09:30:28 Started by user devspace
09:30:28 Running as SYSTEM
09:30:28 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-docs
09:30:28 The recommended git tool is: NONE
09:30:29 No credentials specified
09:30:29 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-docs/.git # timeout=10
09:30:29 Fetching changes from the remote Git repository
09:30:29 > git config remote.origin.url https://github.com/ome/ome-documentation # timeout=10
09:30:29 Fetching upstream changes from https://github.com/ome/ome-documentation
09:30:29 > git --version # timeout=10
09:30:29 > git --version # 'git version 2.43.5'
09:30:29 > git fetch --tags --force --progress -- https://github.com/ome/ome-documentation +refs/heads/*:refs/remotes/origin/* # timeout=10
09:30:29 > git rev-parse origin/develop^{commit} # timeout=10
09:30:29 Checking out Revision 2402b4973c5f0fc02fa6fb5de027cbd3924f9254 (origin/develop)
09:30:29 > git config core.sparsecheckout # timeout=10
09:30:29 > git checkout -f 2402b4973c5f0fc02fa6fb5de027cbd3924f9254 # timeout=10
09:30:29 Commit message: "Merge pull request #2463 from jburel/bump_version"
09:30:29 > git rev-list --no-walk 2402b4973c5f0fc02fa6fb5de027cbd3924f9254 # timeout=10
09:30:29 Cleaning workspace
09:30:29 > git rev-parse --verify HEAD # timeout=10
09:30:29 Resetting working tree
09:30:29 > git reset --hard # timeout=10
09:30:29 > git clean -fdx # timeout=10
09:30:29 [OMERO-docs] $ /bin/bash -xe /tmp/jenkins11054785370889173211.sh
09:30:29 + python3 -mvenv venv
09:30:32 + source /home/omero/workspace/OMERO-docs/venv/bin/activate
09:30:32 ++ deactivate nondestructive
09:30:32 ++ '[' -n '' ']'
09:30:32 ++ '[' -n '' ']'
09:30:32 ++ '[' -n /bin/bash -o -n '' ']'
09:30:32 ++ hash -r
09:30:32 ++ '[' -n '' ']'
09:30:32 ++ unset VIRTUAL_ENV
09:30:32 ++ '[' '!' nondestructive = nondestructive ']'
09:30:32 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-docs/venv
09:30:32 ++ export VIRTUAL_ENV
09:30:32 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:30:32 ++ PATH=/home/omero/workspace/OMERO-docs/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:30:32 ++ export PATH
09:30:32 ++ '[' -n '' ']'
09:30:32 ++ '[' -z '' ']'
09:30:32 ++ _OLD_VIRTUAL_PS1=
09:30:32 ++ PS1='(venv) '
09:30:32 ++ export PS1
09:30:32 ++ '[' -n /bin/bash -o -n '' ']'
09:30:32 ++ hash -r
09:30:32 + pip install -U pip
09:30:32 Requirement already satisfied: pip in ./venv/lib/python3.9/site-packages (21.2.3)
09:30:32 Collecting pip
09:30:32 Using cached pip-24.3.1-py3-none-any.whl (1.8 MB)
09:30:33 Installing collected packages: pip
09:30:33 Attempting uninstall: pip
09:30:33 Found existing installation: pip 21.2.3
09:30:33 Uninstalling pip-21.2.3:
09:30:33 Successfully uninstalled pip-21.2.3
09:30:34 Successfully installed pip-24.3.1
09:30:34 + pip install -U scc
09:30:34 Collecting scc
09:30:34 Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB)
09:30:34 Collecting PyGithub>=1.54 (from scc)
09:30:34 Using cached PyGithub-2.5.0-py3-none-any.whl.metadata (3.9 kB)
09:30:34 Collecting PyYAML>=5.1 (from scc)
09:30:34 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
09:30:34 Collecting future (from scc)
09:30:34 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
09:30:35 Collecting ruamel.yaml (from scc)
09:30:35 Using cached ruamel.yaml-0.18.6-py3-none-any.whl.metadata (23 kB)
09:30:35 Collecting ruamel.yaml.jinja2 (from scc)
09:30:35 Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB)
09:30:35 Collecting six (from scc)
09:30:35 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
09:30:35 Collecting urllib3<2 (from scc)
09:30:35 Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB)
09:30:35 Collecting yaclifw<0.3,>=0.2.0 (from scc)
09:30:35 Using cached yaclifw-0.2.0-py3-none-any.whl
09:30:35 Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc)
09:30:35 Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl.metadata (8.6 kB)
09:30:35 Collecting requests>=2.14.0 (from PyGithub>=1.54->scc)
09:30:35 Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB)
09:30:35 Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
09:30:35 Using cached PyJWT-2.10.1-py3-none-any.whl.metadata (4.0 kB)
09:30:35 Collecting typing-extensions>=4.0.0 (from PyGithub>=1.54->scc)
09:30:35 Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB)
09:30:35 Collecting Deprecated (from PyGithub>=1.54->scc)
09:30:35 Using cached Deprecated-1.2.15-py2.py3-none-any.whl.metadata (5.5 kB)
09:30:35 Collecting ruamel.yaml.clib>=0.2.7 (from ruamel.yaml->scc)
09:30:35 Using cached ruamel.yaml.clib-0.2.12-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.7 kB)
09:30:35 Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
09:30:35 Using cached cryptography-44.0.0-cp39-abi3-manylinux_2_34_x86_64.whl.metadata (5.7 kB)
09:30:36 Collecting cffi>=1.4.1 (from pynacl>=1.4.0->PyGithub>=1.54->scc)
09:30:36 Using cached cffi-1.17.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (1.5 kB)
09:30:36 Collecting charset-normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc)
09:30:36 Using cached charset_normalizer-3.4.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (34 kB)
09:30:36 Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc)
09:30:36 Using cached idna-3.10-py3-none-any.whl.metadata (10 kB)
09:30:36 Collecting certifi>=2017.4.17 (from requests>=2.14.0->PyGithub>=1.54->scc)
09:30:36 Using cached certifi-2024.8.30-py3-none-any.whl.metadata (2.2 kB)
09:30:36 Collecting wrapt<2,>=1.10 (from Deprecated->PyGithub>=1.54->scc)
09:30:36 Using cached wrapt-1.17.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.4 kB)
09:30:36 Collecting pycparser (from cffi>=1.4.1->pynacl>=1.4.0->PyGithub>=1.54->scc)
09:30:36 Using cached pycparser-2.22-py3-none-any.whl.metadata (943 bytes)
09:30:36 Using cached scc-0.20.0-py3-none-any.whl (48 kB)
09:30:36 Using cached PyGithub-2.5.0-py3-none-any.whl (375 kB)
09:30:36 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (737 kB)
09:30:36 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
09:30:36 Using cached future-1.0.0-py3-none-any.whl (491 kB)
09:30:36 Using cached ruamel.yaml-0.18.6-py3-none-any.whl (117 kB)
09:30:36 Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB)
09:30:36 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
09:30:36 Using cached PyJWT-2.10.1-py3-none-any.whl (22 kB)
09:30:36 Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (856 kB)
09:30:36 Using cached requests-2.32.3-py3-none-any.whl (64 kB)
09:30:36 Using cached ruamel.yaml.clib-0.2.12-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (724 kB)
09:30:36 Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB)
