Started by upstream project "Trigger" build number 617 originally caused by: Started by timer [Pipeline] Start of Pipeline [Pipeline] node Running on testintegration in /home/omero/workspace/OMERO-plugins-push [Pipeline] { [Pipeline] library Loading library recursiveMerge@master Attempting to resolve master from remote references... > git --version # timeout=10 > git --version # 'git version 2.39.2' > git ls-remote -- https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Found match: refs/heads/master revision 654fab96d71411fab33e55b79057bcbf94eef8a2 The recommended git tool is: NONE No credentials specified > git rev-parse --resolve-git-dir /var/jenkins_home/jobs/OMERO-plugins-push/workspace@libs/3527f795de077758b82663f7b48798100750860c75e4099522d51863b08dc748/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Fetching without tags Fetching upstream changes from https://github.com/ome/jenkins-library-recursivemerge.git > git --version # timeout=10 > git --version # 'git version 2.39.2' > git fetch --no-tags --force --progress -- https://github.com/ome/jenkins-library-recursivemerge.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Checking out Revision 654fab96d71411fab33e55b79057bcbf94eef8a2 (master) > git config core.sparsecheckout # timeout=10 > git checkout -f 654fab96d71411fab33e55b79057bcbf94eef8a2 # timeout=10 Commit message: "Merge pull request #18 from jburel/python_311" > git rev-list --no-walk 654fab96d71411fab33e55b79057bcbf94eef8a2 # timeout=10 [Pipeline] checkout The recommended git tool is: NONE No credentials specified Fetching changes from the remote Git repository Checking out Revision 84258d5f2eea775a37267d49c87b3698bcfa5d38 (refs/remotes/origin/master) Commit message: "Merge pull request #426 from ome/dependabot/submodules/omero-prometheus-tools-eb47378" > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-plugins-push/.git # timeout=10 > git config remote.origin.url https://github.com/ome/omero-plugins.git # timeout=10 Fetching upstream changes from https://github.com/ome/omero-plugins.git > git --version # timeout=10 > git --version # 'git version 2.43.5' > git fetch --tags --force --progress -- https://github.com/ome/omero-plugins.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 84258d5f2eea775a37267d49c87b3698bcfa5d38 # timeout=10 > git rev-list --no-walk 84258d5f2eea775a37267d49c87b3698bcfa5d38 # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -fdx # timeout=10 > git submodule foreach --recursive git reset --hard # timeout=10 > git submodule foreach --recursive git clean -fdx # timeout=10 > git remote # timeout=10 > git submodule init # timeout=10 > git submodule sync # timeout=10 > git config --get remote.origin.url # timeout=10 > git submodule init # timeout=10 > git config -f .gitmodules --get-regexp ^submodule\.(.+)\.url # timeout=10 > git config --get submodule.omero-figure.url # timeout=10 > git config -f .gitmodules --get submodule.omero-figure.path # timeout=10 > git config --get submodule.minimal-omero-client.url # timeout=10 > git config -f .gitmodules --get submodule.minimal-omero-client.path # timeout=10 > git config --get submodule.scripts.url # timeout=10 > git config -f .gitmodules --get submodule.scripts.path # timeout=10 > git config --get submodule.omero-test-infra.url # timeout=10 > git config -f .gitmodules --get submodule.omero-test-infra.path # timeout=10 > git config --get submodule.omero-prometheus-tools.url # timeout=10 > git config -f .gitmodules --get submodule.omero-prometheus-tools.path # timeout=10 > git config --get submodule.omero-parade.url # timeout=10 > git config -f .gitmodules --get submodule.omero-parade.path # timeout=10 > git config --get submodule.omero-mapr.url # timeout=10 > git config -f .gitmodules --get submodule.omero-mapr.path # timeout=10 > git config --get submodule.omero-fpbioimage.url # timeout=10 > git config -f .gitmodules --get submodule.omero-fpbioimage.path # timeout=10 > git config --get submodule.omero-iviewer.url # timeout=10 > git config -f .gitmodules --get submodule.omero-iviewer.path # timeout=10 > git config --get submodule.omero-gallery.url # timeout=10 > git config -f .gitmodules --get submodule.omero-gallery.path # timeout=10 > git config --get submodule.rOMERO-gateway.url # timeout=10 > git config -f .gitmodules --get submodule.rOMERO-gateway.path # timeout=10 > git config --get submodule.omero-weberror.url # timeout=10 > git config -f .gitmodules --get submodule.omero-weberror.path # timeout=10 > git config --get submodule.omero-cli-render.url # timeout=10 > git config -f .gitmodules --get submodule.omero-cli-render.path # timeout=10 > git config --get submodule.omero-cli-duplicate.url # timeout=10 > git config -f .gitmodules --get submodule.omero-cli-duplicate.path # timeout=10 > git config --get submodule.omero-metadata.url # timeout=10 > git config -f .gitmodules --get submodule.omero-metadata.path # timeout=10 > git config --get submodule.omero-webtest.url # timeout=10 > git config -f .gitmodules --get submodule.omero-webtest.path # timeout=10 > git config --get submodule.omero-upload.url # timeout=10 > git config -f .gitmodules --get submodule.omero-upload.path # timeout=10 > git config --get submodule.omero-virtual-microscope.url # timeout=10 > git config -f .gitmodules --get submodule.omero-virtual-microscope.path # timeout=10 > git config --get submodule.omero-rois.url # timeout=10 > git config -f .gitmodules --get submodule.omero-rois.path # timeout=10 > git config --get submodule.omero-signup.url # timeout=10 > git config -f .gitmodules --get submodule.omero-signup.path # timeout=10 > git config --get submodule.omero-web-zarr.url # timeout=10 > git config -f .gitmodules --get submodule.omero-web-zarr.path # timeout=10 > git config --get submodule.omero-cli-zarr.url # timeout=10 > git config -f .gitmodules --get submodule.omero-cli-zarr.path # timeout=10 > git submodule update --init --recursive omero-figure # timeout=10 > git submodule update --init --recursive minimal-omero-client # timeout=10 > git submodule update --init --recursive scripts # timeout=10 > git submodule update --init --recursive omero-test-infra # timeout=10 > git submodule update --init --recursive omero-prometheus-tools # timeout=10 > git submodule update --init --recursive omero-parade # timeout=10 > git submodule update --init --recursive omero-mapr # timeout=10 > git submodule update --init --recursive omero-fpbioimage # timeout=10 > git submodule update --init --recursive omero-iviewer # timeout=10 > git submodule update --init --recursive omero-gallery # timeout=10 > git submodule update --init --recursive rOMERO-gateway # timeout=10 > git submodule update --init --recursive omero-weberror # timeout=10 > git submodule update --init --recursive omero-cli-render # timeout=10 > git submodule update --init --recursive omero-cli-duplicate # timeout=10 > git submodule update --init --recursive omero-metadata # timeout=10 > git submodule update --init --recursive omero-webtest # timeout=10 > git submodule update --init --recursive omero-upload # timeout=10 [Pipeline] pwd [Pipeline] copyArtifacts Copied 1 artifact from "OMERO-build-push" build number 546 [Pipeline] sh + pushd build ~/workspace/OMERO-plugins-push/build ~/workspace/OMERO-plugins-push + curl -sfL https://github.com/ome/build-infra/archive/master.tar.gz + tar -zxf - + popd ~/workspace/OMERO-plugins-push + python3.11 -m venv build/venv > git submodule update --init --recursive omero-virtual-microscope # timeout=10 > git submodule update --init --recursive omero-rois # timeout=10 > git submodule update --init --recursive omero-signup # timeout=10 > git submodule update --init --recursive omero-web-zarr # timeout=10 > git submodule update --init --recursive omero-cli-zarr # timeout=10 + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-plugins-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-plugins-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(venv) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + python3.11 -m pip install -U pip Requirement already satisfied: pip in ./build/venv/lib64/python3.11/site-packages (22.3.1) Collecting pip Using cached pip-25.2-py3-none-any.whl (1.8 MB) Installing collected packages: pip Attempting uninstall: pip Found existing installation: pip 22.3.1 Uninstalling pip-22.3.1: Successfully uninstalled pip-22.3.1 Successfully installed pip-25.2 + python3.11 -m pip install scc Collecting scc Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB) Collecting PyGithub>=1.54 (from scc) Using cached pygithub-2.8.1-py3-none-any.whl.metadata (3.9 kB) Collecting PyYAML>=5.1 (from scc) Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) Collecting future (from scc) Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) Collecting ruamel.yaml (from scc) Using cached ruamel.yaml-0.18.15-py3-none-any.whl.metadata (25 kB) Collecting ruamel.yaml.jinja2 (from scc) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB) Collecting six (from scc) Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) Collecting urllib3<2 (from scc) Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB) Collecting yaclifw<0.3,>=0.2.0 (from scc) Using cached yaclifw-0.2.0-py3-none-any.whl Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc) Using cached pynacl-1.6.0-cp38-abi3-manylinux_2_34_x86_64.whl.metadata (9.4 kB) Collecting requests>=2.14.0 (from PyGithub>=1.54->scc) Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB) Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached PyJWT-2.10.1-py3-none-any.whl.metadata (4.0 kB) Collecting typing-extensions>=4.5.0 (from PyGithub>=1.54->scc) Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB) Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cryptography-45.0.7-cp311-abi3-manylinux_2_34_x86_64.whl.metadata (5.7 kB) Collecting cffi>=1.14 (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cffi-2.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (2.6 kB) Collecting pycparser (from cffi>=1.14->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached pycparser-2.23-py3-none-any.whl.metadata (993 bytes) Collecting charset_normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached charset_normalizer-3.4.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (36 kB) Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached idna-3.10-py3-none-any.whl.metadata (10 kB) Collecting certifi>=2017.4.17 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached certifi-2025.8.3-py3-none-any.whl.metadata (2.4 kB) Collecting ruamel.yaml.clib>=0.2.7 (from ruamel.yaml->scc) Using cached ruamel.yaml.clib-0.2.12-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.7 kB) Using cached scc-0.20.0-py3-none-any.whl (48 kB) Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) Using cached pygithub-2.8.1-py3-none-any.whl (432 kB) Using cached PyJWT-2.10.1-py3-none-any.whl (22 kB) Using cached cryptography-45.0.7-cp311-abi3-manylinux_2_34_x86_64.whl (4.5 MB) Using cached cffi-2.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (215 kB) Using cached pynacl-1.6.0-cp38-abi3-manylinux_2_34_x86_64.whl (1.4 MB) Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB) Using cached requests-2.32.5-py3-none-any.whl (64 kB) Using cached charset_normalizer-3.4.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (150 kB) Using cached idna-3.10-py3-none-any.whl (70 kB) Using cached certifi-2025.8.3-py3-none-any.whl (161 kB) Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB) Using cached future-1.0.0-py3-none-any.whl (491 kB) Using cached pycparser-2.23-py3-none-any.whl (118 kB) Using cached ruamel.yaml-0.18.15-py3-none-any.whl (119 kB) Using cached ruamel.yaml.clib-0.2.12-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (739 kB) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB) Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) Installing collected packages: urllib3, typing-extensions, six, ruamel.yaml.clib, PyYAML, pyjwt, pycparser, idna, future, charset_normalizer, certifi, yaclifw, ruamel.yaml, requests, cffi, ruamel.yaml.jinja2, pynacl, cryptography, PyGithub, scc Successfully installed PyGithub-2.8.1 PyYAML-6.0.2 certifi-2025.8.3 cffi-2.0.0 charset_normalizer-3.4.3 cryptography-45.0.7 future-1.0.0 idna-3.10 pycparser-2.23 pyjwt-2.10.1 pynacl-1.6.0 requests-2.32.5 ruamel.yaml-0.18.15 ruamel.yaml.clib-0.2.12 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.17.0 typing-extensions-4.15.0 urllib3-1.26.20 yaclifw-0.2.0 [Pipeline] sh + export BASE_REPO=omero-plugins.git + BASE_REPO=omero-plugins.git + export BASE_BRANCH=master + BASE_BRANCH=master + export VERSION_LOG=/home/omero/workspace/OMERO-plugins-push/build/version.tsv + VERSION_LOG=/home/omero/workspace/OMERO-plugins-push/build/version.tsv + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-plugins-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-plugins-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(venv) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + '[' merge_ci '!=' null ']' + export PUSH_BRANCH=merge_ci + PUSH_BRANCH=merge_ci + '[' null '!=' null ']' + export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment' + STATUS=success-only + MERGE_OPTIONS='-vvv --no-ask --reset --comment' + bash build/build-infra-master/recursive-merge Merge base repository (no submodule updates) 2025-09-13 00:41:43,674 [ scc.config] DEBUG Found github.token 2025-09-13 00:41:43,676 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-09-13 00:41:43,855 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:41:44,249 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:41:44,625 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2025-09-13 00:41:44,626 [ scc.gh] DEBUG 4291 remaining from 5000 (Reset at 01:09 2025-09-13 00:41:44,626 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-13 00:41:44,629 [ scc.git] DEBUG Check current status 2025-09-13 00:41:44,629 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-13 00:41:44,632 [ scc.git] DEBUG 84258d5 Merge pull request #426 from ome/dependabot/submodules/omero-prometheus-tools-eb47378 2025-09-13 00:41:44,632 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-13 00:41:44,682 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (remotes/origin/HEAD) 2025-09-13 00:41:44,686 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2025-09-13 00:41:44,690 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c) 2025-09-13 00:41:44,694 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587) 2025-09-13 00:41:44,699 [ scc.git] DEBUG fb316a7ee6ca8aa5bc8dc55dd0acfa88fe3ca228 omero-figure (v7.2.0-1-gfb316a7e) 2025-09-13 00:41:44,702 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2025-09-13 00:41:44,706 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2025-09-13 00:41:44,710 [ scc.git] DEBUG b4102d46958a805cacff0c7ccceb05ccff746309 omero-iviewer (v0.15.0-1-gb4102d4) 2025-09-13 00:41:44,713 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2025-09-13 00:41:44,717 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c) 2025-09-13 00:41:44,720 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2025-09-13 00:41:44,724 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2025-09-13 00:41:44,728 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2025-09-13 00:41:44,731 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2025-09-13 00:41:44,735 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6) 2025-09-13 00:41:44,738 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2025-09-13 00:41:44,741 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2025-09-13 00:41:44,744 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313) 2025-09-13 00:41:44,748 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2025-09-13 00:41:44,751 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2025-09-13 00:41:44,754 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2025-09-13 00:41:44,758 [ scc.git] DEBUG 312afbed633613e1f728a1fe9eaac096e54318e0 scripts (v5.8.3-1-g312afbe) 2025-09-13 00:41:44,761 [ scc.config] DEBUG Found remote.origin.url 2025-09-13 00:41:45,199 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins HTTP/1.1" 200 None 2025-09-13 00:41:45,651 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-13 00:41:46,075 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-13 00:41:46,526 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-13 00:41:46,936 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-13 00:41:46,937 [ scc.git] DEBUG Resetting... 