03:27:26 Started by user devspace
03:27:26 Running as SYSTEM
03:27:26 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-test-integration
03:27:26 [OMERO-test-integration] $ /bin/bash -xe /tmp/jenkins9298977456310833009.sh
03:27:26 + rm -rf /home/omero/workspace/OMERO-test-integration/.venv3
03:27:27 + python3.11 -m venv /home/omero/workspace/OMERO-test-integration/.venv3
03:27:31 + source /home/omero/workspace/OMERO-test-integration/.venv3/bin/activate
03:27:31 ++ deactivate nondestructive
03:27:31 ++ '[' -n '' ']'
03:27:31 ++ '[' -n '' ']'
03:27:31 ++ hash -r
03:27:31 ++ '[' -n '' ']'
03:27:31 ++ unset VIRTUAL_ENV
03:27:31 ++ unset VIRTUAL_ENV_PROMPT
03:27:31 ++ '[' '!' nondestructive = nondestructive ']'
03:27:31 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-test-integration/.venv3
03:27:31 ++ export VIRTUAL_ENV
03:27:31 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
03:27:31 ++ PATH=/home/omero/workspace/OMERO-test-integration/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
03:27:31 ++ export PATH
03:27:31 ++ '[' -n '' ']'
03:27:31 ++ '[' -z '' ']'
03:27:31 ++ _OLD_VIRTUAL_PS1=
03:27:31 ++ PS1='(.venv3) '
03:27:31 ++ export PS1
03:27:31 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
03:27:31 ++ export VIRTUAL_ENV_PROMPT
03:27:31 ++ hash -r
03:27:31 + pip install -U pip setuptools
03:27:31 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
03:27:31 Collecting pip
03:27:31 Using cached pip-25.1.1-py3-none-any.whl (1.8 MB)
03:27:31 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (65.5.1)
03:27:31 Collecting setuptools
03:27:31 Using cached setuptools-80.9.0-py3-none-any.whl (1.2 MB)
03:27:31 Installing collected packages: setuptools, pip
03:27:31 Attempting uninstall: setuptools
03:27:32 Found existing installation: setuptools 65.5.1
03:27:32 Uninstalling setuptools-65.5.1:
03:27:32 Successfully uninstalled setuptools-65.5.1
03:27:32 Attempting uninstall: pip
03:27:32 Found existing installation: pip 22.3.1
03:27:33 Uninstalling pip-22.3.1:
03:27:33 Successfully uninstalled pip-22.3.1
03:27:34 Successfully installed pip-25.1.1 setuptools-80.9.0
03:27:34 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
03:27:34 Collecting zeroc-ice==3.6.5
03:27:35 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
03:27:36 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 22.1 MB/s eta 0:00:00
03:27:37 Installing collected packages: zeroc-ice
03:27:37 Successfully installed zeroc-ice-3.6.5
03:27:37 + pip install markdown
03:27:38 Collecting markdown
03:27:38 Using cached markdown-3.8-py3-none-any.whl.metadata (5.1 kB)
03:27:38 Using cached markdown-3.8-py3-none-any.whl (106 kB)
03:27:38 Installing collected packages: markdown
03:27:38 Successfully installed markdown-3.8
03:27:38 + pip install mox3 pytest pytest-django pytest-xdist pytest-mock
03:27:38 Collecting mox3
03:27:38 Using cached mox3-1.1.0-py3-none-any.whl.metadata (3.2 kB)
03:27:39 Collecting pytest
03:27:39 Using cached pytest-8.4.0-py3-none-any.whl.metadata (7.7 kB)
03:27:39 Collecting pytest-django
03:27:39 Using cached pytest_django-4.11.1-py3-none-any.whl.metadata (8.3 kB)
03:27:39 Collecting pytest-xdist
03:27:39 Using cached pytest_xdist-3.7.0-py3-none-any.whl.metadata (3.0 kB)
03:27:39 Collecting pytest-mock
03:27:39 Using cached pytest_mock-3.14.1-py3-none-any.whl.metadata (3.9 kB)
03:27:39 Collecting pbr!=2.1.0,>=2.0.0 (from mox3)
03:27:39 Using cached pbr-6.1.1-py2.py3-none-any.whl.metadata (3.4 kB)
03:27:39 Collecting fixtures>=3.0.0 (from mox3)
03:27:39 Using cached fixtures-4.2.5-py3-none-any.whl.metadata (22 kB)
03:27:39 Collecting iniconfig>=1 (from pytest)
03:27:39 Using cached iniconfig-2.1.0-py3-none-any.whl.metadata (2.7 kB)
03:27:39 Collecting packaging>=20 (from pytest)
03:27:39 Using cached packaging-25.0-py3-none-any.whl.metadata (3.3 kB)
03:27:39 Collecting pluggy<2,>=1.5 (from pytest)
03:27:39 Using cached pluggy-1.6.0-py3-none-any.whl.metadata (4.8 kB)
03:27:39 Collecting pygments>=2.7.2 (from pytest)
03:27:39 Using cached pygments-2.19.1-py3-none-any.whl.metadata (2.5 kB)
03:27:39 Collecting execnet>=2.1 (from pytest-xdist)
03:27:39 Using cached execnet-2.1.1-py3-none-any.whl.metadata (2.9 kB)
03:27:39 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from pbr!=2.1.0,>=2.0.0->mox3) (80.9.0)
03:27:39 Using cached mox3-1.1.0-py3-none-any.whl (43 kB)
03:27:39 Using cached pytest-8.4.0-py3-none-any.whl (363 kB)
03:27:39 Using cached pluggy-1.6.0-py3-none-any.whl (20 kB)
03:27:39 Using cached pytest_django-4.11.1-py3-none-any.whl (25 kB)
03:27:39 Using cached pytest_xdist-3.7.0-py3-none-any.whl (46 kB)
03:27:39 Using cached pytest_mock-3.14.1-py3-none-any.whl (9.9 kB)
03:27:39 Using cached execnet-2.1.1-py3-none-any.whl (40 kB)
03:27:39 Using cached fixtures-4.2.5-py3-none-any.whl (64 kB)
03:27:39 Using cached iniconfig-2.1.0-py3-none-any.whl (6.0 kB)
03:27:39 Using cached packaging-25.0-py3-none-any.whl (66 kB)
03:27:39 Using cached pbr-6.1.1-py2.py3-none-any.whl (108 kB)
03:27:39 Using cached pygments-2.19.1-py3-none-any.whl (1.2 MB)
03:27:39 Installing collected packages: pygments, pluggy, pbr, packaging, iniconfig, fixtures, execnet, pytest, mox3, pytest-xdist, pytest-mock, pytest-django
03:27:42
03:27:42 Successfully installed execnet-2.1.1 fixtures-4.2.5 iniconfig-2.1.0 mox3-1.1.0 packaging-25.0 pbr-6.1.1 pluggy-1.6.0 pygments-2.19.1 pytest-8.4.0 pytest-django-4.11.1 pytest-mock-3.14.1 pytest-xdist-3.7.0
03:27:42 + pip install tables
03:27:42 Collecting tables
03:27:42 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB)
03:27:42 Collecting numpy>=1.20.0 (from tables)
03:27:42 Using cached numpy-2.3.0-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (62 kB)
03:27:42 Collecting numexpr>=2.6.2 (from tables)
03:27:42 Using cached numexpr-2.11.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
03:27:42 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from tables) (25.0)
03:27:42 Collecting py-cpuinfo (from tables)
03:27:42 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
03:27:43 Collecting blosc2>=2.3.0 (from tables)
03:27:43 Using cached blosc2-3.3.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.9 kB)
03:27:43 Collecting typing-extensions>=4.4.0 (from tables)
03:27:43 Using cached typing_extensions-4.14.0-py3-none-any.whl.metadata (3.0 kB)
03:27:43 Collecting ndindex (from blosc2>=2.3.0->tables)
03:27:43 Using cached ndindex-1.10.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.6 kB)
03:27:43 Collecting msgpack (from blosc2>=2.3.0->tables)
03:27:43 Using cached msgpack-1.1.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.4 kB)
03:27:43 Collecting platformdirs (from blosc2>=2.3.0->tables)
03:27:43 Using cached platformdirs-4.3.8-py3-none-any.whl.metadata (12 kB)
03:27:43 Collecting requests (from blosc2>=2.3.0->tables)
03:27:43 Using cached requests-2.32.4-py3-none-any.whl.metadata (4.9 kB)
03:27:43 Collecting charset_normalizer<4,>=2 (from requests->blosc2>=2.3.0->tables)
03:27:43 Using cached charset_normalizer-3.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (35 kB)
03:27:43 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables)
03:27:43 Using cached idna-3.10-py3-none-any.whl.metadata (10 kB)
03:27:43 Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables)
03:27:43 Using cached urllib3-2.4.0-py3-none-any.whl.metadata (6.5 kB)
03:27:43 Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables)
03:27:43 Using cached certifi-2025.4.26-py3-none-any.whl.metadata (2.5 kB)
03:27:43 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB)
03:27:43 Using cached blosc2-3.3.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB)
03:27:43 Using cached numexpr-2.11.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (401 kB)
03:27:43 Using cached numpy-2.3.0-cp311-cp311-manylinux_2_28_x86_64.whl (16.9 MB)
03:27:43 Using cached typing_extensions-4.14.0-py3-none-any.whl (43 kB)
03:27:43 Using cached msgpack-1.1.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (403 kB)
03:27:43 Using cached ndindex-1.10.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (528 kB)
03:27:43 Using cached platformdirs-4.3.8-py3-none-any.whl (18 kB)
03:27:43 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
03:27:43 Using cached requests-2.32.4-py3-none-any.whl (64 kB)
03:27:43 Using cached charset_normalizer-3.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (147 kB)
03:27:43 Using cached idna-3.10-py3-none-any.whl (70 kB)
03:27:43 Using cached urllib3-2.4.0-py3-none-any.whl (128 kB)
03:27:43 Using cached certifi-2025.4.26-py3-none-any.whl (159 kB)
03:27:43 Installing collected packages: py-cpuinfo, urllib3, typing-extensions, platformdirs, numpy, ndindex, msgpack, idna, charset_normalizer, certifi, requests, numexpr, blosc2, tables
03:27:47
03:27:47 Successfully installed blosc2-3.3.4 certifi-2025.4.26 charset_normalizer-3.4.2 idna-3.10 msgpack-1.1.0 ndindex-1.10.0 numexpr-2.11.0 numpy-2.3.0 platformdirs-4.3.8 py-cpuinfo-9.0.0 requests-2.32.4 tables-3.10.2 typing-extensions-4.14.0 urllib3-2.4.0
03:27:47 + pip install jinja2
03:27:47 Collecting jinja2
03:27:47 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
03:27:47 Collecting MarkupSafe>=2.0 (from jinja2)
03:27:47 Using cached MarkupSafe-3.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.0 kB)
03:27:47 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
03:27:47 Using cached MarkupSafe-3.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (23 kB)
03:27:47 Installing collected packages: MarkupSafe, jinja2
03:27:47
03:27:47 Successfully installed MarkupSafe-3.0.2 jinja2-3.1.6
03:27:47 + pip install PyYAML
03:27:48 Collecting PyYAML
03:27:48 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB)
03:27:48 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB)
03:27:48 Installing collected packages: PyYAML
03:27:48 Successfully installed PyYAML-6.0.2
03:27:48 + pip install omero-py omero-web
03:27:48 Collecting omero-py
03:27:48 Using cached omero_py-5.20.0-py3-none-any.whl.metadata (6.5 kB)
03:27:49 Collecting omero-web
03:27:49 Using cached omero_web-5.29.0-py3-none-any.whl.metadata (8.2 kB)
03:27:49 Collecting urllib3<2 (from omero-py)
03:27:49 Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB)
03:27:49 Collecting appdirs (from omero-py)
03:27:49 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
03:27:49 Collecting future (from omero-py)
03:27:49 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
03:27:49 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.3.0)
03:27:49 Collecting Pillow>=10.0.0 (from omero-py)
03:27:49 Using cached pillow-11.2.1-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (8.9 kB)
03:27:49 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py) (6.0.2)
03:27:49 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
03:27:49 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.32.4)
03:27:50 Collecting portalocker (from omero-py)
03:27:50 Using cached portalocker-3.1.1-py3-none-any.whl.metadata (8.6 kB)
03:27:50 Collecting concurrent-log-handler>=0.9.20 (from omero-web)
03:27:50 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl.metadata (23 kB)
03:27:50 Collecting Django<4.3,>=4.2.3 (from omero-web)
03:27:50 Using cached django-4.2.23-py3-none-any.whl.metadata (4.2 kB)
03:27:50 Collecting django-pipeline (from omero-web)
03:27:50 Using cached django_pipeline-4.0.0-py3-none-any.whl.metadata (5.8 kB)
03:27:50 Collecting django-cors-headers==3.7.0 (from omero-web)
03:27:50 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
03:27:50 Collecting whitenoise>=5.3.0 (from omero-web)
03:27:50 Using cached whitenoise-6.9.0-py3-none-any.whl.metadata (3.6 kB)
03:27:50 Collecting gunicorn>=19.3 (from omero-web)
03:27:50 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB)
03:27:50 Collecting omero-marshal>=0.7.0 (from omero-web)
03:27:50 Using cached omero_marshal-0.9.0-py3-none-any.whl.metadata (2.2 kB)
03:27:50 Collecting pytz (from omero-web)
03:27:50 Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB)
