0
01:41:44 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
01:41:44 Collecting zeroc-ice==3.6.5
01:41:45   Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
01:41:47      ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 23.3 MB/s eta 0:00:00
01:41:47 Installing collected packages: zeroc-ice
01:41:48 Successfully installed zeroc-ice-3.6.5
01:41:48 + pip install markdown
01:41:49 Collecting markdown
01:41:49   Using cached markdown-3.8-py3-none-any.whl.metadata (5.1 kB)
01:41:49 Using cached markdown-3.8-py3-none-any.whl (106 kB)
01:41:49 Installing collected packages: markdown
01:41:49 Successfully installed markdown-3.8
01:41:49 + pip install mox3 pytest 'pytest-xdist<2'
01:41:50 Collecting mox3
01:41:50   Using cached mox3-1.1.0-py3-none-any.whl.metadata (3.2 kB)
01:41:50 Collecting pytest
01:41:50   Using cached pytest-8.4.0-py3-none-any.whl.metadata (7.7 kB)
01:41:50 Collecting pytest-xdist<2
01:41:50   Using cached pytest_xdist-1.34.0-py2.py3-none-any.whl.metadata (14 kB)
01:41:50 Collecting execnet>=1.1 (from pytest-xdist<2)
01:41:50   Using cached execnet-2.1.1-py3-none-any.whl.metadata (2.9 kB)
01:41:50 Collecting pytest-forked (from pytest-xdist<2)
01:41:50   Using cached pytest_forked-1.6.0-py3-none-any.whl.metadata (3.5 kB)
01:41:50 Collecting six (from pytest-xdist<2)
01:41:50   Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
01:41:50 Collecting pbr!=2.1.0,>=2.0.0 (from mox3)
01:41:50   Using cached pbr-6.1.1-py2.py3-none-any.whl.metadata (3.4 kB)
01:41:50 Collecting fixtures>=3.0.0 (from mox3)
01:41:50   Using cached fixtures-4.2.5-py3-none-any.whl.metadata (22 kB)
01:41:50 Collecting iniconfig>=1 (from pytest)
01:41:50   Using cached iniconfig-2.1.0-py3-none-any.whl.metadata (2.7 kB)
01:41:50 Collecting packaging>=20 (from pytest)
01:41:50   Using cached packaging-25.0-py3-none-any.whl.metadata (3.3 kB)
01:41:50 Collecting pluggy<2,>=1.5 (from pytest)
01:41:50   Using cached pluggy-1.6.0-py3-none-any.whl.metadata (4.8 kB)
01:41:50 Collecting pygments>=2.7.2 (from pytest)
01:41:50   Using cached pygments-2.19.1-py3-none-any.whl.metadata (2.5 kB)
01:41:50 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from pbr!=2.1.0,>=2.0.0->mox3) (80.9.0)
01:41:50 Collecting py (from pytest-forked->pytest-xdist<2)
01:41:50   Using cached py-1.11.0-py2.py3-none-any.whl.metadata (2.8 kB)
01:41:50 Using cached pytest_xdist-1.34.0-py2.py3-none-any.whl (36 kB)
01:41:50 Using cached mox3-1.1.0-py3-none-any.whl (43 kB)
01:41:50 Using cached pytest-8.4.0-py3-none-any.whl (363 kB)
01:41:50 Using cached pluggy-1.6.0-py3-none-any.whl (20 kB)
01:41:51 Using cached execnet-2.1.1-py3-none-any.whl (40 kB)
01:41:51 Using cached fixtures-4.2.5-py3-none-any.whl (64 kB)
01:41:51 Using cached iniconfig-2.1.0-py3-none-any.whl (6.0 kB)
01:41:51 Using cached packaging-25.0-py3-none-any.whl (66 kB)
01:41:51 Using cached pbr-6.1.1-py2.py3-none-any.whl (108 kB)
01:41:51 Using cached pygments-2.19.1-py3-none-any.whl (1.2 MB)
01:41:51 Using cached pytest_forked-1.6.0-py3-none-any.whl (4.9 kB)
01:41:51 Using cached py-1.11.0-py2.py3-none-any.whl (98 kB)
01:41:51 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
01:41:51 Installing collected packages: six, pygments, py, pluggy, pbr, packaging, iniconfig, fixtures, execnet, pytest, mox3, pytest-forked, pytest-xdist
01:41:53 
01:41:53 Successfully installed execnet-2.1.1 fixtures-4.2.5 iniconfig-2.1.0 mox3-1.1.0 packaging-25.0 pbr-6.1.1 pluggy-1.6.0 py-1.11.0 pygments-2.19.1 pytest-8.4.0 pytest-forked-1.6.0 pytest-xdist-1.34.0 six-1.17.0
01:41:53 + pip install tables
01:41:54 Collecting tables
01:41:54   Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB)
01:41:54 Collecting numpy>=1.20.0 (from tables)
01:41:54   Using cached numpy-2.3.0-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (62 kB)
01:41:54 Collecting numexpr>=2.6.2 (from tables)
01:41:54   Using cached numexpr-2.11.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
01:41:54 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from tables) (25.0)
01:41:54 Collecting py-cpuinfo (from tables)
01:41:54   Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
01:41:54 Collecting blosc2>=2.3.0 (from tables)
01:41:54   Using cached blosc2-3.3.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.9 kB)
01:41:54 Collecting typing-extensions>=4.4.0 (from tables)
01:41:54   Using cached typing_extensions-4.14.0-py3-none-any.whl.metadata (3.0 kB)
01:41:55 Collecting ndindex (from blosc2>=2.3.0->tables)
01:41:55   Using cached ndindex-1.10.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.6 kB)
01:41:55 Collecting msgpack (from blosc2>=2.3.0->tables)
01:41:55   Using cached msgpack-1.1.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.4 kB)
01:41:55 Collecting platformdirs (from blosc2>=2.3.0->tables)
01:41:55   Using cached platformdirs-4.3.8-py3-none-any.whl.metadata (12 kB)
01:41:55 Collecting requests (from blosc2>=2.3.0->tables)
01:41:55   Using cached requests-2.32.4-py3-none-any.whl.metadata (4.9 kB)
01:41:55 Collecting charset_normalizer<4,>=2 (from requests->blosc2>=2.3.0->tables)
01:41:55   Using cached charset_normalizer-3.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (35 kB)
01:41:55 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables)
01:41:55   Using cached idna-3.10-py3-none-any.whl.metadata (10 kB)
01:41:55 Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables)
01:41:55   Using cached urllib3-2.4.0-py3-none-any.whl.metadata (6.5 kB)
01:41:55 Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables)
01:41:55   Using cached certifi-2025.4.26-py3-none-any.whl.metadata (2.5 kB)
01:41:55 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
01:41:55 Using cached blosc2-3.3.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB)
01:41:55 Using cached numexpr-2.11.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (401 kB)
01:41:55 Using cached numpy-2.3.0-cp311-cp311-manylinux_2_28_x86_64.whl (16.9 MB)
01:41:55 Using cached typing_extensions-4.14.0-py3-none-any.whl (43 kB)
01:41:55 Using cached msgpack-1.1.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (403 kB)
01:41:55 Using cached ndindex-1.10.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (528 kB)
01:41:55 Using cached platformdirs-4.3.8-py3-none-any.whl (18 kB)
01:41:55 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
01:41:55 Using cached requests-2.32.4-py3-none-any.whl (64 kB)
01:41:55 Using cached charset_normalizer-3.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (147 kB)
01:41:55 Using cached idna-3.10-py3-none-any.whl (70 kB)
01:41:55 Using cached urllib3-2.4.0-py3-none-any.whl (128 kB)
01:41:55 Using cached certifi-2025.4.26-py3-none-any.whl (159 kB)
01:41:55 Installing collected packages: py-cpuinfo, urllib3, typing-extensions, platformdirs, numpy, ndindex, msgpack, idna, charset_normalizer, certifi, requests, numexpr, blosc2, tables
01:42:00 
01:42:00 Successfully installed blosc2-3.3.4 certifi-2025.4.26 charset_normalizer-3.4.2 idna-3.10 msgpack-1.1.0 ndindex-1.10.0 numexpr-2.11.0 numpy-2.3.0 platformdirs-4.3.8 py-cpuinfo-9.0.0 requests-2.32.4 tables-3.10.2 typing-extensions-4.14.0 urllib3-2.4.0