2025-09-13 00:41:46,937 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2025-09-13 00:41:46,945 [ scc.git] DEBUG HEAD is now at 84258d5 Merge pull request #426 from ome/dependabot/submodules/omero-prometheus-tools-eb47378 2025-09-13 00:41:46,945 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2025-09-13 00:41:47,057 [ scc.git] DEBUG Check current status 2025-09-13 00:41:47,057 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-13 00:41:47,060 [ scc.git] DEBUG 84258d5 Merge pull request #426 from ome/dependabot/submodules/omero-prometheus-tools-eb47378 2025-09-13 00:41:47,060 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-13 00:41:47,110 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (remotes/origin/HEAD) 2025-09-13 00:41:47,113 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2025-09-13 00:41:47,117 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c) 2025-09-13 00:41:47,121 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587) 2025-09-13 00:41:47,126 [ scc.git] DEBUG fb316a7ee6ca8aa5bc8dc55dd0acfa88fe3ca228 omero-figure (v7.2.0-1-gfb316a7e) 2025-09-13 00:41:47,129 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2025-09-13 00:41:47,133 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2025-09-13 00:41:47,137 [ scc.git] DEBUG b4102d46958a805cacff0c7ccceb05ccff746309 omero-iviewer (v0.15.0-1-gb4102d4) 2025-09-13 00:41:47,140 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2025-09-13 00:41:47,144 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c) 2025-09-13 00:41:47,147 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2025-09-13 00:41:47,150 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2025-09-13 00:41:47,154 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2025-09-13 00:41:47,158 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2025-09-13 00:41:47,161 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6) 2025-09-13 00:41:47,165 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2025-09-13 00:41:47,168 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2025-09-13 00:41:47,171 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313) 2025-09-13 00:41:47,174 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2025-09-13 00:41:47,177 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2025-09-13 00:41:47,180 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2025-09-13 00:41:47,184 [ scc.git] DEBUG 312afbed633613e1f728a1fe9eaac096e54318e0 scripts (v5.8.3-1-g312afbe) 2025-09-13 00:41:47,185 [ scc.merge] INFO Merging Pull Request(s) based on master 2025-09-13 00:41:47,185 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2025-09-13 00:41:47,185 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2025-09-13 00:41:47,185 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2025-09-13 00:41:47,185 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2025-09-13 00:41:47,185 [ scc.repo] DEBUG ## PRs found: 2025-09-13 00:41:47,425 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/pulls HTTP/1.1" 200 None 2025-09-13 00:41:47,904 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/433 HTTP/1.1" 200 None 2025-09-13 00:41:47,905 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-13 00:41:47,905 [ scc.repo] DEBUG - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2025-09-13 00:41:48,376 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/432 HTTP/1.1" 200 None 2025-09-13 00:41:48,377 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-13 00:41:48,377 [ scc.repo] DEBUG - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2025-09-13 00:41:48,867 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/429 HTTP/1.1" 200 None 2025-09-13 00:41:48,867 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-13 00:41:48,868 [ scc.repo] DEBUG - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2025-09-13 00:41:48,868 [ scc.repo] DEBUG ## Branches found: 2025-09-13 00:41:48,868 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:41:48,868 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:41:48,870 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-13 00:41:48,873 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-13 00:41:48,873 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-13 00:41:48,876 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-13 00:41:48,878 [ scc.git] DEBUG Already up to date. 2025-09-13 00:41:48,878 [ scc.git] DEBUG Calling 'git fetch origin pull/429/head' 2025-09-13 00:41:49,165 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2025-09-13 00:41:49,165 [ scc.git] DEBUG * branch refs/pull/429/head -> FETCH_HEAD 2025-09-13 00:41:49,173 [ scc.git] DEBUG Calling 'git fetch origin pull/432/head' 2025-09-13 00:41:49,453 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2025-09-13 00:41:49,453 [ scc.git] DEBUG * branch refs/pull/432/head -> FETCH_HEAD 2025-09-13 00:41:49,460 [ scc.git] DEBUG Calling 'git fetch origin pull/433/head' 2025-09-13 00:41:49,740 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2025-09-13 00:41:49,740 [ scc.git] DEBUG * branch refs/pull/433/head -> FETCH_HEAD 2025-09-13 00:41:49,747 [ scc.git] DEBUG ## Unique users: [] 2025-09-13 00:41:49,747 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:41:49,747 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:41:49,749 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2025-09-13 00:41:49,752 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:41:49,754 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 429 (Bump scripts from `312afbe` to `4b4c755`) 3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2025-09-13 00:41:49,771 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-13 00:41:49,774 [ scc.git] DEBUG scripts | 2 +- 2025-09-13 00:41:49,774 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-09-13 00:41:49,918 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:41:49,919 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25bf90a85a7e0945e652f9d78050c8c4860acb51' 2025-09-13 00:41:49,922 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:41:49,924 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 432 (Bump omero-figure from `fb316a7` to `9cc36cd`) 25bf90a85a7e0945e652f9d78050c8c4860acb51' 2025-09-13 00:41:49,940 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-13 00:41:49,943 [ scc.git] DEBUG omero-figure | 2 +- 2025-09-13 00:41:49,943 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-09-13 00:41:50,314 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:41:50,314 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6fd5dc72efc90d7f749b332dba3f903414852d74' 2025-09-13 00:41:50,318 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:41:50,320 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 433 (Bump omero-iviewer from `b4102d4` to `7a798ce`) 6fd5dc72efc90d7f749b332dba3f903414852d74' 2025-09-13 00:41:50,337 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-13 00:41:50,340 [ scc.git] DEBUG omero-iviewer | 2 +- 2025-09-13 00:41:50,340 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-09-13 00:41:50,701 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:41:50,701 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-13 00:41:50,768 [ scc.git] DEBUG Submodule path 'omero-figure': checked out '9cc36cde05bde4def7b62b07c2e9ae5f66712e96' 2025-09-13 00:41:50,799 [ scc.git] DEBUG Submodule path 'omero-iviewer': checked out '7a798ceeb3926d049d73788555fb63269a071052' 2025-09-13 00:41:50,815 [ scc.git] DEBUG Submodule path 'scripts': checked out '4b4c755af4ccf8a5e709548d1f8415fab48a4867' 2025-09-13 00:41:50,816 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:41:50,816 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:41:50,818 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-13 00:41:50,911 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fcea6bb0790> has no local changes 2025-09-13 00:41:50,911 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone Repository: ome/omero-plugins Already up to date. Merged PRs: - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' Generated by OMERO-plugins-push#531 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/531/)' 2025-09-13 00:41:50,992 [ scc.git] DEBUG [detached HEAD 953883a] merge master -Dorg -Snone 2025-09-13 00:41:50,993 [ scc.merge] INFO Repository: ome/omero-plugins 2025-09-13 00:41:50,993 [ scc.merge] INFO Already up to date. 2025-09-13 00:41:50,993 [ scc.merge] INFO 2025-09-13 00:41:50,993 [ scc.merge] INFO Merged PRs: 2025-09-13 00:41:50,993 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2025-09-13 00:41:50,993 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2025-09-13 00:41:50,993 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2025-09-13 00:41:50,993 [ scc.merge] INFO 2025-09-13 00:41:50,993 [ scc.merge] DEBUG Cleaning remote branches created for merging 2025-09-13 00:41:50,993 [ scc.git] DEBUG Calling 'git remote' Synchronizing submodule url for 'minimal-omero-client' Synchronizing submodule url for 'omero-cli-duplicate' Synchronizing submodule url for 'omero-cli-render' Synchronizing submodule url for 'omero-cli-zarr' Synchronizing submodule url for 'omero-figure' Synchronizing submodule url for 'omero-fpbioimage' Synchronizing submodule url for 'omero-gallery' Synchronizing submodule url for 'omero-iviewer' Synchronizing submodule url for 'omero-mapr' Synchronizing submodule url for 'omero-metadata' Synchronizing submodule url for 'omero-parade' Synchronizing submodule url for 'omero-prometheus-tools' Synchronizing submodule url for 'omero-rois' Synchronizing submodule url for 'omero-signup' Synchronizing submodule url for 'omero-test-infra' Synchronizing submodule url for 'omero-upload' Synchronizing submodule url for 'omero-virtual-microscope' Synchronizing submodule url for 'omero-web-zarr' Synchronizing submodule url for 'omero-weberror' Synchronizing submodule url for 'omero-webtest' Synchronizing submodule url for 'rOMERO-gateway' Synchronizing submodule url for 'scripts' Submodule path 'omero-cli-zarr': checked out 'f7eea7cd6c149e1c5b2e4648753ac0a1f8a65dfb' From https://github.com/ome/omero-figure d2c6f5bc..66607c99 master -> origin/master Submodule path 'omero-figure': checked out '66607c99ef10bf7997fe30f3813c6f90c401783a' Submodule path 'omero-iviewer': checked out 'bb94cf8da960e3283090038b04432f301560f5e4' Submodule path 'omero-metadata': checked out '55060a256e99567f21e64ff3c225d933fba1c501' Submodule path 'omero-virtual-microscope': checked out '160d894dfb61e69618903425b340c7888f3a934f' Submodule path 'omero-web-zarr': checked out '00e02072dc29b04eba14c080ca8a0175a1499c15' Submodule path 'scripts': checked out '03b9116196e1a799dd18a666559613d912be01a5' Merge all submodules using repository configuration: base-branch: master submodules: scripts: base-branch: develop omero-web-zarr: base-branch: main 2025-09-13 00:41:58,616 [ scc.config] DEBUG Found github.token 2025-09-13 00:41:58,617 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-09-13 00:41:58,817 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:41:59,210 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:41:59,594 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2025-09-13 00:41:59,595 [ scc.gh] DEBUG 4277 remaining from 5000 (Reset at 01:09 2025-09-13 00:41:59,595 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-13 00:41:59,598 [ scc.git] DEBUG Check current status 2025-09-13 00:41:59,598 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-13 00:41:59,601 [ scc.git] DEBUG 953883a merge master -Dorg -Snone 2025-09-13 00:41:59,601 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-13 00:41:59,654 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (remotes/origin/HEAD) 2025-09-13 00:41:59,657 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2025-09-13 00:41:59,661 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c) 2025-09-13 00:41:59,665 [ scc.git] DEBUG +f7eea7cd6c149e1c5b2e4648753ac0a1f8a65dfb omero-cli-zarr (v0.6.1-1-gf7eea7c) 2025-09-13 00:41:59,673 [ scc.git] DEBUG +66607c99ef10bf7997fe30f3813c6f90c401783a omero-figure (v7.2.1-82-g66607c99) 2025-09-13 00:41:59,676 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2025-09-13 00:41:59,680 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2025-09-13 00:41:59,684 [ scc.git] DEBUG +bb94cf8da960e3283090038b04432f301560f5e4 omero-iviewer (v0.16.0-16-gbb94cf8) 2025-09-13 00:41:59,688 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2025-09-13 00:41:59,692 [ scc.git] DEBUG +55060a256e99567f21e64ff3c225d933fba1c501 omero-metadata (v0.13.0-8-g55060a2) 2025-09-13 00:41:59,695 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2025-09-13 00:41:59,698 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2025-09-13 00:41:59,703 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2025-09-13 00:41:59,706 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2025-09-13 00:41:59,710 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6) 2025-09-13 00:41:59,713 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2025-09-13 00:41:59,716 [ scc.git] DEBUG +160d894dfb61e69618903425b340c7888f3a934f omero-virtual-microscope (v1.1.1-12-g160d894) 2025-09-13 00:41:59,719 [ scc.git] DEBUG +00e02072dc29b04eba14c080ca8a0175a1499c15 omero-web-zarr (v0.1.1-10-g00e0207) 2025-09-13 00:41:59,723 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2025-09-13 00:41:59,726 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2025-09-13 00:41:59,729 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2025-09-13 00:41:59,733 [ scc.git] DEBUG +03b9116196e1a799dd18a666559613d912be01a5 scripts (v5.9.1-3-g03b9116) 2025-09-13 00:41:59,736 [ scc.config] DEBUG Found remote.origin.url 2025-09-13 00:41:59,736 [ scc.git] DEBUG Reading repository configuration from repositories.yml 2025-09-13 00:41:59,738 [ scc.git] DEBUG Repository configuration: base-branch: master submodules: omero-web-zarr: base-branch: main scripts: base-branch: develop 2025-09-13 00:42:00,102 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins HTTP/1.1" 200 None 2025-09-13 00:42:00,559 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-13 00:42:01,005 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-13 00:42:01,422 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-13 00:42:01,845 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-13 00:42:01,846 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-13 00:42:01,931 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client 2025-09-13 00:42:01,931 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-13 00:42:01,934 [ scc.git] DEBUG Check current status 2025-09-13 00:42:01,934 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-13 00:42:01,937 [ scc.git] DEBUG ca8c2ea Merge pull request #67 from jburel/gateway_5_10_0 2025-09-13 00:42:01,937 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-13 00:42:01,979 [ scc.config] DEBUG Found remote.origin.url 2025-09-13 00:42:02,370 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/minimal-omero-client HTTP/1.1" 200 None 2025-09-13 00:42:02,853 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-13 00:42:03,312 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-13 00:42:03,757 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-13 00:42:04,165 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-13 00:42:04,166 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-13 00:42:04,209 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:42:04,210 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate 2025-09-13 00:42:04,210 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-13 00:42:04,212 [ scc.git] DEBUG Check current status 2025-09-13 00:42:04,212 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-13 00:42:04,215 [ scc.git] DEBUG 4777ef8 Merge pull request #27 from jburel/build 2025-09-13 00:42:04,215 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-13 00:42:04,257 [ scc.config] DEBUG Found remote.origin.url 2025-09-13 00:42:04,702 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate HTTP/1.1" 200 None 2025-09-13 00:42:05,176 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-13 00:42:05,584 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-13 00:42:05,995 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-13 00:42:06,440 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-13 00:42:06,441 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-13 00:42:06,482 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:42:06,483 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render 2025-09-13 00:42:06,483 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-13 00:42:06,485 [ scc.git] DEBUG Check current status 2025-09-13 00:42:06,485 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-13 00:42:06,488 [ scc.git] DEBUG ce6e13c Merge pull request #62 from dominikl/export 2025-09-13 00:42:06,488 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-13 00:42:06,531 [ scc.config] DEBUG Found remote.origin.url 2025-09-13 00:42:06,963 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render HTTP/1.1" 200 None 2025-09-13 00:42:07,410 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-13 00:42:07,830 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-13 00:42:08,235 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-13 00:42:08,648 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-13 00:42:08,649 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-13 00:42:08,691 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:42:08,691 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr 2025-09-13 00:42:08,692 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-13 00:42:08,694 [ scc.git] DEBUG Check current status 2025-09-13 00:42:08,694 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-13 00:42:08,696 [ scc.git] DEBUG f7eea7c Bump version: 0.6.1 → 0.6.2.dev0 2025-09-13 00:42:08,697 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-13 00:42:08,740 [ scc.config] DEBUG Found remote.origin.url 2025-09-13 00:42:09,161 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr HTTP/1.1" 200 None 2025-09-13 00:42:09,636 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-13 00:42:10,061 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-13 00:42:10,462 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-13 00:42:10,899 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-13 00:42:10,900 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-13 00:42:10,941 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:42:10,942 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure 2025-09-13 00:42:10,942 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-13 00:42:10,945 [ scc.git] DEBUG Check current status 2025-09-13 00:42:10,945 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-13 00:42:10,948 [ scc.git] DEBUG 66607c99 Merge pull request #605 from MinaEnayat/calib_bar 2025-09-13 00:42:10,948 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-13 00:42:10,991 [ scc.config] DEBUG Found remote.origin.url 2025-09-13 00:42:11,425 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure HTTP/1.1" 200 None 2025-09-13 00:42:11,911 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-13 00:42:12,456 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-13 00:42:12,911 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-13 00:42:13,334 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-13 00:42:13,335 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-13 00:42:13,378 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:42:13,378 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage 2025-09-13 00:42:13,378 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-13 00:42:13,380 [ scc.git] DEBUG Check current status 2025-09-13 00:42:13,380 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-13 00:42:13,383 [ scc.git] DEBUG 3b6c05a Merge pull request #30 from jburel/build 2025-09-13 00:42:13,383 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-13 00:42:13,426 [ scc.config] DEBUG Found remote.origin.url 2025-09-13 