09:30:36 Using cached Deprecated-1.2.15-py2.py3-none-any.whl (9.9 kB)
09:30:36 Using cached certifi-2024.8.30-py3-none-any.whl (167 kB)
09:30:36 Using cached cffi-1.17.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (445 kB)
09:30:36 Using cached charset_normalizer-3.4.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (144 kB)
09:30:36 Using cached cryptography-44.0.0-cp39-abi3-manylinux_2_34_x86_64.whl (4.2 MB)
09:30:36 Using cached idna-3.10-py3-none-any.whl (70 kB)
09:30:36 Using cached wrapt-1.17.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (82 kB)
09:30:36 Using cached pycparser-2.22-py3-none-any.whl (117 kB)
09:30:36 Installing collected packages: wrapt, urllib3, typing-extensions, six, ruamel.yaml.clib, PyYAML, pyjwt, pycparser, idna, future, charset-normalizer, certifi, yaclifw, ruamel.yaml, requests, Deprecated, cffi, ruamel.yaml.jinja2, pynacl, cryptography, PyGithub, scc
09:30:38 Successfully installed Deprecated-1.2.15 PyGithub-2.5.0 PyYAML-6.0.2 certifi-2024.8.30 cffi-1.17.1 charset-normalizer-3.4.0 cryptography-44.0.0 future-1.0.0 idna-3.10 pycparser-2.22 pyjwt-2.10.1 pynacl-1.5.0 requests-2.32.3 ruamel.yaml-0.18.6 ruamel.yaml.clib-0.2.12 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.17.0 typing-extensions-4.12.2 urllib3-1.26.20 wrapt-1.17.0 yaclifw-0.2.0
09:30:38 + test -e src
09:30:38 + scc merge develop --no-ask --reset --comment -S success-only --push merge_ci
09:30:40 Following Github server redirection from /repos/ome/ome-documentation to /repositories/3198415
09:30:40 2024-12-09 09:30:40,006 [github.Reque] INFO Following Github server redirection from /repos/ome/ome-documentation to /repositories/3198415
09:30:42 2024-12-09 09:30:42,184 [ scc.merge] INFO Merging Pull Request(s) based on develop
09:30:42 2024-12-09 09:30:42,184 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
09:30:42 2024-12-09 09:30:42,184 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
09:30:42 2024-12-09 09:30:42,184 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
09:30:42 2024-12-09 09:30:42,184 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
09:30:42 2024-12-09 09:30:42,184 [ scc.merge] INFO Excluding Pull Request(s) without successful status
09:31:02 2024-12-09 09:31:02,428 [ scc.git] INFO - PR 2353 jburel 'Mencoder'
09:31:02 Conflicting PR. Removed from build [OMERO-docs#268](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-docs/268/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-docs/268/consoleText) for more details.
09:31:02 Possible conflicts:
09:31:02 - Upstream changes
09:31:02 - omero/sysadmins/omeromovie.rst
09:31:02
09:31:02 --conflicts
09:31:02
09:31:03 2024-12-09 09:31:03,666 [ scc.merge] INFO Repository: ome/ome-documentation
09:31:03 2024-12-09 09:31:03,666 [ scc.merge] INFO Excluded PRs:
09:31:03 2024-12-09 09:31:03,666 [ scc.merge] INFO - PR 2347 jburel 'pin version to match rtd ones' (exclude comment)
09:31:03 2024-12-09 09:31:03,666 [ scc.merge] INFO - PR 2298 pwalczysko 'test' (exclude comment)
09:31:03 2024-12-09 09:31:03,667 [ scc.merge] INFO - PR 2291 pwalczysko 'Add ansible and docker install doc - former "install.rst"' (status: failure)
09:31:03 2024-12-09 09:31:03,667 [ scc.merge] INFO Already up to date.
09:31:03 2024-12-09 09:31:03,667 [ scc.merge] INFO
09:31:03 2024-12-09 09:31:03,667 [ scc.merge] INFO Merged PRs:
09:31:03 2024-12-09 09:31:03,667 [ scc.merge] INFO - PR 2355 will-moore 'Update python Tables code to use 'Image' column'
09:31:03 2024-12-09 09:31:03,667 [ scc.merge] INFO - PR 2467 pwalczysko 'Fix outdated cli install for users'
09:31:03 2024-12-09 09:31:03,667 [ scc.merge] INFO - PR 2468 jburel 'Remove usage of the tag'
09:31:03 2024-12-09 09:31:03,667 [ scc.merge] INFO
09:31:03 2024-12-09 09:31:03,667 [ scc.merge] INFO Conflicting PRs (not included):
09:31:03 2024-12-09 09:31:03,667 [ scc.merge] INFO - PR 2353 jburel 'Mencoder'
09:31:03 2024-12-09 09:31:03,667 [ scc.merge] INFO
09:31:05 2024-12-09 09:31:05,899 [ scc.merge] INFO Merged branch pushed to https://github.com/snoopycrimecop/ome-documentation/tree/merge_ci
09:31:05 [OMERO-docs] $ /bin/bash -xe /tmp/jenkins5157722492876562936.sh
09:31:05 + source /home/omero/workspace/OMERO-docs/venv/bin/activate
09:31:05 ++ deactivate nondestructive
09:31:05 ++ '[' -n '' ']'
09:31:05 ++ '[' -n '' ']'
09:31:05 ++ '[' -n /bin/bash -o -n '' ']'
09:31:05 ++ hash -r
09:31:05 ++ '[' -n '' ']'
09:31:05 ++ unset VIRTUAL_ENV
09:31:05 ++ '[' '!' nondestructive = nondestructive ']'
09:31:05 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-docs/venv
09:31:05 ++ export VIRTUAL_ENV
09:31:05 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:31:05 ++ PATH=/home/omero/workspace/OMERO-docs/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
09:31:05 ++ export PATH
09:31:05 ++ '[' -n '' ']'
09:31:05 ++ '[' -z '' ']'
09:31:05 ++ _OLD_VIRTUAL_PS1=
09:31:05 ++ PS1='(venv) '
09:31:05 ++ export PS1
09:31:05 ++ '[' -n /bin/bash -o -n '' ']'
09:31:05 ++ hash -r
09:31:05 + pip install -r requirements.txt
09:31:06 Collecting sphinx==5.3.0 (from -r requirements.txt (line 1))
09:31:06 Using cached sphinx-5.3.0-py3-none-any.whl.metadata (6.4 kB)
09:31:06 Collecting sphinx_rtd_theme==1.1.1 (from -r requirements.txt (line 2))
09:31:06 Using cached sphinx_rtd_theme-1.1.1-py2.py3-none-any.whl.metadata (4.4 kB)
09:31:06 Collecting sphinxcontrib-applehelp (from sphinx==5.3.0->-r requirements.txt (line 1))
09:31:06 Using cached sphinxcontrib_applehelp-2.0.0-py3-none-any.whl.metadata (2.3 kB)
09:31:06 Collecting sphinxcontrib-devhelp (from sphinx==5.3.0->-r requirements.txt (line 1))
09:31:06 Using cached sphinxcontrib_devhelp-2.0.0-py3-none-any.whl.metadata (2.3 kB)
09:31:06 Collecting sphinxcontrib-jsmath (from sphinx==5.3.0->-r requirements.txt (line 1))
09:31:06 Using cached sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl.metadata (1.4 kB)
09:31:06 Collecting sphinxcontrib-htmlhelp>=2.0.0 (from sphinx==5.3.0->-r requirements.txt (line 1))
09:31:06 Using cached sphinxcontrib_htmlhelp-2.1.0-py3-none-any.whl.metadata (2.3 kB)
09:31:06 Collecting sphinxcontrib-serializinghtml>=1.1.5 (from sphinx==5.3.0->-r requirements.txt (line 1))
09:31:06 Using cached sphinxcontrib_serializinghtml-2.0.0-py3-none-any.whl.metadata (2.4 kB)
09:31:06 Collecting sphinxcontrib-qthelp (from sphinx==5.3.0->-r requirements.txt (line 1))
09:31:06 Using cached sphinxcontrib_qthelp-2.0.0-py3-none-any.whl.metadata (2.3 kB)
09:31:06 Collecting Jinja2>=3.0 (from sphinx==5.3.0->-r requirements.txt (line 1))
09:31:06 Using cached jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB)
09:31:06 Collecting Pygments>=2.12 (from sphinx==5.3.0->-r requirements.txt (line 1))
