00:56:34 Started by upstream project "Trigger" build number 311
00:56:34 originally caused by:
00:56:34 Started by timer
00:56:34 Running as SYSTEM
00:56:34 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-docs
00:56:34 The recommended git tool is: NONE
00:56:34 No credentials specified
00:56:34 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-docs/.git # timeout=10
00:56:34 Fetching changes from the remote Git repository
00:56:34 > git config remote.origin.url https://github.com/ome/ome-documentation # timeout=10
00:56:34 Fetching upstream changes from https://github.com/ome/ome-documentation
00:56:34 > git --version # timeout=10
00:56:34 > git --version # 'git version 2.43.5'
00:56:34 > git fetch --tags --force --progress -- https://github.com/ome/ome-documentation +refs/heads/*:refs/remotes/origin/* # timeout=10
00:56:36 > git rev-parse origin/develop^{commit} # timeout=10
00:56:36 Checking out Revision 1798729ff3413634c3d51453ed8b1d994bb2e1cf (origin/develop)
00:56:36 > git config core.sparsecheckout # timeout=10
00:56:36 > git checkout -f 1798729ff3413634c3d51453ed8b1d994bb2e1cf # timeout=10
00:56:40 Commit message: "Merge pull request #2467 from pwalczysko/fix-omero-py-install"
00:56:40 > git rev-list --no-walk 1798729ff3413634c3d51453ed8b1d994bb2e1cf # timeout=10
00:56:41 Cleaning workspace
00:56:41 > git rev-parse --verify HEAD # timeout=10
00:56:41 Resetting working tree
00:56:41 > git reset --hard # timeout=10
00:56:41 > git clean -fdx # timeout=10
00:56:42 [OMERO-docs] $ /bin/bash -xe /tmp/jenkins755797095364778452.sh
00:56:42 + python3 -mvenv venv
00:56:44 + source /home/omero/workspace/OMERO-docs/venv/bin/activate
00:56:44 ++ deactivate nondestructive
00:56:44 ++ '[' -n '' ']'
00:56:44 ++ '[' -n '' ']'
00:56:44 ++ '[' -n /bin/bash -o -n '' ']'
00:56:44 ++ hash -r
00:56:44 ++ '[' -n '' ']'
00:56:44 ++ unset VIRTUAL_ENV
00:56:44 ++ '[' '!' nondestructive = nondestructive ']'
00:56:44 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-docs/venv
00:56:44 ++ export VIRTUAL_ENV
00:56:44 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:56:44 ++ PATH=/home/omero/workspace/OMERO-docs/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:56:44 ++ export PATH
00:56:44 ++ '[' -n '' ']'
00:56:44 ++ '[' -z '' ']'
00:56:44 ++ _OLD_VIRTUAL_PS1=
00:56:44 ++ PS1='(venv) '
00:56:44 ++ export PS1
00:56:44 ++ '[' -n /bin/bash -o -n '' ']'
00:56:44 ++ hash -r
00:56:44 + pip install -U pip
00:56:45 Requirement already satisfied: pip in ./venv/lib/python3.9/site-packages (21.2.3)
00:56:45 Collecting pip
00:56:45 Using cached pip-24.3.1-py3-none-any.whl (1.8 MB)
00:56:45 Installing collected packages: pip
00:56:45 Attempting uninstall: pip
00:56:45 Found existing installation: pip 21.2.3
00:56:45 Uninstalling pip-21.2.3:
00:56:45 Successfully uninstalled pip-21.2.3
00:56:46 Successfully installed pip-24.3.1
00:56:46 + pip install -U scc
00:56:47 Collecting scc
00:56:47 Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB)
00:56:47 Collecting PyGithub>=1.54 (from scc)
00:56:47 Using cached PyGithub-2.5.0-py3-none-any.whl.metadata (3.9 kB)
00:56:47 Collecting PyYAML>=5.1 (from scc)
00:56:47 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
00:56:47 Collecting future (from scc)
00:56:47 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
00:56:47 Collecting ruamel.yaml (from scc)
00:56:47 Using cached ruamel.yaml-0.18.6-py3-none-any.whl.metadata (23 kB)
00:56:47 Collecting ruamel.yaml.jinja2 (from scc)
00:56:47 Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB)
00:56:47 Collecting six (from scc)
00:56:47 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
00:56:47 Collecting urllib3<2 (from scc)
00:56:47 Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB)
00:56:47 Collecting yaclifw<0.3,>=0.2.0 (from scc)
00:56:47 Using cached yaclifw-0.2.0-py3-none-any.whl
00:56:47 Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc)
00:56:47 Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl.metadata (8.6 kB)
00:56:47 Collecting requests>=2.14.0 (from PyGithub>=1.54->scc)
00:56:47 Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB)
00:56:47 Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
00:56:47 Using cached PyJWT-2.10.1-py3-none-any.whl.metadata (4.0 kB)
00:56:47 Collecting typing-extensions>=4.0.0 (from PyGithub>=1.54->scc)
00:56:47 Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB)
00:56:48 Collecting Deprecated (from PyGithub>=1.54->scc)
00:56:48 Using cached Deprecated-1.2.15-py2.py3-none-any.whl.metadata (5.5 kB)
00:56:48 Collecting ruamel.yaml.clib>=0.2.7 (from ruamel.yaml->scc)
00:56:48 Using cached ruamel.yaml.clib-0.2.12-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.7 kB)
00:56:48 Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
00:56:48 Using cached cryptography-44.0.0-cp39-abi3-manylinux_2_28_x86_64.whl.metadata (5.7 kB)
00:56:48 Collecting cffi>=1.4.1 (from pynacl>=1.4.0->PyGithub>=1.54->scc)
00:56:48 Using cached cffi-1.17.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (1.5 kB)
00:56:48 Collecting charset-normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc)
00:56:48 Using cached charset_normalizer-3.4.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (34 kB)
00:56:48 Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc)
00:56:48 Using cached idna-3.10-py3-none-any.whl.metadata (10 kB)
00:56:48 Collecting certifi>=2017.4.17 (from requests>=2.14.0->PyGithub>=1.54->scc)
00:56:48 Using cached certifi-2024.12.14-py3-none-any.whl.metadata (2.3 kB)
00:56:48 Collecting wrapt<2,>=1.10 (from Deprecated->PyGithub>=1.54->scc)
00:56:48 Using cached wrapt-1.17.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.4 kB)
00:56:49 Collecting pycparser (from cffi>=1.4.1->pynacl>=1.4.0->PyGithub>=1.54->scc)
00:56:49 Using cached pycparser-2.22-py3-none-any.whl.metadata (943 bytes)
00:56:49 Using cached scc-0.20.0-py3-none-any.whl (48 kB)
00:56:49 Using cached PyGithub-2.5.0-py3-none-any.whl (375 kB)
00:56:49 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (737 kB)
00:56:49 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
00:56:49 Using cached future-1.0.0-py3-none-any.whl (491 kB)
00:56:49 Using cached ruamel.yaml-0.18.6-py3-none-any.whl (117 kB)
00:56:49 Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB)
00:56:49 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
00:56:49 Using cached PyJWT-2.10.1-py3-none-any.whl (22 kB)
00:56:49 Using cached PyNaCl-1.5.0-cp36-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (856 kB)
00:56:49 Using cached requests-2.32.3-py3-none-any.whl (64 kB)
00:56:49 Using cached ruamel.yaml.clib-0.2.12-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (724 kB)