00:42:13,825 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage HTTP/1.1" 200 None 2025-09-13 00:42:14,302 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-13 00:42:14,714 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-13 00:42:15,148 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-13 00:42:15,580 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-13 00:42:15,580 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-13 00:42:15,624 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:42:15,624 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery 2025-09-13 00:42:15,624 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-13 00:42:15,627 [ scc.git] DEBUG Check current status 2025-09-13 00:42:15,627 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-13 00:42:15,630 [ scc.git] DEBUG 2a621da Merge pull request #112 from jburel/build 2025-09-13 00:42:15,630 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-13 00:42:15,673 [ scc.config] DEBUG Found remote.origin.url 2025-09-13 00:42:16,156 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery HTTP/1.1" 200 None 2025-09-13 00:42:16,611 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-13 00:42:17,021 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-13 00:42:17,440 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-13 00:42:17,890 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-13 00:42:17,891 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-13 00:42:17,934 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:42:17,935 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer 2025-09-13 00:42:17,935 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-13 00:42:17,937 [ scc.git] DEBUG Check current status 2025-09-13 00:42:17,937 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-13 00:42:17,940 [ scc.git] DEBUG bb94cf8 Merge pull request #506 from will-moore/pypi_release_action 2025-09-13 00:42:17,940 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-13 00:42:17,984 [ scc.config] DEBUG Found remote.origin.url 2025-09-13 00:42:18,396 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer HTTP/1.1" 200 None 2025-09-13 00:42:18,854 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-13 00:42:19,263 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-13 00:42:19,680 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-13 00:42:20,086 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-13 00:42:20,087 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-13 00:42:20,130 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:42:20,130 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr 2025-09-13 00:42:20,130 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-13 00:42:20,133 [ scc.git] DEBUG Check current status 2025-09-13 00:42:20,133 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-13 00:42:20,135 [ scc.git] DEBUG 0a557da Bump version: 0.5.3 → 0.5.4.dev0 2025-09-13 00:42:20,135 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-13 00:42:20,178 [ scc.config] DEBUG Found remote.origin.url 2025-09-13 00:42:20,579 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr HTTP/1.1" 200 None 2025-09-13 00:42:21,036 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-13 00:42:21,474 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-13 00:42:21,895 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-13 00:42:22,311 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-13 00:42:22,312 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-13 00:42:22,354 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:42:22,354 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata 2025-09-13 00:42:22,354 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-13 00:42:22,356 [ scc.git] DEBUG Check current status 2025-09-13 00:42:22,356 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-13 00:42:22,359 [ scc.git] DEBUG 55060a2 Merge pull request #90 from will-moore/pypi_release_action 2025-09-13 00:42:22,359 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-13 00:42:22,403 [ scc.config] DEBUG Found remote.origin.url 2025-09-13 00:42:23,329 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata HTTP/1.1" 200 None 2025-09-13 00:42:23,784 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-13 00:42:24,236 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-13 00:42:24,672 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-13 00:42:25,111 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-13 00:42:25,112 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-13 00:42:25,154 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:42:25,155 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade 2025-09-13 00:42:25,155 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-13 00:42:25,157 [ scc.git] DEBUG Check current status 2025-09-13 00:42:25,157 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-13 00:42:25,160 [ scc.git] DEBUG fb5ae86 Merge pull request #133 from jburel/build 2025-09-13 00:42:25,160 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-13 00:42:25,201 [ scc.config] DEBUG Found remote.origin.url 2025-09-13 00:42:25,648 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade HTTP/1.1" 200 None 2025-09-13 00:42:26,107 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-13 00:42:26,505 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-13 00:42:26,909 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-13 00:42:27,321 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-13 00:42:27,322 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-13 00:42:27,364 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:42:27,364 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools 2025-09-13 00:42:27,365 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-13 00:42:27,367 [ scc.git] DEBUG Check current status 2025-09-13 00:42:27,367 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-13 00:42:27,369 [ scc.git] DEBUG eb47378 Merge pull request #15 from jburel/build 2025-09-13 00:42:27,370 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-13 00:42:27,413 [ scc.config] DEBUG Found remote.origin.url 2025-09-13 00:42:27,848 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools HTTP/1.1" 200 None 2025-09-13 00:42:28,292 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-13 00:42:28,708 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-13 00:42:29,126 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-13 00:42:29,523 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-13 00:42:29,524 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-13 00:42:29,567 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:42:29,568 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois 2025-09-13 00:42:29,568 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-13 00:42:29,570 [ scc.git] DEBUG Check current status 2025-09-13 00:42:29,570 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-13 00:42:29,572 [ scc.git] DEBUG bdfeb5e bump sphinx version 2025-09-13 00:42:29,572 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-13 00:42:29,616 [ scc.config] DEBUG Found remote.origin.url 2025-09-13 00:42:30,125 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois HTTP/1.1" 200 None 2025-09-13 00:42:30,583 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-13 00:42:30,984 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-13 00:42:31,394 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-13 00:42:31,823 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-13 00:42:31,823 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-13 00:42:31,865 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:42:31,866 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup 2025-09-13 00:42:31,866 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-13 00:42:31,868 [ scc.git] DEBUG Check current status 2025-09-13 00:42:31,868 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-13 00:42:31,870 [ scc.git] DEBUG be76813 Merge pull request #21 from jburel/build 2025-09-13 00:42:31,871 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-13 00:42:31,916 [ scc.config] DEBUG Found remote.origin.url 2025-09-13 00:42:32,329 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup HTTP/1.1" 200 None 2025-09-13 00:42:32,840 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-13 00:42:33,269 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-13 00:42:33,667 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-13 00:42:34,064 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-13 00:42:34,065 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-13 00:42:34,106 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:42:34,107 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra 2025-09-13 00:42:34,107 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-13 00:42:34,109 [ scc.git] DEBUG Check current status 2025-09-13 00:42:34,109 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-13 00:42:34,111 [ scc.git] DEBUG cda3ec6 Merge pull request #70 from jburel/toml_support 2025-09-13 00:42:34,112 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-13 00:42:34,156 [ scc.config] DEBUG Found remote.origin.url 2025-09-13 00:42:34,488 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-test-infra HTTP/1.1" 301 198 Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 2025-09-13 00:42:34,490 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 2025-09-13 00:42:34,784 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/111908919 HTTP/1.1" 200 None 2025-09-13 00:42:35,225 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-13 00:42:35,663 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-13 00:42:36,070 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-13 00:42:36,482 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-13 00:42:36,483 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-13 00:42:36,525 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:42:36,525 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload 2025-09-13 00:42:36,525 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-13 00:42:36,528 [ scc.git] DEBUG Check current status 2025-09-13 00:42:36,528 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-13 00:42:36,530 [ scc.git] DEBUG 100f6ae Merge pull request #13 from jburel/build 2025-09-13 00:42:36,531 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-13 00:42:36,574 [ scc.config] DEBUG Found remote.origin.url 2025-09-13 00:42:36,953 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload HTTP/1.1" 200 None 2025-09-13 00:42:37,423 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-13 00:42:37,844 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-13 00:42:38,258 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-13 00:42:38,677 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-13 00:42:38,678 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-13 00:42:38,721 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:42:38,721 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope 2025-09-13 00:42:38,721 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-13 00:42:38,723 [ scc.git] DEBUG Check current status 2025-09-13 00:42:38,724 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-13 00:42:38,726 [ scc.git] DEBUG 160d894 Fix display of code 2025-09-13 00:42:38,726 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-13 00:42:38,771 [ scc.config] DEBUG Found remote.origin.url 2025-09-13 00:42:39,202 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope HTTP/1.1" 200 None 2025-09-13 00:42:39,705 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-13 00:42:40,135 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-13 00:42:40,566 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-13 00:42:40,966 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-13 00:42:40,967 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-13 00:42:41,009 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:42:41,010 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr 2025-09-13 00:42:41,010 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-13 00:42:41,012 [ scc.git] DEBUG Check current status 2025-09-13 00:42:41,012 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-13 00:42:41,015 [ scc.git] DEBUG 00e0207 Merge pull request #20 from will-moore/zarr_python_v3 2025-09-13 00:42:41,015 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-13 00:42:41,058 [ scc.config] DEBUG Found remote.origin.url 2025-09-13 00:42:41,058 [ scc.git] DEBUG Repository configuration: base-branch: main 2025-09-13 00:42:41,470 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr HTTP/1.1" 200 None 2025-09-13 00:42:41,923 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-13 00:42:42,379 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-13 00:42:42,778 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-13 00:42:43,197 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-13 00:42:43,197 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-13 00:42:43,241 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:42:43,242 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror 2025-09-13 00:42:43,242 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-13 00:42:43,244 [ scc.git] DEBUG Check current status 2025-09-13 00:42:43,244 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-13 00:42:43,246 [ scc.git] DEBUG 70b01ed Merge pull request #24 from jburel/build 2025-09-13 00:42:43,247 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-13 00:42:43,289 [ scc.config] DEBUG Found remote.origin.url 2025-09-13 00:42:43,627 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-weberror HTTP/1.1" 301 197 Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 2025-09-13 00:42:43,628 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 2025-09-13 00:42:43,887 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/38373425 HTTP/1.1" 200 None 2025-09-13 00:42:44,354 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-13 00:42:44,752 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-13 00:42:45,194 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-13 00:42:45,604 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-13 00:42:45,605 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-13 00:42:45,648 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:42:45,649 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest 2025-09-13 00:42:45,649 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-13 00:42:45,651 [ scc.git] DEBUG Check current status 2025-09-13 00:42:45,651 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-13 00:42:45,654 [ scc.git] DEBUG 5bfef29 Merge pull request #36 from jburel/build 2025-09-13 00:42:45,654 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-13 00:42:45,697 [ scc.config] DEBUG Found remote.origin.url 2025-09-13 00:42:46,030 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-webtest HTTP/1.1" 301 197 Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 2025-09-13 00:42:46,031 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 2025-09-13 00:42:46,325 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/25970383 HTTP/1.1" 200 None 2025-09-13 00:42:46,796 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-13 00:42:47,243 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-13 00:42:47,664 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-13 00:42:48,069 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-13 00:42:48,069 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-13 00:42:48,112 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:42:48,113 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway 2025-09-13 00:42:48,113 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-13 00:42:48,115 [ scc.git] DEBUG Check current status 2025-09-13 00:42:48,115 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-13 00:42:48,118 [ scc.git] DEBUG 7b5d64d Merge pull request #106 from dominikl/add_examples_2 2025-09-13 00:42:48,118 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-13 00:42:48,161 [ scc.config] DEBUG Found remote.origin.url 2025-09-13 00:42:48,573 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway HTTP/1.1" 200 None 2025-09-13 00:42:49,081 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-13 00:42:49,501 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-13 00:42:49,929 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-13 00:42:50,348 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-13 00:42:50,348 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-13 00:42:50,390 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:42:50,391 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts 2025-09-13 00:42:50,391 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-09-13 00:42:50,394 [ scc.git] DEBUG Check current status 2025-09-13 00:42:50,394 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-13 00:42:50,396 [ scc.git] DEBUG 03b9116 Merge pull request #228 from ome/dependabot/github_actions/dot-github/workflows/pypa/gh-action-pypi-publish-1.13.0 2025-09-13 00:42:50,397 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-13 00:42:50,440 [ scc.config] DEBUG Found remote.origin.url 2025-09-13 00:42:50,441 [ scc.git] DEBUG Repository configuration: base-branch: develop 2025-09-13 00:42:50,766 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/scripts HTTP/1.1" 301 196 Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2025-09-13 00:42:50,766 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2025-09-13 00:42:50,989 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/4865545 HTTP/1.1" 200 None 2025-09-13 00:42:51,480 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-09-13 00:42:51,885 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-09-13 00:42:52,286 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-09-13 00:42:52,697 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-09-13 00:42:52,698 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-13 00:42:52,740 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:42:52,740 [ scc.git] DEBUG Resetting... 