09:31:06 Using cached pygments-2.18.0-py3-none-any.whl.metadata (2.5 kB)
09:31:06 Collecting docutils<0.20,>=0.14 (from sphinx==5.3.0->-r requirements.txt (line 1))
09:31:06 Using cached docutils-0.19-py3-none-any.whl.metadata (2.7 kB)
09:31:06 Collecting snowballstemmer>=2.0 (from sphinx==5.3.0->-r requirements.txt (line 1))
09:31:06 Using cached snowballstemmer-2.2.0-py2.py3-none-any.whl.metadata (6.5 kB)
09:31:06 Collecting babel>=2.9 (from sphinx==5.3.0->-r requirements.txt (line 1))
09:31:06 Using cached babel-2.16.0-py3-none-any.whl.metadata (1.5 kB)
09:31:06 Collecting alabaster<0.8,>=0.7 (from sphinx==5.3.0->-r requirements.txt (line 1))
09:31:06 Using cached alabaster-0.7.16-py3-none-any.whl.metadata (2.9 kB)
09:31:06 Collecting imagesize>=1.3 (from sphinx==5.3.0->-r requirements.txt (line 1))
09:31:06 Using cached imagesize-1.4.1-py2.py3-none-any.whl.metadata (1.5 kB)
09:31:06 Requirement already satisfied: requests>=2.5.0 in ./venv/lib/python3.9/site-packages (from sphinx==5.3.0->-r requirements.txt (line 1)) (2.32.3)
09:31:06 Collecting packaging>=21.0 (from sphinx==5.3.0->-r requirements.txt (line 1))
09:31:06 Using cached packaging-24.2-py3-none-any.whl.metadata (3.2 kB)
09:31:06 Collecting importlib-metadata>=4.8 (from sphinx==5.3.0->-r requirements.txt (line 1))
09:31:06 Using cached importlib_metadata-8.5.0-py3-none-any.whl.metadata (4.8 kB)
09:31:06 Collecting docutils<0.20,>=0.14 (from sphinx==5.3.0->-r requirements.txt (line 1))
09:31:06 Using cached docutils-0.17.1-py2.py3-none-any.whl.metadata (2.9 kB)
09:31:07 Collecting zipp>=3.20 (from importlib-metadata>=4.8->sphinx==5.3.0->-r requirements.txt (line 1))
09:31:07 Using cached zipp-3.21.0-py3-none-any.whl.metadata (3.7 kB)
09:31:07 Collecting MarkupSafe>=2.0 (from Jinja2>=3.0->sphinx==5.3.0->-r requirements.txt (line 1))
09:31:07 Using cached MarkupSafe-3.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.0 kB)
09:31:07 Requirement already satisfied: charset-normalizer<4,>=2 in ./venv/lib/python3.9/site-packages (from requests>=2.5.0->sphinx==5.3.0->-r requirements.txt (line 1)) (3.4.0)
09:31:07 Requirement already satisfied: idna<4,>=2.5 in ./venv/lib/python3.9/site-packages (from requests>=2.5.0->sphinx==5.3.0->-r requirements.txt (line 1)) (3.10)
09:31:07 Requirement already satisfied: urllib3<3,>=1.21.1 in ./venv/lib/python3.9/site-packages (from requests>=2.5.0->sphinx==5.3.0->-r requirements.txt (line 1)) (1.26.20)
09:31:07 Requirement already satisfied: certifi>=2017.4.17 in ./venv/lib/python3.9/site-packages (from requests>=2.5.0->sphinx==5.3.0->-r requirements.txt (line 1)) (2024.8.30)
09:31:07 Using cached sphinx-5.3.0-py3-none-any.whl (3.2 MB)
09:31:07 Using cached sphinx_rtd_theme-1.1.1-py2.py3-none-any.whl (2.8 MB)
09:31:07 Using cached alabaster-0.7.16-py3-none-any.whl (13 kB)
09:31:07 Using cached babel-2.16.0-py3-none-any.whl (9.6 MB)
09:31:07 Using cached docutils-0.17.1-py2.py3-none-any.whl (575 kB)
09:31:07 Using cached imagesize-1.4.1-py2.py3-none-any.whl (8.8 kB)
09:31:07 Using cached importlib_metadata-8.5.0-py3-none-any.whl (26 kB)
09:31:07 Using cached jinja2-3.1.4-py3-none-any.whl (133 kB)
09:31:07 Using cached packaging-24.2-py3-none-any.whl (65 kB)
09:31:07 Using cached pygments-2.18.0-py3-none-any.whl (1.2 MB)
09:31:07 Using cached snowballstemmer-2.2.0-py2.py3-none-any.whl (93 kB)
09:31:07 Using cached sphinxcontrib_htmlhelp-2.1.0-py3-none-any.whl (98 kB)
09:31:07 Using cached sphinxcontrib_serializinghtml-2.0.0-py3-none-any.whl (92 kB)
09:31:07 Using cached sphinxcontrib_applehelp-2.0.0-py3-none-any.whl (119 kB)
09:31:07 Using cached sphinxcontrib_devhelp-2.0.0-py3-none-any.whl (82 kB)
09:31:07 Using cached sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl (5.1 kB)
09:31:07 Using cached sphinxcontrib_qthelp-2.0.0-py3-none-any.whl (88 kB)
09:31:07 Using cached MarkupSafe-3.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (20 kB)
09:31:07 Using cached zipp-3.21.0-py3-none-any.whl (9.6 kB)
09:31:07 Installing collected packages: snowballstemmer, zipp, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, Pygments, packaging, MarkupSafe, imagesize, docutils, babel, alabaster, Jinja2, importlib-metadata, sphinx, sphinx_rtd_theme
09:31:09 Successfully installed Jinja2-3.1.4 MarkupSafe-3.0.2 Pygments-2.18.0 alabaster-0.7.16 babel-2.16.0 docutils-0.17.1 imagesize-1.4.1 importlib-metadata-8.5.0 packaging-24.2 snowballstemmer-2.2.0 sphinx-5.3.0 sphinx_rtd_theme-1.1.1 sphinxcontrib-applehelp-2.0.0 sphinxcontrib-devhelp-2.0.0 sphinxcontrib-htmlhelp-2.1.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-2.0.0 sphinxcontrib-serializinghtml-2.0.0 zipp-3.21.0
09:31:10 + cd omero
09:31:10 + make clean html linkcheck
09:31:10 rm -rf _build/*
09:31:10 sphinx-build -b html -d _build/doctrees . _build/html
09:31:10 Running Sphinx v5.3.0
09:31:10 making output directory... done
09:31:10 building [mo]: targets for 0 po files that are out of date
09:31:10 building [html]: targets for 159 source files that are out of date
09:31:10 updating environment: [new config] 159 added, 0 changed, 0 removed
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09:31:54 (developers/Tables: line 384) redirect https://docs.openmicroscopy.org/latest/ome-model/developers/screen-plate-well.html - with Found to https://ome-model.readthedocs.io/en/stable/developers/screen-plate-well.html
09:31:54 (developers/GettingStarted/AdvancedClientDevelopment: line 366) redirect https://docs.openmicroscopy.org/latest/ome-model/ome-xml/ - with Found to https://ome-model.readthedocs.io/en/stable/ome-xml/
09:31:54 (developers/Model/Containers: line 8) redirect https://docs.openmicroscopy.org/latest/ome-model/schemas/june-2016.html - with Found to https://ome-model.readthedocs.io/en/stable/schemas/june-2016.html
09:31:54 (developers/Server/SecuritySystem: line 38) ok https://docs.jboss.org/hibernate/core/3.6/reference/en-US/html/filters.html
09:31:54 ( index: line 35) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/javadoc/
09:31:54 (sysadmins/server-upgrade: line 17) redirect https://docs.openmicroscopy.org/latest/omero5.5/sysadmins/server-upgrade.html - with Found to https://docs.openmicroscopy.org/omero/5.5.1/sysadmins/server-upgrade.html
09:31:54 ( sysadmins/index: line 15) redirect https://docs.openmicroscopy.org/latest/ome-model/specifications/ - with Found to https://ome-model.readthedocs.io/en/stable/specifications/
09:31:54 (developers/Server/LightAdmins: line 204) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/javadoc/ome/services/blitz/repo/RepositoryDaoImpl.html