01:42:00 + pip install jinja2
01:42:01 Collecting jinja2
01:42:01   Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
01:42:01 Collecting MarkupSafe>=2.0 (from jinja2)
01:42:01   Using cached MarkupSafe-3.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.0 kB)
01:42:01 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
01:42:01 Using cached MarkupSafe-3.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (23 kB)
01:42:01 Installing collected packages: MarkupSafe, jinja2
01:42:01 
01:42:01 Successfully installed MarkupSafe-3.0.2 jinja2-3.1.6
01:42:01 + rm -rf /home/omero/workspace/OMERO-training/omero-blitz-5.8.3-SNAPSHOT-python.zip /home/omero/workspace/OMERO-training/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-training/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-training/omero_py-5.20.1.dev0.tar.gz /home/omero/workspace/OMERO-training/omero_scripts-5.9.1.dev0.tar.gz /home/omero/workspace/OMERO-training/OMERO.server /home/omero/workspace/OMERO-training/omero_web-5.29.1.dev0.tar.gz /home/omero/workspace/OMERO-training/openmicroscopy /home/omero/workspace/OMERO-training/version.properties
01:42:02 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 432
01:42:18 Copied 2 artifacts from "OMERO-build" build number 439
01:42:18 Copied 2 artifacts from "OMERO-build-build" build number 460
01:42:18 [OMERO-training] $ /bin/bash -xe /tmp/jenkins12885671979425491676.sh
01:42:18 + source /home/settings.env
01:42:18 ++ OMERO_DB_HOST=pg
01:42:18 ++ OMERO_DB_USER=postgres
01:42:18 ++ OMERO_DB_PASS=
01:42:18 ++ OMERO_ROOT_PASS=omero
01:42:18 ++ OMERO_DATA_DIR=/OMERO
01:42:18 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:42:18 + export ZIP_FILE=/home/omero/workspace/OMERO-training/omero-blitz-VERSION-python.zip
01:42:18 + ZIP_FILE=/home/omero/workspace/OMERO-training/omero-blitz-VERSION-python.zip
01:42:18 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-training/version.properties
01:42:18 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-training/version.properties
01:42:18 + OMERO_EXAMPLE_DIST=/home/omero/workspace/OMERO-training/openmicroscopy
01:42:18 ++ ls openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439.zip
01:42:18 + ZIP=openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439.zip
01:42:18 + DIST=openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439
01:42:18 + unzip -n openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439.zip
01:42:18 Archive:  openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439.zip
01:42:18    creating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/
01:42:18   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/.classpath-template  
01:42:18    creating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/.github/
01:42:18   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/.github/Pull_Request_Template.md  
01:42:18    creating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/.github/workflows/
01:42:18   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/.github/workflows/docker_build.yml  
01:42:18   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/.github/workflows/release.yml  
01:42:18   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/.github/workflows/source_build.yml  
01:42:18   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/.github/workflows/update.yaml  
01:42:18   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/.mailmap  
01:42:18   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/.project  
01:42:18   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/CMakeLists.txt  
01:42:18   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/CONTRIBUTING.md  
01:42:18   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/Dockerfile  
01:42:18   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/LICENSE.txt  
01:42:18   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/README.md  
01:42:18   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/SUPPORT.md  
01:42:18   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/build.bat  
01:42:18   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/build.py  
01:42:18   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/build.xml  
01:42:18    creating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/components/
01:42:18    creating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/components/antlib/
01:42:18   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/components/antlib/.classpath  
01:42:18   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/components/antlib/.project  
01:42:18    creating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/components/antlib/resources/
01:42:18   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/components/antlib/resources/excludebugs.xml  
01:42:18   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/components/antlib/resources/global.xml  
01:42:18   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/components/antlib/resources/hibernate.xml  
01:42:18   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/components/antlib/resources/lifecycle.xml  
01:42:18   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/components/antlib/resources/version.xml  
01:42:18    creating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/components/antlib/scripts/
01:42:18   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/components/antlib/scripts/parse_version  
01:42:18   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/components/antlib/scripts/source-archive.py  
01:42:18    creating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/components/tests/
01:42:18   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/components/tests/build.xml  
01:42:18    creating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/components/tests/ui/
01:42:18   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/components/tests/ui/README.md  
01:42:18   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/components/tests/ui/build.xml  
01:42:18    creating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/components/tests/ui/plugins/
01:42:18   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/components/tests/ui/plugins/robot.py  
01:42:18    creating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/components/tests/ui/resources/
01:42:18   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/components/tests/ui/resources/robot.template  
01:42:18    creating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/components/tests/ui/resources/web/
01:42:18   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/components/tests/ui/resources/web/annotation.txt  
01:42:18   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/components/tests/ui/resources/web/login.txt  
01:42:18   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/components/tests/ui/resources/web/thumbs.txt  