2025-09-13 00:42:52,740 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2025-09-13 00:42:52,749 [ scc.git] DEBUG HEAD is now at 953883a merge master -Dorg -Snone 2025-09-13 00:42:52,749 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2025-09-13 00:42:52,815 [ scc.git] DEBUG Submodule path 'omero-cli-zarr': checked out '11d35873542022d9638ede115d0dfab4652f8e62' 2025-09-13 00:42:52,841 [ scc.git] DEBUG Submodule path 'omero-figure': checked out '9cc36cde05bde4def7b62b07c2e9ae5f66712e96' 2025-09-13 00:42:52,865 [ scc.git] DEBUG Submodule path 'omero-iviewer': checked out '7a798ceeb3926d049d73788555fb63269a071052' 2025-09-13 00:42:52,882 [ scc.git] DEBUG Submodule path 'omero-metadata': checked out '3cd120cf6f10f71421a4db91fa87baba865c7997' 2025-09-13 00:42:52,913 [ scc.git] DEBUG Submodule path 'omero-virtual-microscope': checked out 'deab81790f403bef598915b89b5300258b44a743' 2025-09-13 00:42:52,926 [ scc.git] DEBUG Submodule path 'omero-web-zarr': checked out '8f3c31388de8a7c44f18a6f0e20ea41d35fae041' 2025-09-13 00:42:52,954 [ scc.git] DEBUG Submodule path 'scripts': checked out '4b4c755af4ccf8a5e709548d1f8415fab48a4867' 2025-09-13 00:42:52,958 [ scc.git] DEBUG Check current status 2025-09-13 00:42:52,958 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-09-13 00:42:52,961 [ scc.git] DEBUG 953883a merge master -Dorg -Snone 2025-09-13 00:42:52,961 [ scc.git] DEBUG Calling 'git submodule status' 2025-09-13 00:42:53,010 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (remotes/origin/HEAD) 2025-09-13 00:42:53,013 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2025-09-13 00:42:53,017 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c) 2025-09-13 00:42:53,021 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587) 2025-09-13 00:42:53,026 [ scc.git] DEBUG 9cc36cde05bde4def7b62b07c2e9ae5f66712e96 omero-figure (v7.2.1-3-g9cc36cde) 2025-09-13 00:42:53,029 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2025-09-13 00:42:53,032 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2025-09-13 00:42:53,037 [ scc.git] DEBUG 7a798ceeb3926d049d73788555fb63269a071052 omero-iviewer (v0.16.0-14-g7a798ce) 2025-09-13 00:42:53,040 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2025-09-13 00:42:53,044 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c) 2025-09-13 00:42:53,047 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2025-09-13 00:42:53,050 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2025-09-13 00:42:53,054 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2025-09-13 00:42:53,058 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2025-09-13 00:42:53,062 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6) 2025-09-13 00:42:53,065 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2025-09-13 00:42:53,068 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2025-09-13 00:42:53,071 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313) 2025-09-13 00:42:53,074 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2025-09-13 00:42:53,078 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2025-09-13 00:42:53,081 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2025-09-13 00:42:53,085 [ scc.git] DEBUG 4b4c755af4ccf8a5e709548d1f8415fab48a4867 scripts (v5.9.0-1-g4b4c755) 2025-09-13 00:42:53,086 [ scc.merge] INFO Merging Pull Request(s) based on master 2025-09-13 00:42:53,086 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2025-09-13 00:42:53,086 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2025-09-13 00:42:53,086 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2025-09-13 00:42:53,086 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2025-09-13 00:42:53,086 [ scc.merge] INFO Excluding Pull Request(s) without successful status 2025-09-13 00:42:53,086 [ scc.repo] DEBUG ## PRs found: 2025-09-13 00:42:53,327 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/pulls HTTP/1.1" 200 None 2025-09-13 00:42:53,808 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/433 HTTP/1.1" 200 None 2025-09-13 00:42:53,809 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-13 00:42:54,369 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74 HTTP/1.1" 200 None 2025-09-13 00:42:54,824 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:42:55,430 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74 HTTP/1.1" 200 None 2025-09-13 00:42:56,010 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/6fd5dc72efc90d7f749b332dba3f903414852d74?per_page=1 HTTP/1.1" 200 2 2025-09-13 00:42:56,010 [ scc.repo] DEBUG - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2025-09-13 00:42:56,483 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/432 HTTP/1.1" 200 None 2025-09-13 00:42:56,484 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-13 00:42:57,010 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51 HTTP/1.1" 200 None 2025-09-13 00:42:57,538 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:42:58,068 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51 HTTP/1.1" 200 None 2025-09-13 00:42:58,468 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/25bf90a85a7e0945e652f9d78050c8c4860acb51?per_page=1 HTTP/1.1" 200 2 2025-09-13 00:42:58,469 [ scc.repo] DEBUG - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2025-09-13 00:42:58,944 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/429 HTTP/1.1" 200 None 2025-09-13 00:42:58,945 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-13 00:42:59,485 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2 HTTP/1.1" 200 None 2025-09-13 00:42:59,992 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:43:00,540 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2 HTTP/1.1" 200 None 2025-09-13 00:43:00,988 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/3062fb487d55aef3602ecee795b63ccb73d1f8e2?per_page=1 HTTP/1.1" 200 2 2025-09-13 00:43:00,989 [ scc.repo] DEBUG - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2025-09-13 00:43:00,989 [ scc.repo] DEBUG ## Branches found: 2025-09-13 00:43:00,989 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:43:00,989 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:43:00,991 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-13 00:43:00,994 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-13 00:43:00,994 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-13 00:43:00,997 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-13 00:43:01,000 [ scc.git] DEBUG Already up to date. 2025-09-13 00:43:01,000 [ scc.git] DEBUG Calling 'git fetch origin pull/429/head' 2025-09-13 00:43:01,299 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2025-09-13 00:43:01,299 [ scc.git] DEBUG * branch refs/pull/429/head -> FETCH_HEAD 2025-09-13 00:43:01,307 [ scc.git] DEBUG Calling 'git fetch origin pull/432/head' 2025-09-13 00:43:01,586 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2025-09-13 00:43:01,586 [ scc.git] DEBUG * branch refs/pull/432/head -> FETCH_HEAD 2025-09-13 00:43:01,593 [ scc.git] DEBUG Calling 'git fetch origin pull/433/head' 2025-09-13 00:43:01,882 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2025-09-13 00:43:01,882 [ scc.git] DEBUG * branch refs/pull/433/head -> FETCH_HEAD 2025-09-13 00:43:01,889 [ scc.git] DEBUG ## Unique users: [] 2025-09-13 00:43:01,890 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:43:01,890 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:43:01,892 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2025-09-13 00:43:01,895 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:43:01,897 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 429 (Bump scripts from `312afbe` to `4b4c755`) 3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2025-09-13 00:43:01,900 [ scc.git] DEBUG Already up to date. 2025-09-13 00:43:02,044 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:43:02,045 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25bf90a85a7e0945e652f9d78050c8c4860acb51' 2025-09-13 00:43:02,048 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:43:02,050 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 432 (Bump omero-figure from `fb316a7` to `9cc36cd`) 25bf90a85a7e0945e652f9d78050c8c4860acb51' 2025-09-13 00:43:02,052 [ scc.git] DEBUG Already up to date. 2025-09-13 00:43:02,444 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:43:02,444 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6fd5dc72efc90d7f749b332dba3f903414852d74' 2025-09-13 00:43:02,447 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:43:02,449 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 433 (Bump omero-iviewer from `b4102d4` to `7a798ce`) 6fd5dc72efc90d7f749b332dba3f903414852d74' 2025-09-13 00:43:02,452 [ scc.git] DEBUG Already up to date. 2025-09-13 00:43:02,831 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:43:02,831 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-13 00:43:02,888 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:43:02,888 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:43:02,890 [ scc.repo] DEBUG ## PRs found: 2025-09-13 00:43:03,247 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/minimal-omero-client/pulls HTTP/1.1" 200 2 2025-09-13 00:43:03,248 [ scc.repo] DEBUG ## Branches found: 2025-09-13 00:43:03,248 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client 2025-09-13 00:43:03,248 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:43:03,248 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:43:03,251 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-13 00:43:03,253 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-13 00:43:03,253 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-13 00:43:03,256 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-13 00:43:03,259 [ scc.git] DEBUG Already up to date. 2025-09-13 00:43:03,259 [ scc.git] DEBUG ## Unique users: [] 2025-09-13 00:43:03,259 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:43:03,259 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:43:03,261 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-13 00:43:03,303 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:43:03,303 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:43:03,305 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-13 00:43:03,346 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-13 00:43:03,349 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb405c2a950> has no local changes 2025-09-13 00:43:03,349 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/minimal-omero-client Already up to date. Generated by OMERO-plugins-push#531 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/531/)' 2025-09-13 00:43:03,356 [ scc.git] DEBUG [detached HEAD 3ff8785] merge master -Dorg -Ssuccess-only 2025-09-13 00:43:03,356 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:43:03,356 [ scc.repo] DEBUG ## PRs found: 2025-09-13 00:43:03,759 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/pulls HTTP/1.1" 200 None 2025-09-13 00:43:04,244 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/29 HTTP/1.1" 200 None 2025-09-13 00:43:04,245 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-13 00:43:04,804 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4 HTTP/1.1" 200 None 2025-09-13 00:43:05,310 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:43:05,835 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-13 00:43:06,431 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4 HTTP/1.1" 200 None 2025-09-13 00:43:06,858 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/statuses/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4?per_page=1 HTTP/1.1" 200 2 2025-09-13 00:43:06,858 [ scc.repo] DEBUG - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-13 00:43:07,332 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/18 HTTP/1.1" 200 None 2025-09-13 00:43:07,840 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/18/comments HTTP/1.1" 200 None 2025-09-13 00:43:07,841 [ scc.repo] DEBUG ## Branches found: 2025-09-13 00:43:07,841 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate 2025-09-13 00:43:07,841 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:43:07,841 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:43:07,845 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-13 00:43:07,847 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-13 00:43:07,847 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-13 00:43:07,850 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-13 00:43:07,853 [ scc.git] DEBUG Already up to date. 2025-09-13 00:43:07,853 [ scc.git] DEBUG Calling 'git fetch origin pull/29/head' 2025-09-13 00:43:08,136 [ scc.git] DEBUG From https://github.com/ome/omero-cli-duplicate 2025-09-13 00:43:08,137 [ scc.git] DEBUG * branch refs/pull/29/head -> FETCH_HEAD 2025-09-13 00:43:08,141 [ scc.git] DEBUG ## Unique users: [] 2025-09-13 00:43:08,141 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:43:08,141 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:43:08,144 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4' 2025-09-13 00:43:08,147 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:43:08,149 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 29 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4' 2025-09-13 00:43:08,158 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-13 00:43:08,161 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-09-13 00:43:08,161 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-09-13 00:43:08,298 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:43:08,299 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-13 00:43:08,342 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:43:08,342 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:43:08,345 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-13 00:43:08,386 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-13 00:43:08,390 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb405ee6510> has no local changes 2025-09-13 00:43:08,390 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-cli-duplicate Excluded PRs: - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment) Already up to date. Merged PRs: - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#531 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/531/)' 2025-09-13 00:43:08,397 [ scc.git] DEBUG [detached HEAD 2779690] merge master -Dorg -Ssuccess-only 2025-09-13 00:43:08,397 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:43:08,397 [ scc.repo] DEBUG ## PRs found: 2025-09-13 00:43:08,868 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls HTTP/1.1" 200 None 2025-09-13 00:43:09,345 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/73 HTTP/1.1" 200 None 2025-09-13 00:43:09,346 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-13 00:43:09,908 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/d230161123b7bbfcb9363e02bbe289367c532cdc HTTP/1.1" 200 None 2025-09-13 00:43:10,461 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/d230161123b7bbfcb9363e02bbe289367c532cdc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:43:10,948 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/d230161123b7bbfcb9363e02bbe289367c532cdc/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-13 00:43:11,448 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/d230161123b7bbfcb9363e02bbe289367c532cdc HTTP/1.1" 200 None 2025-09-13 00:43:12,314 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/statuses/d230161123b7bbfcb9363e02bbe289367c532cdc?per_page=1 HTTP/1.1" 200 2 2025-09-13 00:43:12,315 [ scc.repo] DEBUG - PR 73 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-13 00:43:12,796 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/71 HTTP/1.1" 200 None 2025-09-13 00:43:13,310 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/530b6b0ab1346ef837188b2eb3b1a5f679b490b6 HTTP/1.1" 200 None 2025-09-13 00:43:13,775 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/530b6b0ab1346ef837188b2eb3b1a5f679b490b6/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:43:14,273 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/530b6b0ab1346ef837188b2eb3b1a5f679b490b6 HTTP/1.1" 200 None 2025-09-13 00:43:14,701 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/statuses/530b6b0ab1346ef837188b2eb3b1a5f679b490b6?per_page=1 HTTP/1.1" 200 2 2025-09-13 00:43:14,701 [ scc.repo] DEBUG - PR 71 dominikl 'Escape slash character in image names' 2025-09-13 00:43:15,151 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/70 HTTP/1.1" 200 None 2025-09-13 00:43:15,616 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/69 HTTP/1.1" 200 None 2025-09-13 00:43:16,126 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/eb65a6621a6b07771ed3410c81ddaa1731004c22 HTTP/1.1" 200 None 2025-09-13 00:43:16,632 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/eb65a6621a6b07771ed3410c81ddaa1731004c22/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:43:17,101 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/eb65a6621a6b07771ed3410c81ddaa1731004c22/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-13 00:43:17,523 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/eb65a6621a6b07771ed3410c81ddaa1731004c22 HTTP/1.1" 200 None 2025-09-13 00:43:17,945 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/statuses/eb65a6621a6b07771ed3410c81ddaa1731004c22?per_page=1 HTTP/1.1" 200 2 2025-09-13 00:43:17,945 [ scc.repo] DEBUG - PR 69 dominikl 'Fix help text for impo/export commands' 2025-09-13 00:43:18,419 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/59 HTTP/1.1" 200 None 2025-09-13 00:43:18,875 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/59/comments HTTP/1.1" 200 None 2025-09-13 00:43:19,404 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/75fc40970592eca2babd405b65a372f328fb679a HTTP/1.1" 200 None 2025-09-13 00:43:19,907 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/75fc40970592eca2babd405b65a372f328fb679a/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:43:20,399 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/75fc40970592eca2babd405b65a372f328fb679a/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-13 00:43:20,871 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/75fc40970592eca2babd405b65a372f328fb679a HTTP/1.1" 200 None 2025-09-13 00:43:21,283 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/statuses/75fc40970592eca2babd405b65a372f328fb679a?per_page=1 