09:31:55 (sysadmins/config: line 1664) redirect https://docs.openmicroscopy.org/latest/omero/sysadmins/customization.html#download-restrictions - with Found to https://omero.readthedocs.io/en/stable/sysadmins/customization.html#download-restrictions
09:31:55 (developers/Server/GraphsImpl: line 70) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/javadoc/omero/cmd/graphs/BaseGraphPolicyAdjuster.html
09:31:55 (developers/Server/GraphsImpl: line 100) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/javadoc/omero/cmd/graphs/GraphRequestFactory.html
09:31:55 (developers/Server/GraphsImpl: line 48) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/javadoc/omero/cmd/graphs/BaseGraphTraversalProcessor.html
09:31:55 (developers/Server/GraphsImpl: line 77) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/javadoc/omero/cmd/graphs/ChildOptionsPolicy.html
09:31:55 (developers/Server/GraphsImpl: line 100) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/javadoc/omero/cmd/graphs/GraphHelper.html
09:31:55 (developers/Server/GraphsImpl: line 48) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/javadoc/omero/cmd/graphs/NullGraphTraversalProcessor.html
09:31:55 (developers/Server/GraphsImpl: line 83) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/javadoc/omero/cmd/graphs/SkipHeadPolicy.html
09:31:55 (developers/Server/GraphsImpl: line 86) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/javadoc/omero/cmd/graphs/SkipTailPolicy.html
09:31:55 (developers/Server/GraphsImpl: line 100) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/javadoc/omero/cmd/graphs/GraphUtil.html
09:31:55 (developers/Model/Units: line 16) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/javadoc/omero/model/ElectricPotentialI.html
09:31:55 (developers/Model/Units: line 17) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/javadoc/omero/model/FrequencyI.html
09:31:55 (developers/Model/Units: line 19) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/javadoc/omero/model/PowerI.html
09:31:55 (developers/Model/Units: line 21) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/javadoc/omero/model/TemperatureI.html
09:31:55 ( index: line 35) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/
09:31:55 (developers/Modules/Api: line 126) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/api.html
09:31:55 (developers/Model/Units: line 20) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/javadoc/omero/model/PressureI.html
09:31:55 (developers/Model/Units: line 18) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/javadoc/omero/model/LengthI.html
09:31:55 (developers/Modules/Api: line 45) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/api/IAdmin.html
09:31:55 (developers/Modules/Api: line 50) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/api/IConfig.html
09:31:55 (developers/Modules/Api: line 54) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/api/IContainer.html
09:31:55 (developers/Model/Units: line 22) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/javadoc/omero/model/TimeI.html
09:31:55 (developers/Modules/Api: line 57) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/api/ILdap.html
09:31:55 (developers/Modules/Api: line 61) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/api/IMetadata.html
09:31:55 (developers/Modules/Api: line 67) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/api/IProjection.html
09:31:55 (developers/Modules/Api: line 64) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/api/IPixels.html
09:31:55 (developers/Modules/Api: line 70) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/api/IQuery.html
09:31:55 (developers/Modules/Api: line 74) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/api/IRenderingSettings.html
09:31:55 (developers/GettingStarted/AdvancedClientDevelopment: line 477) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/api/IQuery.html#projection
09:31:55 (developers/Modules/Api: line 83) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/api/IScript.html
09:31:55 (developers/Modules/Api: line 80) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/api/IRoi.html
09:31:55 (developers/Modules/Api: line 77) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/api/IRepositoryInfo.html
09:31:55 (developers/Modules/Api: line 86) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/api/ISession.html
09:31:55 (developers/Modules/Api: line 89) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/api/IShare.html
09:31:55 (developers/Modules/Api: line 91) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/api/ITimeline.html
09:31:55 (developers/Modules/Api: line 94) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/api/ITypes.html
09:31:55 (developers/Modules/Api: line 97) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/api/IUpdate.html
09:31:55 (developers/Modules/Api: line 114) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/api/RawPixelsStore.html
09:31:55 (developers/Modules/Api: line 117) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/api/RenderingEngine.html
09:31:55 (developers/Modules/Api: line 16) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/api/ServiceFactory.html
09:31:55 (developers/Modules/Api: line 111) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/api/RawFileStore.html
09:31:55 (developers/Modules/Api: line 121) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/api/ThumbnailStore.html
09:31:55 (developers/PythonBlitzGateway: line 111) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/api/ServiceFactory.html#getQueryService
09:31:55 (developers/PythonBlitzGateway: line 111) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/api/ServiceFactory.html#createRenderingEngine
09:31:55 (developers/Server/GraphRequests: line 75) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/cmd/Chgrp2.html
09:31:55 (developers/Server/GraphRequests: line 79) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/cmd/Chown2.html
09:31:55 (developers/Server/GraphRequests: line 27) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/cmd/DiskUsage2.html
09:31:55 (developers/Server/GraphRequests: line 88) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/cmd/Delete2.html
09:31:55 (developers/Server/GraphRequests: line 96) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/cmd/Duplicate.html
09:31:55 (developers/Server/GraphRequests: line 83) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/cmd/Chmod2.html
09:31:55 (developers/Server/GraphRequests: line 42) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/cmd/FindChildren.html
09:31:55 (developers/Server/GraphRequests: line 59) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/cmd/GraphModify2.html