03:27:50 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web) (25.0)
03:27:50 Collecting importlib-resources (from omero-web)
03:27:50 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB)
03:27:50 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web)
03:27:50 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB)
03:27:51 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web)
03:27:51 Using cached sqlparse-0.5.3-py3-none-any.whl.metadata (3.9 kB)
03:27:51 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web) (80.9.0)
03:27:51 Collecting wheel (from django-pipeline->omero-web)
03:27:51 Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB)
03:27:51 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.2)
03:27:51 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.10)
03:27:51 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2025.4.26)
03:27:51 Using cached omero_py-5.20.0-py3-none-any.whl (2.8 MB)
03:27:51 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
03:27:51 Using cached omero_web-5.29.0-py3-none-any.whl (2.8 MB)
03:27:51 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
03:27:51 Using cached django-4.2.23-py3-none-any.whl (8.0 MB)
03:27:51 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB)
03:27:51 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl (28 kB)
03:27:51 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB)
03:27:51 Using cached omero_marshal-0.9.0-py3-none-any.whl (88 kB)
03:27:51 Using cached pillow-11.2.1-cp311-cp311-manylinux_2_28_x86_64.whl (4.6 MB)
03:27:51 Using cached portalocker-3.1.1-py3-none-any.whl (19 kB)
03:27:51 Using cached sqlparse-0.5.3-py3-none-any.whl (44 kB)
03:27:51 Using cached whitenoise-6.9.0-py3-none-any.whl (20 kB)
03:27:51 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
03:27:51 Using cached django_pipeline-4.0.0-py3-none-any.whl (75 kB)
03:27:51 Using cached future-1.0.0-py3-none-any.whl (491 kB)
03:27:51 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB)
03:27:51 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB)
03:27:51 Using cached wheel-0.45.1-py3-none-any.whl (72 kB)
03:27:51 Installing collected packages: pytz, appdirs, whitenoise, wheel, urllib3, sqlparse, portalocker, Pillow, omero-marshal, importlib-resources, gunicorn, future, asgiref, django-pipeline, Django, concurrent-log-handler, omero-py, django-cors-headers, omero-web
03:27:51 Attempting uninstall: urllib3
03:27:51 Found existing installation: urllib3 2.4.0
03:27:51 Uninstalling urllib3-2.4.0:
03:27:51 Successfully uninstalled urllib3-2.4.0
03:27:56
03:27:56 Successfully installed Django-4.2.23 Pillow-11.2.1 appdirs-1.4.4 asgiref-3.8.1 concurrent-log-handler-0.9.28 django-cors-headers-3.7.0 django-pipeline-4.0.0 future-1.0.0 gunicorn-23.0.0 importlib-resources-6.5.2 omero-marshal-0.9.0 omero-py-5.20.0 omero-web-5.29.0 portalocker-3.1.1 pytz-2025.2 sqlparse-0.5.3 urllib3-1.26.20 wheel-0.45.1 whitenoise-6.9.0
03:27:56 [OMERO-test-integration] $ /bin/bash -xe /tmp/jenkins5602913175559996772.sh
03:27:56 + source /home/settings.env
03:27:56 ++ OMERO_DB_HOST=pg
03:27:56 ++ OMERO_DB_USER=postgres
03:27:56 ++ OMERO_DB_PASS=
03:27:56 ++ OMERO_ROOT_PASS=omero
03:27:56 ++ OMERO_DATA_DIR=/OMERO
03:27:56 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
03:27:56 + OMERO_DB_NAME=OMERO-test-integration
03:27:56 + SRC=/home/omero/workspace/OMERO-test-integration/src
03:27:56 + OMERO_DIST=/home/omero/workspace/OMERO-test-integration/src/dist
03:27:56 + export OMERODIR=/home/omero/workspace/OMERO-test-integration/src/dist
03:27:56 + OMERODIR=/home/omero/workspace/OMERO-test-integration/src/dist
03:27:56 + '[' -e /home/omero/workspace/OMERO-test-integration/src/dist ']'
03:27:56 + source /home/omero/workspace/OMERO-test-integration/.venv3/bin/activate
03:27:56 ++ deactivate nondestructive
03:27:56 ++ '[' -n '' ']'
03:27:56 ++ '[' -n '' ']'
03:27:56 ++ hash -r
03:27:56 ++ '[' -n '' ']'
03:27:56 ++ unset VIRTUAL_ENV
03:27:56 ++ unset VIRTUAL_ENV_PROMPT
03:27:56 ++ '[' '!' nondestructive = nondestructive ']'
03:27:56 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-test-integration/.venv3
03:27:56 ++ export VIRTUAL_ENV
03:27:56 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
03:27:56 ++ PATH=/home/omero/workspace/OMERO-test-integration/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
03:27:56 ++ export PATH
03:27:56 ++ '[' -n '' ']'
03:27:56 ++ '[' -z '' ']'
03:27:56 ++ _OLD_VIRTUAL_PS1=
03:27:56 ++ PS1='(.venv3) '
03:27:56 ++ export PS1
03:27:56 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
03:27:56 ++ export VIRTUAL_ENV_PROMPT
03:27:56 ++ hash -r
03:27:56 + omero admin stop
03:27:57 Server not running
03:27:57 + echo not running
03:27:57 not running
03:27:57 + deactivate
03:27:57 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
03:27:57 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
03:27:57 + export PATH
03:27:57 + unset _OLD_VIRTUAL_PATH
03:27:57 + '[' -n '' ']'
03:27:57 + hash -r
03:27:57 + '[' -n '' ']'
03:27:57 + unset VIRTUAL_ENV
03:27:57 + unset VIRTUAL_ENV_PROMPT
03:27:57 + '[' '!' '' = nondestructive ']'
03:27:57 + unset -f deactivate
03:27:57 + sleep 5
03:28:02 + dropdb -f -h pg -U postgres OMERO-test-integration
03:28:02 + rm -rf /home/omero/workspace/OMERO-test-integration/config /home/omero/workspace/OMERO-test-integration/data /home/omero/workspace/OMERO-test-integration/omero-blitz-5.8.4-SNAPSHOT-python.zip /home/omero/workspace/OMERO-test-integration/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-test-integration/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-test-integration/omero_py-5.20.1.dev0.tar.gz /home/omero/workspace/OMERO-test-integration/omero_scripts-5.9.1.dev0.tar.gz /home/omero/workspace/OMERO-test-integration/omero_web-5.29.1.dev0.tar.gz /home/omero/workspace/OMERO-test-integration/src /home/omero/workspace/OMERO-test-integration/version.properties
03:28:03 Copied 1 artifact from "OMERO-build" build number 441
03:28:04 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 434
03:28:06 Copied 2 artifacts from "OMERO-build-build" build number 462
03:28:06 [OMERO-test-integration] $ /bin/bash -xe /tmp/jenkins15089314202571144450.sh
03:28:06 + source /home/settings.env
03:28:06 ++ OMERO_DB_HOST=pg
03:28:06 ++ OMERO_DB_USER=postgres
03:28:06 ++ OMERO_DB_PASS=
03:28:06 ++ OMERO_ROOT_PASS=omero
03:28:06 ++ OMERO_DATA_DIR=/OMERO
03:28:06 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
03:28:06 + export ZIP_FILE=/home/omero/workspace/OMERO-test-integration/omero-blitz-VERSION-python.zip
03:28:06 + ZIP_FILE=/home/omero/workspace/OMERO-test-integration/omero-blitz-VERSION-python.zip
03:28:06 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-test-integration/version.properties
03:28:06 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-test-integration/version.properties
03:28:06 + OMERO_DB_NAME=OMERO-test-integration
03:28:06 + OMERO_DATA_DIR=/home/omero/workspace/OMERO-test-integration/data
03:28:06 + mkdir -p /home/omero/workspace/OMERO-test-integration/data
03:28:06 + SRC=/home/omero/workspace/OMERO-test-integration/src
03:28:06 ++ ls openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441.zip
03:28:06 + ZIP_SRC=openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441.zip
03:28:06 + unzip openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441.zip
03:28:06 Archive: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441.zip
03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/.classpath-template
03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/.github/
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/.github/Pull_Request_Template.md
03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/.github/workflows/
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/.github/workflows/docker_build.yml
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/.github/workflows/release.yml
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03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/.github/workflows/update.yaml
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/.mailmap
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03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/CONTRIBUTING.md
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03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/
03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/antlib/
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03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/antlib/resources/
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03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/antlib/resources/version.xml
03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/antlib/scripts/
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/antlib/scripts/parse_version
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03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tests/
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03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tests/ui/plugins/
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tests/ui/plugins/robot.py
03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tests/ui/resources/
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tests/ui/resources/robot.template
03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tests/ui/resources/web/
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tests/ui/resources/web/annotation.txt
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03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tests/ui/resources/well_sample_posXY.py
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tests/ui/robot_setup.sh
03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tests/ui/testcases/
03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tests/ui/testcases/web/
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tests/ui/testcases/web/annotate_test.robot
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03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tests/ui/testcases/web/webadmin_create_group_and_user.robot
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03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/
03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/CMakeLists.txt
03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/cmake/
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/cmake/CompilerChecks.cmake
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03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/cmake/Version.cmake
03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/
03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/CHANGES
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/CMakeLists.txt
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/CONTRIBUTORS
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03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/README
03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/cmake/
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/cmake/internal_utils.cmake
03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/include/
03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-death-test.h
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-message.h
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-param-test.h
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-param-test.h.pump
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-printers.h
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-spi.h
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-test-part.h
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest-typed-test.h
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest.h
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest_pred_impl.h
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/gtest_prod.h
03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-death-test-internal.h