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01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/luts/matplotlib/inferno.lut  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/luts/matplotlib/magma.lut  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/luts/matplotlib/plasma.lut  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/luts/matplotlib/viridis.lut  
01:42:19    creating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/luts/ncsa_paledit/
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/luts/ncsa_paledit/16_colors.lut  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/luts/ncsa_paledit/5_ramps.lut  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/luts/ncsa_paledit/6_shades.lut  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/luts/ncsa_paledit/blue_orange_icb.lut  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/luts/ncsa_paledit/brgbcmyw.lut  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/luts/ncsa_paledit/cool.lut  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/luts/ncsa_paledit/edges.lut  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/luts/ncsa_paledit/gem.lut  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/luts/ncsa_paledit/phase.lut  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/luts/ncsa_paledit/royal.lut  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/luts/ncsa_paledit/sepia.lut  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/luts/ncsa_paledit/smart.lut  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/luts/ncsa_paledit/thal.lut  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/luts/ncsa_paledit/thallium.lut  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/luts/ncsa_paledit/unionjack.lut  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/luts/physics.lut  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/luts/red-green.lut  
01:42:19    creating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/luts/seaborn/
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/luts/seaborn/mako.lut  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/luts/seaborn/rocket.lut  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/luts/spectrum.lut  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/luts/thermal.lut  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/luts/turbo.lut  
01:42:19    creating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/luts/wcif/
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/luts/wcif/cyan_hot.lut  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/luts/wcif/green_fire_blue.lut  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/luts/wcif/hilo.lut  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/luts/wcif/ica.lut  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/luts/wcif/ica2.lut  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/luts/wcif/ica3.lut  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/luts/wcif/magenta_hot.lut  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/luts/wcif/orange_hot.lut  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/luts/wcif/rainbow_rgb.lut  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/luts/wcif/red_hot.lut  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/luts/wcif/yellow_hot.lut  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/omero.class  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/setup.cfg  
01:42:19    creating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/README.txt  
01:42:19    creating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/misc/
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/misc/Makefile  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/misc/current.sql  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/misc/enums.py  
01:42:19    creating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/
01:42:19    creating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO3A__1/
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO3A__1/OMERO3__7.sql  
01:42:19    creating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO3A__10/
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO3A__10/OMERO3A__9.sql  
01:42:19    creating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO3A__11/
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO3A__11/OMERO3A__10.sql  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO3A__11/OMERO3A__5.sql  
01:42:19    creating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO3A__2/
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO3A__2/OMERO3A__1.sql  
01:42:19    creating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO3A__3/
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO3A__3/OMERO3A__2.sql  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO3A__3/OMERO3__5.sql  
01:42:19    creating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO3A__4/
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO3A__4/OMERO3A__3.sql  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO3A__4/OMERO3__5.sql  
01:42:19    creating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO3A__5/
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO3A__5/OMERO3A__4.sql  
01:42:19    creating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO3A__6/
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO3A__6/OMERO3A__5.sql  
01:42:19    creating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO3A__7/
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO3A__7/OMERO3A__6.sql  
01:42:19    creating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO3A__8/
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO3A__8/OMERO3A__6.sql  
01:42:19    creating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO3A__9/
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO3A__9/OMERO3A__8.sql  
01:42:19    creating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO3__4/
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO3__4/OMERO3__1.sql  
01:42:19    creating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO3__5/
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO3__5/OMERO3__4.sql  
01:42:19    creating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO3__6/
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO3__6/OMERO3__5.sql  
01:42:19    creating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO3__7/
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO3__7/OMERO3__6.sql  
01:42:19    creating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO4.1__0/
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO4.1__0/OMERO4__0.sql  
01:42:19    creating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO4.2__0/
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO4.2__0/OMERO4.1__0.sql  
01:42:19    creating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO4.2__0/t/
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test  
01:42:19    creating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO4.3__0/
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO4.3__0/OMERO4.2__0.sql  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql  
01:42:19    creating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO4.4__0/