09:31:55 (developers/Server/GraphRequests: line 34) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/cmd/FindParents.html
09:31:55 (developers/Server/GraphRequests: line 6) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/cmd/GraphQuery.html
09:31:55 (developers/Server/GraphRequests: line 18) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/cmd/LegalGraphTargets.html
09:31:55 (developers/Server/GraphRequests: line 71) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/cmd/graphs/ChildOption.html
09:31:55 (developers/GettingStarted: line 136) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/model.html
09:31:55 (developers/Tables: line 343) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/grid/Table.html
09:31:55 (developers/Server/GraphRequests: line 104) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/cmd/SkipHead.html
09:31:55 (developers/Server/LightAdmins: line 22) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/model/AdminPrivilege.html
09:31:55 (developers/GettingStarted: line 179) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/model/Channel.html
09:31:55 (developers/GettingStarted: line 161) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/model/CommentAnnotation.html
09:31:55 (developers/GettingStarted: line 150) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/model/Dataset.html
09:31:55 (developers/GettingStarted: line 161) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/model/Annotation.html
09:31:55 (developers/GettingStarted: line 161) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/model/DatasetAnnotationLink.html
09:31:55 (developers/GettingStarted: line 161) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/model/FileAnnotation.html
09:31:55 (developers/GettingStarted: line 150) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/model/DatasetImageLink.html
09:31:55 (developers/Server/Permissions: line 380) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/model/Permissions.html#canAnnotate
09:31:55 (developers/Server/Permissions: line 381) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/model/Permissions.html#canChgrp
09:31:55 (developers/GettingStarted: line 150) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/model/Image.html
09:31:55 (developers/Server/Permissions: line 382) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/model/Permissions.html#canChown
09:31:55 (developers/Server/Permissions: line 383) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/model/Permissions.html#canDelete
09:31:55 (developers/GettingStarted: line 150) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/model/Project.html
09:31:55 (developers/Server/Permissions: line 385) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/model/Permissions.html#canLink
09:31:55 (developers/Server/Permissions: line 384) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/model/Permissions.html#canEdit
09:31:55 (developers/GettingStarted: line 179) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/model/Pixels.html
09:31:55 (developers/GettingStarted: line 161) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/model/ProjectAnnotationLink.html
09:31:55 (developers/GettingStarted: line 150) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/model/ProjectDatasetLink.html
09:31:55 (developers/Server/LightAdmins: line 160) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/sys/EventContext.html
09:31:55 (developers/Model/EveryObject: line 24) ok https://docs.openmicroscopy.org/omero-model/5.7.0/javadoc/ome/model/IEnum.html
09:31:55 ( developers/Java: line 57) ok https://docs.openmicroscopy.org/omero-gateway/5.10.0/javadoc/omero/gateway/model/DataObject.html
09:31:55 ( developers/Java: line 52) ok https://docs.openmicroscopy.org/omero-gateway/5.10.0/javadoc/omero/gateway/facility/BrowseFacility.html
09:31:55 ( developers/Java: line 52) ok https://docs.openmicroscopy.org/omero-gateway/5.10.0/javadoc//omero/gateway/facility/package-summary.html
09:31:55 ( developers/Java: line 44) ok https://docs.openmicroscopy.org/omero-gateway/5.10.0/javadoc/omero/gateway/Gateway.html
09:31:55 (developers/Model/EveryObject: line 92) ok https://docs.openmicroscopy.org/omero-model/5.7.0/javadoc/ome/model/ILink.html
09:31:55 (developers/Model/EveryObject: line 54) ok https://docs.openmicroscopy.org/omero-model/5.7.0/javadoc/ome/model/IMutable.html
09:31:55 (developers/Model/EveryObject: line 114) ok https://docs.openmicroscopy.org/omero-model/5.7.0/javadoc/ome/model/units/Power.html
09:31:55 (developers/Model/EveryObject: line 580) ok https://docs.openmicroscopy.org/omero-model/5.7.0/javadoc/ome/model/units/Length.html
09:31:55 (developers/Model/EveryObject: line 467) ok https://docs.openmicroscopy.org/omero-model/5.7.0/javadoc/ome/model/units/Frequency.html
09:31:55 (developers/Model/EveryObject: line 425) ok https://docs.openmicroscopy.org/omero-model/5.7.0/javadoc/ome/model/units/ElectricPotential.html
09:31:55 (developers/Model/EveryObject: line 1190) ok https://docs.openmicroscopy.org/omero-model/5.7.0/javadoc/ome/model/units/Pressure.html
09:31:55 (developers/Model/EveryObject: line 1190) ok https://docs.openmicroscopy.org/omero-model/5.7.0/javadoc/ome/model/units/Temperature.html
09:31:55 (developers/Model/EveryObject: line 2238) ok https://docs.openmicroscopy.org/omero-model/5.7.0/javadoc/ome/model/units/Time.html
09:31:55 (developers/Server/LightAdmins: line 219) ok https://docs.openmicroscopy.org/omero-server/5.7.0/javadoc/ome/logic/AdminImpl.html
09:31:55 (developers/Server/LightAdmins: line 219) ok https://docs.openmicroscopy.org/omero-server/5.7.0/javadoc/ome/security/basic/BasicACLVoter.html
09:31:55 (developers/Server/LightAdmins: line 242) ok https://docs.openmicroscopy.org/omero-server/5.7.0/javadoc/ome/security/basic/LightAdminPrivilegesCleanup.html
09:31:55 (developers/Server/LightAdmins: line 102) ok https://docs.openmicroscopy.org/omero-server/5.7.0/javadoc/ome/security/basic/LightAdminPrivilegesSecurityFilter.html
09:31:55 (developers/Server/LightAdmins: line 219) ok https://docs.openmicroscopy.org/omero-server/5.7.0/javadoc/ome/security/basic/OmeroInterceptor.html
09:31:55 (developers/Server/GraphsImpl: line 11) ok https://docs.openmicroscopy.org/omero-server/5.7.0/javadoc/ome/services/graphs/GraphPathBean.html
09:31:55 (developers/Server/GraphsImpl: line 11) ok https://docs.openmicroscopy.org/omero-server/5.7.0/javadoc/ome/services/graphs/GraphPathReport.html
09:31:55 (developers/Server/GraphsImpl: line 60) ok https://docs.openmicroscopy.org/omero-server/5.7.0/javadoc/ome/services/graphs/GraphPolicyRule.html