00:56:49 Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB)
00:56:49 Using cached Deprecated-1.2.15-py2.py3-none-any.whl (9.9 kB)
00:56:49 Using cached certifi-2024.12.14-py3-none-any.whl (164 kB)
00:56:49 Using cached cffi-1.17.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (445 kB)
00:56:49 Using cached charset_normalizer-3.4.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (144 kB)
00:56:49 Using cached cryptography-44.0.0-cp39-abi3-manylinux_2_28_x86_64.whl (4.2 MB)
00:56:49 Using cached idna-3.10-py3-none-any.whl (70 kB)
00:56:49 Using cached wrapt-1.17.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (82 kB)
00:56:49 Using cached pycparser-2.22-py3-none-any.whl (117 kB)
00:56:49 Installing collected packages: wrapt, urllib3, typing-extensions, six, ruamel.yaml.clib, PyYAML, pyjwt, pycparser, idna, future, charset-normalizer, certifi, yaclifw, ruamel.yaml, requests, Deprecated, cffi, ruamel.yaml.jinja2, pynacl, cryptography, PyGithub, scc
00:56:54 Successfully installed Deprecated-1.2.15 PyGithub-2.5.0 PyYAML-6.0.2 certifi-2024.12.14 cffi-1.17.1 charset-normalizer-3.4.0 cryptography-44.0.0 future-1.0.0 idna-3.10 pycparser-2.22 pyjwt-2.10.1 pynacl-1.5.0 requests-2.32.3 ruamel.yaml-0.18.6 ruamel.yaml.clib-0.2.12 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.17.0 typing-extensions-4.12.2 urllib3-1.26.20 wrapt-1.17.0 yaclifw-0.2.0
00:56:54 + test -e src
00:56:54 + scc merge develop --no-ask --reset --comment -S success-only --push merge_ci
00:56:56 Following Github server redirection from /repos/ome/ome-documentation to /repositories/3198415
00:56:56 2024-12-16 00:56:56,217 [github.Reque] INFO Following Github server redirection from /repos/ome/ome-documentation to /repositories/3198415
00:56:58 2024-12-16 00:56:58,300 [ scc.merge] INFO Merging Pull Request(s) based on develop
00:56:58 2024-12-16 00:56:58,300 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
00:56:58 2024-12-16 00:56:58,300 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
00:56:58 2024-12-16 00:56:58,300 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
00:56:58 2024-12-16 00:56:58,300 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
00:56:58 2024-12-16 00:56:58,301 [ scc.merge] INFO Excluding Pull Request(s) without successful status
00:57:14 2024-12-16 00:57:14,500 [ scc.git] INFO - PR 2353 jburel 'Mencoder'
00:57:14 Conflicting PR. Removed from build [OMERO-docs#275](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-docs/275/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-docs/275/consoleText) for more details.
00:57:14 Possible conflicts:
00:57:14 - Upstream changes
00:57:14 - omero/sysadmins/omeromovie.rst
00:57:14
00:57:14 --conflicts
00:57:14
00:57:15 2024-12-16 00:57:15,341 [ scc.merge] INFO Repository: ome/ome-documentation
00:57:15 2024-12-16 00:57:15,341 [ scc.merge] INFO Excluded PRs:
00:57:15 2024-12-16 00:57:15,341 [ scc.merge] INFO - PR 2347 jburel 'pin version to match rtd ones' (exclude comment)
00:57:15 2024-12-16 00:57:15,341 [ scc.merge] INFO - PR 2298 pwalczysko 'test' (exclude comment)
00:57:15 2024-12-16 00:57:15,341 [ scc.merge] INFO - PR 2291 pwalczysko 'Add ansible and docker install doc - former "install.rst"' (status: failure)
00:57:15 2024-12-16 00:57:15,341 [ scc.merge] INFO Already up to date.
00:57:15 2024-12-16 00:57:15,341 [ scc.merge] INFO
00:57:15 2024-12-16 00:57:15,341 [ scc.merge] INFO Merged PRs:
00:57:15 2024-12-16 00:57:15,341 [ scc.merge] INFO - PR 2355 will-moore 'Update python Tables code to use 'Image' column'
00:57:15 2024-12-16 00:57:15,341 [ scc.merge] INFO - PR 2468 jburel 'Remove usage of the tag'
00:57:15 2024-12-16 00:57:15,341 [ scc.merge] INFO
00:57:15 2024-12-16 00:57:15,341 [ scc.merge] INFO Conflicting PRs (not included):
00:57:15 2024-12-16 00:57:15,341 [ scc.merge] INFO - PR 2353 jburel 'Mencoder'
00:57:15 2024-12-16 00:57:15,341 [ scc.merge] INFO
00:57:17 2024-12-16 00:57:17,578 [ scc.merge] INFO Merged branch pushed to https://github.com/snoopycrimecop/ome-documentation/tree/merge_ci
00:57:17 [OMERO-docs] $ /bin/bash -xe /tmp/jenkins9982048213048560227.sh
00:57:17 + source /home/omero/workspace/OMERO-docs/venv/bin/activate
00:57:17 ++ deactivate nondestructive
00:57:17 ++ '[' -n '' ']'
00:57:17 ++ '[' -n '' ']'
00:57:17 ++ '[' -n /bin/bash -o -n '' ']'
00:57:17 ++ hash -r
00:57:17 ++ '[' -n '' ']'
00:57:17 ++ unset VIRTUAL_ENV
00:57:17 ++ '[' '!' nondestructive = nondestructive ']'
00:57:17 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-docs/venv
00:57:17 ++ export VIRTUAL_ENV
00:57:17 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:57:17 ++ PATH=/home/omero/workspace/OMERO-docs/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
00:57:17 ++ export PATH
00:57:17 ++ '[' -n '' ']'
00:57:17 ++ '[' -z '' ']'
00:57:17 ++ _OLD_VIRTUAL_PS1=
00:57:17 ++ PS1='(venv) '
00:57:17 ++ export PS1
00:57:17 ++ '[' -n /bin/bash -o -n '' ']'
00:57:17 ++ hash -r
00:57:17 + pip install -r requirements.txt
00:57:18 Collecting sphinx==5.3.0 (from -r requirements.txt (line 1))
00:57:18 Using cached sphinx-5.3.0-py3-none-any.whl.metadata (6.4 kB)
00:57:18 Collecting sphinx_rtd_theme==1.1.1 (from -r requirements.txt (line 2))
00:57:18 Using cached sphinx_rtd_theme-1.1.1-py2.py3-none-any.whl.metadata (4.4 kB)
00:57:18 Collecting sphinxcontrib-applehelp (from sphinx==5.3.0->-r requirements.txt (line 1))
00:57:18 Using cached sphinxcontrib_applehelp-2.0.0-py3-none-any.whl.metadata (2.3 kB)
00:57:18 Collecting sphinxcontrib-devhelp (from sphinx==5.3.0->-r requirements.txt (line 1))
00:57:18 Using cached sphinxcontrib_devhelp-2.0.0-py3-none-any.whl.metadata (2.3 kB)
00:57:18 Collecting sphinxcontrib-jsmath (from sphinx==5.3.0->-r requirements.txt (line 1))
00:57:18 Using cached sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl.metadata (1.4 kB)
00:57:18 Collecting sphinxcontrib-htmlhelp>=2.0.0 (from sphinx==5.3.0->-r requirements.txt (line 1))
00:57:18 Using cached sphinxcontrib_htmlhelp-2.1.0-py3-none-any.whl.metadata (2.3 kB)
00:57:18 Collecting sphinxcontrib-serializinghtml>=1.1.5 (from sphinx==5.3.0->-r requirements.txt (line 1))
00:57:18 Using cached sphinxcontrib_serializinghtml-2.0.0-py3-none-any.whl.metadata (2.4 kB)
00:57:19 Collecting sphinxcontrib-qthelp (from sphinx==5.3.0->-r requirements.txt (line 1))
00:57:19 Using cached sphinxcontrib_qthelp-2.0.0-py3-none-any.whl.metadata (2.3 kB)
00:57:19 Collecting Jinja2>=3.0 (from sphinx==5.3.0->-r requirements.txt (line 1))
00:57:19 Using cached jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB)
00:57:19 Collecting Pygments>=2.12 (from sphinx==5.3.0->-r requirements.txt (line 1))