HTTP/1.1" 200 2 2025-09-13 00:43:21,283 [ scc.repo] DEBUG - PR 59 will-moore 'Apply settings to Plate' 2025-09-13 00:43:21,760 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/52 HTTP/1.1" 200 None 2025-09-13 00:43:22,199 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/52/comments HTTP/1.1" 200 None 2025-09-13 00:43:22,200 [ scc.repo] DEBUG ## Branches found: 2025-09-13 00:43:22,200 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render 2025-09-13 00:43:22,200 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:43:22,200 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:43:22,203 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-13 00:43:22,206 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-13 00:43:22,206 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-13 00:43:22,210 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-13 00:43:22,213 [ scc.git] DEBUG Already up to date. 2025-09-13 00:43:22,213 [ scc.git] DEBUG Calling 'git fetch origin pull/59/head' 2025-09-13 00:43:22,501 [ scc.git] DEBUG From https://github.com/ome/omero-cli-render 2025-09-13 00:43:22,501 [ scc.git] DEBUG * branch refs/pull/59/head -> FETCH_HEAD 2025-09-13 00:43:22,505 [ scc.git] DEBUG Calling 'git fetch origin pull/69/head' 2025-09-13 00:43:22,783 [ scc.git] DEBUG From https://github.com/ome/omero-cli-render 2025-09-13 00:43:22,784 [ scc.git] DEBUG * branch refs/pull/69/head -> FETCH_HEAD 2025-09-13 00:43:22,788 [ scc.git] DEBUG Calling 'git fetch origin pull/71/head' 2025-09-13 00:43:23,073 [ scc.git] DEBUG From https://github.com/ome/omero-cli-render 2025-09-13 00:43:23,073 [ scc.git] DEBUG * branch refs/pull/71/head -> FETCH_HEAD 2025-09-13 00:43:23,078 [ scc.git] DEBUG Calling 'git fetch origin pull/73/head' 2025-09-13 00:43:23,367 [ scc.git] DEBUG From https://github.com/ome/omero-cli-render 2025-09-13 00:43:23,367 [ scc.git] DEBUG * branch refs/pull/73/head -> FETCH_HEAD 2025-09-13 00:43:23,371 [ scc.git] DEBUG ## Unique users: [] 2025-09-13 00:43:23,371 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:43:23,372 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:43:23,374 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...75fc40970592eca2babd405b65a372f328fb679a' 2025-09-13 00:43:23,378 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:43:23,380 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 59 (Apply settings to Plate) 75fc40970592eca2babd405b65a372f328fb679a' 2025-09-13 00:43:23,389 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-13 00:43:23,393 [ scc.git] DEBUG src/omero_cli_render.py | 159 +++++++++++++++++++++++++++--------------------- 2025-09-13 00:43:23,393 [ scc.git] DEBUG 1 file changed, 89 insertions(+), 70 deletions(-) 2025-09-13 00:43:23,535 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:43:23,536 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...eb65a6621a6b07771ed3410c81ddaa1731004c22' 2025-09-13 00:43:23,540 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:43:23,542 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 69 (Fix help text for impo/export commands) eb65a6621a6b07771ed3410c81ddaa1731004c22' 2025-09-13 00:43:23,552 [ scc.git] DEBUG Auto-merging src/omero_cli_render.py 2025-09-13 00:43:23,553 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-13 00:43:23,557 [ scc.git] DEBUG src/omero_cli_render.py | 14 ++++++-------- 2025-09-13 00:43:23,557 [ scc.git] DEBUG 1 file changed, 6 insertions(+), 8 deletions(-) 2025-09-13 00:43:23,943 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:43:23,944 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...530b6b0ab1346ef837188b2eb3b1a5f679b490b6' 2025-09-13 00:43:23,948 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:43:23,950 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 71 (Escape slash character in image names) 530b6b0ab1346ef837188b2eb3b1a5f679b490b6' 2025-09-13 00:43:23,960 [ scc.git] DEBUG Auto-merging src/omero_cli_render.py 2025-09-13 00:43:23,961 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-13 00:43:23,965 [ scc.git] DEBUG src/omero_cli_render.py | 21 ++++++++++++++------- 2025-09-13 00:43:23,965 [ scc.git] DEBUG 1 file changed, 14 insertions(+), 7 deletions(-) 2025-09-13 00:43:24,345 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:43:24,346 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d230161123b7bbfcb9363e02bbe289367c532cdc' 2025-09-13 00:43:24,350 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:43:24,352 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 73 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) d230161123b7bbfcb9363e02bbe289367c532cdc' 2025-09-13 00:43:24,363 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-13 00:43:24,366 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-09-13 00:43:24,366 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-09-13 00:43:24,742 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:43:24,742 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-13 00:43:24,784 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:43:24,784 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:43:24,786 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-13 00:43:24,827 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-13 00:43:24,831 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb4059e5ad0> has no local changes 2025-09-13 00:43:24,831 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-cli-render Excluded PRs: - PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft) - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft) Already up to date. Merged PRs: - PR 59 will-moore 'Apply settings to Plate' - PR 69 dominikl 'Fix help text for impo/export commands' - PR 71 dominikl 'Escape slash character in image names' - PR 73 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#531 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/531/)' 2025-09-13 00:43:24,837 [ scc.git] DEBUG [detached HEAD bf27184] merge master -Dorg -Ssuccess-only 2025-09-13 00:43:24,838 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:43:24,838 [ scc.repo] DEBUG ## PRs found: 2025-09-13 00:43:25,283 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls HTTP/1.1" 200 None 2025-09-13 00:43:25,773 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/180 HTTP/1.1" 200 None 2025-09-13 00:43:26,218 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/180/comments HTTP/1.1" 200 None 2025-09-13 00:43:26,740 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/c3711975eed107edfb4d710d65420cad05fa322e HTTP/1.1" 200 None 2025-09-13 00:43:27,236 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/c3711975eed107edfb4d710d65420cad05fa322e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:43:27,724 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/c3711975eed107edfb4d710d65420cad05fa322e/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-13 00:43:28,178 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/c3711975eed107edfb4d710d65420cad05fa322e HTTP/1.1" 200 None 2025-09-13 00:43:28,650 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/c3711975eed107edfb4d710d65420cad05fa322e?per_page=1 HTTP/1.1" 200 None 2025-09-13 00:43:29,063 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/c3711975eed107edfb4d710d65420cad05fa322e HTTP/1.1" 200 None 2025-09-13 00:43:29,522 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/c3711975eed107edfb4d710d65420cad05fa322e/status HTTP/1.1" 200 None 2025-09-13 00:43:29,522 [ scc.repo] DEBUG - PR 180 will-moore 'Register command' 2025-09-13 00:43:30,028 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/178 HTTP/1.1" 200 None 2025-09-13 00:43:30,494 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/178/comments HTTP/1.1" 200 None 2025-09-13 00:43:31,055 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bb180dbb97ddc67cd2cf655d56058ba7da765769 HTTP/1.1" 200 None 2025-09-13 00:43:31,565 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bb180dbb97ddc67cd2cf655d56058ba7da765769/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:43:32,101 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bb180dbb97ddc67cd2cf655d56058ba7da765769/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-13 00:43:32,609 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bb180dbb97ddc67cd2cf655d56058ba7da765769 HTTP/1.1" 200 None 2025-09-13 00:43:33,031 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/bb180dbb97ddc67cd2cf655d56058ba7da765769?per_page=1 HTTP/1.1" 200 None 2025-09-13 00:43:33,463 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bb180dbb97ddc67cd2cf655d56058ba7da765769 HTTP/1.1" 200 None 2025-09-13 00:43:33,894 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bb180dbb97ddc67cd2cf655d56058ba7da765769/status HTTP/1.1" 200 None 2025-09-13 00:43:33,895 [ scc.repo] DEBUG - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' 2025-09-13 00:43:34,394 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/174 HTTP/1.1" 200 None 2025-09-13 00:43:34,838 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/174/comments HTTP/1.1" 200 None 2025-09-13 00:43:35,278 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/172 HTTP/1.1" 200 None 2025-09-13 00:43:35,729 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/172/comments HTTP/1.1" 200 None 2025-09-13 00:43:36,278 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/170 HTTP/1.1" 200 None 2025-09-13 00:43:36,722 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/169 HTTP/1.1" 200 None 2025-09-13 00:43:37,228 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/167 HTTP/1.1" 200 None 2025-09-13 00:43:37,791 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/167/comments HTTP/1.1" 200 None 2025-09-13 00:43:38,248 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/166 HTTP/1.1" 200 None 2025-09-13 00:43:38,747 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/162 HTTP/1.1" 200 None 2025-09-13 00:43:39,222 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/123 HTTP/1.1" 200 None 2025-09-13 00:43:39,707 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/123/comments HTTP/1.1" 200 None 2025-09-13 00:43:40,158 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/256245946/issues/123/comments?page=2 HTTP/1.1" 200 None 2025-09-13 00:43:40,159 [ scc.repo] DEBUG ## Branches found: 2025-09-13 00:43:40,159 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr 2025-09-13 00:43:40,159 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:43:40,160 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:43:40,162 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-13 00:43:40,165 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-13 00:43:40,165 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-13 00:43:40,169 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-13 00:43:40,184 [ scc.git] DEBUG Updating 11d3587..f7eea7c 2025-09-13 00:43:40,863 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/179 HTTP/1.1" 200 None 2025-09-13 00:43:41,508 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/177 HTTP/1.1" 200 None 2025-09-13 00:43:42,154 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/175 HTTP/1.1" 200 None 2025-09-13 00:43:42,789 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/147 HTTP/1.1" 200 None 2025-09-13 00:43:43,472 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/173 HTTP/1.1" 200 None 2025-09-13 00:43:44,221 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/171 HTTP/1.1" 200 None 2025-09-13 00:43:44,883 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/168 HTTP/1.1" 200 None 2025-09-13 00:43:44,884 [ scc.git] DEBUG Calling 'git fetch origin pull/178/head' 2025-09-13 00:43:45,172 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr 2025-09-13 00:43:45,172 [ scc.git] DEBUG * branch refs/pull/178/head -> FETCH_HEAD 2025-09-13 00:43:45,177 [ scc.git] DEBUG Calling 'git fetch origin pull/180/head' 2025-09-13 00:43:45,463 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr 2025-09-13 00:43:45,463 [ scc.git] DEBUG * branch refs/pull/180/head -> FETCH_HEAD 2025-09-13 00:43:45,467 [ scc.git] DEBUG ## Unique users: [] 2025-09-13 00:43:45,467 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:43:45,467 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:43:45,470 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...bb180dbb97ddc67cd2cf655d56058ba7da765769' 2025-09-13 00:43:45,473 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:43:45,475 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 178 (Fix export of masks with multi-theC as multi-channel labels) bb180dbb97ddc67cd2cf655d56058ba7da765769' 2025-09-13 00:43:45,486 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-13 00:43:45,490 [ scc.git] DEBUG CHANGELOG.md | 4 ++-- 2025-09-13 00:43:45,490 [ scc.git] DEBUG src/omero_zarr/masks.py | 11 +++++------ 2025-09-13 00:43:45,490 [ scc.git] DEBUG test/integration/clitest/test_export.py | 32 ++++++++++++++++++-------------- 2025-09-13 00:43:45,490 [ scc.git] DEBUG 3 files changed, 25 insertions(+), 22 deletions(-) 2025-09-13 00:43:45,641 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:43:45,642 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c3711975eed107edfb4d710d65420cad05fa322e' 2025-09-13 00:43:45,645 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:43:45,648 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 180 (Register command) c3711975eed107edfb4d710d65420cad05fa322e' 2025-09-13 00:43:45,658 [ scc.git] DEBUG Auto-merging src/omero_zarr/masks.py 2025-09-13 00:43:45,659 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-13 00:43:45,663 [ scc.git] DEBUG .isort.cfg | 2 +- 2025-09-13 00:43:45,663 [ scc.git] DEBUG src/omero_zarr/cli.py | 62 +++ 2025-09-13 00:43:45,663 [ scc.git] DEBUG src/omero_zarr/import_labels.py | 198 +++++++++ 2025-09-13 00:43:45,663 [ scc.git] DEBUG src/omero_zarr/import_xml.py | 146 +++++++ 2025-09-13 00:43:45,663 [ scc.git] DEBUG src/omero_zarr/zarr_import.py | 725 ++++++++++++++++++++++++++++++++ 2025-09-13 00:43:45,663 [ scc.git] DEBUG test/integration/clitest/test_import.py | 185 ++++++++ 2025-09-13 00:43:45,663 [ scc.git] DEBUG 6 files changed, 1317 insertions(+), 1 deletion(-) 2025-09-13 00:43:45,663 [ scc.git] DEBUG create mode 100644 src/omero_zarr/import_labels.py 2025-09-13 00:43:45,663 [ scc.git] DEBUG create mode 100644 src/omero_zarr/import_xml.py 2025-09-13 00:43:45,663 [ scc.git] DEBUG create mode 100644 src/omero_zarr/zarr_import.py 2025-09-13 00:43:45,663 [ scc.git] DEBUG create mode 100644 test/integration/clitest/test_import.py 2025-09-13 00:43:46,040 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:43:46,040 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-13 00:43:46,083 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:43:46,083 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:43:46,086 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-13 00:43:46,127 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-13 00:43:46,131 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb405a05c90> has no local changes 2025-09-13 00:43:46,131 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-cli-zarr Excluded PRs: - PR 174 will-moore 'Skip wells' (stage: draft) - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (exclude comment) - PR 170 will-moore 'Use ome zarr models py' (stage: draft) - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft) - PR 167 dominikl 'Add extinfo command' (stage: draft) - PR 166 will-moore 'Downsample scale option' (stage: draft) - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment) Updating 11d3587..f7eea7c Previously merged: - PR 179 will-moore 'Changelog 0.6.0' - PR 177 jburel 'Replace fromstring by frombuffer' - PR 175 will-moore 'Pin ome-zarr-py <0.12.0' - PR 147 will-moore 'Name option' - PR 173 will-moore 'Add test_export_plate_polygons()' - PR 171 will-moore 'Initial addition of integration tests' - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' - PR 180 will-moore 'Register command' Generated by OMERO-plugins-push#531 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/531/)' 2025-09-13 00:43:46,138 [ scc.git] DEBUG [detached HEAD 796865b] merge master -Dorg -Ssuccess-only 2025-09-13 00:43:46,138 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:43:46,139 [ scc.repo] DEBUG ## PRs found: 2025-09-13 00:43:46,584 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls HTTP/1.1" 200 None 2025-09-13 00:43:47,117 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/642 HTTP/1.1" 200 None 2025-09-13 00:43:47,554 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/642/comments HTTP/1.1" 200 None 2025-09-13 00:43:47,555 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-13 00:43:48,080 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/1fe8ad313b090f3c1e95577a9e7a7248ea605fea HTTP/1.1" 200 None 2025-09-13 00:43:48,635 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/1fe8ad313b090f3c1e95577a9e7a7248ea605fea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:43:49,095 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/1fe8ad313b090f3c1e95577a9e7a7248ea605fea/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-13 00:43:49,642 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/1fe8ad313b090f3c1e95577a9e7a7248ea605fea HTTP/1.1" 200 None 2025-09-13 00:43:50,064 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/1fe8ad313b090f3c1e95577a9e7a7248ea605fea?per_page=1 HTTP/1.1" 200 2 2025-09-13 00:43:50,064 [ scc.repo] DEBUG - PR 642 dependabot[bot] 'Bump vite from 6.2.6 to 6.3.6' 2025-09-13 00:43:50,574 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/641 HTTP/1.1" 200 None 2025-09-13 00:43:51,042 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/641/comments HTTP/1.1" 200 None 2025-09-13 00:43:51,506 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/637 HTTP/1.1" 200 None 2025-09-13 00:43:51,945 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/637/comments HTTP/1.1" 200 None 2025-09-13 00:43:51,946 [ scc.repo] DEBUG # ... Include label: include 2025-09-13 00:43:52,511 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/ac58011fe3386095f2e637d128d293d573474a0c HTTP/1.1" 200 None 2025-09-13 00:43:52,980 