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-filepath.h
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-internal.h
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-linked_ptr.h
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-param-util-generated.h
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-param-util-generated.h.pump
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03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-port.h
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-string.h
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-tuple.h
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-tuple.h.pump
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-type-util.h
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/include/gtest/internal/gtest-type-util.h.pump
03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/prime_tables.h
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample1.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample1.h
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample10_unittest.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample1_unittest.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample2.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample2.h
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample2_unittest.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample3-inl.h
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample3_unittest.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample4.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample4.h
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample4_unittest.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample5_unittest.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample6_unittest.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample7_unittest.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample8_unittest.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/samples/sample9_unittest.cc
03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/fuse_gtest_files.py
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/gen_gtest_pred_impl.py
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/gtest-config.in
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/pump.py
03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/test/
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/scripts/test/Makefile
03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/src/
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-all.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-death-test.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-filepath.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-internal-inl.h
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-port.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-printers.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-test-part.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest-typed-test.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/src/gtest_main.cc
03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-death-test_ex_test.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-death-test_test.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-filepath_test.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-linked_ptr_test.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-listener_test.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-message_test.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-options_test.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-param-test2_test.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-param-test_test.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-param-test_test.h
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-port_test.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-printers_test.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-test-part_test.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-tuple_test.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-typed-test2_test.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-typed-test_test.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-typed-test_test.h
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest-unittest-api_test.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_all_test.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_break_on_failure_unittest.py
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_break_on_failure_unittest_.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_catch_exceptions_test.py
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_catch_exceptions_test_.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_color_test.py
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_color_test_.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_env_var_test.py
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_env_var_test_.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_environment_test.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_filter_unittest.py
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_filter_unittest_.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_help_test.py
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_help_test_.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_list_tests_unittest.py
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_list_tests_unittest_.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_main_unittest.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_no_test_unittest.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_output_test.py
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_output_test_.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_output_test_golden_lin.txt
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_pred_impl_unittest.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_premature_exit_test.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_prod_test.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_repeat_test.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_shuffle_test.py
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_shuffle_test_.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_sole_header_test.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_stress_test.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_test_utils.py
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_throw_on_failure_ex_test.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_throw_on_failure_test.py
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_throw_on_failure_test_.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_uninitialized_test.py
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_uninitialized_test_.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_unittest.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_xml_outfile1_test_.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_xml_outfile2_test_.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_xml_outfiles_test.py
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_xml_output_unittest.py
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_xml_output_unittest_.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/gtest_xml_test_utils.py
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/production.cc
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/ext/gtest-1.7.0/test/production.h
03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/src/
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/src/README.h
03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/src/omero/
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/src/omero/ClientErrors.cpp
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/src/omero/ClientErrors.h
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/src/omero/IceNoWarnPop.h
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03:28:06 extracting: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/src/omero/IcePortPop.h
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/src/omero/IcePortPush.h
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03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveImageWithAcquisitionDataTest.java
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03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroJava/test/integration/chown/PermissionsTest.java
03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroJava/test/integration/delete/
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03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroJava/test/integration/gateway/
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03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroJava/test/integration/thumbnail/
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroJava/test/integration/thumbnail/BatchLoadingTest.java
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03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroJava/test/integration/thumbnail/SkipThumbnailsPermissionsTest.java
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroJava/test/integration/thumbnail/Utils.java
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03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroPy/bin/
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroPy/bin/omero
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03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroPy/build.xml
03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroPy/examples/
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroPy/examples/createSession.py
03:28:06 extracting: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroPy/examples/load.omero
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroPy/examples/projection_1.py
03:28:06 extracting: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroPy/examples/submit.omero
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroPy/examples/upload.omero
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03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroPy/manualtests/
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03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroPy/setup.py
03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroPy/test/
03:28:06 extracting: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroPy/test/__init__.py
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroPy/test/conftest.py
03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroPy/test/integration/
03:28:06 extracting: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroPy/test/integration/__init__.py
03:28:06 extracting: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroPy/test/integration/client_ctors.cfg
03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroPy/test/integration/clitest/
03:28:06 extracting: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroPy/test/integration/clitest/__init__.py
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroPy/test/integration/clitest/cli.py
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03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroPy/test/integration/fstest/
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroPy/test/integration/fstest/test_rename.py
03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroPy/test/integration/gatewaytest/
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroPy/test/integration/gatewaytest/__init__.py
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03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroPy/test/integration/gatewaytest/test_missing_pyramid.py
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03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/
03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO3A__1/