00:57:19 Using cached pygments-2.18.0-py3-none-any.whl.metadata (2.5 kB)
00:57:19 Collecting docutils<0.20,>=0.14 (from sphinx==5.3.0->-r requirements.txt (line 1))
00:57:19 Using cached docutils-0.19-py3-none-any.whl.metadata (2.7 kB)
00:57:19 Collecting snowballstemmer>=2.0 (from sphinx==5.3.0->-r requirements.txt (line 1))
00:57:19 Using cached snowballstemmer-2.2.0-py2.py3-none-any.whl.metadata (6.5 kB)
00:57:19 Collecting babel>=2.9 (from sphinx==5.3.0->-r requirements.txt (line 1))
00:57:19 Using cached babel-2.16.0-py3-none-any.whl.metadata (1.5 kB)
00:57:19 Collecting alabaster<0.8,>=0.7 (from sphinx==5.3.0->-r requirements.txt (line 1))
00:57:19 Using cached alabaster-0.7.16-py3-none-any.whl.metadata (2.9 kB)
00:57:19 Collecting imagesize>=1.3 (from sphinx==5.3.0->-r requirements.txt (line 1))
00:57:19 Using cached imagesize-1.4.1-py2.py3-none-any.whl.metadata (1.5 kB)
00:57:19 Requirement already satisfied: requests>=2.5.0 in ./venv/lib/python3.9/site-packages (from sphinx==5.3.0->-r requirements.txt (line 1)) (2.32.3)
00:57:19 Collecting packaging>=21.0 (from sphinx==5.3.0->-r requirements.txt (line 1))
00:57:19 Using cached packaging-24.2-py3-none-any.whl.metadata (3.2 kB)
00:57:19 Collecting importlib-metadata>=4.8 (from sphinx==5.3.0->-r requirements.txt (line 1))
00:57:19 Using cached importlib_metadata-8.5.0-py3-none-any.whl.metadata (4.8 kB)
00:57:19 Collecting docutils<0.20,>=0.14 (from sphinx==5.3.0->-r requirements.txt (line 1))
00:57:19 Using cached docutils-0.17.1-py2.py3-none-any.whl.metadata (2.9 kB)
00:57:20 Collecting zipp>=3.20 (from importlib-metadata>=4.8->sphinx==5.3.0->-r requirements.txt (line 1))
00:57:20 Using cached zipp-3.21.0-py3-none-any.whl.metadata (3.7 kB)
00:57:20 Collecting MarkupSafe>=2.0 (from Jinja2>=3.0->sphinx==5.3.0->-r requirements.txt (line 1))
00:57:20 Using cached MarkupSafe-3.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.0 kB)
00:57:20 Requirement already satisfied: charset-normalizer<4,>=2 in ./venv/lib/python3.9/site-packages (from requests>=2.5.0->sphinx==5.3.0->-r requirements.txt (line 1)) (3.4.0)
00:57:20 Requirement already satisfied: idna<4,>=2.5 in ./venv/lib/python3.9/site-packages (from requests>=2.5.0->sphinx==5.3.0->-r requirements.txt (line 1)) (3.10)
00:57:20 Requirement already satisfied: urllib3<3,>=1.21.1 in ./venv/lib/python3.9/site-packages (from requests>=2.5.0->sphinx==5.3.0->-r requirements.txt (line 1)) (1.26.20)
00:57:20 Requirement already satisfied: certifi>=2017.4.17 in ./venv/lib/python3.9/site-packages (from requests>=2.5.0->sphinx==5.3.0->-r requirements.txt (line 1)) (2024.12.14)
00:57:20 Using cached sphinx-5.3.0-py3-none-any.whl (3.2 MB)
00:57:20 Using cached sphinx_rtd_theme-1.1.1-py2.py3-none-any.whl (2.8 MB)
00:57:20 Using cached alabaster-0.7.16-py3-none-any.whl (13 kB)
00:57:20 Using cached babel-2.16.0-py3-none-any.whl (9.6 MB)
00:57:20 Using cached docutils-0.17.1-py2.py3-none-any.whl (575 kB)
00:57:20 Using cached imagesize-1.4.1-py2.py3-none-any.whl (8.8 kB)
00:57:20 Using cached importlib_metadata-8.5.0-py3-none-any.whl (26 kB)
00:57:20 Using cached jinja2-3.1.4-py3-none-any.whl (133 kB)
00:57:20 Using cached packaging-24.2-py3-none-any.whl (65 kB)
00:57:20 Using cached pygments-2.18.0-py3-none-any.whl (1.2 MB)
00:57:20 Using cached snowballstemmer-2.2.0-py2.py3-none-any.whl (93 kB)
00:57:21 Using cached sphinxcontrib_htmlhelp-2.1.0-py3-none-any.whl (98 kB)
00:57:21 Using cached sphinxcontrib_serializinghtml-2.0.0-py3-none-any.whl (92 kB)
00:57:21 Using cached sphinxcontrib_applehelp-2.0.0-py3-none-any.whl (119 kB)
00:57:21 Using cached sphinxcontrib_devhelp-2.0.0-py3-none-any.whl (82 kB)
00:57:21 Using cached sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl (5.1 kB)
00:57:21 Using cached sphinxcontrib_qthelp-2.0.0-py3-none-any.whl (88 kB)
00:57:21 Using cached MarkupSafe-3.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (20 kB)
00:57:21 Using cached zipp-3.21.0-py3-none-any.whl (9.6 kB)
00:57:21 Installing collected packages: snowballstemmer, zipp, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, Pygments, packaging, MarkupSafe, imagesize, docutils, babel, alabaster, Jinja2, importlib-metadata, sphinx, sphinx_rtd_theme
00:57:24 Successfully installed Jinja2-3.1.4 MarkupSafe-3.0.2 Pygments-2.18.0 alabaster-0.7.16 babel-2.16.0 docutils-0.17.1 imagesize-1.4.1 importlib-metadata-8.5.0 packaging-24.2 snowballstemmer-2.2.0 sphinx-5.3.0 sphinx_rtd_theme-1.1.1 sphinxcontrib-applehelp-2.0.0 sphinxcontrib-devhelp-2.0.0 sphinxcontrib-htmlhelp-2.1.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-2.0.0 sphinxcontrib-serializinghtml-2.0.0 zipp-3.21.0
00:57:24 + cd omero
00:57:24 + make clean html linkcheck
00:57:24 rm -rf _build/*
00:57:24 sphinx-build -b html -d _build/doctrees . _build/html
00:57:24 Running Sphinx v5.3.0
00:57:24 making output directory... done
00:57:24 building [mo]: targets for 0 po files that are out of date
00:57:24 building [html]: targets for 159 source files that are out of date
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00:58:11 ( users/history: line 2119) -ignored- https://www.jboss.org
00:58:11 (developers/Clients/ImportLibrary: line 48) redirect https://docs.openmicroscopy.org/bio-formats/8.0.1/formats/aperio-svs-tiff.html - with Found to https://bio-formats.readthedocs.io/en/v8.0.1/formats/aperio-svs-tiff.html
00:58:11 (developers/analysis: line 53) redirect http://cvs.openmicroscopy.org.uk/snapshots/movies/omero-4-1/mov/FlexPreview4.1-configuration.mov - permanently to https://downloads.openmicroscopy.org/movies/omero-4-1/mov/FlexPreview4.1-configuration.mov
00:58:11 (developers/Clients/ImportLibrary: line 48) redirect https://docs.openmicroscopy.org/latest/ome-model/omero-pyramid/ - with Found to https://ome-model.readthedocs.io/en/stable/omero-pyramid/
00:58:11 (developers/analysis: line 53) redirect http://cvs.openmicroscopy.org.uk/snapshots/movies/omero-4-1/mov/FlexPreview4.1-import.mov - permanently to https://downloads.openmicroscopy.org/movies/omero-4-1/mov/FlexPreview4.1-import.mov
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00:58:11 (sysadmins/troubleshooting: line 286) redirect http://lists.openmicroscopy.org.uk/pipermail/ome-devel/2014-October/003020.html - permanently to https://lists.openmicroscopy.org.uk/pipermail/ome-devel/2014-October/003020.html
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00:58:12 (sysadmins/public: line 229) redirect http://dx.doi.org/10.17867/10000109 - with Found to https://omero.lifesci.dundee.ac.uk/webclient/login/?url=%2Fwebclient%2F%3Fshow%3Dproject-27936