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO4.4__0/OMERO4.1__0.sql  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO4.4__0/OMERO4.3__0.sql  
01:42:19    creating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO4__0/
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO4__0/OMERO3A__11.sql  
01:42:19    creating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO5.0__0/
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO5.0__0/OMERO4.4__0.sql  
01:42:19    creating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO5.1__1/
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO5.1__1/OMERO5.0__0.sql  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO5.1__1/OMERO5.1__0.sql  
01:42:19    creating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO5.2__0/
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO5.2__0/OMERO5.1__1.sql  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql  
01:42:19    creating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO5.3__0/
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO5.3__0/OMERO5.2__0.sql  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO5.3__0/delete-ns-orphans.sql  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql  
01:42:19    creating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO5.4DEV__1/
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql  
01:42:19    creating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO5.4DEV__2/
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql  
01:42:19    creating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO5.4DEV__3/
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql  
01:42:19    creating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO5.4__0/
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO5.4__0/OMERO5.3__0.sql  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO5.4__0/OMERO5.3__1.sql  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO5.4__0/psql-footer.sql  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO5.4__0/psql-header.sql  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO5.4__0/schema.sql  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO5.4__0/views.sql  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/test.xml  
01:42:19   inflating: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/update_dependencies.sh  
01:42:19  extracting: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/components/antlib/resources/gitversion.xml  
01:42:19  extracting: openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439/components/tools/OmeroCpp/cmake/GitVersion.cmake  
01:42:19 + rm -f openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439.zip
01:42:19 + mv /home/omero/workspace/OMERO-training/openmicroscopy-5.6.3-564-1cf34e42d9-ice36-b439 /home/omero/workspace/OMERO-training/openmicroscopy
01:42:19 + export OMERODIR=/home/omero/workspace/OMERO-training/OMERO.server
01:42:19 + OMERODIR=/home/omero/workspace/OMERO-training/OMERO.server
01:42:19 ++ ls OMERO.server-5.6.3-564-1cf34e42d9-ice36-b439.zip
01:42:19 + ZIP=OMERO.server-5.6.3-564-1cf34e42d9-ice36-b439.zip
01:42:19 + DIST=OMERO.server-5.6.3-564-1cf34e42d9-ice36-b439
01:42:19 + unzip -n OMERO.server-5.6.3-564-1cf34e42d9-ice36-b439.zip
01:42:19 Archive:  OMERO.server-5.6.3-564-1cf34e42d9-ice36-b439.zip
01:42:19    creating: OMERO.server-5.6.3-564-1cf34e42d9-ice36-b439/
01:42:19    creating: OMERO.server-5.6.3-564-1cf34e42d9-ice36-b439/etc/
01:42:19    creating: OMERO.server-5.6.3-564-1cf34e42d9-ice36-b439/etc/blitz/
01:42:19    creating: OMERO.server-5.6.3-564-1cf34e42d9-ice36-b439/etc/grid/
01:42:19    creating: OMERO.server-5.6.3-564-1cf34e42d9-ice36-b439/etc/profiles/
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01:42:22   inflating: OMERO.server-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO5.4__0/OMERO5.3__1.sql  
01:42:22   inflating: OMERO.server-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql  
01:42:22   inflating: OMERO.server-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql  
01:42:22   inflating: OMERO.server-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO5.4__0/psql-footer.sql  
01:42:22   inflating: OMERO.server-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO5.4__0/psql-header.sql  
01:42:22   inflating: OMERO.server-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO5.4__0/schema.sql  
01:42:22   inflating: OMERO.server-5.6.3-564-1cf34e42d9-ice36-b439/sql/psql/OMERO5.4__0/views.sql  
01:42:22 + rm -f OMERO.server-5.6.3-564-1cf34e42d9-ice36-b439.zip
01:42:22 + mv /home/omero/workspace/OMERO-training/OMERO.server-5.6.3-564-1cf34e42d9-ice36-b439 /home/omero/workspace/OMERO-training/OMERO.server
01:42:22 + source /home/omero/workspace/OMERO-training/.venv3/bin/activate
01:42:22 ++ deactivate nondestructive
01:42:22 ++ '[' -n '' ']'
01:42:22 ++ '[' -n '' ']'
01:42:22 ++ hash -r
01:42:22 ++ '[' -n '' ']'
01:42:22 ++ unset VIRTUAL_ENV
01:42:22 ++ unset VIRTUAL_ENV_PROMPT
01:42:22 ++ '[' '!' nondestructive = nondestructive ']'
01:42:22 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-training/.venv3
01:42:22 ++ export VIRTUAL_ENV
01:42:22 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:42:22 ++ PATH=/home/omero/workspace/OMERO-training/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:42:22 ++ export PATH
01:42:22 ++ '[' -n '' ']'
01:42:22 ++ '[' -z '' ']'
01:42:22 ++ _OLD_VIRTUAL_PS1=
01:42:22 ++ PS1='(.venv3) '
01:42:22 ++ export PS1
01:42:22 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
01:42:22 ++ export VIRTUAL_ENV_PROMPT
01:42:22 ++ hash -r
01:42:22 + for x in *.gz
01:42:22 + pip install omero_dropbox-5.7.1.dev0.tar.gz
01:42:23 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
01:42:23   Installing build dependencies: started
01:42:24   Installing build dependencies: finished with status 'done'
01:42:24   Getting requirements to build wheel: started
01:42:24   Getting requirements to build wheel: finished with status 'done'
01:42:24   Preparing metadata (pyproject.toml): started
01:42:25   Preparing metadata (pyproject.toml): finished with status 'done'
01:42:25 Collecting omero-py (from omero-dropbox==5.7.1.dev0)
01:42:25   Using cached omero_py-5.20.0-py3-none-any.whl.metadata (6.5 kB)
01:42:25 Collecting urllib3<2 (from omero-py->omero-dropbox==5.7.1.dev0)
01:42:25   Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB)
01:42:25 Collecting appdirs (from omero-py->omero-dropbox==5.7.1.dev0)
01:42:25   Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
01:42:25 Collecting future (from omero-py->omero-dropbox==5.7.1.dev0)
01:42:25   Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
01:42:25 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.3.0)
01:42:25 Collecting Pillow>=10.0.0 (from omero-py->omero-dropbox==5.7.1.dev0)
01:42:25   Using cached pillow-11.2.1-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (8.9 kB)
01:42:25 Collecting PyYAML (from omero-py->omero-dropbox==5.7.1.dev0)
01:42:25   Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
01:42:25 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