09:31:55 (developers/Server/GraphsImpl: line 60) ok https://docs.openmicroscopy.org/omero-server/5.7.0/javadoc/ome/services/graphs/GraphPolicy.html
09:31:55 (developers/Server/GraphsImpl: line 88) ok https://docs.openmicroscopy.org/omero-server/5.7.0/javadoc/ome/services/graphs/GraphPolicyRulePredicate.html
09:31:55 (developers/Server/GraphsImpl: line 32) ok https://docs.openmicroscopy.org/omero-server/5.7.0/javadoc/ome/services/graphs/GraphTraversal.Processor.html
09:31:55 (developers/Server/GraphsImpl: line 32) ok https://docs.openmicroscopy.org/omero-server/5.7.0/javadoc/ome/services/graphs/GraphTraversal.PlanExecutor.html
09:31:55 (developers/Server/GraphsImpl: line 22) ok https://docs.openmicroscopy.org/omero-server/5.7.0/javadoc/ome/services/graphs/GraphTraversal.html
09:31:55 (developers/Server/GraphsImpl: line 88) ok https://docs.openmicroscopy.org/omero-server/5.7.0/javadoc/ome/services/graphs/GroupPredicate.html
09:31:55 (developers/Server/GraphsImpl: line 42) ok https://docs.openmicroscopy.org/omero-server/5.7.0/javadoc/ome/services/graphs/ModelObjectSequencer.html
09:31:55 (developers/Server/LightAdmins: line 236) ok https://docs.openmicroscopy.org/omero-server/5.7.0/javadoc/ome/services/util/DBUserCheck.html
09:31:55 (developers/Server/GraphsImpl: line 88) ok https://docs.openmicroscopy.org/omero-server/5.7.0/javadoc/ome/services/graphs/PermissionsPredicate.html
09:31:55 (sysadmins/whatsnew: line 16) redirect https://docs.openmicroscopy.org/omero/5.5/sysadmins/whatsnew.html - with Found to https://docs.openmicroscopy.org/omero/5.5.1/sysadmins/whatsnew.html
09:31:55 ( users/history: line 1053) ok https://docs.openmicroscopy.org/omero/5.3.0/developers/whatsnew.html
09:31:55 (sysadmins/config: line 2205) redirect https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples - with Found to https://omero.readthedocs.io/en/stable/sysadmins/grid.html#deployment-examples
09:31:55 (sysadmins/config: line 811) ok https://docs.oracle.com/javase/jndi/tutorial/ldap/connect/create.html
09:31:55 (developers/Modules/Api: line 223) ok https://docs.oracle.com/javase/tutorial/java/annotations/basics.html
09:31:55 (users/cli/import-target: line 157) ok https://docs.oracle.com/javase/7/docs/api/java/util/regex/Pattern.html
09:31:55 (sysadmins/server-ldap: line 318) ok https://docs.oracle.com/javase/jndi/tutorial/ldap/referral/jndi.html
09:31:55 (sysadmins/config: line 924) ok https://docs.oracle.com/javase/tutorial/jndi/newstuff/readtimeout.html
09:31:56 (developers/testing: line 45) ok https://docs.pytest.org/en/latest/
09:31:56 (sysadmins/dropbox: line 152) ok https://docs.python.org/2.7/library/site.html
09:31:56 (developers/testing: line 342) ok https://docs.pytest.org/en/latest/how-to/usage.html
09:31:56 (sysadmins/config: line 1011) ok https://docs.python.org/3/library/logging.html#levels
09:31:56 (sysadmins/python3-migration: line 84) ok https://downloads.openmicroscopy.org
09:31:56 (sysadmins/UpgradeCheck: line 29) redirect https://downloads.openmicroscopy.org/latest/omero - permanently to https://downloads.openmicroscopy.org/omero/5.6.14/
09:31:56 (sysadmins/unix/server-install-homebrew: line 204) redirect https://downloads.openmicroscopy.org/latest/omero/artifacts/ - with Found to https://downloads.openmicroscopy.org/omero/5.6.14/artifacts/
09:31:56 (sysadmins/version-requirements: line 248) ok https://download.postgresql.org/pub/repos/yum/12/redhat/rhel-9-x86_64/
09:31:56 (developers/GettingStarted: line 56) redirect https://downloads.openmicroscopy.org/latest/omero5.5/ - with Found to https://downloads.openmicroscopy.org/omero/5.5.1/
09:31:56 (developers/analysis: line 12) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/ - with Found to https://downloads.openmicroscopy.org/omero/5.5.1/api/
09:31:56 ( index: line 35) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/ - with Found to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/
09:31:56 (developers/PythonBlitzGateway: line 91) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/omero/omero.gateway.html - with Found to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/omero/omero.gateway.html
09:31:56 (developers/PythonBlitzGateway: line 171) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/omero/omero.gateway.html#omero.gateway.ImageWrapper - with Found to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/omero/omero.gateway.html#omero.gateway.ImageWrapper
09:31:56 (sysadmins/version-requirements: line 195) ok https://download.rockylinux.org/pub/rocky/9/BaseOS/x86_64/os/Packages/
09:31:56 (developers/PythonBlitzGateway: line 19) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/omero/omero.gateway.html#omero.gateway._BlitzGateway - with Found to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/omero/omero.gateway.html#omero.gateway._BlitzGateway
09:31:56 (developers/PythonBlitzGateway: line 123) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/omero/omero.gateway.html#omero.gateway._BlitzGateway._createProxies - with Found to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/omero/omero.gateway.html#omero.gateway._BlitzGateway._createProxies
09:31:56 (developers/Server/Aop: line 77) redirect https://docs.spring.io/spring/docs/2.0.x/reference/aop.html - permanently to https://docs.spring.io/spring-framework/docs/2.0.x/reference/aop.html
09:31:56 (developers/Server/HowToCreateAService: line 101) redirect https://docs.spring.io/spring/docs/2.0.x/reference/beans.html#beans-factory-scopes-singleton - permanently to https://docs.spring.io/spring-framework/docs/2.0.x/reference/beans.html#beans-factory-scopes-singleton
09:31:56 (developers/Web/WebGateway: line 15) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/omeroweb/omeroweb.webgateway.html#module-omeroweb.webgateway.urls - with Found to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/omeroweb/omeroweb.webgateway.html#module-omeroweb.webgateway.urls
09:31:56 (developers/GettingStarted/AdvancedClientDevelopment: line 477) ok https://downloads.openmicroscopy.org/presentations/2017/Team-Training/Hibernate/
09:31:56 (developers/Server/Aop: line 86) ok https://en.wikipedia.org/wiki/Aspect-oriented_programming
09:31:56 (sysadmins/server-ldap: line 322) ok https://en.wikipedia.org/wiki/Active_Directory
09:31:56 (developers/GettingStarted/AdvancedClientDevelopment: line 56) ok https://en.wikipedia.org/wiki/Fallacies_of_Distributed_Computing
09:31:56 (developers/GettingStarted/AdvancedClientDevelopment: line 78) ok https://en.wikipedia.org/wiki/Interface_description_language
09:31:56 (sysadmins/in-place-import: line 288) ok https://en.wikipedia.org/wiki/Hard_link