00:58:12 (sysadmins/troubleshooting: line 477) redirect http://lists.openmicroscopy.org.uk/pipermail/ome-users/2009-March/001465.html - permanently to https://lists.openmicroscopy.org.uk/pipermail/ome-users/2009-March/001465.html
00:58:12 (sysadmins/version-requirements: line 493) ok http://nginx.org/packages/centos/9/x86_64/
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00:58:27 (developers/ImportFS: line 54) redirect https://docs.openmicroscopy.org/bio-formats/8.0.1/ - with Found to https://bio-formats.readthedocs.io/en/v8.0.1/
00:58:27 (sysadmins/limitations: line 83) redirect https://docs.openmicroscopy.org/bio-formats/8.0.1/formats/mrc.html - with Found to https://bio-formats.readthedocs.io/en/v8.0.1/formats/mrc.html
00:58:27 (developers/GettingStarted: line 232) ok https://docs.jboss.org/hibernate/orm/3.6/reference/en-US/html/queryhql.html
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00:58:27 (sysadmins/limitations: line 84) redirect https://docs.openmicroscopy.org/bio-formats/8.0.1/formats/tiff.html - with Found to https://bio-formats.readthedocs.io/en/v8.0.1/formats/tiff.html
00:58:27 ( index: line 39) redirect https://docs.openmicroscopy.org/latest/ome-model/ - with Found to https://ome-model.readthedocs.io/en/stable/
00:58:27 (developers/installation: line 30) redirect https://docs.openmicroscopy.org/contributing/using-git.html - with Found to https://ome-contributing.readthedocs.io/en/latest/using-git.html
00:58:27 (sysadmins/limitations: line 61) redirect https://docs.openmicroscopy.org/latest/bio-formats/users/comlinetools/conversion.html - with Found to https://bio-formats.readthedocs.io/en/stable/users/comlinetools/conversion.html
00:58:28 (developers/Model/Units: line 11) redirect https://docs.openmicroscopy.org/latest/ome-model/developers/ome-units.html - with Found to https://ome-model.readthedocs.io/en/stable/developers/ome-units.html
00:58:28 (developers/GettingStarted/AdvancedClientDevelopment: line 366) redirect https://docs.openmicroscopy.org/latest/ome-model/ome-xml/ - with Found to https://ome-model.readthedocs.io/en/stable/ome-xml/
00:58:28 (developers/Model/Containers: line 8) redirect https://docs.openmicroscopy.org/latest/ome-model/schemas/june-2016.html - with Found to https://ome-model.readthedocs.io/en/stable/schemas/june-2016.html
00:58:28 (developers/Tables: line 384) redirect https://docs.openmicroscopy.org/latest/ome-model/developers/screen-plate-well.html - with Found to https://ome-model.readthedocs.io/en/stable/developers/screen-plate-well.html
00:58:28 (developers/Model/Containers: line 8) redirect https://docs.openmicroscopy.org/latest/ome-model/developers/model-overview.html - with Found to https://ome-model.readthedocs.io/en/stable/developers/model-overview.html
00:58:28 ( developers/Java: line 687) redirect https://docs.openmicroscopy.org/latest/ome-model/developers/roi.html - with Found to https://ome-model.readthedocs.io/en/stable/developers/roi.html
00:58:28 (sysadmins/server-upgrade: line 17) redirect https://docs.openmicroscopy.org/latest/omero5.5/sysadmins/server-upgrade.html - with Found to https://docs.openmicroscopy.org/omero/5.5.1/sysadmins/server-upgrade.html
00:58:28 ( index: line 35) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/javadoc/
00:58:28 ( sysadmins/index: line 15) redirect https://docs.openmicroscopy.org/latest/ome-model/specifications/ - with Found to https://ome-model.readthedocs.io/en/stable/specifications/
00:58:28 (developers/Server/LightAdmins: line 204) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/javadoc/ome/services/blitz/repo/RepositoryDaoImpl.html
00:58:28 (developers/Server/GraphsImpl: line 48) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/javadoc/omero/cmd/graphs/BaseGraphTraversalProcessor.html
00:58:28 (developers/Server/GraphsImpl: line 77) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/javadoc/omero/cmd/graphs/ChildOptionsPolicy.html
00:58:28 (developers/Server/GraphsImpl: line 70) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/javadoc/omero/cmd/graphs/BaseGraphPolicyAdjuster.html
00:58:28 (developers/Server/GraphsImpl: line 100) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/javadoc/omero/cmd/graphs/GraphRequestFactory.html
00:58:28 (developers/Server/GraphsImpl: line 100) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/javadoc/omero/cmd/graphs/GraphHelper.html
00:58:28 (sysadmins/config: line 1664) redirect https://docs.openmicroscopy.org/latest/omero/sysadmins/customization.html#download-restrictions - with Found to https://omero.readthedocs.io/en/stable/sysadmins/customization.html#download-restrictions
00:58:28 (developers/Server/GraphsImpl: line 48) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/javadoc/omero/cmd/graphs/NullGraphTraversalProcessor.html
00:58:28 (developers/Server/GraphsImpl: line 83) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/javadoc/omero/cmd/graphs/SkipHeadPolicy.html
00:58:28 (developers/Server/GraphsImpl: line 86) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/javadoc/omero/cmd/graphs/SkipTailPolicy.html
00:58:28 (developers/Model/Units: line 16) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/javadoc/omero/model/ElectricPotentialI.html
00:58:28 (developers/Model/Units: line 18) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/javadoc/omero/model/LengthI.html
00:58:28 (developers/Model/Units: line 17) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/javadoc/omero/model/FrequencyI.html
00:58:28 (developers/Model/Units: line 19) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/javadoc/omero/model/PowerI.html
00:58:28 (developers/Server/GraphsImpl: line 100) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/javadoc/omero/cmd/graphs/GraphUtil.html
00:58:28 (developers/Model/Units: line 21) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/javadoc/omero/model/TemperatureI.html
00:58:28 (developers/Model/Units: line 20) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/javadoc/omero/model/PressureI.html
00:58:28 ( index: line 35) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/
00:58:28 (developers/Modules/Api: line 126) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/api.html
00:58:28 (developers/Model/Units: line 22) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/javadoc/omero/model/TimeI.html
00:58:28 (developers/Modules/Api: line 45) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/api/IAdmin.html
00:58:28 (developers/Modules/Api: line 50) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/api/IConfig.html
00:58:28 (developers/Modules/Api: line 54) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/api/IContainer.html
00:58:28 (developers/Modules/Api: line 57) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/api/ILdap.html