01:42:25 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.4)
01:42:25 Collecting portalocker (from omero-py->omero-dropbox==5.7.1.dev0)
01:42:25   Using cached portalocker-3.1.1-py3-none-any.whl.metadata (8.6 kB)
01:42:25 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.2)
01:42:25 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.10)
01:42:25 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2025.4.26)
01:42:25 Using cached omero_py-5.20.0-py3-none-any.whl (2.8 MB)
01:42:25 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
01:42:25 Using cached pillow-11.2.1-cp311-cp311-manylinux_2_28_x86_64.whl (4.6 MB)
01:42:25 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
01:42:25 Using cached future-1.0.0-py3-none-any.whl (491 kB)
01:42:25 Using cached portalocker-3.1.1-py3-none-any.whl (19 kB)
01:42:25 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB)
01:42:26 Building wheels for collected packages: omero-dropbox
01:42:26   Building wheel for omero-dropbox (pyproject.toml): started
01:42:26   Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
01:42:26   Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49138 sha256=651cf5996014416b3df262894b7ecb767f65d331cca4804759d49df7ae200e01
01:42:26   Stored in directory: /home/omero/.cache/pip/wheels/27/2f/e4/2a907ecffe4660d4c840758e6c0660e7ef9d3bb50ad634b559
01:42:26 Successfully built omero-dropbox
01:42:26 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, Pillow, future, omero-py, omero-dropbox
01:42:26   Attempting uninstall: urllib3
01:42:26     Found existing installation: urllib3 2.4.0
01:42:26     Uninstalling urllib3-2.4.0:
01:42:26       Successfully uninstalled urllib3-2.4.0
01:42:30 
01:42:30 Successfully installed Pillow-11.2.1 PyYAML-6.0.2 appdirs-1.4.4 future-1.0.0 omero-dropbox-5.7.1.dev0 omero-py-5.20.0 portalocker-3.1.1 urllib3-1.26.20
01:42:30 + for x in *.gz
01:42:30 + pip install omero_marshal-0.9.1.dev0.tar.gz
01:42:30 Processing ./omero_marshal-0.9.1.dev0.tar.gz
01:42:30   Installing build dependencies: started
01:42:32   Installing build dependencies: finished with status 'done'
01:42:32   Getting requirements to build wheel: started
01:42:32   Getting requirements to build wheel: finished with status 'done'
01:42:32   Preparing metadata (pyproject.toml): started
01:42:33   Preparing metadata (pyproject.toml): finished with status 'done'
01:42:33 Building wheels for collected packages: omero_marshal
01:42:33   Building wheel for omero_marshal (pyproject.toml): started
01:42:33   Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
01:42:33   Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88126 sha256=972296c3a5f9796f728eb7a5cd0d53dba98c5c0a1754c6c9da8a32be8aeb169a
01:42:33   Stored in directory: /home/omero/.cache/pip/wheels/a4/f2/95/cb0485f5ab8317342e3c0c0088db9be0a3d5176163e4a30134
01:42:33 Successfully built omero_marshal
01:42:33 Installing collected packages: omero_marshal
01:42:33 Successfully installed omero_marshal-0.9.1.dev0
01:42:33 + for x in *.gz
01:42:33 + pip install omero_py-5.20.1.dev0.tar.gz
01:42:34 Processing ./omero_py-5.20.1.dev0.tar.gz
01:42:34   Installing build dependencies: started
01:42:35   Installing build dependencies: finished with status 'done'
01:42:35   Getting requirements to build wheel: started
01:42:36   Getting requirements to build wheel: finished with status 'done'
01:42:36   Preparing metadata (pyproject.toml): started
01:42:36   Preparing metadata (pyproject.toml): finished with status 'done'
01:42:36 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.1.dev0) (1.26.20)
01:42:36 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.1.dev0) (1.4.4)
01:42:36 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.1.dev0) (1.0.0)
01:42:36 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.1.dev0) (2.3.0)
01:42:36 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.1.dev0) (11.2.1)
01:42:36 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.1.dev0) (6.0.2)
01:42:36 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.1.dev0) (3.6.5)
01:42:36 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.1.dev0) (2.32.4)
01:42:36 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.1.dev0) (3.1.1)
01:42:36 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.20.1.dev0) (3.4.2)
01:42:36 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.20.1.dev0) (3.10)
01:42:36 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.20.1.dev0) (2025.4.26)
01:42:36 Building wheels for collected packages: omero-py
01:42:36   Building wheel for omero-py (pyproject.toml): started
01:42:38   Building wheel for omero-py (pyproject.toml): finished with status 'done'
01:42:38   Created wheel for omero-py: filename=omero_py-5.20.1.dev0-py3-none-any.whl size=2783494 sha256=8828b369d8a7087464f27c14285f516647e5677c375ed53ccbe7835ea441fd7f
01:42:38   Stored in directory: /home/omero/.cache/pip/wheels/65/ed/6b/44c1afe7f779e1d5f1ae75ea7c2f7bd84bc199ea8eb8ccba57
01:42:38 Successfully built omero-py
01:42:38 Installing collected packages: omero-py
01:42:38   Attempting uninstall: omero-py
01:42:38     Found existing installation: omero-py 5.20.0
01:42:38     Uninstalling omero-py-5.20.0:
01:42:39       Successfully uninstalled omero-py-5.20.0
01:42:42 Successfully installed omero-py-5.20.1.dev0
01:42:42 + for x in *.gz
01:42:42 + pip install omero_scripts-5.9.1.dev0.tar.gz
01:42:43 Processing ./omero_scripts-5.9.1.dev0.tar.gz
01:42:43   Installing build dependencies: started
01:42:44   Installing build dependencies: finished with status 'done'
01:42:44   Getting requirements to build wheel: started
01:42:45   Getting requirements to build wheel: finished with status 'done'
01:42:45   Preparing metadata (pyproject.toml): started
01:42:45   Preparing metadata (pyproject.toml): finished with status 'done'
01:42:45 Building wheels for collected packages: omero-scripts
01:42:45   Building wheel for omero-scripts (pyproject.toml): started
01:42:45   Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
01:42:45   Created wheel for omero-scripts: filename=omero_scripts-5.9.1.dev0-py3-none-any.whl size=136848 sha256=7eff7f3a3f348657940b4e98939220aa95e74f3c70892c172fa362708eebeb94
01:42:45   Stored in directory: /home/omero/.cache/pip/wheels/71/c9/dd/b2501ccc8404c4294296f475fc94ecbb2eb641198417b05d3f
01:42:46 Successfully built omero-scripts
01:42:46 Installing collected packages: omero-scripts
01:42:49 Successfully installed omero-scripts-5.9.1.dev0
01:42:49 + for x in *.gz
01:42:49 + pip install omero_web-5.29.1.dev0.tar.gz
01:42:49 Processing ./omero_web-5.29.1.dev0.tar.gz
01:42:50   Installing build dependencies: started
01:42:51   Installing build dependencies: finished with status 'done'
01:42:51   Getting requirements to build wheel: started
01:42:52   Getting requirements to build wheel: finished with status 'done'
01:42:52   Preparing metadata (pyproject.toml): started
01:42:52   Preparing metadata (pyproject.toml): finished with status 'done'
01:42:52 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (5.20.1.dev0)
01:42:52 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.29.1.dev0)