09:31:56 (developers/Model/Units: line 185) ok https://en.wikipedia.org/wiki/International_System_of_Units
09:31:56 (sysadmins/server-backup-and-restore: line 216) ok https://en.wikipedia.org/wiki/List_of_backup_software
09:31:56 (sysadmins/server-ldap: line 4) ok https://en.wikipedia.org/wiki/Lightweight_Directory_Access_Protocol
09:31:56 (sysadmins/config: line 2835) ok https://en.wikipedia.org/wiki/List_of_tz_database_time_zones
09:31:56 (sysadmins/server-syslog: line 4) ok https://en.wikipedia.org/wiki/Syslog
09:31:56 (developers/Model/Units: line 184) ok https://en.wikipedia.org/wiki/System_of_measurement
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09:31:57 (sysadmins/version-requirements: line 103) ok https://endoflife.date/centos
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09:31:57 (sysadmins/python3-migration: line 52) ok https://galaxy.ansible.com/ome
09:31:57 (sysadmins/limitations: line 49) ok https://forum.image.sc/t/pixeldata-threads-and-pyramid-generation-issues/49794
09:31:57 (sysadmins/system-migration: line 33) ok https://galaxy.ansible.com/ui/standalone/namespaces/5249/
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09:31:57 (sysadmins/system-migration: line 33) ok https://galaxy.ansible.com/ui/standalone/roles/ome/omero_server/
09:31:57 (sysadmins/system-migration: line 33) ok https://galaxy.ansible.com/ui/standalone/roles/ome/omero_web/
09:31:57 (sysadmins/system-migration: line 39) ok https://forum.image.sc/tag/omero
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09:31:58 (sysadmins/limitations: line 61) ok https://github.com/AllenCellModeling/aicsimageio
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09:31:58 (sysadmins/limitations: line 61) ok https://github.com/BIOP/ijp-kheops
09:31:58 ( developers/Web: line 73) ok https://github.com/German-BioImaging/omero-autotag
09:31:58 ( developers/Web: line 73) ok https://github.com/German-BioImaging/omero-tagsearch
09:31:58 (developers/Tables: line 18) ok https://github.com/PyTables/PyTables/releases/tag/v3.9.1
09:31:58 (developers/Python: line 60) ok https://github.com/TheJacksonLaboratory/ezomero
09:31:58 (developers/scripts/index: line 55) ok https://github.com/QBI-Microscopy/omero-user-scripts
09:31:58 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 173) ok https://github.com/adamchainz/django-cors-headers
09:31:59 (developers/scripts/index: line 53) ok https://github.com/aherbert/omero-user-scripts
09:31:59 (developers/scripts/index: line 57) ok https://github.com/dsudar/OMEROscripts
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09:31:59 (developers/Python: line 21) redirect https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl - with Found to https://objects.githubusercontent.com/github-production-release-asset-2e65be/543662060/9ce94eef-3ec3-4651-a4ac-af4ecb7b5d87?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=releaseassetproduction%2F20241209%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20241209T093159Z&X-Amz-Expires=300&X-Amz-Signature=91e8f63a6b2c93220c125b635d560e0dc4f30498403d847a2fe0ab92957a65a2&X-Amz-SignedHeaders=host&response-content-disposition=attachment%3B%20filename%3Dzeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl&response-content-type=application%2Foctet-stream
09:31:59 (sysadmins/server-upgrade: line 75) redirect https://github.com/glencoesoftware/omero-ms-image-region/tree/v0.5.1/src/dist/MemoFileRegenerationReadMe.md - permanently to https://github.com/glencoesoftware/omero-ms-image-region/blob/v0.5.1/src/dist/MemoFileRegenerationReadMe.md
09:31:59 (sysadmins/version-requirements: line 387) ok https://github.com/glencoesoftware/zeroc-ice-rhel9-x86_64
09:31:59 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 230) ok https://github.com/jazzband/django-redis
09:31:59 (sysadmins/version-requirements: line 388) ok https://github.com/glencoesoftware/zeroc-ice-ubuntu2204-x86_64
09:32:00 (sysadmins/limitations: line 61) ok https://github.com/libvips/libvips
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09:32:00 (sysadmins/unix/server-install-homebrew: line 382) redirect https://github.com/mxcl/homebrew/wiki/Bug-Fixing-Checklist - with Found to https://github.com/Homebrew/legacy-homebrew
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09:32:00 ( users/history: line 426) ok https://gradle.org
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09:32:00 (developers/scripts/index: line 51) ok https://github.com/ppouchin/omero-user-scripts
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09:32:01 (developers/logging: line 32) ok https://logback.qos.ch/manual/configuration.html#autoScan
09:32:01 (sysadmins/limitations: line 107) ok https://ngff.openmicroscopy.org/latest/
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09:32:01 (sysadmins/version-requirements: line 454) ok https://nginx.org/en/download.html
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09:32:02 (sysadmins/restricted-admins: line 191) ok https://omero-guides.readthedocs.io/en/latest/upload/docs/import-desktop-client.html#import-for-another-user
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09:32:02 (developers/index: line 131) ok https://omero-insight.readthedocs.io/en/latest/
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09:32:02 (developers/Search/FileParsers: line 24) ok https://pdfbox.apache.org
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09:32:06 (sysadmins/unix/server-installation: line 472) ok https://www.openmicroscopy.org/community/viewtopic.php?f=5&t=360#p922
09:32:06 (sysadmins/troubleshooting: line 282) ok https://www.openmicroscopy.org/community/viewtopic.php?f=5&t=7537
09:32:06 (sysadmins/server-upgrade: line 256) ok https://www.openmicroscopy.org/community/viewtopic.php?f=5&t=7778
09:32:06 (sysadmins/troubleshooting: line 284) ok https://www.openmicroscopy.org/community/viewtopic.php?f=6&t=7722&p=15264&hilit=CheckedPath#p15264
09:32:06 ( users/index: line 59) ok https://www.openmicroscopy.org/explore/
09:32:06 (sysadmins/server-backup-and-restore: line 162) redirect https://www.nongnu.org/rdiff-backup/docs.html - with Found to https://rdiff-backup.net/
09:32:06 (users/clients-overview: line 28) ok https://www.openmicroscopy.org/omero/analyze
09:32:06 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 77) ok https://www.openmicroscopy.org/omero/apps/
09:32:06 (developers/Matlab: line 12) ok https://www.openmicroscopy.org/omero/downloads/
09:32:06 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 77) ok https://www.openmicroscopy.org/omero/figure/
09:32:06 (sysadmins/public: line 97) ok https://www.openmicroscopy.org/omero/iviewer/