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03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO3A__4/
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03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO3A__7/
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03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO3__4/
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03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO3__5/
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03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO3__6/
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03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO3__7/
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO3__7/OMERO3__6.sql
03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO4.1__0/
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO4.1__0/OMERO4__0.sql
03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO4.2__0/
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO4.2__0/OMERO4.1__0.sql
03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO4.2__0/t/
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test
03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO4.3__0/
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO4.3__0/OMERO4.2__0.sql
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql
03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO4.4__0/
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO4.4__0/OMERO4.1__0.sql
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO4.4__0/OMERO4.3__0.sql
03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO4__0/
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO4__0/OMERO3A__11.sql
03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO5.0__0/
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO5.0__0/OMERO4.4__0.sql
03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO5.1__1/
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO5.1__1/OMERO5.0__0.sql
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO5.1__1/OMERO5.1__0.sql
03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO5.2__0/
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO5.2__0/OMERO5.1__1.sql
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql
03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO5.3__0/
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO5.3__0/OMERO5.2__0.sql
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO5.3__0/delete-ns-orphans.sql
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO5.4DEV__1/
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO5.4DEV__2/
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO5.4DEV__3/
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
03:28:06 creating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO5.4__0/
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO5.4__0/psql-footer.sql
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO5.4__0/psql-header.sql
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO5.4__0/schema.sql
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/sql/psql/OMERO5.4__0/views.sql
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/test.xml
03:28:06 inflating: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/update_dependencies.sh
03:28:06 extracting: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/antlib/resources/gitversion.xml
03:28:06 extracting: openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441/components/tools/OmeroCpp/cmake/GitVersion.cmake
03:28:06 + rm -f openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441.zip
03:28:06 + mv /home/omero/workspace/OMERO-test-integration/openmicroscopy-5.6.3-567-41e7d4e5b5-ice36-b441 /home/omero/workspace/OMERO-test-integration/src
03:28:06 + source /home/omero/workspace/OMERO-test-integration/.venv3/bin/activate
03:28:06 ++ deactivate nondestructive
03:28:06 ++ '[' -n '' ']'
03:28:06 ++ '[' -n '' ']'
03:28:06 ++ hash -r
03:28:06 ++ '[' -n '' ']'
03:28:06 ++ unset VIRTUAL_ENV
03:28:06 ++ unset VIRTUAL_ENV_PROMPT
03:28:06 ++ '[' '!' nondestructive = nondestructive ']'
03:28:06 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-test-integration/.venv3
03:28:06 ++ export VIRTUAL_ENV
03:28:06 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
03:28:06 ++ PATH=/home/omero/workspace/OMERO-test-integration/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
03:28:06 ++ export PATH
03:28:06 ++ '[' -n '' ']'
03:28:06 ++ '[' -z '' ']'
03:28:06 ++ _OLD_VIRTUAL_PS1=
03:28:06 ++ PS1='(.venv3) '
03:28:06 ++ export PS1
03:28:06 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
03:28:06 ++ export VIRTUAL_ENV_PROMPT
03:28:06 ++ hash -r
03:28:06 + for x in *.tar.gz
03:28:06 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
03:28:07 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
03:28:07 Preparing metadata (setup.py): started
03:28:07 Preparing metadata (setup.py): finished with status 'done'
03:28:07 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.20.0)
03:28:07 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.20)
03:28:07 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
03:28:07 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
03:28:07 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.3.0)
03:28:07 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (11.2.1)
03:28:07 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.2)
03:28:07 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
03:28:07 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.4)
03:28:07 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.1.1)
03:28:07 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.2)
03:28:07 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.10)
03:28:07 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2025.4.26)
03:28:07 Building wheels for collected packages: omero-dropbox
03:28:07 DEPRECATION: Building 'omero-dropbox' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'omero-dropbox'. Discussion can be found at https://github.com/pypa/pip/issues/6334
03:28:07 Building wheel for omero-dropbox (setup.py): started
03:28:07 Building wheel for omero-dropbox (setup.py): finished with status 'done'
03:28:07 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49138 sha256=affa6c2b687a04ebca801c0906aa3f41db06275e33575d6ab057fe1fa98cd0a7
03:28:07 Stored in directory: /home/omero/.cache/pip/wheels/fc/7e/62/5e5d34b5de7cc5d8ff95a6620b111f491c603301cfe622e998
03:28:07 Successfully built omero-dropbox
03:28:07 Installing collected packages: omero-dropbox
03:28:07 Successfully installed omero-dropbox-5.7.1.dev0
03:28:07 + for x in *.tar.gz
03:28:07 + pip install -U omero_marshal-0.9.1.dev0.tar.gz
03:28:08 Processing ./omero_marshal-0.9.1.dev0.tar.gz
03:28:08 Preparing metadata (setup.py): started
03:28:08 Preparing metadata (setup.py): finished with status 'done'
03:28:08 Building wheels for collected packages: omero_marshal
03:28:08 DEPRECATION: Building 'omero_marshal' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'omero_marshal'. Discussion can be found at https://github.com/pypa/pip/issues/6334
03:28:08 Building wheel for omero_marshal (setup.py): started
03:28:08 Building wheel for omero_marshal (setup.py): finished with status 'done'
03:28:08 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88126 sha256=6e1ff889c49daee0fa0483588383284153a4a1c48ea7d9c9d29fcf352c9b5177
03:28:08 Stored in directory: /home/omero/.cache/pip/wheels/fc/98/9c/69cdded6f57ef54b3c96947408fa8d97cfb20a9f1ce1e42dfd
03:28:08 Successfully built omero_marshal
03:28:08 Installing collected packages: omero_marshal
03:28:08 Attempting uninstall: omero_marshal
03:28:08 Found existing installation: omero-marshal 0.9.0
03:28:08 Uninstalling omero-marshal-0.9.0:
03:28:08 Successfully uninstalled omero-marshal-0.9.0
03:28:09 Successfully installed omero_marshal-0.9.1.dev0
03:28:09 + for x in *.tar.gz
03:28:09 + pip install -U omero_py-5.20.1.dev0.tar.gz
03:28:09 Processing ./omero_py-5.20.1.dev0.tar.gz
03:28:09 Preparing metadata (setup.py): started
03:28:10 Preparing metadata (setup.py): finished with status 'done'
03:28:10 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.0) (1.26.20)
03:28:10 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.0) (1.4.4)
03:28:10 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.0) (1.0.0)
03:28:10 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.0) (2.3.0)
03:28:10 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.0) (11.2.1)
03:28:10 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.0) (6.0.2)
03:28:10 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.0) (3.6.5)
03:28:10 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.0) (2.32.4)
03:28:10 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.20.0) (3.1.1)
03:28:10 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.20.0) (3.4.2)
03:28:10 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.20.0) (3.10)
03:28:10 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.20.0) (2025.4.26)
03:28:10 Building wheels for collected packages: omero-py
03:28:10 DEPRECATION: Building 'omero-py' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'omero-py'. Discussion can be found at https://github.com/pypa/pip/issues/6334
03:28:10 Building wheel for omero-py (setup.py): started
03:28:11 Building wheel for omero-py (setup.py): finished with status 'done'
03:28:11 Created wheel for omero-py: filename=omero_py-5.20.0-py3-none-any.whl size=2783428 sha256=ab152f961f44ee6106fd0fa20a3130d38e3adf0a944e673428d1a776db0d9ce9
03:28:11 Stored in directory: /home/omero/.cache/pip/wheels/5f/f5/2c/0a519d94d6da18e063930828655bd2001ee496ecde2752bb3f
03:28:11 Successfully built omero-py
03:28:11 Installing collected packages: omero-py
03:28:11 Attempting uninstall: omero-py
03:28:11 Found existing installation: omero-py 5.20.0
03:28:11 Uninstalling omero-py-5.20.0:
03:28:11 Successfully uninstalled omero-py-5.20.0
03:28:13 Successfully installed omero-py-5.20.0
03:28:13 + for x in *.tar.gz
03:28:13 + pip install -U omero_scripts-5.9.1.dev0.tar.gz
03:28:14 Processing ./omero_scripts-5.9.1.dev0.tar.gz
03:28:14 Preparing metadata (setup.py): started
03:28:14 Preparing metadata (setup.py): finished with status 'done'
03:28:14 Building wheels for collected packages: omero-scripts
03:28:14 DEPRECATION: Building 'omero-scripts' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'omero-scripts'. Discussion can be found at https://github.com/pypa/pip/issues/6334
03:28:14 Building wheel for omero-scripts (setup.py): started
03:28:14 Building wheel for omero-scripts (setup.py): finished with status 'done'
03:28:14 Created wheel for omero-scripts: filename=omero_scripts-5.9.1.dev0-py3-none-any.whl size=136847 sha256=9e6b08cd8b60fd8e89a63e8e37b7ee667e88c6367e1fd2e6d37a15354e93b635
03:28:14 Stored in directory: /home/omero/.cache/pip/wheels/20/22/0f/eb568aab87da8b1d7cb2cb16316e8e8ca7b0973feba3824ff1
03:28:14 Successfully built omero-scripts
03:28:14 Installing collected packages: omero-scripts
03:28:15 Successfully installed omero-scripts-5.9.1.dev0
03:28:15 + for x in *.tar.gz
03:28:15 + pip install -U omero_web-5.29.1.dev0.tar.gz
03:28:15 Processing ./omero_web-5.29.1.dev0.tar.gz
03:28:15 Preparing metadata (setup.py): started
03:28:16 Preparing metadata (setup.py): finished with status 'done'
03:28:16 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (5.20.0)
03:28:16 Requirement already satisfied: concurrent-log-handler>=0.9.20 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (0.9.28)
03:28:16 Requirement already satisfied: Django<4.3,>=4.2.3 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (4.2.23)
03:28:16 Requirement already satisfied: django-pipeline in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (4.0.0)
03:28:16 Requirement already satisfied: django-cors-headers==3.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (3.7.0)
03:28:16 Collecting django-csp (from omero-web==5.29.1.dev0)