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/ac58011fe3386095f2e637d128d293d573474a0c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:43:53,476 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/ac58011fe3386095f2e637d128d293d573474a0c HTTP/1.1" 200 None 2025-09-13 00:43:53,898 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/ac58011fe3386095f2e637d128d293d573474a0c?per_page=1 HTTP/1.1" 200 2 2025-09-13 00:43:53,898 [ scc.repo] DEBUG - PR 637 Rdornier 'Fix scalebar position' 2025-09-13 00:43:54,376 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/630 HTTP/1.1" 200 None 2025-09-13 00:43:54,828 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/630/comments HTTP/1.1" 200 None 2025-09-13 00:43:55,321 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/7a71d8f456b659444095e496a4c6d2449c306a29 HTTP/1.1" 200 None 2025-09-13 00:43:55,766 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/7a71d8f456b659444095e496a4c6d2449c306a29/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:43:56,300 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/7a71d8f456b659444095e496a4c6d2449c306a29/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-13 00:43:56,830 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/7a71d8f456b659444095e496a4c6d2449c306a29 HTTP/1.1" 200 None 2025-09-13 00:43:57,247 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/7a71d8f456b659444095e496a4c6d2449c306a29?per_page=1 HTTP/1.1" 200 2 2025-09-13 00:43:57,247 [ scc.repo] DEBUG - PR 630 will-moore 'Fix color and position for ALL new panel insets' 2025-09-13 00:43:57,754 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/619 HTTP/1.1" 200 None 2025-09-13 00:43:58,242 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/616 HTTP/1.1" 200 None 2025-09-13 00:43:58,694 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/616/comments HTTP/1.1" 200 None 2025-09-13 00:43:58,695 [ scc.repo] DEBUG # ... Include label: include 2025-09-13 00:43:59,185 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/4df87c2fb29b4cb28b030665a560ab13b0ce1fce HTTP/1.1" 200 None 2025-09-13 00:43:59,625 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/4df87c2fb29b4cb28b030665a560ab13b0ce1fce/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:44:00,074 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/4df87c2fb29b4cb28b030665a560ab13b0ce1fce HTTP/1.1" 200 None 2025-09-13 00:44:00,480 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/4df87c2fb29b4cb28b030665a560ab13b0ce1fce?per_page=1 HTTP/1.1" 200 2 2025-09-13 00:44:00,480 [ scc.repo] DEBUG - PR 616 Rdornier 'Fix labels around border' 2025-09-13 00:44:00,956 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/612 HTTP/1.1" 200 None 2025-09-13 00:44:01,385 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/612/comments HTTP/1.1" 200 None 2025-09-13 00:44:01,885 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/9ae98a37ea474db7d473b99abb884cd4b1fdfb36 HTTP/1.1" 200 None 2025-09-13 00:44:02,379 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/9ae98a37ea474db7d473b99abb884cd4b1fdfb36/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:44:02,899 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/9ae98a37ea474db7d473b99abb884cd4b1fdfb36/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-13 00:44:03,416 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/9ae98a37ea474db7d473b99abb884cd4b1fdfb36 HTTP/1.1" 200 None 2025-09-13 00:44:03,842 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/9ae98a37ea474db7d473b99abb884cd4b1fdfb36?per_page=1 HTTP/1.1" 200 2 2025-09-13 00:44:03,842 [ scc.repo] DEBUG - PR 612 will-moore 'Script version' 2025-09-13 00:44:04,299 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/610 HTTP/1.1" 200 None 2025-09-13 00:44:04,736 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/610/comments HTTP/1.1" 200 None 2025-09-13 00:44:05,324 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/59ca9bf79effaded86845d8c49fb94bda6727333 HTTP/1.1" 200 None 2025-09-13 00:44:05,805 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/59ca9bf79effaded86845d8c49fb94bda6727333/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:44:06,338 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/59ca9bf79effaded86845d8c49fb94bda6727333/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-13 00:44:06,850 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/59ca9bf79effaded86845d8c49fb94bda6727333 HTTP/1.1" 200 None 2025-09-13 00:44:07,274 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/59ca9bf79effaded86845d8c49fb94bda6727333?per_page=1 HTTP/1.1" 200 2 2025-09-13 00:44:07,274 [ scc.repo] DEBUG - PR 610 will-moore 'Add docs/contributing.rst' 2025-09-13 00:44:07,764 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/600 HTTP/1.1" 200 None 2025-09-13 00:44:08,250 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/600/comments HTTP/1.1" 200 None 2025-09-13 00:44:08,252 [ scc.repo] DEBUG # ... Include label: include 2025-09-13 00:44:08,822 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/e6b77832b4c3dcec62c662935e9d79cd0619f780 HTTP/1.1" 200 None 2025-09-13 00:44:09,280 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/e6b77832b4c3dcec62c662935e9d79cd0619f780/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:44:09,824 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/e6b77832b4c3dcec62c662935e9d79cd0619f780 HTTP/1.1" 200 None 2025-09-13 00:44:10,228 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/e6b77832b4c3dcec62c662935e9d79cd0619f780?per_page=1 HTTP/1.1" 200 2 2025-09-13 00:44:10,229 [ scc.repo] DEBUG - PR 600 Rdornier 'Label on rois' 2025-09-13 00:44:10,229 [ scc.repo] DEBUG ## Branches found: 2025-09-13 00:44:10,229 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure 2025-09-13 00:44:10,230 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:44:10,230 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:44:10,233 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-13 00:44:10,236 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-13 00:44:10,236 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-13 00:44:10,240 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-13 00:44:10,263 [ scc.git] DEBUG Updating 9cc36cde..66607c99 2025-09-13 00:44:10,914 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/605 HTTP/1.1" 200 None 2025-09-13 00:44:11,644 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/638 HTTP/1.1" 200 None 2025-09-13 00:44:12,274 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/633 HTTP/1.1" 200 None 2025-09-13 00:44:12,942 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/635 HTTP/1.1" 200 None 2025-09-13 00:44:13,611 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/623 HTTP/1.1" 200 None 2025-09-13 00:44:14,278 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/631 HTTP/1.1" 200 None 2025-09-13 00:44:14,279 [ scc.git] DEBUG Calling 'git fetch origin pull/600/head' 2025-09-13 00:44:14,885 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2025-09-13 00:44:14,885 [ scc.git] DEBUG * branch refs/pull/600/head -> FETCH_HEAD 2025-09-13 00:44:14,889 [ scc.git] DEBUG Calling 'git fetch origin pull/610/head' 2025-09-13 00:44:15,174 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2025-09-13 00:44:15,174 [ scc.git] DEBUG * branch refs/pull/610/head -> FETCH_HEAD 2025-09-13 00:44:15,179 [ scc.git] DEBUG Calling 'git fetch origin pull/612/head' 2025-09-13 00:44:15,467 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2025-09-13 00:44:15,467 [ scc.git] DEBUG * branch refs/pull/612/head -> FETCH_HEAD 2025-09-13 00:44:15,471 [ scc.git] DEBUG Calling 'git fetch origin pull/616/head' 2025-09-13 00:44:16,168 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2025-09-13 00:44:16,168 [ scc.git] DEBUG * branch refs/pull/616/head -> FETCH_HEAD 2025-09-13 00:44:16,171 [ scc.git] DEBUG Calling 'git fetch origin pull/630/head' 2025-09-13 00:44:16,466 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2025-09-13 00:44:16,466 [ scc.git] DEBUG * branch refs/pull/630/head -> FETCH_HEAD 2025-09-13 00:44:16,471 [ scc.git] DEBUG Calling 'git fetch origin pull/637/head' 2025-09-13 00:44:17,462 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2025-09-13 00:44:17,462 [ scc.git] DEBUG * branch refs/pull/637/head -> FETCH_HEAD 2025-09-13 00:44:17,465 [ scc.git] DEBUG Calling 'git fetch origin pull/642/head' 2025-09-13 00:44:17,742 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2025-09-13 00:44:17,742 [ scc.git] DEBUG * branch refs/pull/642/head -> FETCH_HEAD 2025-09-13 00:44:17,747 [ scc.git] DEBUG ## Unique users: [] 2025-09-13 00:44:17,747 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:44:17,747 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:44:17,750 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...e6b77832b4c3dcec62c662935e9d79cd0619f780' 2025-09-13 00:44:17,757 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:44:17,760 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 600 (Label on rois) e6b77832b4c3dcec62c662935e9d79cd0619f780' 2025-09-13 00:44:17,780 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-13 00:44:17,791 [ scc.git] DEBUG .gitignore | 2 + 2025-09-13 00:44:17,791 [ scc.git] DEBUG .../scripts/omero/figure_scripts/Figure_To_Pdf.py | 274 +++++++- 2025-09-13 00:44:17,791 [ scc.git] DEBUG src/css/figure.css | 18 +- 2025-09-13 00:44:17,791 [ scc.git] DEBUG src/images/text-icon-24.png | Bin 0 -> 2477 bytes 2025-09-13 00:44:17,791 [ scc.git] DEBUG src/index.html | 34 +- 2025-09-13 00:44:17,791 [ scc.git] DEBUG src/js/models/panel_model.js | 69 +- 2025-09-13 00:44:17,791 [ scc.git] DEBUG src/js/shapeEditorTest.js | 29 +- 2025-09-13 00:44:17,791 [ scc.git] DEBUG src/js/shape_editor/ellipse.js | 208 +++++- 2025-09-13 00:44:17,791 [ scc.git] DEBUG src/js/shape_editor/line.js | 215 +++++- 2025-09-13 00:44:17,791 [ scc.git] DEBUG src/js/shape_editor/point.js | 203 +++++- 2025-09-13 00:44:17,791 [ scc.git] DEBUG src/js/shape_editor/polygon.js | 207 +++++- 2025-09-13 00:44:17,791 [ scc.git] DEBUG src/js/shape_editor/rect.js | 212 +++++- 2025-09-13 00:44:17,791 [ scc.git] DEBUG src/js/shape_editor/shape_manager.js | 411 ++++++++++- 2025-09-13 00:44:17,791 [ scc.git] DEBUG src/js/shape_editor/text.js | 754 +++++++++++++++++++++ 2025-09-13 00:44:17,791 [ scc.git] DEBUG src/js/views/panel_view.js | 2 +- 2025-09-13 00:44:17,792 [ scc.git] DEBUG src/js/views/right_panel_view.js | 121 +++- 2025-09-13 00:44:17,792 [ scc.git] DEBUG src/js/views/roi_loader_view.js | 57 +- 2025-09-13 00:44:17,792 [ scc.git] DEBUG src/js/views/roi_modal_view.js | 182 ++++- 2025-09-13 00:44:17,792 [ scc.git] DEBUG src/shapeEditorTest.html | 37 +- 2025-09-13 00:44:17,792 [ scc.git] DEBUG src/templates/scalebar_form.template.html | 4 +- 2025-09-13 00:44:17,792 [ scc.git] DEBUG src/templates/shapes/shape_sidebar.template.html | 51 ++ 2025-09-13 00:44:17,792 [ scc.git] DEBUG src/templates/shapes/shape_toolbar.template.html | 382 +++++++---- 2025-09-13 00:44:17,792 [ scc.git] DEBUG 22 files changed, 3248 insertions(+), 224 deletions(-) 2025-09-13 00:44:17,792 [ scc.git] DEBUG create mode 100644 src/images/text-icon-24.png 2025-09-13 00:44:17,793 [ scc.git] DEBUG create mode 100644 src/js/shape_editor/text.js 2025-09-13 00:44:17,793 [ scc.git] DEBUG create mode 100644 src/templates/shapes/shape_sidebar.template.html 2025-09-13 00:44:17,931 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:44:17,932 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...59ca9bf79effaded86845d8c49fb94bda6727333' 2025-09-13 00:44:17,939 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:44:17,942 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 610 (Add docs/contributing.rst) 59ca9bf79effaded86845d8c49fb94bda6727333' 2025-09-13 00:44:17,963 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-13 00:44:17,967 [ scc.git] DEBUG .github/PULL_REQUEST_TEMPLATE.md | 5 +++ 2025-09-13 00:44:17,967 [ scc.git] DEBUG README.rst | 4 +- 2025-09-13 00:44:17,967 [ scc.git] DEBUG docs/contributing.md | 89 ++++++++++++++++++++++++++++++++++++++++ 2025-09-13 00:44:17,967 [ scc.git] DEBUG 3 files changed, 97 insertions(+), 1 deletion(-) 2025-09-13 00:44:17,967 [ scc.git] DEBUG create mode 100644 .github/PULL_REQUEST_TEMPLATE.md 2025-09-13 00:44:17,967 [ scc.git] DEBUG create mode 100644 docs/contributing.md 2025-09-13 00:44:18,321 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:44:18,322 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...9ae98a37ea474db7d473b99abb884cd4b1fdfb36' 2025-09-13 00:44:18,330 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:44:18,332 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 612 (Script version) 9ae98a37ea474db7d473b99abb884cd4b1fdfb36' 2025-09-13 00:44:18,362 [ scc.git] DEBUG Auto-merging omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 2025-09-13 00:44:18,362 [ scc.git] DEBUG Auto-merging package-lock.json 2025-09-13 00:44:18,362 [ scc.git] DEBUG Auto-merging package.json 2025-09-13 00:44:18,362 [ scc.git] DEBUG Auto-merging src/css/figure.css 2025-09-13 00:44:18,362 [ scc.git] DEBUG Auto-merging src/index.html 2025-09-13 00:44:18,363 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-13 00:44:18,371 [ scc.git] DEBUG .bumpversion.cfg | 2 + 2025-09-13 00:44:18,371 [ scc.git] DEBUG .../scripts/omero/figure_scripts/Figure_To_Pdf.py | 7 +- 2025-09-13 00:44:18,371 [ scc.git] DEBUG omero_figure/urls.py | 3 + 2025-09-13 00:44:18,371 [ scc.git] DEBUG omero_figure/views.py | 54 ++++++++++++++ 2025-09-13 00:44:18,371 [ scc.git] DEBUG package-lock.json | 8 +- 2025-09-13 00:44:18,371 [ scc.git] DEBUG package.json | 3 +- 2025-09-13 00:44:18,371 [ scc.git] DEBUG src/css/figure.css | 2 +- 2025-09-13 00:44:18,371 [ scc.git] DEBUG src/html/dialogs/scriptManagerDialog.html | 86 ++++++++++++++++++++++ 2025-09-13 00:44:18,371 [ scc.git] DEBUG src/index.html | 20 +++-- 2025-09-13 00:44:18,371 [ scc.git] DEBUG src/js/views/figure_view.js | 54 ++++++++++++++ 2025-09-13 00:44:18,371 [ scc.git] DEBUG vite.config.js | 3 + 2025-09-13 00:44:18,371 [ scc.git] DEBUG 11 files changed, 230 insertions(+), 12 deletions(-) 2025-09-13 00:44:18,371 [ scc.git] DEBUG create mode 100644 src/html/dialogs/scriptManagerDialog.html 2025-09-13 00:44:18,716 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:44:18,716 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...4df87c2fb29b4cb28b030665a560ab13b0ce1fce' 2025-09-13 00:44:18,725 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:44:18,727 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 616 (Fix labels around border) 4df87c2fb29b4cb28b030665a560ab13b0ce1fce' 2025-09-13 00:44:18,757 [ scc.git] DEBUG Auto-merging omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 2025-09-13 00:44:18,757 [ scc.git] DEBUG Auto-merging src/js/models/panel_model.js 2025-09-13 00:44:18,757 [ scc.git] DEBUG Auto-merging src/js/views/figure_view.js 2025-09-13 00:44:18,757 [ scc.git] DEBUG Auto-merging src/js/views/panel_view.js 2025-09-13 00:44:18,758 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-13 00:44:18,765 [ scc.git] DEBUG .../scripts/omero/figure_scripts/Figure_To_Pdf.py | 22 ++++++++++++++-------- 2025-09-13 00:44:18,765 [ scc.git] DEBUG src/js/models/panel_model.js | 16 ++++++++++++++++ 2025-09-13 00:44:18,765 [ scc.git] DEBUG src/js/views/figure_view.js | 4 +++- 2025-09-13 00:44:18,765 [ scc.git] DEBUG src/js/views/panel_view.js | 21 +++++++++------------ 2025-09-13 00:44:18,765 [ scc.git] DEBUG 4 files changed, 42 insertions(+), 21 deletions(-) 2025-09-13 00:44:19,108 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:44:19,109 [ scc.git] DEBUG Resolving previous conflict on Pull Request #616. 2025-09-13 00:44:19,508 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:44:20,471 [urllib3.conn] DEBUG https://api.github.com:443 "PATCH /repos/ome/omero-figure/issues/comments/3143651011 HTTP/1.1" 200 None 2025-09-13 00:44:20,472 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...7a71d8f456b659444095e496a4c6d2449c306a29' 2025-09-13 00:44:20,481 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:44:20,483 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 630 (Fix color and position for ALL new panel insets) 7a71d8f456b659444095e496a4c6d2449c306a29' 2025-09-13 00:44:20,503 [ scc.git] DEBUG Auto-merging src/js/views/right_panel_view.js 2025-09-13 00:44:20,504 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/js/views/right_panel_view.js 2025-09-13 00:44:20,504 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-09-13 00:44:20,505 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-09-13 00:44:20,508 [ scc.git] DEBUG Calling 'git reset --hard 3061bff74acedf376e35f1bafb155ed5a81cdd9d' 2025-09-13 00:44:20,514 [ scc.git] DEBUG HEAD is now at 3061bff7 merge master -Dorg -Ssuccess-only: PR 616 (Fix labels around border) 2025-09-13 00:44:20,866 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:44:20,867 [ scc.git] DEBUG Calling 'git merge-base 66607c99ef10bf7997fe30f3813c6f90c401783a 7a71d8f456b659444095e496a4c6d2449c306a29' 2025-09-13 00:44:20,873 [ scc.git] DEBUG Calling 'git diff --name-only 9cc36cde05bde4def7b62b07c2e9ae5f66712e96..66607c99ef10bf7997fe30f3813c6f90c401783a' 2025-09-13 00:44:20,877 [ scc.git] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets' Conflicting PR. Removed from build [OMERO-plugins-push#531](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/531/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/531/consoleText) for more details. Possible conflicts: - PR #600 Rdornier 'Label on rois' - src/js/views/right_panel_view.js - Upstream changes - src/js/views/right_panel_view.js --conflicts 2025-09-13 00:44:20,879 [ scc.config] DEBUG Found github.token 2025-09-13 00:44:20,879 [ scc.git] DEBUG Not adding comment to issue #630, already --conflicts. 