00:58:28 (developers/Modules/Api: line 61) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/api/IMetadata.html
00:58:28 (developers/Modules/Api: line 70) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/api/IQuery.html
00:58:28 (developers/Modules/Api: line 67) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/api/IProjection.html
00:58:28 (developers/Modules/Api: line 64) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/api/IPixels.html
00:58:28 (developers/Modules/Api: line 74) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/api/IRenderingSettings.html
00:58:28 (developers/Modules/Api: line 77) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/api/IRepositoryInfo.html
00:58:28 (developers/Modules/Api: line 80) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/api/IRoi.html
00:58:28 (developers/Modules/Api: line 83) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/api/IScript.html
00:58:28 (developers/GettingStarted/AdvancedClientDevelopment: line 477) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/api/IQuery.html#projection
00:58:28 (developers/Modules/Api: line 86) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/api/ISession.html
00:58:28 (developers/Modules/Api: line 94) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/api/ITypes.html
00:58:28 (developers/Modules/Api: line 91) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/api/ITimeline.html
00:58:28 (developers/Modules/Api: line 89) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/api/IShare.html
00:58:28 (developers/Modules/Api: line 97) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/api/IUpdate.html
00:58:28 (developers/Modules/Api: line 111) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/api/RawFileStore.html
00:58:28 (developers/Modules/Api: line 16) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/api/ServiceFactory.html
00:58:28 (developers/Modules/Api: line 117) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/api/RenderingEngine.html
00:58:28 (developers/Modules/Api: line 114) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/api/RawPixelsStore.html
00:58:28 (developers/Modules/Api: line 121) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/api/ThumbnailStore.html
00:58:28 (developers/PythonBlitzGateway: line 111) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/api/ServiceFactory.html#getQueryService
00:58:28 (developers/PythonBlitzGateway: line 111) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/api/ServiceFactory.html#createRenderingEngine
00:58:28 (developers/Server/GraphRequests: line 79) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/cmd/Chown2.html
00:58:28 (developers/Server/GraphRequests: line 75) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/cmd/Chgrp2.html
00:58:28 (developers/Server/GraphRequests: line 88) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/cmd/Delete2.html
00:58:28 (developers/Server/GraphRequests: line 27) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/cmd/DiskUsage2.html
00:58:28 (developers/Server/GraphRequests: line 83) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/cmd/Chmod2.html
00:58:28 (developers/Server/GraphRequests: line 96) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/cmd/Duplicate.html
00:58:28 (developers/Server/GraphRequests: line 42) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/cmd/FindChildren.html
00:58:28 (developers/Server/GraphRequests: line 34) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/cmd/FindParents.html
00:58:28 (developers/Server/GraphRequests: line 6) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/cmd/GraphQuery.html
00:58:28 (developers/Server/GraphRequests: line 59) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/cmd/GraphModify2.html
00:58:28 (developers/Server/GraphRequests: line 18) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/cmd/LegalGraphTargets.html
00:58:28 (developers/Server/GraphRequests: line 104) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/cmd/SkipHead.html
00:58:28 (developers/GettingStarted: line 136) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/model.html
00:58:28 (developers/Tables: line 343) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/grid/Table.html
00:58:28 (developers/Server/GraphRequests: line 71) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/cmd/graphs/ChildOption.html
00:58:28 (developers/GettingStarted: line 179) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/model/Channel.html
00:58:28 (developers/GettingStarted: line 161) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/model/CommentAnnotation.html
00:58:28 (developers/GettingStarted: line 161) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/model/Annotation.html
00:58:28 (developers/Server/LightAdmins: line 22) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/model/AdminPrivilege.html
00:58:28 (developers/GettingStarted: line 150) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/model/Dataset.html
00:58:28 (developers/GettingStarted: line 161) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/model/DatasetAnnotationLink.html
00:58:28 (developers/GettingStarted: line 150) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/model/DatasetImageLink.html
00:58:29 (developers/GettingStarted: line 150) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/model/Image.html
00:58:29 (developers/GettingStarted: line 161) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/model/FileAnnotation.html
00:58:29 (developers/Server/Permissions: line 381) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/model/Permissions.html#canChgrp
00:58:29 (developers/Server/Permissions: line 382) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/model/Permissions.html#canChown
00:58:29 (developers/Server/Permissions: line 380) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/model/Permissions.html#canAnnotate
00:58:29 (developers/Server/Permissions: line 384) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/model/Permissions.html#canEdit
00:58:29 (developers/Server/Permissions: line 383) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/model/Permissions.html#canDelete
00:58:29 (developers/Server/Permissions: line 385) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/model/Permissions.html#canLink
00:58:29 (developers/GettingStarted: line 150) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/model/Project.html
00:58:29 (developers/GettingStarted: line 161) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/model/ProjectAnnotationLink.html
00:58:29 (developers/GettingStarted: line 150) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/model/ProjectDatasetLink.html