03:28:16 Using cached django_csp-4.0-py3-none-any.whl.metadata (3.6 kB)
03:28:16 Requirement already satisfied: whitenoise>=5.3.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (6.9.0)
03:28:16 Requirement already satisfied: gunicorn>=19.3 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (23.0.0)
03:28:16 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (0.9.1.dev0)
03:28:16 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (11.2.1)
03:28:16 Requirement already satisfied: pytz in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (2025.2)
03:28:16 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (3.1.1)
03:28:16 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (25.0)
03:28:16 Requirement already satisfied: importlib-resources in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.1.dev0) (6.5.2)
03:28:16 Requirement already satisfied: asgiref<4,>=3.6.0 in ./.venv3/lib64/python3.11/site-packages (from Django<4.3,>=4.2.3->omero-web==5.29.1.dev0) (3.8.1)
03:28:16 Requirement already satisfied: sqlparse>=0.3.1 in ./.venv3/lib64/python3.11/site-packages (from Django<4.3,>=4.2.3->omero-web==5.29.1.dev0) (0.5.3)
03:28:16 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.26.20)
03:28:16 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.4.4)
03:28:16 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (1.0.0)
03:28:16 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (2.3.0)
03:28:16 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (6.0.2)
03:28:16 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (3.6.5)
03:28:16 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.1.dev0) (2.32.4)
03:28:16 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web==5.29.1.dev0) (80.9.0)
03:28:16 Requirement already satisfied: wheel in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web==5.29.1.dev0) (0.45.1)
03:28:16 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.1.dev0) (3.4.2)
03:28:16 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.1.dev0) (3.10)
03:28:16 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.1.dev0) (2025.4.26)
03:28:16 Using cached django_csp-4.0-py3-none-any.whl (25 kB)
03:28:16 Building wheels for collected packages: omero-web
03:28:16 DEPRECATION: Building 'omero-web' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'omero-web'. Discussion can be found at https://github.com/pypa/pip/issues/6334
03:28:16 Building wheel for omero-web (setup.py): started
03:28:17 Building wheel for omero-web (setup.py): finished with status 'done'
03:28:17 Created wheel for omero-web: filename=omero_web-5.29.1.dev0-py3-none-any.whl size=2817925 sha256=04024863988100c0c84ac8a9495630a710193d1e102d5d44869cfb17470b83cb
03:28:17 Stored in directory: /home/omero/.cache/pip/wheels/95/02/59/a43562e01865bb056837672b6bdeb175a8375c75603af7ba53
03:28:17 Successfully built omero-web
03:28:17 Installing collected packages: django-csp, omero-web
03:28:17 Attempting uninstall: omero-web
03:28:17 Found existing installation: omero-web 5.29.0
03:28:17 Uninstalling omero-web-5.29.0:
03:28:17 Successfully uninstalled omero-web-5.29.0
03:28:18
03:28:18 Successfully installed django-csp-4.0 omero-web-5.29.1.dev0
03:28:18 + pip install omero-certificates
03:28:18 Collecting omero-certificates
03:28:18 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
03:28:18 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.20.0)
03:28:18 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.20)
03:28:18 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
03:28:18 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
03:28:18 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.3.0)
03:28:18 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (11.2.1)
03:28:18 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.2)
03:28:18 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
03:28:18 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.4)
03:28:18 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.1.1)
03:28:18 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.2)
03:28:18 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.10)
03:28:18 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2025.4.26)
03:28:18 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
03:28:18 Installing collected packages: omero-certificates
03:28:18 Successfully installed omero-certificates-0.4.0
03:28:19 + for x in omero-cli-duplicate
03:28:19 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
03:28:19 Collecting omero-cli-duplicate
03:28:19 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-5qvbyt3o/omero-cli-duplicate_2412ca9e81394c2c804fe54c55941550
03:28:19 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-5qvbyt3o/omero-cli-duplicate_2412ca9e81394c2c804fe54c55941550
03:28:20 Running command git checkout -b merge_ci --track origin/merge_ci
03:28:20 Switched to a new branch 'merge_ci'
03:28:20 branch 'merge_ci' set up to track 'origin/merge_ci'.
03:28:20 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 3c2717efab9cfc34c9d3585c70cbef0b76334742
03:28:20 Preparing metadata (setup.py): started
03:28:20 Preparing metadata (setup.py): finished with status 'done'
03:28:20 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.20.0)
03:28:20 Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.20)
03:28:20 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
03:28:20 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
03:28:20 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.3.0)
03:28:20 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (11.2.1)
03:28:20 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.2)
03:28:20 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
03:28:20 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.4)
03:28:20 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.1.1)
03:28:20 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.2)
03:28:20 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.10)
03:28:20 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2025.4.26)
03:28:20 Building wheels for collected packages: omero-cli-duplicate
03:28:20 DEPRECATION: Building 'omero-cli-duplicate' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'omero-cli-duplicate'. Discussion can be found at https://github.com/pypa/pip/issues/6334
03:28:20 Building wheel for omero-cli-duplicate (setup.py): started
03:28:21 Building wheel for omero-cli-duplicate (setup.py): finished with status 'done'
03:28:21 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11541 sha256=531d9d283600dcf3bf1fbc8dedff9d4dfd85a4e596de4999c9296cfe424a3938
03:28:21 Stored in directory: /tmp/pip-ephem-wheel-cache-7_vo_d_3/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
03:28:21 Successfully built omero-cli-duplicate
03:28:21 Installing collected packages: omero-cli-duplicate
03:28:21 Successfully installed omero-cli-duplicate-0.4.1.dev0
03:28:21 + pip install -U numpy
03:28:21 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (2.3.0)
03:28:21 + source /home/omero/workspace/OMERO-test-integration/src/docs/hudson/functions.sh
03:28:21 + /home/omero/workspace/OMERO-test-integration/src/build.py build-default test-compile
03:28:22 Buildfile: /home/omero/workspace/OMERO-test-integration/src/build.xml
03:28:22
03:28:22 check-ivy:
03:28:22 Creating /home/omero/workspace/OMERO-test-integration/src/etc/local.properties
03:28:22 Created dir: /home/omero/workspace/OMERO-test-integration/src/target
03:28:22 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
03:28:22 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
03:28:23
03:28:23 build-scons:
03:28:23 Expanding: /home/omero/workspace/OMERO-test-integration/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-test-integration/src/target/scons
03:28:23
03:28:23 build:
03:28:23 No sub-builds to iterate on
03:28:23 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb...
03:28:23 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb...
03:28:23 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroFS...
03:28:23 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava...
03:28:23
03:28:23 tools-init:
03:28:23 no-op
03:28:23
03:28:23 retrieve:
03:28:23 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
03:28:23 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
03:28:42
03:28:42 prepare:
03:28:42 Preparing: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs
03:28:42 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/.done
03:28:42 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/src
03:28:42 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources
03:28:42 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes
03:28:42 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/test-classes
03:28:42 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/reports
03:28:42 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources
03:28:42 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes
03:28:42 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources
03:28:42 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes
03:28:42 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources
03:28:42 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes
03:28:42 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources
03:28:42 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes
03:28:42
03:28:42 pre-compile:
03:28:42 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated-classes
03:28:42 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated-classes
03:28:43 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated-classes
03:28:43 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated-classes
03:28:43 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated-classes
03:28:43
03:28:43 compile:
03:28:43 no-op
03:28:43
03:28:43 package:
03:28:43 Building jar: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/omero_client.jar
03:28:43
03:28:43 install:
03:28:43 :: delivering :: omero#omero_client;working@53c13f0354ec :: 5.6.3-567-41e7d4e5b5-ice36-b441-ice36 :: integration :: Fri Jun 13 03:28:23 UTC 2025
03:28:43 delivering ivy file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/ivy.xml
03:28:43 :: publishing :: omero#omero_client
03:28:43 published omero_client to /home/omero/workspace/OMERO-test-integration/src/target/repository/omero/omero_client/5.6.3-567-41e7d4e5b5-ice36-b441-ice36/omero_client-5.6.3-567-41e7d4e5b5-ice36-b441-ice36.jar
03:28:43 published ivy to /home/omero/workspace/OMERO-test-integration/src/target/repository/omero/omero_client/5.6.3-567-41e7d4e5b5-ice36-b441-ice36/omero_client-5.6.3-567-41e7d4e5b5-ice36-b441-ice36.xml
03:28:43 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy...
03:28:44 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy...
03:28:44
03:28:44 retrieve:
03:28:44 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
03:28:44 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
03:28:44 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools...
03:28:44
03:28:44 dist:
03:28:44 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/target/service-classes/META-INF
03:28:44 Created dir: /home/omero/workspace/OMERO-test-integration/src/components/tools/target/lib/server
03:28:44 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/components/tools/target/downloads/scripts
03:28:44 Expanding: /home/omero/workspace/OMERO-test-integration/src/components/tools/target/downloads/scripts/omero_scripts-5.9.1.dev0.tar.gz into /home/omero/workspace/OMERO-test-integration/src/components/tools/target/downloads/scripts
03:28:44 Copying 29 files to /home/omero/workspace/OMERO-test-integration/src/components/tools/target/lib/scripts
03:28:44 Copying 29 files to /home/omero/workspace/OMERO-test-integration/src/dist
03:28:44 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-test-integration/src/dist
03:28:44 Entering /home/omero/workspace/OMERO-test-integration/src/components/tests...