01:42:52   Using cached concurrent_log_handler-0.9.28-py3-none-any.whl.metadata (23 kB)
01:42:52 Collecting Django<4.3,>=4.2.3 (from omero-web==5.29.1.dev0)
01:42:52   Using cached django-4.2.23-py3-none-any.whl.metadata (4.2 kB)
01:42:52 Collecting django-pipeline (from omero-web==5.29.1.dev0)
01:42:52   Using cached django_pipeline-4.0.0-py3-none-any.whl.metadata (5.8 kB)
01:42:52 Collecting django-cors-headers==3.7.0 (from omero-web==5.29.1.dev0)
01:42:52   Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
01:42:52 Collecting django-csp (from omero-web==5.29.1.dev0)
01:42:52   Using cached django_csp-4.0-py3-none-any.whl.metadata (3.6 kB)
01:42:52 Collecting whitenoise>=5.3.0 (from omero-web==5.29.1.dev0)
01:42:52   Using cached whitenoise-6.9.0-py3-none-any.whl.metadata (3.6 kB)
01:42:53 Collecting gunicorn>=19.3 (from omero-web==5.29.1.dev0)
01:42:53   Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB)
01:42:53 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (0.9.1.dev0)
01:42:53 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (11.2.1)
01:42:53 Collecting pytz (from omero-web==5.29.1.dev0)
01:42:53   Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB)
01:42:53 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (3.1.1)
01:42:53 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (25.0)
01:42:53 Collecting importlib-resources (from omero-web==5.29.1.dev0)
01:42:53   Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
01:42:53 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.29.1.dev0)
01:42:53   Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB)
01:42:53 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.29.1.dev0)
01:42:53   Using cached sqlparse-0.5.3-py3-none-any.whl.metadata (3.9 kB)
01:42:53 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.26.20)
01:42:53 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.4.4)
01:42:53 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.0.0)
01:42:53 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (2.3.0)
01:42:53 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (6.0.2)
01:42:53 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (3.6.5)
01:42:53 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (2.32.4)
01:42:53 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web==5.29.1.dev0) (80.9.0)
01:42:53 Collecting wheel (from django-pipeline->omero-web==5.29.1.dev0)
01:42:53   Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB)
01:42:53 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.1.dev0) (3.4.2)
01:42:53 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.1.dev0) (3.10)
01:42:53 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.1.dev0) (2025.4.26)
01:42:53 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
01:42:53 Using cached django-4.2.23-py3-none-any.whl (8.0 MB)
01:42:53 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB)
01:42:53 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl (28 kB)
01:42:53 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB)
01:42:53 Using cached sqlparse-0.5.3-py3-none-any.whl (44 kB)
01:42:53 Using cached whitenoise-6.9.0-py3-none-any.whl (20 kB)
01:42:53 Using cached django_csp-4.0-py3-none-any.whl (25 kB)
01:42:53 Using cached django_pipeline-4.0.0-py3-none-any.whl (75 kB)
01:42:53 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
01:42:53 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB)
01:42:53 Using cached wheel-0.45.1-py3-none-any.whl (72 kB)
01:42:53 Building wheels for collected packages: omero-web
01:42:53   Building wheel for omero-web (pyproject.toml): started
01:42:55   Building wheel for omero-web (pyproject.toml): finished with status 'done'
01:42:55   Created wheel for omero-web: filename=omero_web-5.29.1.dev0-py3-none-any.whl size=2817926 sha256=1c95e027ee3d7c92bd0656f346d5fc9e598e1e3f78c7835350ed4552366b0a48
01:42:55   Stored in directory: /home/omero/.cache/pip/wheels/c5/50/a2/cb5e27330c70ada4091d0af06230062da388b11f8ccae558fb
01:42:55 Successfully built omero-web
01:42:55 Installing collected packages: pytz, whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-csp, django-cors-headers, omero-web
01:43:00 
01:43:00 Successfully installed Django-4.2.23 asgiref-3.8.1 concurrent-log-handler-0.9.28 django-cors-headers-3.7.0 django-csp-4.0 django-pipeline-4.0.0 gunicorn-23.0.0 importlib-resources-6.5.2 omero-web-5.29.1.dev0 pytz-2025.2 sqlparse-0.5.3 wheel-0.45.1 whitenoise-6.9.0
01:43:00 + cd /home/omero/workspace/OMERO-training/OMERO.server
01:43:00 + ROOT_PASSWORD=omeroalecesky
01:43:00 + bash /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_setup.sh
01:43:00 + HOSTNAME=d043aa3894d1
01:43:00 + PORT=4064
01:43:00 + WEBHOST=http://nginx/web
01:43:00 + SERVER_NAME=omero
01:43:00 + ROOT_PASSWORD=omeroalecesky
01:43:00 + GROUP_NAME=training_group
01:43:00 + GROUP_NAME_2=training_group-2
01:43:00 + USER_NAME=training_user
01:43:00 + USER_NAME_2=training_user-2
01:43:00 + LIGHTADMIN_USER_NAME=ladmin_user
01:43:00 + USER_PASSWORD=ome
01:43:00 + CONFIG_FILENAME=training_ice.config
01:43:00 + omero login root@d043aa3894d1:4064 -w omeroalecesky
01:43:02 Created session for root@d043aa3894d1:4064. Idle timeout: 10 min. Current group: system
01:43:02 + omero group add training_group --type read-only --ignore-existing
01:43:04 Using session for root@d043aa3894d1:4064. Idle timeout: 10 min. Current group: system
01:43:04 Group exists: training_group (id=3)
01:43:04 + omero group add training_group-2 --type read-only --ignore-existing
01:43:05 Using session for root@d043aa3894d1:4064. Idle timeout: 10 min. Current group: system
01:43:05 Group exists: training_group-2 (id=4)
01:43:05 + omero user add training_user training_user training_user training_group training_group-2 --ignore-existing -P ome
01:43:07 Using session for root@d043aa3894d1:4064. Idle timeout: 10 min. Current group: system
01:43:07 User exists: training_user (id=2)
01:43:07 + omero user joingroup --name training_user --group-name training_group training_group-2
01:43:09 Using session for root@d043aa3894d1:4064. Idle timeout: 10 min. Current group: system
01:43:09 2 is already in group 3
01:43:09 2 is already in group 4
01:43:09 + omero user add training_user-2 training_user-2 training_user-2 training_group training_group-2 --ignore-existing -P ome
01:43:10 Using session for root@d043aa3894d1:4064. Idle timeout: 10 min. Current group: system
01:43:10 User exists: training_user-2 (id=3)
01:43:10 + omero user joingroup --name training_user-2 --group-name training_group training_group-2
01:43:12 Using session for root@d043aa3894d1:4064. Idle timeout: 10 min. Current group: system
01:43:12 3 is already in group 3
01:43:12 3 is already in group 4
01:43:12 + omero user add ladmin_user ladmin_user ladmin_user training_group training_group-2 -a --ignore-existing -P ome
01:43:13 Using session for root@d043aa3894d1:4064. Idle timeout: 10 min. Current group: system
01:43:13 User exists: ladmin_user (id=4)
01:43:13 + omero user joingroup --name ladmin_user --group-name training_group training_group-2