09:32:06 ( users/index: line 54) ok https://www.openmicroscopy.org/omero/new
09:32:06 ( users/index: line 54) ok https://www.openmicroscopy.org/omero/scientists
09:32:06 (sysadmins/server-security: line 21) ok https://www.openmicroscopy.org/security/
09:32:06 ( index: line 28) ok https://www.openmicroscopy.org/security/advisories/
09:32:06 ( users/history: line 1787) ok https://www.openmicroscopy.org/security/advisories/2012-SV1-ldap-authentication
09:32:06 ( users/history: line 1619) ok https://www.openmicroscopy.org/security/advisories/2014-SV1-unicode-passwords
09:32:06 ( users/history: line 1620) ok https://www.openmicroscopy.org/security/advisories/2014-SV2-empty-passwords
09:32:06 ( users/history: line 1580) ok https://www.openmicroscopy.org/security/advisories/2014-SV3-csrf
09:32:06 ( users/history: line 1581) ok https://www.openmicroscopy.org/security/advisories/2014-SV4-poodle
09:32:06 ( users/history: line 1125) ok https://www.openmicroscopy.org/security/advisories/2016-SV1-cleanse
09:32:06 ( users/history: line 1110) ok https://www.openmicroscopy.org/security/advisories/2016-SV2-share
09:32:06 ( users/history: line 1063) ok https://www.openmicroscopy.org/security/advisories/2017-SV1-filename
09:32:06 ( users/history: line 1067) ok https://www.openmicroscopy.org/security/advisories/2017-SV2-edit-rw
09:32:06 ( users/history: line 1070) ok https://www.openmicroscopy.org/security/advisories/2017-SV3-delete-script
09:32:06 ( users/history: line 889) ok https://www.openmicroscopy.org/security/advisories/2017-SV4-guest-user
09:32:06 (sysadmins/server-upgrade: line 135) ok https://www.openmicroscopy.org/security/advisories/2017-SV5-filename-2
09:32:06 ( users/history: line 674) ok https://www.openmicroscopy.org/security/advisories/2017-SV6-job-file-link
09:32:06 (developers/Modules/Api: line 28) ok https://www.openmicroscopy.org/support/
09:32:06 (sysadmins/unix/server-installation: line 180) ok https://wiki.ubuntu.com/Releases
09:32:06 (sysadmins/in-place-import: line 292) ok https://www.openwall.com/lists/kernel-hardening/2012/02/21/20
09:32:06 (developers/Server/ExtendingOmero: line 329) redirect https://www.nginx.com/resources/wiki/ - permanently to https://docs.nginx.com
09:32:07 (developers/Server/ExtendingOmero: line 6) redirect https://www.openmicroscopy.org/forums - permanently to https://forum.image.sc/c/data-management/29
09:32:07 (sysadmins/unix/server-installation: line 124) redirect https://www.oracle.com/technetwork/java/javase/downloads/index.html - permanently to https://www.oracle.com/java/technologies/downloads/?er=221886
09:32:07 (developers/GettingStarted: line 126) ok https://www.pgadmin.org/
09:32:07 (developers/Server: line 32) redirect https://www.oracle.com/technetwork/java/javaee/ejb/index.html - permanently to https://www.oracle.com/java/technologies/enterprise-javabeans-technology.html
09:32:07 (sysadmins/version-requirements: line 395) ok https://www.oracle.com/technetwork/java/eol-135779.html
09:32:07 (sysadmins/server-backup-and-restore: line 112) ok https://www.postgresql.org/docs/10/backup.html
09:32:08 (sysadmins/unix/server-postgresql: line 140) redirect https://www.postgresql.org/docs/current/interactive/index.html - permanently to https://www.postgresql.org/docs/current/index.html
09:32:08 (sysadmins/unix/server-postgresql: line 143) redirect https://www.postgresql.org/docs/current/interactive/runtime-config-connection.html - permanently to https://www.postgresql.org/docs/current/runtime-config-connection.html
09:32:08 (sysadmins/unix/server-postgresql: line 12) ok https://www.postgresql.org/support/versioning/
09:32:08 ( users/cli/index: line 4) ok https://www.python.org
09:32:08 (sysadmins/unix/server-postgresql: line 145) redirect https://www.postgresql.org/docs/current/interactive/client-authentication.html - permanently to https://www.postgresql.org/docs/current/client-authentication.html
09:32:08 (sysadmins/version-requirements: line 264) ok https://www.postgresql.org/download/
09:32:08 (sysadmins/version-requirements: line 288) redirect https://www.python.org/dev/peps/pep-0494/ - with Found to https://peps.python.org/pep-0494/
09:32:08 (sysadmins/version-requirements: line 293) redirect https://www.python.org/dev/peps/pep-0537/ - with Found to https://peps.python.org/pep-0537/
09:32:08 (developers/Web/CSRF: line 14) ok https://www.rfc-editor.org/rfc/rfc2616.html#section-9.1.1
09:32:08 (sysadmins/config: line 1446) ok https://www.quartz-scheduler.org/api/1.8.6/org/quartz/CronExpression.html
09:32:08 (developers/logging: line 4) ok https://www.slf4j.org
09:32:08 (sysadmins/omeromovie: line 36) redirect https://www.scipy.org/install.html - permanently to https://scipy.org/install/
09:32:09 (developers/GettingStarted/AdvancedClientDevelopment: line 19) ok https://www.scons.org
09:32:09 (sysadmins/server-syslog: line 52) ok https://www.splunk.com/
09:32:09 (sysadmins/version-requirements: line 446) redirect https://www.oracle.com/technetwork/java/javase/downloads/index-jsp-138363.html - permanently to https://www.oracle.com/java/technologies/downloads/?er=221886
09:32:09 (sysadmins/config: line 2395) ok https://www.w3.org/TR/referrer-policy/#referrer-policies
09:32:09 (sysadmins/version-requirements: line 254) redirect https://yum.postgresql.org/14/redhat/rhel-9-x86_64/ - permanently to https://download.postgresql.org/pub/repos/yum/14/redhat/rhel-9-x86_64/
09:32:09 ( developers/Cpp: line 4) ok https://zeroc.com
09:32:09 (developers/Web/LinkingFromWebclient: line 86) ok https://www.ncbi.nlm.nih.gov/protein/000397
09:32:09 (sysadmins/version-requirements: line 260) redirect https://yum.postgresql.org/16/redhat/rhel-9-x86_64/ - permanently to https://download.postgresql.org/pub/repos/yum/16/redhat/rhel-9-x86_64/
09:32:09 (sysadmins/version-requirements: line 257) redirect https://yum.postgresql.org/15/redhat/rhel-9-x86_64/ - permanently to https://download.postgresql.org/pub/repos/yum/15/redhat/rhel-9-x86_64/
09:32:10 (developers/Python: line 7) ok https://zeroc.com/ice/downloads/3.6
09:32:10 (sysadmins/unix/server-installation: line 190) redirect https://zeroc.com/downloads/ice - temporarily to https://zeroc.com/ice/downloads/3.7
09:32:10 ( developers/Web: line 29) redirect https://zeroc.com/products/ice - permanently to https://zeroc.com/ice
09:32:10 Adding redirects:
09:32:10 build succeeded.
09:32:10
09:32:10 Look for any errors in the above output or in _build/linkcheck/output.txt
09:32:10
09:32:10 Link check complete; look for any errors in the above output or in _build/linkcheck/output.txt.
09:32:10 Archiving artifacts
09:32:11 Finished: SUCCESS