03:28:44 Entering /home/omero/workspace/OMERO-test-integration/src/components/tests/ui...
03:28:44
03:28:44 copy-licenses:
03:28:44 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/dist
03:28:44 Created dir: /home/omero/workspace/OMERO-test-integration/src/dist/share
03:28:44 Copying 44 files to /home/omero/workspace/OMERO-test-integration/src/dist/share
03:28:44
03:28:44 copy-history:
03:28:44 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/dist
03:28:44
03:28:44 copy-etc:
03:28:44 Copying 28 files to /home/omero/workspace/OMERO-test-integration/src/dist/etc
03:28:44 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/dist/etc/templates
03:28:44
03:28:44 copy-sql:
03:28:44 Copying 60 files to /home/omero/workspace/OMERO-test-integration/src/dist
03:28:48
03:28:48 copy-server:
03:28:48 conflict on /home/omero/workspace/OMERO-test-integration/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
03:28:48
03:28:48 copy-client:
03:28:48 Created dir: /home/omero/workspace/OMERO-test-integration/src/dist/lib/client
03:28:50 conflict on /home/omero/workspace/OMERO-test-integration/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
03:28:50
03:28:50 update-version:
03:28:50 Copying 1 file to /home/omero/workspace/OMERO-test-integration/src/dist/etc
03:28:50
03:28:50 create-workdirs:
03:28:50 Created dir: /home/omero/workspace/OMERO-test-integration/src/dist/etc/grid
03:28:50 Created dir: /home/omero/workspace/OMERO-test-integration/src/dist/var
03:28:50
03:28:50 copy-luts:
03:28:50 Created dir: /home/omero/workspace/OMERO-test-integration/src/dist/lib/scripts/luts
03:28:50 Copying 47 files to /home/omero/workspace/OMERO-test-integration/src/dist/lib/scripts/luts
03:28:50
03:28:50 test-compile:
03:28:50 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
03:28:50 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroFS...
03:28:50 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy...
03:28:50 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroPy...
03:28:50 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb...
03:28:50 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroWeb...
03:28:50 Entering /home/omero/workspace/OMERO-test-integration/src/components/tests/ui...
03:28:50 Entering /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava...
03:28:50
03:28:50 testng-init:
03:28:50 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
03:28:50 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
03:28:53 03:28:52,836 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
03:28:53 03:28:52,838 |-INFO in ch.qos.logback.classic.util.ContextInitializer@34b846a1 - No custom configurators were discovered as a service.
03:28:53 03:28:52,838 |-INFO in ch.qos.logback.classic.util.ContextInitializer@34b846a1 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
03:28:53 03:28:52,841 |-INFO in ch.qos.logback.classic.util.ContextInitializer@34b846a1 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
03:28:53 03:28:52,841 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
03:28:53 03:28:52,842 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
03:28:53 03:28:52,842 |-INFO in ch.qos.logback.classic.util.ContextInitializer@34b846a1 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
03:28:53 03:28:52,842 |-INFO in ch.qos.logback.classic.util.ContextInitializer@34b846a1 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
03:28:53 03:28:52,844 |-INFO in ch.qos.logback.classic.util.ContextInitializer@34b846a1 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
03:28:53 03:28:52,844 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
03:28:53 03:28:52,844 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml]
03:28:53 03:28:52,845 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@690506b0 - Resource [logback.xml] occurs multiple times on the classpath.
03:28:53 03:28:52,845 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@690506b0 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/classes/logback.xml]
03:28:53 03:28:52,845 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@690506b0 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
03:28:53 03:28:53,029 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
03:28:53 03:28:53,029 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
03:28:53 03:28:53,046 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
03:28:53 03:28:53,048 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@4f29bbde - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
03:28:53 03:28:53,048 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@4f29bbde - Please move "immediateFlush" property into the enclosing appender.
03:28:53 03:28:53,102 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@4f29bbde - Setting the "immediateFlush" property of the enclosing appender to true
03:28:53 03:28:53,102 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
03:28:53 03:28:53,102 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
03:28:53 03:28:53,102 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
03:28:53 03:28:53,102 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
03:28:53 03:28:53,102 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
03:28:53 03:28:53,103 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
03:28:53 03:28:53,104 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@47d9bdf4 - End of configuration.
03:28:53 03:28:53,105 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@31a266e0 - Registering current configuration as safe fallback point
03:28:53 03:28:53,105 |-INFO in ch.qos.logback.classic.util.ContextInitializer@34b846a1 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 261 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
03:28:53
03:28:53 lifecycle.test-compile:
03:28:53 Copying 3 files to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/test-classes
03:28:53 Compiling 85 source files to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/test-classes
03:28:53 warning: [options] bootstrap class path not set in conjunction with -source 8
03:28:54 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
03:28:54 import omero.grid.RawAccessRequest;
03:28:54 ^
03:28:54 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
03:28:54 import omero.grid.RawAccessRequest;
03:28:54 ^
03:28:54 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
03:28:54 import omero.grid.RawAccessRequest;
03:28:54 ^
03:28:54 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
03:28:54 import omero.model.ImportJob;
03:28:54 ^
03:28:54 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
03:28:54 import omero.model.ImportJobI;
03:28:54 ^
03:28:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
03:28:55 IObject link = (IObject) linkClass.newInstance();
03:28:55 ^
03:28:55 where T is a type-variable:
03:28:55 T extends Object declared in class Class
03:28:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
03:28:55 T copy = (T) obj.getClass().newInstance();
03:28:55 ^
03:28:55 where T is a type-variable:
03:28:55 T extends Object declared in class Class
03:28:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
03:28:55 RawAccessRequest raw = new RawAccessRequest();
03:28:55 ^
03:28:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
03:28:55 RawAccessRequest raw = new RawAccessRequest();
03:28:55 ^
03:28:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
03:28:55 raw.repoUuid = legacy.root().getHash().getValue();
03:28:55 ^
03:28:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
03:28:55 raw.command = "rm";
03:28:55 ^
03:28:55 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
03:28:55 raw.args = Arrays.asList(path);
03:28:55 ^
03:28:56 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
03:28:56 final IObject link = linkClass.newInstance();
03:28:56 ^
03:28:56 where T is a type-variable:
03:28:56 T extends Object declared in class Class
03:28:56 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
03:28:56 originalLink.setChild(annotationClass.newInstance());
03:28:56 ^
03:28:56 where T is a type-variable:
03:28:56 T extends Object declared in class Class
03:28:56 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
03:28:56 RoiResult r = svc.findByImage(id, new RoiOptions());
03:28:56 ^
03:28:56 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
03:28:56 final RawAccessRequest request = new RawAccessRequest();
03:28:56 ^
03:28:56 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
03:28:56 final RawAccessRequest request = new RawAccessRequest();
03:28:56 ^
03:28:56 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
03:28:56 request.repoUuid = repo.root().getHash().getValue();
03:28:56 ^
03:28:56 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
03:28:56 request.command = "exists";
03:28:56 ^
03:28:56 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
03:28:56 request.args = Collections.singletonList(dirPath);
03:28:56 ^
03:28:56 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
03:28:56 final RawAccessRequest request = new RawAccessRequest();
03:28:56 ^
03:28:56 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
03:28:56 final RawAccessRequest request = new RawAccessRequest();
03:28:56 ^
03:28:56 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
03:28:56 request.repoUuid = repo.root().getHash().getValue();
03:28:56 ^
03:28:56 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
03:28:56 request.command = "exists";
03:28:56 ^
03:28:56 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
03:28:56 request.args = Collections.singletonList(dirName);
03:28:56 ^
03:28:56 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
03:28:56 final ImportJob importJob = new ImportJobI();
03:28:56 ^
03:28:56 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
03:28:56 final ImportJob importJob = new ImportJobI();
03:28:56 ^
03:28:56 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
03:28:56 importJob.setImageName(omero.rtypes.rstring(name));