01:43:15 Using session for root@d043aa3894d1:4064. Idle timeout: 10 min. Current group: system
01:43:15 4 is already in group 3
01:43:15 4 is already in group 4
01:43:15 ++ omero user info ladmin_user --style plain
01:43:15 ++ cut -d, -f1
01:43:16 Using session for root@d043aa3894d1:4064. Idle timeout: 10 min. Current group: system
01:43:16 + id=4
01:43:16 + omero obj map-set Experimenter:4 config AdminPrivilege:Sudo true
01:43:18 Using session for root@d043aa3894d1:4064. Idle timeout: 10 min. Current group: system
01:43:18 Experimenter:4
01:43:18 + omero logout
01:43:20 + touch test.fake
01:43:20 + omero login training_user@d043aa3894d1:4064 -w ome -g training_group
01:43:22 Created session for training_user@d043aa3894d1:4064. Idle timeout: 10 min. Current group: training_group
01:43:22 + nProjects=1
01:43:22 + nDatasets=2
01:43:22 + echo 'Creating projects and datasets'
01:43:22 Creating projects and datasets
01:43:22 + (( i=1 ))
01:43:22 + (( i<=1 ))
01:43:22 ++ omero obj new Project 'name=Project 1'
01:43:23 Using session for training_user@d043aa3894d1:4064. Idle timeout: 10 min. Current group: training_group
01:43:24 + project=Project:19701
01:43:24 + (( j=1 ))
01:43:24 + (( j<=2 ))
01:43:24 ++ omero obj new Dataset 'name=Dataset 1-1'
01:43:25 Using session for training_user@d043aa3894d1:4064. Idle timeout: 10 min. Current group: training_group
01:43:26 + dataset=Dataset:19801
01:43:26 + omero obj new ProjectDatasetLink parent=Project:19701 child=Dataset:19801
01:43:27 Using session for training_user@d043aa3894d1:4064. Idle timeout: 10 min. Current group: training_group
01:43:27 ProjectDatasetLink:19701
01:43:28 + echo 'Importing image into dataset'
01:43:28 Importing image into dataset
01:43:28 + omero import -d Dataset:19801 test.fake --debug ERROR
01:43:29 Using session for training_user@d043aa3894d1:4064. Idle timeout: 10 min. Current group: training_group
01:43:30 2025-06-11 01:43:30,754 590        [      main] INFO          ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.3-SNAPSHOT
01:43:30 2025-06-11 01:43:30,780 616        [      main] INFO          ome.formats.importer.ImportConfig - Bioformats version: 8.3.0-SNAPSHOT revision: e06c130bc55304d6cbb1355cf55ca194ee262674 date: 11 June 2025
01:43:51 Image:24851
01:43:51 Other imported objects:
01:43:51 Fileset:21451
01:43:51 
01:43:51 ==> Summary
01:43:51 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:16.884
01:43:51 + (( j++  ))
01:43:51 + (( j<=2 ))
01:43:51 ++ omero obj new Dataset 'name=Dataset 1-2'
01:43:53 Using session for training_user@d043aa3894d1:4064. Idle timeout: 10 min. Current group: training_group
01:43:53 + dataset=Dataset:19802
01:43:53 + omero obj new ProjectDatasetLink parent=Project:19701 child=Dataset:19802
01:43:54 Using session for training_user@d043aa3894d1:4064. Idle timeout: 10 min. Current group: training_group
01:43:54 ProjectDatasetLink:19702
01:43:55 + echo 'Importing image into dataset'
01:43:55 Importing image into dataset
01:43:55 + omero import -d Dataset:19802 test.fake --debug ERROR
01:43:56 Using session for training_user@d043aa3894d1:4064. Idle timeout: 10 min. Current group: training_group
01:43:57 2025-06-11 01:43:57,734 561        [      main] INFO          ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.3-SNAPSHOT
01:43:57 2025-06-11 01:43:57,761 588        [      main] INFO          ome.formats.importer.ImportConfig - Bioformats version: 8.3.0-SNAPSHOT revision: e06c130bc55304d6cbb1355cf55ca194ee262674 date: 11 June 2025
01:44:05 Image:24852
01:44:05 Other imported objects:
01:44:05 Fileset:21452
01:44:05 
01:44:05 ==> Summary
01:44:05 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:04.487
01:44:05 + (( j++  ))
01:44:05 + (( j<=2 ))
01:44:05 + (( i++  ))
01:44:05 + (( i<=1 ))
01:44:05 + (( j=1 ))
01:44:05 + (( j<=2 ))
01:44:05 + omero obj new Dataset 'name=Orphaned dataset 1'
01:44:07 Using session for training_user@d043aa3894d1:4064. Idle timeout: 10 min. Current group: training_group
01:44:07 Dataset:19803
01:44:07 + (( j++  ))
01:44:07 + (( j<=2 ))
01:44:07 + omero obj new Dataset 'name=Orphaned dataset 2'
01:44:08 Using session for training_user@d043aa3894d1:4064. Idle timeout: 10 min. Current group: training_group
01:44:08 Dataset:19804
01:44:09 + (( j++  ))
01:44:09 + (( j<=2 ))
01:44:09 + echo 'Importing image file'
01:44:09 Importing image file
01:44:09 + touch 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
01:44:09 + omero import 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
01:44:21 ++ sed -n -e 's/^Image://p' image_import.log
01:44:21 + imageid=24853
01:44:21 ++ omero obj new MapAnnotation
01:44:23 Using session for training_user@d043aa3894d1:4064. Idle timeout: 10 min. Current group: training_group
01:44:23 + MAP=MapAnnotation:21801
01:44:23 + omero obj map-set MapAnnotation:21801 mapValue testkey testvalue
01:44:24 Using session for training_user@d043aa3894d1:4064. Idle timeout: 10 min. Current group: training_group
01:44:26 MapAnnotation:21801
01:44:26 + omero obj new ImageAnnotationLink parent=Image:24853 child=MapAnnotation:21801
01:44:27 Using session for training_user@d043aa3894d1:4064. Idle timeout: 10 min. Current group: training_group
01:44:28 ImageAnnotationLink:20601
01:44:28 ++ omero obj new Screen name=Screen
01:44:29 Using session for training_user@d043aa3894d1:4064. Idle timeout: 10 min. Current group: training_group
01:44:30 + screen=Screen:19601
01:44:30 ++ omero obj new Plate name=Plate
01:44:31 Using session for training_user@d043aa3894d1:4064. Idle timeout: 10 min. Current group: training_group
01:44:32 + plate=Plate:19751
01:44:32 + omero obj new ScreenPlateLink parent=Screen:19601 child=Plate:19751
01:44:34 Using session for training_user@d043aa3894d1:4064. Idle timeout: 10 min. Current group: training_group
01:44:34 ScreenPlateLink:19601
01:44:34 + echo 'Importing SPW file'
01:44:34 Importing SPW file
01:44:34 + touch 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake'
01:44:34 + omero import -r Screen:19601 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake'
01:44:52 ++ sed -n -e 's/^Plate://p' plate_import.log
01:44:52 + plateid=19752
01:44:52 + omero logout
01:44:53 + omero login training_user-2@d043aa3894d1:4064 -w ome -g training_group
01:44:55 Created session for training_user-2@d043aa3894d1:4064. Idle timeout: 10 min. Current group: training_group
01:44:55 + omero obj new Project 'name=Project 0'
01:44:57 Using session for training_user-2@d043aa3894d1:4064. Idle timeout: 10 min. Current group: training_group
01:44:57 Project:19702
01:44:57 + omero obj new Dataset 'name=Dataset 0'
01:44:58 Using session for training_user-2@d043aa3894d1:4064. Idle timeout: 10 min. Current group: training_group
01:44:58 Dataset:19805
01:44:59 + omero import test.fake --debug ERROR
01:45:00 Using session for training_user-2@d043aa3894d1:4064. Idle timeout: 10 min. Current group: training_group
01:45:01 2025-06-11 01:45:01,958 625        [      main] INFO          ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.3-SNAPSHOT