00:58:29 (developers/GettingStarted: line 179) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/model/Pixels.html
00:58:29 (developers/Server/LightAdmins: line 160) ok https://docs.openmicroscopy.org/omero-blitz/5.8.0/slice2html/omero/sys/EventContext.html
00:58:29 ( developers/Java: line 57) ok https://docs.openmicroscopy.org/omero-gateway/5.10.0/javadoc/omero/gateway/model/DataObject.html
00:58:29 ( developers/Java: line 52) ok https://docs.openmicroscopy.org/omero-gateway/5.10.0/javadoc/omero/gateway/facility/BrowseFacility.html
00:58:29 ( developers/Java: line 44) ok https://docs.openmicroscopy.org/omero-gateway/5.10.0/javadoc/omero/gateway/Gateway.html
00:58:29 ( developers/Java: line 52) ok https://docs.openmicroscopy.org/omero-gateway/5.10.0/javadoc//omero/gateway/facility/package-summary.html
00:58:29 (developers/Model/EveryObject: line 24) ok https://docs.openmicroscopy.org/omero-model/5.7.0/javadoc/ome/model/IEnum.html
00:58:29 (developers/Model/EveryObject: line 92) ok https://docs.openmicroscopy.org/omero-model/5.7.0/javadoc/ome/model/ILink.html
00:58:29 (developers/Model/EveryObject: line 54) ok https://docs.openmicroscopy.org/omero-model/5.7.0/javadoc/ome/model/IMutable.html
00:58:29 (developers/Model/EveryObject: line 1190) ok https://docs.openmicroscopy.org/omero-model/5.7.0/javadoc/ome/model/units/Pressure.html
00:58:29 (developers/Model/EveryObject: line 580) ok https://docs.openmicroscopy.org/omero-model/5.7.0/javadoc/ome/model/units/Length.html
00:58:29 (developers/Model/EveryObject: line 425) ok https://docs.openmicroscopy.org/omero-model/5.7.0/javadoc/ome/model/units/ElectricPotential.html
00:58:29 (developers/Model/EveryObject: line 114) ok https://docs.openmicroscopy.org/omero-model/5.7.0/javadoc/ome/model/units/Power.html
00:58:29 (developers/Model/EveryObject: line 467) ok https://docs.openmicroscopy.org/omero-model/5.7.0/javadoc/ome/model/units/Frequency.html
00:58:29 (developers/Model/EveryObject: line 1190) ok https://docs.openmicroscopy.org/omero-model/5.7.0/javadoc/ome/model/units/Temperature.html
00:58:29 (developers/Server/LightAdmins: line 219) ok https://docs.openmicroscopy.org/omero-server/5.7.0/javadoc/ome/logic/AdminImpl.html
00:58:29 (developers/Server/LightAdmins: line 219) ok https://docs.openmicroscopy.org/omero-server/5.7.0/javadoc/ome/security/basic/BasicACLVoter.html
00:58:29 (developers/Server/LightAdmins: line 242) ok https://docs.openmicroscopy.org/omero-server/5.7.0/javadoc/ome/security/basic/LightAdminPrivilegesCleanup.html
00:58:29 (developers/Model/EveryObject: line 2238) ok https://docs.openmicroscopy.org/omero-model/5.7.0/javadoc/ome/model/units/Time.html
00:58:29 (developers/Server/LightAdmins: line 102) ok https://docs.openmicroscopy.org/omero-server/5.7.0/javadoc/ome/security/basic/LightAdminPrivilegesSecurityFilter.html
00:58:29 (developers/Server/LightAdmins: line 219) ok https://docs.openmicroscopy.org/omero-server/5.7.0/javadoc/ome/security/basic/OmeroInterceptor.html
00:58:29 (developers/Server/GraphsImpl: line 60) ok https://docs.openmicroscopy.org/omero-server/5.7.0/javadoc/ome/services/graphs/GraphPolicyRule.html
00:58:29 (developers/Server/GraphsImpl: line 11) ok https://docs.openmicroscopy.org/omero-server/5.7.0/javadoc/ome/services/graphs/GraphPathReport.html
00:58:29 (developers/Server/GraphsImpl: line 88) ok https://docs.openmicroscopy.org/omero-server/5.7.0/javadoc/ome/services/graphs/GraphPolicyRulePredicate.html
00:58:29 (developers/Server/GraphsImpl: line 60) ok https://docs.openmicroscopy.org/omero-server/5.7.0/javadoc/ome/services/graphs/GraphPolicy.html
00:58:29 (developers/Server/GraphsImpl: line 11) ok https://docs.openmicroscopy.org/omero-server/5.7.0/javadoc/ome/services/graphs/GraphPathBean.html
00:58:29 (developers/Server/GraphsImpl: line 32) ok https://docs.openmicroscopy.org/omero-server/5.7.0/javadoc/ome/services/graphs/GraphTraversal.PlanExecutor.html
00:58:29 (developers/Server/GraphsImpl: line 22) ok https://docs.openmicroscopy.org/omero-server/5.7.0/javadoc/ome/services/graphs/GraphTraversal.html
00:58:29 (developers/Server/GraphsImpl: line 32) ok https://docs.openmicroscopy.org/omero-server/5.7.0/javadoc/ome/services/graphs/GraphTraversal.Processor.html
00:58:29 (developers/Server/GraphsImpl: line 88) ok https://docs.openmicroscopy.org/omero-server/5.7.0/javadoc/ome/services/graphs/GroupPredicate.html
00:58:29 (developers/Server/GraphsImpl: line 42) ok https://docs.openmicroscopy.org/omero-server/5.7.0/javadoc/ome/services/graphs/ModelObjectSequencer.html
00:58:29 (developers/Server/GraphsImpl: line 88) ok https://docs.openmicroscopy.org/omero-server/5.7.0/javadoc/ome/services/graphs/PermissionsPredicate.html
00:58:29 (developers/Server/LightAdmins: line 236) ok https://docs.openmicroscopy.org/omero-server/5.7.0/javadoc/ome/services/util/DBUserCheck.html
00:58:29 ( users/history: line 1053) ok https://docs.openmicroscopy.org/omero/5.3.0/developers/whatsnew.html
00:58:29 (sysadmins/whatsnew: line 16) redirect https://docs.openmicroscopy.org/omero/5.5/sysadmins/whatsnew.html - with Found to https://docs.openmicroscopy.org/omero/5.5.1/sysadmins/whatsnew.html
00:58:29 (users/cli/import-target: line 157) ok https://docs.oracle.com/javase/7/docs/api/java/util/regex/Pattern.html
00:58:29 (sysadmins/server-ldap: line 318) ok https://docs.oracle.com/javase/jndi/tutorial/ldap/referral/jndi.html
00:58:29 (developers/Modules/Api: line 223) ok https://docs.oracle.com/javase/tutorial/java/annotations/basics.html
00:58:29 (sysadmins/config: line 811) ok https://docs.oracle.com/javase/jndi/tutorial/ldap/connect/create.html
00:58:29 (sysadmins/config: line 2205) redirect https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples - with Found to https://omero.readthedocs.io/en/stable/sysadmins/grid.html#deployment-examples
00:58:29 (sysadmins/config: line 924) ok https://docs.oracle.com/javase/tutorial/jndi/newstuff/readtimeout.html
00:58:30 (developers/testing: line 342) ok https://docs.pytest.org/en/latest/how-to/usage.html
00:58:30 (developers/testing: line 45) ok https://docs.pytest.org/en/latest/
00:58:30 (sysadmins/dropbox: line 152) ok https://docs.python.org/2.7/library/site.html
00:58:30 (sysadmins/config: line 1011) ok https://docs.python.org/3/library/logging.html#levels
00:58:30 (sysadmins/python3-migration: line 84) ok https://downloads.openmicroscopy.org
00:58:30 (sysadmins/UpgradeCheck: line 29) redirect https://downloads.openmicroscopy.org/latest/omero - permanently to https://downloads.openmicroscopy.org/omero/5.6.14/