03:28:56 ^
03:28:56 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
03:28:56 importJob.setImageDescription(omero.rtypes.rstring(desc));
03:28:56 ^
03:28:56 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
03:28:56 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
03:28:56 ^
03:28:56 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
03:28:56 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
03:28:56 ^
03:28:56 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
03:28:56 final String savedName = sent.getImageName().getValue().toString();
03:28:56 ^
03:28:56 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
03:28:56 final String savedDesc = sent.getImageDescription().getValue().toString();
03:28:56 ^
03:28:56 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
03:28:56 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
03:28:56 ^
03:28:56 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
03:28:56 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
03:28:56 ^
03:28:56 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
03:28:56 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
03:28:56 ^
03:28:56 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
03:28:56 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
03:28:56 ^
03:28:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
03:28:57 RoiResult r = svc.findByImage(image.getId().getValue(),
03:28:57 ^
03:28:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
03:28:57 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
03:28:57 ^
03:28:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
03:28:57 l = svc.getRoiMeasurements(image.getId().getValue(), options);
03:28:57 ^
03:28:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
03:28:57 l = svc.getRoiMeasurements(image.getId().getValue(), options);
03:28:57 ^
03:28:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
03:28:57 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
03:28:57 ^
03:28:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
03:28:57 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
03:28:57 ^
03:28:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
03:28:57 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
03:28:57 ^
03:28:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
03:28:57 table = svc.getTable(f.getId().getValue());
03:28:57 ^
03:28:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
03:28:57 RoiResult r = svc.findByImage(image.getId().getValue(),
03:28:57 ^
03:28:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
03:28:57 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
03:28:57 ^
03:28:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
03:28:57 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
03:28:57 ^
03:28:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
03:28:57 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
03:28:57 ^
03:28:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
03:28:57 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
03:28:57 ^
03:28:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
03:28:57 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
03:28:57 ^
03:28:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
03:28:57 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
03:28:57 ^
03:28:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
03:28:57 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
03:28:57 ^
03:28:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
03:28:57 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
03:28:57 ^
03:28:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal
03:28:57 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
03:28:57 ^
03:28:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
03:28:57 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
03:28:57 ^
03:28:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
03:28:57 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
03:28:57 ^
03:28:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
03:28:57 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
03:28:57 ^
03:28:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
03:28:57 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
03:28:57 ^
03:28:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
03:28:57 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
03:28:57 ^
03:28:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
03:28:57 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
03:28:57 ^
03:28:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
03:28:57 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
03:28:57 ^
03:28:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
03:28:57 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
03:28:57 ^
03:28:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
03:28:57 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
03:28:57 ^
03:28:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
03:28:57 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
03:28:57 ^
03:28:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
03:28:57 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
03:28:57 ^
03:28:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal
03:28:57 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
03:28:57 ^
03:28:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
03:28:57 svc.getShapeStatsRestricted(
03:28:57 ^
03:28:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
03:28:57 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
03:28:57 ^
03:28:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
03:28:57 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
03:28:57 ^
03:28:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
03:28:57 request.typesToIgnore = Collections.singletonList("TagAnnotation");
03:28:57 ^
03:28:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
03:28:57 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
03:28:57 ^
03:28:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
03:28:57 request.typesToIgnore = Collections.singletonList("Annotation");
03:28:57 ^
03:28:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
03:28:57 request.typesToIgnore = Collections.singletonList("Annotation");
03:28:57 ^
03:28:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
03:28:57 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
03:28:57 ^
03:28:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
03:28:57 p2.setRelatedTo(p1);
03:28:57 ^
03:28:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
03:28:57 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
03:28:57 ^
03:28:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
03:28:57 pixels1.setRelatedTo(pixels2);
03:28:57 ^
03:28:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
03:28:57 Pixels pixels = pixels1.getRelatedTo();
03:28:57 ^
03:28:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
03:28:57 Assert.assertNull(pixels1.getRelatedTo());
03:28:57 ^
03:28:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
03:28:57 pixels1.setRelatedTo(pixels2);
03:28:57 ^
03:28:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
03:28:57 Pixels pixels = pixels1.getRelatedTo();
03:28:57 ^
03:28:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
03:28:57 Assert.assertNull(pixels1.getRelatedTo());
03:28:57 ^
03:28:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
03:28:57 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
03:28:57 ^
03:28:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
03:28:57 l = svc.getRoiMeasurements(image.getId().getValue(), options);
03:28:57 ^
03:28:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
03:28:57 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
03:28:57 ^
03:28:57 /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
03:28:57 l = svc.getRoiMeasurements(image.getId().getValue(), options);
03:28:57 ^
03:28:58 Note: Some input files use unchecked or unsafe operations.
03:28:58 Note: Recompile with -Xlint:unchecked for details.
03:28:58 88 warnings
03:28:58 Deleting: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/_omero_build_401475651.tmp
03:28:58 Building jar: /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/OmeroJava-test.jar
03:28:58 :: loading settings :: file = /home/omero/workspace/OMERO-test-integration/src/etc/ivysettings.xml
03:28:58 :: delivering :: omero#OmeroJava-test;working@53c13f0354ec :: 5.6.3-567-41e7d4e5b5-ice36-b441-ice36 :: integration :: Fri Jun 13 03:28:50 UTC 2025
03:28:58 delivering ivy file to /home/omero/workspace/OMERO-test-integration/src/components/tools/OmeroJava/target/OmeroJava-test.xml
03:28:58 :: publishing :: omero#OmeroJava-test
03:28:58 published OmeroJava-test to /home/omero/workspace/OMERO-test-integration/src/target/test-repository/OmeroJava-test-5.6.3-567-41e7d4e5b5-ice36-b441-ice36.jar
03:28:58 published ivy to /home/omero/workspace/OMERO-test-integration/src/target/test-repository/OmeroJava-test-5.6.3-567-41e7d4e5b5-ice36-b441-ice36.xml
03:28:58
03:28:58 BUILD SUCCESSFUL
03:28:58 Total time: 36 seconds
03:28:58 + OMERO_DIST=/home/omero/workspace/OMERO-test-integration/src/dist
03:28:58 + export OMERODIR=/home/omero/workspace/OMERO-test-integration/src/dist
03:28:58 + OMERODIR=/home/omero/workspace/OMERO-test-integration/src/dist
03:28:58 + omero config set omero.db.name OMERO-test-integration
03:28:59 + omero config set omero.db.host pg
03:29:00 + omero config set omero.db.user postgres
03:29:00 + omero config set omero.db.poolsize 50
03:29:01 + omero config set omero.jvmcfg.max_system_memory.blitz 64000
03:29:02 + omero config set omero.data.dir /home/omero/workspace/OMERO-test-integration/data
03:29:03 + omero config set omero.ports.prefix 1
03:29:04 + omero config set omero.web.server_list '[["testintegration",14064,"testintegration"]]'
03:29:05 + omero certificates
03:29:06 OpenSSL 3.2.2 4 Jun 2024 (Library: OpenSSL 3.2.2 4 Jun 2024)