01:45:01 2025-06-11 01:45:01,986 653        [      main] INFO          ome.formats.importer.ImportConfig - Bioformats version: 8.3.0-SNAPSHOT revision: e06c130bc55304d6cbb1355cf55ca194ee262674 date: 11 June 2025
01:45:10 Image:24857
01:45:10 Other imported objects:
01:45:10 Fileset:21455
01:45:10 
01:45:10 ==> Summary
01:45:10 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:03.302
01:45:10 + omero obj new Screen name=Screen
01:45:12 Using session for training_user-2@d043aa3894d1:4064. Idle timeout: 10 min. Current group: training_group
01:45:12 Screen:19602
01:45:12 + omero obj new Plate name=Plate
01:45:13 Using session for training_user-2@d043aa3894d1:4064. Idle timeout: 10 min. Current group: training_group
01:45:13 Plate:19753
01:45:14 + omero login training_user@d043aa3894d1:4064 -w ome -g training_group-2
01:45:15 Created session for training_user@d043aa3894d1:4064. Idle timeout: 10 min. Current group: training_group-2
01:45:15 + omero obj new Project 'name=Project 0'
01:45:17 Using session for training_user@d043aa3894d1:4064. Idle timeout: 10 min. Current group: training_group-2
01:45:17 Project:19703
01:45:17 + omero obj new Dataset 'name=Dataset 0'
01:45:18 Using session for training_user@d043aa3894d1:4064. Idle timeout: 10 min. Current group: training_group-2
01:45:18 Dataset:19806
01:45:19 + omero import test.fake --debug ERROR
01:45:20 Using session for training_user@d043aa3894d1:4064. Idle timeout: 10 min. Current group: training_group-2
01:45:21 2025-06-11 01:45:21,844 569        [      main] INFO          ome.formats.importer.ImportConfig - OMERO.blitz Version: 5.8.3-SNAPSHOT
01:45:21 2025-06-11 01:45:21,867 592        [      main] INFO          ome.formats.importer.ImportConfig - Bioformats version: 8.3.0-SNAPSHOT revision: e06c130bc55304d6cbb1355cf55ca194ee262674 date: 11 June 2025
01:45:29 Image:24858
01:45:29 Other imported objects:
01:45:29 Fileset:21456
01:45:29 
01:45:29 ==> Summary
01:45:29 1 file uploaded, 1 fileset created, 1 image imported, 0 errors in 0:00:03.260
01:45:29 + omero obj new Screen name=Screen
01:45:30 Using session for training_user@d043aa3894d1:4064. Idle timeout: 10 min. Current group: training_group-2
01:45:31 Screen:19603
01:45:31 + omero obj new Plate name=Plate
01:45:32 Using session for training_user@d043aa3894d1:4064. Idle timeout: 10 min. Current group: training_group-2
01:45:32 Plate:19754
01:45:32 + omero logout
01:45:34 + echo omero.host=d043aa3894d1
01:45:34 + echo omero.port=4064
01:45:34 + echo omero.webhost=http://nginx/web
01:45:34 + echo omero.servername=omero
01:45:34 + echo omero.user=training_user
01:45:34 + echo omero.pass=ome
01:45:34 + echo omero.group=training_group
01:45:34 + echo omero.projectid=19701
01:45:34 + echo omero.datasetid=19802
01:45:34 + echo omero.imageid=24853
01:45:34 + echo omero.plateid=19752
01:45:34 + echo omero.screenid=19601
01:45:34 + echo omero.group2=training_group-2
01:45:34 + echo omero.ladmin=ladmin_user
01:45:34 + rm 'SPW&plates=1&plateRows=1&plateCols=3&fields=1&plateAcqs=1.fake' test.fake 'test&sizeT=10&sizeZ=5&sizeC=3.fake'
01:45:34 + mv training_ice.config /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training
01:45:34 + omero sessions clear
01:45:35 1 session(s) cleared
01:45:35 !! 06/11/25 01:45:35.836 error: communicator not destroyed during global destruction.+ export ICE_CONFIG=/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_ice.config
01:45:35 + ICE_CONFIG=/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/training_ice.config
01:45:35 + pip install --upgrade requests
01:45:36 Requirement already satisfied: requests in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (2.32.4)
01:45:36 Requirement already satisfied: charset_normalizer<4,>=2 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (3.4.2)
01:45:36 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (3.10)
01:45:36 Requirement already satisfied: urllib3<3,>=1.21.1 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (1.26.20)
01:45:36 Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages (from requests) (2025.4.26)
01:45:36 + python /home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/python
01:45:41 ERROR:omero.gateway:Failed to setPlane() on rawPixelsStore while creating Image
01:45:41 Traceback (most recent call last):
01:45:41   File "/home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages/omero/gateway/__init__.py", line 3852, in createImageFromNumpySeq
01:45:41     uploadPlane(plane, theZ, theC, theT, dtype)
01:45:41   File "/home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages/omero/gateway/__init__.py", line 3833, in uploadPlane
01:45:41     convertedPlane = byteSwappedPlane.tostring()
01:45:41                      ^^^^^^^^^^^^^^^^^^^^^^^^^
01:45:41 AttributeError: 'numpy.ndarray' object has no attribute 'tostring'
01:45:41 Traceback (most recent call last):
01:45:41   File "<frozen runpy>", line 198, in _run_module_as_main
01:45:41   File "<frozen runpy>", line 88, in _run_code
01:45:41   File "/home/omero/workspace/OMERO-training/openmicroscopy/examples/Training/python/__main__.py", line 17, in <module>
01:45:41     exec(open(os.path.join(training_dir, 'Create_Image.py')).read())
01:45:41   File "<string>", line 53, in <module>
01:45:41   File "/home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages/omero/gateway/__init__.py", line 3876, in createImageFromNumpySeq
01:45:41     raise exc
01:45:41   File "/home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages/omero/gateway/__init__.py", line 3852, in createImageFromNumpySeq
01:45:41     uploadPlane(plane, theZ, theC, theT, dtype)
01:45:41   File "/home/omero/workspace/OMERO-training/.venv3/lib64/python3.11/site-packages/omero/gateway/__init__.py", line 3833, in uploadPlane
01:45:41     convertedPlane = byteSwappedPlane.tostring()
01:45:41                      ^^^^^^^^^^^^^^^^^^^^^^^^^
01:45:41 AttributeError: 'numpy.ndarray' object has no attribute 'tostring'
01:45:41 Running training suite
01:45:41 created 20 shapes
01:45:41 retrieved 20 shapes in 4 batches
01:45:41 Current user:
01:45:41    ID: 2
01:45:41    Username: training_user
01:45:41    Full Name: training_user training_user
01:45:41    Is Admin: False
01:45:41 []
01:45:41 Member of:
01:45:41    ID: 3  Name: training_group
01:45:41    ID: 4  Name: training_group-2
01:45:41 Current group:  training_group
01:45:41    Group owners:
01:45:41    Group members:
01:45:41      ID: 3 UserName: training_user-2 Name: training_user-2 training_user-2
01:45:41      ID: 2 UserName: training_user Name: training_user training_user
01:45:41      ID: 4 UserName: ladmin_user Name: ladmin_user ladmin_user
01:45:41 Owner of:
01:45:41 Admins:
01:45:41    ID: 107 UserName: <hidden> Name: <hidden> <hidden>
01:45:41    ID: 119 UserName: <hidden> Name: <hidden> <hidden>
01:45:41    ID: 0 UserName: root Name: root root
01:45:41    ID: 4 UserName: ladmin_user Name: ladmin_user ladmin_user
01:45:41    ID: 113 UserName: <hidden> Name: <hidden> <hidden>
01:45:41 !! 06/11/25 01:45:41.457 error: 2 communicators not destroyed during global destruction.Build step 'Execute shell' marked build as failure
01:45:41 Finished: FAILURE