00:58:30 (sysadmins/unix/server-install-homebrew: line 204) redirect https://downloads.openmicroscopy.org/latest/omero/artifacts/ - with Found to https://downloads.openmicroscopy.org/omero/5.6.14/artifacts/
00:58:30 (developers/GettingStarted: line 56) redirect https://downloads.openmicroscopy.org/latest/omero5.5/ - with Found to https://downloads.openmicroscopy.org/omero/5.5.1/
00:58:30 (developers/analysis: line 12) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/ - with Found to https://downloads.openmicroscopy.org/omero/5.5.1/api/
00:58:30 (sysadmins/version-requirements: line 248) ok https://download.postgresql.org/pub/repos/yum/12/redhat/rhel-9-x86_64/
00:58:30 ( index: line 35) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/ - with Found to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/
00:58:30 (developers/Server/Aop: line 77) redirect https://docs.spring.io/spring/docs/2.0.x/reference/aop.html - permanently to https://docs.spring.io/spring-framework/docs/2.0.x/reference/aop.html
00:58:30 (developers/PythonBlitzGateway: line 91) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/omero/omero.gateway.html - with Found to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/omero/omero.gateway.html
00:58:30 (developers/PythonBlitzGateway: line 171) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/omero/omero.gateway.html#omero.gateway.ImageWrapper - with Found to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/omero/omero.gateway.html#omero.gateway.ImageWrapper
00:58:30 (developers/PythonBlitzGateway: line 19) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/omero/omero.gateway.html#omero.gateway._BlitzGateway - with Found to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/omero/omero.gateway.html#omero.gateway._BlitzGateway
00:58:30 (developers/PythonBlitzGateway: line 123) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/omero/omero.gateway.html#omero.gateway._BlitzGateway._createProxies - with Found to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/omero/omero.gateway.html#omero.gateway._BlitzGateway._createProxies
00:58:30 (developers/Web/WebGateway: line 15) redirect https://downloads.openmicroscopy.org/latest/omero5.5/api/python/omeroweb/omeroweb.webgateway.html#module-omeroweb.webgateway.urls - with Found to https://downloads.openmicroscopy.org/omero/5.5.1/api/python/omeroweb/omeroweb.webgateway.html#module-omeroweb.webgateway.urls
00:58:30 (developers/Server/HowToCreateAService: line 101) redirect https://docs.spring.io/spring/docs/2.0.x/reference/beans.html#beans-factory-scopes-singleton - permanently to https://docs.spring.io/spring-framework/docs/2.0.x/reference/beans.html#beans-factory-scopes-singleton
00:58:30 (developers/GettingStarted/AdvancedClientDevelopment: line 477) ok https://downloads.openmicroscopy.org/presentations/2017/Team-Training/Hibernate/
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00:58:30 (sysadmins/server-ldap: line 322) ok https://en.wikipedia.org/wiki/Active_Directory
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00:58:31 (developers/Model/Units: line 185) ok https://en.wikipedia.org/wiki/International_System_of_Units
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00:58:31 (developers/GettingStarted/AdvancedClientDevelopment: line 56) ok https://en.wikipedia.org/wiki/Fallacies_of_Distributed_Computing
00:58:31 (sysadmins/config: line 2835) ok https://en.wikipedia.org/wiki/List_of_tz_database_time_zones
00:58:31 (sysadmins/server-syslog: line 4) ok https://en.wikipedia.org/wiki/Syslog
00:58:31 (developers/Model/Units: line 184) ok https://en.wikipedia.org/wiki/System_of_measurement
00:58:31 (sysadmins/server-backup-and-restore: line 216) ok https://en.wikipedia.org/wiki/List_of_backup_software
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00:58:32 (sysadmins/python3-migration: line 52) ok https://galaxy.ansible.com/ome
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00:58:33 (sysadmins/limitations: line 61) ok https://github.com/AllenCellModeling/aicsimageio
00:58:33 ( developers/Web: line 73) ok https://github.com/German-BioImaging/omero-autotag
00:58:33 (sysadmins/limitations: line 61) ok https://github.com/BIOP/ijp-kheops
00:58:33 ( developers/Web: line 73) ok https://github.com/German-BioImaging/omero-tagsearch
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00:58:33 (developers/scripts/index: line 55) ok https://github.com/QBI-Microscopy/omero-user-scripts
00:58:34 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 173) ok https://github.com/adamchainz/django-cors-headers
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00:58:34 (developers/scripts/index: line 57) ok https://github.com/dsudar/OMEROscripts
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00:58:34 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 105) ok https://github.com/jazzband/django-redis/
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00:58:38 (developers/index: line 131) ok https://omero-insight.readthedocs.io/en/latest/
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00:58:44 (users/community-resources: line 14) ok https://www.openmicroscopy.org/bio-formats
00:58:44 (users/community-resources: line 23) redirect https://www.openmicroscopy.org/community/ - permanently to https://www.openmicroscopy.org/community/index.php
00:58:44 (sysadmins/server-performance: line 149) ok https://www.openmicroscopy.org/community/viewtopic.php?f=4&t=7400
00:58:44 (sysadmins/server-ldap: line 315) ok https://www.openmicroscopy.org/community/viewtopic.php?f=5&t=14
00:58:44 (sysadmins/dropbox: line 152) ok https://www.openmicroscopy.org/community/viewtopic.php?f=4&t=7810#p15910
00:58:44 (sysadmins/unix/server-installation: line 472) ok https://www.openmicroscopy.org/community/viewtopic.php?f=5&t=360#p922
00:58:44 (sysadmins/troubleshooting: line 282) ok https://www.openmicroscopy.org/community/viewtopic.php?f=5&t=7537
00:58:44 (sysadmins/server-upgrade: line 256) ok https://www.openmicroscopy.org/community/viewtopic.php?f=5&t=7778
00:58:44 ( users/index: line 59) ok https://www.openmicroscopy.org/explore/
00:58:44 (sysadmins/troubleshooting: line 284) ok https://www.openmicroscopy.org/community/viewtopic.php?f=6&t=7722&p=15264&hilit=CheckedPath#p15264
00:58:44 (users/clients-overview: line 28) ok https://www.openmicroscopy.org/omero/analyze
00:58:44 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 77) ok https://www.openmicroscopy.org/omero/apps/
00:58:44 (developers/Matlab: line 12) ok https://www.openmicroscopy.org/omero/downloads/
00:58:44 (sysadmins/unix/install-web/walkthrough/omeroweb-install-rockylinux9-ice3.6: line 77) ok https://www.openmicroscopy.org/omero/figure/
00:58:44 (sysadmins/public: line 97) ok https://www.openmicroscopy.org/omero/iviewer/