03:29:06 certificates created: /home/omero/workspace/OMERO-test-integration/data/certs/server.key /home/omero/workspace/OMERO-test-integration/data/certs/server.pem /home/omero/workspace/OMERO-test-integration/data/certs/server.p12
03:29:06 + createdb -h pg -U postgres OMERO-test-integration
03:29:06 + omero db script -f dbsetup.sql '' '' omero
03:29:07 WARNING: Positional arguments are deprecated
03:29:07 Using OMERO5.4 for version
03:29:07 Using 0 for patch
03:29:07 Using password from commandline
03:29:08 + psql -h pg -U postgres -d OMERO-test-integration -f dbsetup.sql
03:29:08 BEGIN
03:29:08 CREATE FUNCTION
03:29:08 CREATE FUNCTION
03:29:08 assert_db_server_prerequisites
03:29:08 --------------------------------
03:29:08
03:29:08 (1 row)
03:29:08
03:29:08 DROP FUNCTION
03:29:08 DROP FUNCTION
03:29:08 CREATE DOMAIN
03:29:08 CREATE DOMAIN
03:29:08 CREATE DOMAIN
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03:29:08 CREATE TYPE
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03:29:08 psql:dbsetup.sql:2842: NOTICE: identifier "fkcontraststretchingcontext_codomainmapcontext_id_codomainmapcontext" will be truncated to "fkcontraststretchingcontext_codomainmapcontext_id_codomainmapco"
03:29:08 ALTER TABLE
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03:29:09 psql:dbsetup.sql:4712: NOTICE: identifier "fklogicalchannel_photometricinterpretation_photometricinterpretation" will be truncated to "fklogicalchannel_photometricinterpretation_photometricinterpret"
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03:29:09 psql:dbsetup.sql:5697: NOTICE: identifier "fkreverseintensitycontext_codomainmapcontext_id_codomainmapcontext" will be truncated to "fkreverseintensitycontext_codomainmapcontext_id_codomainmapcont"
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03:29:09 CREATE VIEW
03:29:09 CREATE FUNCTION
03:29:09 CREATE TRIGGER
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03:29:09 CREATE TRIGGER
03:29:09 CREATE INDEX
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03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE FUNCTION
03:29:09 SET CONSTRAINTS
03:29:09 CREATE FUNCTION
03:29:09 CREATE SEQUENCE
03:29:09 ALTER TABLE
03:29:09 ALTER TABLE
03:29:09 ALTER TABLE
03:29:09 ALTER TABLE
03:29:09 ALTER TABLE
03:29:09 CREATE INDEX
03:29:09 CREATE FUNCTION
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE SEQUENCE
03:29:09 INSERT 0 1
03:29:09 CREATE FUNCTION
03:29:09 CREATE FUNCTION
03:29:09 CREATE FUNCTION
03:29:09 CREATE TABLE
03:29:09 CREATE INDEX
03:29:09 CREATE INDEX
03:29:09 CREATE FUNCTION
03:29:09 CREATE TRIGGER
03:29:09 CREATE FUNCTION
03:29:09 CREATE FUNCTION
03:29:09 CREATE TRIGGER
03:29:09 CREATE TRIGGER
03:29:09 CREATE TRIGGER
03:29:09 CREATE TRIGGER
03:29:09 CREATE TRIGGER
03:29:09 CREATE TRIGGER
03:29:09 CREATE TRIGGER
03:29:09 CREATE TRIGGER
03:29:09 CREATE TRIGGER
03:29:09 CREATE TRIGGER
03:29:09 CREATE TRIGGER
03:29:09 CREATE TRIGGER
03:29:09 CREATE TRIGGER
03:29:09 CREATE TRIGGER
03:29:09 CREATE TRIGGER
03:29:09 CREATE TRIGGER
03:29:09 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE FUNCTION
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE FUNCTION
03:29:10 CREATE FUNCTION
03:29:10 CREATE FUNCTION
03:29:10 CREATE FUNCTION
03:29:10 CREATE FUNCTION
03:29:10 CREATE FUNCTION
03:29:10 CREATE FUNCTION
03:29:10 CREATE FUNCTION
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE FUNCTION
03:29:10 CREATE TRIGGER
03:29:10 CREATE FUNCTION
03:29:10 CREATE TRIGGER
03:29:10 CREATE FUNCTION
03:29:10 CREATE TRIGGER
03:29:10 CREATE FUNCTION
03:29:10 CREATE TRIGGER
03:29:10 CREATE FUNCTION
03:29:10 CREATE TRIGGER
03:29:10 CREATE FUNCTION
03:29:10 CREATE TRIGGER
03:29:10 CREATE FUNCTION
03:29:10 CREATE TRIGGER
03:29:10 CREATE FUNCTION
03:29:10 CREATE TRIGGER
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 INSERT 0 1
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 INSERT 0 1
03:29:10 INSERT 0 1
03:29:10 INSERT 0 1
03:29:10 INSERT 0 1
03:29:10 INSERT 0 1
03:29:10 INSERT 0 1
03:29:10 INSERT 0 1
03:29:10 INSERT 0 1
03:29:10 INSERT 0 1
03:29:10 INSERT 0 1
03:29:10 INSERT 0 1
03:29:10 INSERT 0 1
03:29:10 INSERT 0 1
03:29:10 UPDATE 1
03:29:10 UPDATE 1
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 INSERT 0 1
03:29:10 INSERT 0 1
03:29:10 INSERT 0 1
03:29:10 INSERT 0 1
03:29:10 INSERT 0 1
03:29:10 INSERT 0 1
03:29:10 INSERT 0 1
03:29:10 INSERT 0 1
03:29:10 INSERT 0 1
03:29:10 INSERT 0 1
03:29:10 INSERT 0 1
03:29:10 INSERT 0 1
03:29:10 INSERT 0 1
03:29:10 INSERT 0 1
03:29:10 INSERT 0 1
03:29:10 INSERT 0 1
03:29:10 INSERT 0 1
03:29:10 INSERT 0 1
03:29:10 INSERT 0 1
03:29:10 INSERT 0 1
03:29:10 INSERT 0 1
03:29:10 INSERT 0 1
03:29:10 INSERT 0 1
03:29:10 INSERT 0 1
03:29:10 INSERT 0 1
03:29:10 INSERT 0 1
03:29:10 INSERT 0 1
03:29:10 INSERT 0 1
03:29:10 INSERT 0 1
03:29:10 INSERT 0 1
03:29:10 INSERT 0 1
03:29:10 INSERT 0 1
03:29:10 INSERT 0 1
03:29:10 INSERT 0 1
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03:29:10 UPDATE 1
03:29:10 UPDATE 1
03:29:10 UPDATE 1
03:29:10 UPDATE 1
03:29:10 UPDATE 1
03:29:10 UPDATE 1
03:29:10 UPDATE 1
03:29:10 UPDATE 1
03:29:10 UPDATE 1
03:29:10 UPDATE 1
03:29:10 UPDATE 1
03:29:10 ALTER TABLE
03:29:10 CREATE FUNCTION
03:29:10 CREATE TABLE
03:29:10 INSERT 0 1
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 CREATE INDEX
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 CREATE INDEX
03:29:10 CREATE INDEX
03:29:10 CREATE INDEX
03:29:10 CREATE INDEX
03:29:10 CREATE INDEX
03:29:10 ALTER TABLE
03:29:10 CREATE INDEX
03:29:10 CREATE INDEX
03:29:10 CREATE INDEX
03:29:10 CREATE INDEX
03:29:10 CREATE INDEX
03:29:10 CREATE INDEX
03:29:10 CREATE INDEX
03:29:10 CREATE INDEX
03:29:10 CREATE INDEX
03:29:10 CREATE INDEX
03:29:10 CREATE INDEX
03:29:10 CREATE INDEX
03:29:10 CREATE INDEX
03:29:10 CREATE INDEX
03:29:10 CREATE INDEX
03:29:10 CREATE INDEX
03:29:10 CREATE INDEX
03:29:10 CREATE INDEX
03:29:10 CREATE INDEX
03:29:10 CREATE INDEX
03:29:10 CREATE INDEX
03:29:10 CREATE TABLE
03:29:10 INSERT 0 1
03:29:10 INSERT 0 1
03:29:10 CREATE TABLE
03:29:10 INSERT 0 1
03:29:10 CREATE FUNCTION
03:29:10 CREATE TRIGGER
03:29:10 CREATE FUNCTION
03:29:10 CREATE TRIGGER
03:29:10 CREATE FUNCTION
03:29:10 CREATE TRIGGER
03:29:10 CREATE FUNCTION
03:29:10 CREATE TRIGGER
03:29:10 CREATE FUNCTION
03:29:10 CREATE TRIGGER
03:29:10 CREATE FUNCTION
03:29:10 CREATE TRIGGER
03:29:10 CREATE FUNCTION
03:29:10 CREATE TRIGGER
03:29:10 CREATE TABLE
03:29:10 CREATE INDEX
03:29:10 CREATE INDEX
03:29:10 CREATE INDEX
03:29:10 CREATE INDEX
03:29:10 CREATE INDEX
03:29:10 CREATE INDEX
03:29:10 CREATE INDEX
03:29:10 CREATE FUNCTION
03:29:10 CREATE TRIGGER
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 CREATE FUNCTION
03:29:10 CREATE TRIGGER
03:29:10 CREATE FUNCTION
03:29:10 CREATE FUNCTION
03:29:10 CREATE FUNCTION
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 DROP TABLE
03:29:10 DROP TABLE
03:29:10 DROP TABLE
03:29:10 DROP TABLE
03:29:10 DROP TABLE
03:29:10 CREATE VIEW
03:29:10 CREATE VIEW
03:29:10 CREATE VIEW
03:29:10 CREATE VIEW
03:29:10 CREATE VIEW
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 ALTER TABLE
03:29:10 CREATE FUNCTION
03:29:10 CREATE TRIGGER
03:29:10 CREATE TABLE
03:29:10 CREATE INDEX
03:29:10 CREATE FUNCTION
03:29:10 CREATE FUNCTION
03:29:10 CREATE FUNCTION
03:29:10 CREATE FUNCTION
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE FUNCTION
03:29:10 CREATE FUNCTION
03:29:10 CREATE TRIGGER
03:29:10 CREATE TRIGGER
03:29:10 CREATE INDEX
03:29:10 UPDATE 1
03:29:10 COMMIT
03:29:10 + rm dbsetup.sql
03:29:10 + export OMERO_PROFILE=/home/omero/workspace/OMERO-test-integration/config
03:29:10 + OMERO_PROFILE=/home/omero/workspace/OMERO-test-integration/config
03:29:10 + mkdir -p /home/omero/workspace/OMERO-test-integration/config/blitz
03:29:10 + cp /home/omero/workspace/OMERO-test-integration/src/dist/etc/blitz/mail-senders.example /home/omero/workspace/OMERO-test-integration/src/dist/etc/blitz/mail-server.example /home/omero/workspace/OMERO-test-integration/config/blitz
03:29:10 + for f in $OMERO_PROFILE/blitz/*
03:29:10 ++ basename /home/omero/workspace/OMERO-test-integration/config/blitz/mail-senders.example .example
03:29:10 + mv /home/omero/workspace/OMERO-test-integration/config/blitz/mail-senders.example /home/omero/workspace/OMERO-test-integration/config/blitz/mail-senders.xml
03:29:10 + for f in $OMERO_PROFILE/blitz/*
03:29:10 ++ basename /home/omero/workspace/OMERO-test-integration/config/blitz/mail-server.example .example
03:29:10 + mv /home/omero/workspace/OMERO-test-integration/config/blitz/mail-server.example /home/omero/workspace/OMERO-test-integration/config/blitz/mail-server.xml
03:29:10 + omero config set omero.mail.config true
03:29:11 + omero config set omero.mail.fake true
03:29:12 + omero config set omero.mail.port 2525
03:29:13 + BUILD_ID=DONT_KILL_ME
03:29:13 + omero admin start
03:29:17 No descriptor given. Using etc/grid/default.xml
03:29:19 Creating /home/omero/workspace/OMERO-test-integration/src/dist/var/master
03:29:19 Initializing /home/omero/workspace/OMERO-test-integration/src/dist/var/log
03:29:19 Creating /home/omero/workspace/OMERO-test-integration/src/dist/var/registry
03:29:19 Waiting on startup. Use CTRL-C to exit
03:29:19 .............................
03:34:09 Failed to startup some components after 300 seconds
03:34:09 Calling "stop" on remaining components
03:34:09 Waiting on shutdown. Use CTRL-C to exit
03:34:09 ......Build step 'Execute shell' marked build as failure
03:35:09 Recording test results
03:35:10 ERROR: Step ‘Publish JUnit test result report’ failed: No test report files were found. Configuration error?
03:35:10 TestNG Reports Processing: START
03:35:10 Looking for TestNG results report in workspace using pattern: **/OmeroJava/target/reports/integration/*.xml
03:35:11 Did not find any matching files.
03:35:11 Finished: FAILURE
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