00:58:44 ( users/index: line 54) ok https://www.openmicroscopy.org/omero/new
00:58:44 ( users/index: line 54) ok https://www.openmicroscopy.org/omero/scientists
00:58:44 (sysadmins/server-security: line 21) ok https://www.openmicroscopy.org/security/
00:58:44 ( index: line 28) ok https://www.openmicroscopy.org/security/advisories/
00:58:44 ( users/history: line 1787) ok https://www.openmicroscopy.org/security/advisories/2012-SV1-ldap-authentication
00:58:45 ( users/history: line 1619) ok https://www.openmicroscopy.org/security/advisories/2014-SV1-unicode-passwords
00:58:45 ( users/history: line 1620) ok https://www.openmicroscopy.org/security/advisories/2014-SV2-empty-passwords
00:58:45 ( users/history: line 1580) ok https://www.openmicroscopy.org/security/advisories/2014-SV3-csrf
00:58:45 ( users/history: line 1581) ok https://www.openmicroscopy.org/security/advisories/2014-SV4-poodle
00:58:45 ( users/history: line 1125) ok https://www.openmicroscopy.org/security/advisories/2016-SV1-cleanse
00:58:45 ( users/history: line 1110) ok https://www.openmicroscopy.org/security/advisories/2016-SV2-share
00:58:45 ( users/history: line 1063) ok https://www.openmicroscopy.org/security/advisories/2017-SV1-filename
00:58:45 ( users/history: line 1067) ok https://www.openmicroscopy.org/security/advisories/2017-SV2-edit-rw
00:58:45 ( users/history: line 1070) ok https://www.openmicroscopy.org/security/advisories/2017-SV3-delete-script
00:58:45 ( users/history: line 889) ok https://www.openmicroscopy.org/security/advisories/2017-SV4-guest-user
00:58:45 (sysadmins/server-upgrade: line 135) ok https://www.openmicroscopy.org/security/advisories/2017-SV5-filename-2
00:58:45 ( users/history: line 674) ok https://www.openmicroscopy.org/security/advisories/2017-SV6-job-file-link
00:58:45 (developers/Modules/Api: line 28) ok https://www.openmicroscopy.org/support/
00:58:45 (sysadmins/server-backup-and-restore: line 162) redirect https://www.nongnu.org/rdiff-backup/docs.html - with Found to https://rdiff-backup.net/
00:58:45 (sysadmins/in-place-import: line 292) ok https://www.openwall.com/lists/kernel-hardening/2012/02/21/20
00:58:45 (developers/Server/ExtendingOmero: line 6) redirect https://www.openmicroscopy.org/forums - permanently to https://forum.image.sc/c/data-management/29
00:58:45 (developers/Server/ExtendingOmero: line 329) redirect https://www.nginx.com/resources/wiki/ - permanently to https://docs.nginx.com
00:58:46 (sysadmins/version-requirements: line 395) ok https://www.oracle.com/technetwork/java/eol-135779.html
00:58:46 (sysadmins/version-requirements: line 446) redirect https://www.oracle.com/technetwork/java/javase/downloads/index-jsp-138363.html - permanently to https://www.oracle.com/java/technologies/downloads/?er=221886
00:58:46 (sysadmins/unix/server-installation: line 124) redirect https://www.oracle.com/technetwork/java/javase/downloads/index.html - permanently to https://www.oracle.com/java/technologies/downloads/?er=221886
00:58:46 (sysadmins/server-backup-and-restore: line 112) ok https://www.postgresql.org/docs/10/backup.html
00:58:46 (sysadmins/unix/server-postgresql: line 145) redirect https://www.postgresql.org/docs/current/interactive/client-authentication.html - permanently to https://www.postgresql.org/docs/current/client-authentication.html
00:58:46 (developers/GettingStarted: line 126) ok https://www.pgadmin.org/
00:58:46 (developers/Server: line 32) redirect https://www.oracle.com/technetwork/java/javaee/ejb/index.html - permanently to https://www.oracle.com/java/technologies/enterprise-javabeans-technology.html
00:58:46 (sysadmins/unix/server-postgresql: line 143) redirect https://www.postgresql.org/docs/current/interactive/runtime-config-connection.html - permanently to https://www.postgresql.org/docs/current/runtime-config-connection.html
00:58:47 ( users/cli/index: line 4) ok https://www.python.org
00:58:47 (developers/Web/LinkingFromWebclient: line 86) ok https://www.ncbi.nlm.nih.gov/protein/000397
00:58:47 (sysadmins/unix/server-postgresql: line 12) ok https://www.postgresql.org/support/versioning/
00:58:47 (sysadmins/unix/server-postgresql: line 140) redirect https://www.postgresql.org/docs/current/interactive/index.html - permanently to https://www.postgresql.org/docs/current/index.html
00:58:47 (sysadmins/version-requirements: line 288) redirect https://www.python.org/dev/peps/pep-0494/ - with Found to https://peps.python.org/pep-0494/
00:58:47 (sysadmins/version-requirements: line 293) redirect https://www.python.org/dev/peps/pep-0537/ - with Found to https://peps.python.org/pep-0537/
00:58:47 (sysadmins/version-requirements: line 264) ok https://www.postgresql.org/download/
00:58:47 (developers/Web/CSRF: line 14) ok https://www.rfc-editor.org/rfc/rfc2616.html#section-9.1.1
00:58:47 (sysadmins/config: line 1446) ok https://www.quartz-scheduler.org/api/1.8.6/org/quartz/CronExpression.html
00:58:47 (developers/logging: line 4) ok https://www.slf4j.org
00:58:48 (sysadmins/server-syslog: line 52) ok https://www.splunk.com/
00:58:48 (sysadmins/config: line 2395) ok https://www.w3.org/TR/referrer-policy/#referrer-policies
00:58:48 (sysadmins/omeromovie: line 36) redirect https://www.scipy.org/install.html - permanently to https://scipy.org/install/
00:58:48 (developers/GettingStarted/AdvancedClientDevelopment: line 19) ok https://www.scons.org
00:58:48 (sysadmins/version-requirements: line 257) redirect https://yum.postgresql.org/15/redhat/rhel-9-x86_64/ - permanently to https://download.postgresql.org/pub/repos/yum/15/redhat/rhel-9-x86_64/
00:58:48 (sysadmins/version-requirements: line 260) redirect https://yum.postgresql.org/16/redhat/rhel-9-x86_64/ - permanently to https://download.postgresql.org/pub/repos/yum/16/redhat/rhel-9-x86_64/
00:58:48 (sysadmins/version-requirements: line 254) redirect https://yum.postgresql.org/14/redhat/rhel-9-x86_64/ - permanently to https://download.postgresql.org/pub/repos/yum/14/redhat/rhel-9-x86_64/
00:58:50 ( developers/Cpp: line 4) ok https://zeroc.com
00:58:51 (developers/Python: line 7) ok https://zeroc.com/ice/downloads/3.6
00:58:52 (sysadmins/unix/server-installation: line 190) redirect https://zeroc.com/downloads/ice - temporarily to https://zeroc.com/ice/downloads/3.7
00:58:52 ( developers/Web: line 29) redirect https://zeroc.com/products/ice - permanently to https://zeroc.com/ice
00:58:52 Adding redirects:
00:58:52 build finished with problems.
00:58:53 make: *** [../Makefile:159: linkcheck] Error 1
00:58:53 Build step 'Execute shell' marked build as failure
00:58:53 Archiving artifacts
00:58:54 Finished: FAILURE
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