2025-09-13 00:44:20,879 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...ac58011fe3386095f2e637d128d293d573474a0c' 2025-09-13 00:44:20,888 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:44:20,890 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 637 (Fix scalebar position) ac58011fe3386095f2e637d128d293d573474a0c' 2025-09-13 00:44:20,919 [ scc.git] DEBUG Auto-merging omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 2025-09-13 00:44:20,919 [ scc.git] DEBUG Auto-merging src/css/figure.css 2025-09-13 00:44:20,919 [ scc.git] DEBUG Auto-merging src/js/views/panel_view.js 2025-09-13 00:44:20,919 [ scc.git] DEBUG Auto-merging src/templates/scalebar_form.template.html 2025-09-13 00:44:20,919 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/templates/scalebar_form.template.html 2025-09-13 00:44:20,919 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-09-13 00:44:20,920 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-09-13 00:44:20,925 [ scc.git] DEBUG Calling 'git reset --hard 3061bff74acedf376e35f1bafb155ed5a81cdd9d' 2025-09-13 00:44:20,934 [ scc.git] DEBUG HEAD is now at 3061bff7 merge master -Dorg -Ssuccess-only: PR 616 (Fix labels around border) 2025-09-13 00:44:21,266 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:44:21,267 [ scc.git] DEBUG Calling 'git merge-base 66607c99ef10bf7997fe30f3813c6f90c401783a ac58011fe3386095f2e637d128d293d573474a0c' 2025-09-13 00:44:21,271 [ scc.git] DEBUG Calling 'git diff --name-only 66607c99ef10bf7997fe30f3813c6f90c401783a..66607c99ef10bf7997fe30f3813c6f90c401783a' 2025-09-13 00:44:21,274 [ scc.git] INFO - PR 637 Rdornier 'Fix scalebar position' Conflicting PR. Removed from build [OMERO-plugins-push#531](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/531/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/531/consoleText) for more details. Possible conflicts: - PR #600 Rdornier 'Label on rois' - src/templates/scalebar_form.template.html --conflicts 2025-09-13 00:44:21,277 [ scc.config] DEBUG Found github.token 2025-09-13 00:44:21,277 [ scc.git] DEBUG Adding comment to issue #637. 2025-09-13 00:44:22,081 [urllib3.conn] DEBUG https://api.github.com:443 "POST /repos/ome/omero-figure/issues/637/comments HTTP/1.1" 201 2022 2025-09-13 00:44:22,082 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1fe8ad313b090f3c1e95577a9e7a7248ea605fea' 2025-09-13 00:44:22,091 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:44:22,093 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 642 (Bump vite from 6.2.6 to 6.3.6) 1fe8ad313b090f3c1e95577a9e7a7248ea605fea' 2025-09-13 00:44:22,111 [ scc.git] DEBUG Auto-merging package-lock.json 2025-09-13 00:44:22,111 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2025-09-13 00:44:22,111 [ scc.git] DEBUG Auto-merging package.json 2025-09-13 00:44:22,111 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-09-13 00:44:22,112 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-09-13 00:44:22,115 [ scc.git] DEBUG Calling 'git reset --hard 3061bff74acedf376e35f1bafb155ed5a81cdd9d' 2025-09-13 00:44:22,121 [ scc.git] DEBUG HEAD is now at 3061bff7 merge master -Dorg -Ssuccess-only: PR 616 (Fix labels around border) 2025-09-13 00:44:22,481 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:44:22,481 [ scc.git] DEBUG Calling 'git merge-base 66607c99ef10bf7997fe30f3813c6f90c401783a 1fe8ad313b090f3c1e95577a9e7a7248ea605fea' 2025-09-13 00:44:22,487 [ scc.git] DEBUG Calling 'git diff --name-only d2c6f5bc061df1e02422728732b07ae7a929ccb2..66607c99ef10bf7997fe30f3813c6f90c401783a' 2025-09-13 00:44:22,491 [ scc.git] INFO - PR 642 dependabot[bot] 'Bump vite from 6.2.6 to 6.3.6' Conflicting PR. Removed from build [OMERO-plugins-push#531](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/531/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/531/consoleText) for more details. Possible conflicts: - PR #612 will-moore 'Script version' - package-lock.json --conflicts 2025-09-13 00:44:22,493 [ scc.config] DEBUG Found github.token 2025-09-13 00:44:22,493 [ scc.git] DEBUG Not adding comment to issue #642, already --conflicts. 2025-09-13 00:44:22,493 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-13 00:44:22,536 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:44:22,536 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:44:22,539 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-13 00:44:22,580 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-13 00:44:22,585 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb405957490> has no local changes 2025-09-13 00:44:22,586 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-figure Excluded PRs: - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier) - PR 619 will-moore 'OME-Zarr support' (stage: draft) - PR 543 will-moore 'Plate well labels' (exclude comment) Updating 9cc36cde..66607c99 Previously merged: - PR 605 Tom-TBT 'Colorbar feature' - PR 638 Rdornier 'Fix arrow opacity' - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4' - PR 635 dependabot[bot] 'Bump esbuild and vite' - PR 623 will-moore 'Fix wrapping of label X button. see issues/622' - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 600 Rdornier 'Label on rois' - PR 610 will-moore 'Add docs/contributing.rst' - PR 612 will-moore 'Script version' - PR 616 Rdornier 'Fix labels around border' Conflicting PRs (not included): - PR 630 will-moore 'Fix color and position for ALL new panel insets' - PR 637 Rdornier 'Fix scalebar position' - PR 642 dependabot[bot] 'Bump vite from 6.2.6 to 6.3.6' Generated by OMERO-plugins-push#531 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/531/)' 2025-09-13 00:44:22,595 [ scc.git] DEBUG [detached HEAD 87d2e537] merge master -Dorg -Ssuccess-only 2025-09-13 00:44:22,595 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:44:22,595 [ scc.repo] DEBUG ## PRs found: 2025-09-13 00:44:23,031 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/pulls HTTP/1.1" 200 None 2025-09-13 00:44:23,505 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/31 HTTP/1.1" 200 None 2025-09-13 00:44:23,505 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-13 00:44:24,120 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c HTTP/1.1" 200 None 2025-09-13 00:44:24,629 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:44:25,135 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-13 00:44:25,573 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c HTTP/1.1" 200 None 2025-09-13 00:44:25,993 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/statuses/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c?per_page=1 HTTP/1.1" 200 2 2025-09-13 00:44:25,993 [ scc.repo] DEBUG - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-13 00:44:26,469 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/18 HTTP/1.1" 200 None 2025-09-13 00:44:26,948 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/18/comments HTTP/1.1" 200 None 2025-09-13 00:44:27,498 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337 HTTP/1.1" 200 None 2025-09-13 00:44:27,964 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:44:28,502 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337 HTTP/1.1" 200 None 2025-09-13 00:44:28,920 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/statuses/45aed4d15501fa5a524a8b500af8d426f0f6b337?per_page=1 HTTP/1.1" 200 2 2025-09-13 00:44:28,921 [ scc.repo] DEBUG - PR 18 jburel 'default size z value' 2025-09-13 00:44:28,921 [ scc.repo] DEBUG ## Branches found: 2025-09-13 00:44:28,921 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage 2025-09-13 00:44:28,921 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:44:28,921 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:44:28,924 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-13 00:44:28,926 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-13 00:44:28,926 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-13 00:44:28,930 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-13 00:44:28,934 [ scc.git] DEBUG Already up to date. 2025-09-13 00:44:28,934 [ scc.git] DEBUG Calling 'git fetch origin pull/18/head' 2025-09-13 00:44:29,221 [ scc.git] DEBUG From https://github.com/ome/omero-fpbioimage 2025-09-13 00:44:29,222 [ scc.git] DEBUG * branch refs/pull/18/head -> FETCH_HEAD 2025-09-13 00:44:29,226 [ scc.git] DEBUG Calling 'git fetch origin pull/31/head' 2025-09-13 00:44:29,508 [ scc.git] DEBUG From https://github.com/ome/omero-fpbioimage 2025-09-13 00:44:29,508 [ scc.git] DEBUG * branch refs/pull/31/head -> FETCH_HEAD 2025-09-13 00:44:29,512 [ scc.git] DEBUG ## Unique users: [] 2025-09-13 00:44:29,512 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:44:29,512 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:44:29,514 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45aed4d15501fa5a524a8b500af8d426f0f6b337' 2025-09-13 00:44:29,518 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:44:29,520 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 18 (default size z value) 45aed4d15501fa5a524a8b500af8d426f0f6b337' 2025-09-13 00:44:29,527 [ scc.git] DEBUG Auto-merging omero_fpbioimage/views.py 2025-09-13 00:44:29,528 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-13 00:44:29,532 [ scc.git] DEBUG omero_fpbioimage/views.py | 2 ++ 2025-09-13 00:44:29,532 [ scc.git] DEBUG 1 file changed, 2 insertions(+) 2025-09-13 00:44:29,672 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:44:29,673 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c' 2025-09-13 00:44:29,677 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:44:29,679 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 31 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c' 2025-09-13 00:44:29,688 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-13 00:44:29,691 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-09-13 00:44:29,691 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-09-13 00:44:30,071 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:44:30,072 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-13 00:44:30,115 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:44:30,115 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:44:30,117 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-13 00:44:30,158 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-13 00:44:30,162 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb40598f690> has no local changes 2025-09-13 00:44:30,162 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-fpbioimage Already up to date. Merged PRs: - PR 18 jburel 'default size z value' - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#531 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/531/)' 2025-09-13 00:44:30,168 [ scc.git] DEBUG [detached HEAD 9742198] merge master -Dorg -Ssuccess-only 2025-09-13 00:44:30,168 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:44:30,169 [ scc.repo] DEBUG ## PRs found: 2025-09-13 00:44:30,580 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/pulls HTTP/1.1" 200 None 2025-09-13 00:44:31,078 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/119 HTTP/1.1" 200 None 2025-09-13 00:44:31,577 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/119/comments HTTP/1.1" 200 None 2025-09-13 00:44:32,077 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/9042541/issues/119/comments?page=2 HTTP/1.1" 200 None 2025-09-13 00:44:32,078 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-13 00:44:32,681 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062 HTTP/1.1" 200 None 2025-09-13 00:44:33,160 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:44:33,679 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-13 00:44:34,219 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062 HTTP/1.1" 200 None 2025-09-13 00:44:34,624 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/00257fc993a12b3f78a45db039e7bf2c8a406062?per_page=1 HTTP/1.1" 200 2 2025-09-13 00:44:34,624 [ scc.repo] DEBUG - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' 2025-09-13 00:44:35,128 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/118 HTTP/1.1" 200 None 2025-09-13 00:44:35,633 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/118/comments HTTP/1.1" 200 None 2025-09-13 00:44:36,084 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/9042541/issues/118/comments?page=2 HTTP/1.1" 200 None 2025-09-13 00:44:36,085 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-13 00:44:36,685 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d HTTP/1.1" 200 None 2025-09-13 00:44:37,144 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:44:37,623 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-13 00:44:38,226 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d HTTP/1.1" 200 None 2025-09-13 00:44:38,673 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/2bf34ddacb511c52e473a104fe2a1c00204bae1d?per_page=1 HTTP/1.1" 200 2 2025-09-13 00:44:38,674 [ scc.repo] DEBUG - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' 2025-09-13 00:44:39,149 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/117 HTTP/1.1" 200 None 2025-09-13 00:44:39,149 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-13 00:44:39,719 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c HTTP/1.1" 200 None 2025-09-13 00:44:40,212 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:44:40,718 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-13 00:44:41,260 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c HTTP/1.1" 200 None 2025-09-13 00:44:41,666 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/155d7ddab4f04c4a91bffc5736ba0741003c566c?per_page=1 HTTP/1.1" 200 2 2025-09-13 00:44:41,667 [ scc.repo] DEBUG - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' 2025-09-13 00:44:42,165 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/116 HTTP/1.1" 200 None 2025-09-13 00:44:42,165 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-13 00:44:42,726 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d HTTP/1.1" 200 None 2025-09-13 00:44:43,225 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:44:43,724 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-13 00:44:44,174 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d HTTP/1.1" 200 None 2025-09-13 00:44:44,591 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d?per_page=1 HTTP/1.1" 200 2 2025-09-13 00:44:44,591 [ scc.repo] DEBUG - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' 2025-09-13 00:44:45,054 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/115 HTTP/1.1" 200 None 2025-09-13 00:44:45,486 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/115/comments HTTP/1.1" 200 None 2025-09-13 00:44:45,487 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-13 00:44:46,080 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5 HTTP/1.1" 200 None 2025-09-13 00:44:46,563 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:44:47,049 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-13 00:44:47,599 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5 HTTP/1.1" 200 None 2025-09-13 00:44:48,013 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/25020d66a7df4ec3cad5967706bb7d13b1493bb5?per_page=1 HTTP/1.1" 200 2 2025-09-13 00:44:48,013 [ scc.repo] DEBUG - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' 2025-09-13 00:44:48,476 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/114 HTTP/1.1" 200 None 2025-09-13 00:44:48,477 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-13 00:44:49,044 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b HTTP/1.1" 200 None 2025-09-13 00:44:49,561 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:44:50,063 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-13 00:44:50,628 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b HTTP/1.1" 200 None 2025-09-13 00:44:51,054 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/cf75d259b2882000d6be73bc1c11c99c27aa439b?per_page=1 HTTP/1.1" 200 2 2025-09-13 00:44:51,054 [ scc.repo] DEBUG - PR 114 dependabot[bot] 'Bump tar and fsevents' 2025-09-13 00:44:51,542 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/113 HTTP/1.1" 200 None 2025-09-13 00:44:51,543 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-13 00:44:52,203 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e HTTP/1.1" 200 None 2025-09-13 00:44:52,710 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:44:53,231 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-13 00:44:53,752 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e HTTP/1.1" 200 None 2025-09-13 00:44:54,188 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/6a657d7a4e0bbfaa3464e851023f29c63db15d4e?per_page=1 HTTP/1.1" 200 2 2025-09-13 00:44:54,189 [ scc.repo] DEBUG - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' 2025-09-13 00:44:54,189 [ scc.repo] DEBUG ## Branches found: 2025-09-13 00:44:54,189 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery 2025-09-13 00:44:54,189 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:44:54,189 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:44:54,192 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-13 00:44:54,195 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-13 00:44:54,195 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-13 00:44:54,198 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-13 00:44:54,201 [ scc.git] DEBUG Already up to date. 2025-09-13 00:44:54,201 [ scc.git] DEBUG Calling 'git fetch origin pull/113/head' 2025-09-13 00:44:54,500 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2025-09-13 00:44:54,500 [ scc.git] DEBUG * branch refs/pull/113/head -> FETCH_HEAD 2025-09-13 00:44:54,505 [ scc.git] DEBUG Calling 'git fetch origin pull/114/head' 2025-09-13 00:44:54,786 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2025-09-13 00:44:54,786 [ scc.git] DEBUG * branch refs/pull/114/head -> FETCH_HEAD 2025-09-13 00:44:54,791 [ scc.git] DEBUG Calling 'git fetch origin pull/115/head' 2025-09-13 00:44:55,062 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2025-09-13 00:44:55,062 [ scc.git] DEBUG * branch refs/pull/115/head -> FETCH_HEAD 2025-09-13 00:44:55,066 [ scc.git] DEBUG Calling 'git fetch origin pull/116/head' 2025-09-13 00:44:55,355 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2025-09-13 00:44:55,355 [ scc.git] DEBUG * branch refs/pull/116/head -> FETCH_HEAD 2025-09-13 00:44:55,360 [ scc.git] DEBUG Calling 'git fetch origin pull/117/head' 2025-09-13 00:44:55,638 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2025-09-13 00:44:55,638 [ scc.git] DEBUG * branch refs/pull/117/head -> FETCH_HEAD 2025-09-13 00:44:55,643 [ scc.git] DEBUG Calling 'git fetch origin pull/118/head' 2025-09-13 00:44:55,920 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2025-09-13 00:44:55,920 [ scc.git] DEBUG * branch refs/pull/118/head -> FETCH_HEAD 2025-09-13 00:44:55,924 [ scc.git] DEBUG Calling 'git fetch origin pull/119/head' 2025-09-13 00:44:56,202 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2025-09-13 00:44:56,202 [ scc.git] DEBUG * branch refs/pull/119/head -> FETCH_HEAD 2025-09-13 00:44:56,207 [ scc.git] DEBUG ## Unique users: [] 2025-09-13 00:44:56,207 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:44:56,207 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:44:56,209 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6a657d7a4e0bbfaa3464e851023f29c63db15d4e' 2025-09-13 00:44:56,212 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:44:56,214 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 113 (Bump elliptic from 6.5.4 to 6.6.1) 6a657d7a4e0bbfaa3464e851023f29c63db15d4e' 2025-09-13 00:44:56,224 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-13 00:44:56,229 [ scc.git] DEBUG package-lock.json | 12 ++++++------ 2025-09-13 00:44:56,229 [ scc.git] DEBUG 1 file changed, 6 insertions(+), 6 deletions(-) 2025-09-13 00:44:56,377 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:44:56,377 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...cf75d259b2882000d6be73bc1c11c99c27aa439b' 2025-09-13 00:44:56,381 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:44:56,383 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 114 (Bump tar and fsevents) cf75d259b2882000d6be73bc1c11c99c27aa439b' 2025-09-13 00:44:56,400 [ scc.git] DEBUG Auto-merging package-lock.json 2025-09-13 00:44:56,401 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-13 00:44:56,407 [ scc.git] DEBUG package-lock.json | 625 +++--------------------------------------------------- 2025-09-13 00:44:56,407 [ scc.git] DEBUG 1 file changed, 29 insertions(+), 596 deletions(-) 2025-09-13 00:44:56,783 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:44:56,784 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25020d66a7df4ec3cad5967706bb7d13b1493bb5' 2025-09-13 00:44:56,787 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:44:56,790 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 115 (Bump micromatch, webpack-cli and webpack) 25020d66a7df4ec3cad5967706bb7d13b1493bb5' 2025-09-13 00:44:56,807 [ scc.git] DEBUG Auto-merging package-lock.json 2025-09-13 00:44:56,807 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2025-09-13 00:44:56,807 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-09-13 00:44:56,807 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-09-13 00:44:56,810 [ scc.git] DEBUG Calling 'git reset --hard 8e2a49f874886907d235958471695c73c106d6e5' 2025-09-13 00:44:56,815 [ scc.git] DEBUG HEAD is now at 8e2a49f merge master -Dorg -Ssuccess-only: PR 114 (Bump tar and fsevents) 2025-09-13 00:44:57,298 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:44:57,298 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 25020d66a7df4ec3cad5967706bb7d13b1493bb5' 2025-09-13 00:44:57,301 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd' 2025-09-13 00:44:57,304 [ scc.git] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' Conflicting PR. Removed from build [OMERO-plugins-push#531](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/531/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/531/consoleText) for more details. Possible conflicts: - PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - package-lock.json - PR #114 dependabot[bot] 'Bump tar and fsevents' - package-lock.json --conflicts 2025-09-13 00:44:57,306 [ scc.config] DEBUG Found github.token 2025-09-13 00:44:57,306 [ scc.git] DEBUG Not adding comment to issue #115, already --conflicts. 2025-09-13 00:44:57,306 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d' 2025-09-13 00:44:57,309 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:44:57,312 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 116 (Bump browserify-sign from 4.0.4 to 4.2.3) 42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d' 2025-09-13 00:44:57,329 [ scc.git] DEBUG Auto-merging package-lock.json 2025-09-13 00:44:57,330 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-13 00:44:57,335 [ scc.git] DEBUG package-lock.json | 119 +++++++++++++++++++++++++++++++++++++++++++++++++----- 2025-09-13 00:44:57,335 [ scc.git] DEBUG 1 file changed, 108 insertions(+), 11 deletions(-) 2025-09-13 00:44:57,699 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:44:57,699 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...155d7ddab4f04c4a91bffc5736ba0741003c566c' 2025-09-13 00:44:57,702 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:44:57,705 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6) 155d7ddab4f04c4a91bffc5736ba0741003c566c' 2025-09-13 00:44:57,723 [ scc.git] DEBUG Auto-merging package-lock.json 2025-09-13 00:44:57,724 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-13 00:44:57,729 [ scc.git] DEBUG package-lock.json | 6 +++--- 2025-09-13 00:44:57,729 [ scc.git] DEBUG 1 file changed, 3 insertions(+), 3 deletions(-) 2025-09-13 00:44:58,087 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:44:58,087 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2bf34ddacb511c52e473a104fe2a1c00204bae1d' 2025-09-13 00:44:58,091 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:44:58,093 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 118 (Bump braces, webpack-cli and webpack) 2bf34ddacb511c52e473a104fe2a1c00204bae1d' 2025-09-13 00:44:58,110 [ scc.git] DEBUG Auto-merging package-lock.json 2025-09-13 00:44:58,110 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2025-09-13 00:44:58,110 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-09-13 00:44:58,111 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-09-13 00:44:58,114 [ scc.git] DEBUG Calling 'git reset --hard 2cfac69d650f339de21f9997fec0c8bcc1f4a328' 2025-09-13 00:44:58,119 [ scc.git] DEBUG HEAD is now at 2cfac69 merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6) 2025-09-13 00:44:58,549 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:44:58,549 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 2bf34ddacb511c52e473a104fe2a1c00204bae1d' 2025-09-13 00:44:58,552 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd' 2025-09-13 00:44:58,555 [ scc.git] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' Conflicting PR. Removed from build [OMERO-plugins-push#531](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/531/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/531/consoleText) for more details. Possible conflicts: - PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - package-lock.json - PR #114 dependabot[bot] 'Bump tar and fsevents' - package-lock.json - PR #115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - package-lock.json - PR #116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - package-lock.json - PR #117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' - package-lock.json --conflicts 2025-09-13 00:44:58,557 [ scc.config] DEBUG Found github.token 2025-09-13 00:44:58,557 [ scc.git] DEBUG Not adding comment to issue #118, already --conflicts. 2025-09-13 00:44:58,557 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...00257fc993a12b3f78a45db039e7bf2c8a406062' 2025-09-13 00:44:58,560 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:44:58,563 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 119 (Bump serialize-javascript and webpack) 00257fc993a12b3f78a45db039e7bf2c8a406062' 2025-09-13 00:44:58,582 [ scc.git] DEBUG Auto-merging package-lock.json 2025-09-13 00:44:58,582 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2025-09-13 00:44:58,583 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-09-13 00:44:58,583 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-09-13 00:44:58,586 [ scc.git] DEBUG Calling 'git reset --hard 2cfac69d650f339de21f9997fec0c8bcc1f4a328' 2025-09-13 00:44:58,591 [ scc.git] DEBUG HEAD is now at 2cfac69 merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6) 2025-09-13 00:44:58,963 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:44:58,963 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 00257fc993a12b3f78a45db039e7bf2c8a406062' 2025-09-13 00:44:58,966 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd' 2025-09-13 00:44:58,969 [ scc.git] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' Conflicting PR. Removed from build [OMERO-plugins-push#531](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/531/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/531/consoleText) for more details. Possible conflicts: - PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - package-lock.json - PR #114 dependabot[bot] 'Bump tar and fsevents' - package-lock.json - PR #115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - package-lock.json - PR #116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - package-lock.json - PR #117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' - package-lock.json - PR #118 dependabot[bot] 'Bump braces, webpack-cli and webpack' - package-lock.json --conflicts 2025-09-13 00:44:58,971 [ scc.config] DEBUG Found github.token 2025-09-13 00:44:58,972 [ scc.git] DEBUG Not adding comment to issue #119, already --conflicts. 2025-09-13 00:44:58,972 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-13 00:44:59,014 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:44:59,014 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:44:59,016 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-13 00:44:59,058 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-13 00:44:59,063 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb404051850> has no local changes 2025-09-13 00:44:59,063 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-gallery Already up to date. Merged PRs: - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - PR 114 dependabot[bot] 'Bump tar and fsevents' - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' Conflicting PRs (not included): - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' Generated by OMERO-plugins-push#531 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/531/)' 2025-09-13 00:44:59,070 [ scc.git] DEBUG [detached HEAD a5618d2] merge master -Dorg -Ssuccess-only 2025-09-13 00:44:59,070 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:44:59,071 [ scc.repo] DEBUG ## PRs found: 2025-09-13 00:44:59,506 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls HTTP/1.1" 200 None 2025-09-13 00:44:59,985 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/503 HTTP/1.1" 200 None 2025-09-13 00:45:00,460 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/503/comments HTTP/1.1" 200 None 2025-09-13 00:45:00,921 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/502 HTTP/1.1" 200 None 2025-09-13 00:45:01,394 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/502/comments HTTP/1.1" 200 None 2025-09-13 00:45:01,395 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-13 00:45:01,956 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/45d08b7e29871ecff0386975c975dacd0865bcc4 HTTP/1.1" 200 None 2025-09-13 00:45:02,445 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/45d08b7e29871ecff0386975c975dacd0865bcc4/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:45:02,975 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/45d08b7e29871ecff0386975c975dacd0865bcc4/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-13 00:45:03,457 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/45d08b7e29871ecff0386975c975dacd0865bcc4 HTTP/1.1" 200 None 2025-09-13 00:45:03,871 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/45d08b7e29871ecff0386975c975dacd0865bcc4?per_page=1 HTTP/1.1" 200 2 2025-09-13 00:45:03,872 [ scc.repo] DEBUG - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha' 2025-09-13 00:45:04,348 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/499 HTTP/1.1" 200 None 2025-09-13 00:45:04,349 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-13 00:45:04,902 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/b19bbac5f17ff2b53ba573ca58108d28d2d86bcc HTTP/1.1" 200 None 2025-09-13 00:45:05,413 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/b19bbac5f17ff2b53ba573ca58108d28d2d86bcc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:45:05,908 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/b19bbac5f17ff2b53ba573ca58108d28d2d86bcc/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-13 00:45:06,454 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/b19bbac5f17ff2b53ba573ca58108d28d2d86bcc HTTP/1.1" 200 None 2025-09-13 00:45:06,864 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/b19bbac5f17ff2b53ba573ca58108d28d2d86bcc?per_page=1 HTTP/1.1" 200 2 2025-09-13 00:45:06,864 [ scc.repo] DEBUG - PR 499 dependabot[bot] 'Bump nanoid and mocha' 2025-09-13 00:45:07,317 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/497 HTTP/1.1" 200 None 2025-09-13 00:45:07,760 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/497/comments HTTP/1.1" 200 None 2025-09-13 00:45:08,238 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/471 HTTP/1.1" 200 None 2025-09-13 00:45:08,691 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/471/comments HTTP/1.1" 200 None 2025-09-13 00:45:09,203 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9 HTTP/1.1" 200 None 2025-09-13 00:45:09,653 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:45:10,355 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9 HTTP/1.1" 200 None 2025-09-13 00:45:10,768 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/448d042a58da05a522531356cc58c1e35b5744d9?per_page=1 HTTP/1.1" 200 2 2025-09-13 00:45:10,769 [ scc.repo] DEBUG - PR 471 will-moore 'Z projection disabled tooltip' 2025-09-13 00:45:11,234 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/465 HTTP/1.1" 200 None 2025-09-13 00:45:11,698 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/465/comments HTTP/1.1" 200 None 2025-09-13 00:45:12,189 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/63dd9266a853ff522780066673d0ae2b770238cd HTTP/1.1" 200 None 2025-09-13 00:45:12,625 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/63dd9266a853ff522780066673d0ae2b770238cd/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:45:13,074 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/63dd9266a853ff522780066673d0ae2b770238cd HTTP/1.1" 200 None 2025-09-13 00:45:13,516 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/63dd9266a853ff522780066673d0ae2b770238cd?per_page=1 HTTP/1.1" 200 2 2025-09-13 00:45:13,516 [ scc.repo] DEBUG - PR 465 will-moore 'Save as Figure' 2025-09-13 00:45:13,977 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/460 HTTP/1.1" 200 None 2025-09-13 00:45:14,444 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/460/comments HTTP/1.1" 200 None 2025-09-13 00:45:14,963 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/dada2c46211e3bf8015cc47464ab2761ef74ca30 HTTP/1.1" 200 None 2025-09-13 00:45:15,440 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/dada2c46211e3bf8015cc47464ab2761ef74ca30/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:45:15,864 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/dada2c46211e3bf8015cc47464ab2761ef74ca30 HTTP/1.1" 200 None 2025-09-13 00:45:16,273 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/dada2c46211e3bf8015cc47464ab2761ef74ca30?per_page=1 HTTP/1.1" 200 2 2025-09-13 00:45:16,273 [ scc.repo] DEBUG - PR 460 will-moore 'Channel min spinner fix' 2025-09-13 00:45:16,771 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/227 HTTP/1.1" 200 None 2025-09-13 00:45:17,246 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/227/comments HTTP/1.1" 200 None 2025-09-13 00:45:17,735 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/a081a9f2892763bd49a7ad7ba425965150e76f97 HTTP/1.1" 200 None 2025-09-13 00:45:18,251 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/a081a9f2892763bd49a7ad7ba425965150e76f97/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:45:18,711 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/a081a9f2892763bd49a7ad7ba425965150e76f97/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-13 00:45:18,713 [ scc.repo] DEBUG ## Branches found: 2025-09-13 00:45:18,713 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer 2025-09-13 00:45:18,713 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:45:18,713 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:45:18,716 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-13 00:45:18,719 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-13 00:45:18,719 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-13 00:45:18,722 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-13 00:45:18,731 [ scc.git] DEBUG Updating 7a798ce..bb94cf8 2025-09-13 00:45:19,360 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/506 HTTP/1.1" 200 None 2025-09-13 00:45:19,361 [ scc.git] DEBUG Calling 'git fetch origin pull/460/head' 2025-09-13 00:45:19,668 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2025-09-13 00:45:19,668 [ scc.git] DEBUG * branch refs/pull/460/head -> FETCH_HEAD 2025-09-13 00:45:19,673 [ scc.git] DEBUG Calling 'git fetch origin pull/465/head' 2025-09-13 00:45:19,966 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2025-09-13 00:45:19,966 [ scc.git] DEBUG * branch refs/pull/465/head -> FETCH_HEAD 2025-09-13 00:45:19,970 [ scc.git] DEBUG Calling 'git fetch origin pull/471/head' 2025-09-13 00:45:20,256 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2025-09-13 00:45:20,256 [ scc.git] DEBUG * branch refs/pull/471/head -> FETCH_HEAD 2025-09-13 00:45:20,261 [ scc.git] DEBUG Calling 'git fetch origin pull/499/head' 2025-09-13 00:45:20,558 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2025-09-13 00:45:20,558 [ scc.git] DEBUG * branch refs/pull/499/head -> FETCH_HEAD 2025-09-13 00:45:20,562 [ scc.git] DEBUG Calling 'git fetch origin pull/502/head' 2025-09-13 00:45:20,844 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2025-09-13 00:45:20,844 [ scc.git] DEBUG * branch refs/pull/502/head -> FETCH_HEAD 2025-09-13 00:45:20,848 [ scc.git] DEBUG ## Unique users: [] 2025-09-13 00:45:20,848 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:45:20,848 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:45:20,850 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...dada2c46211e3bf8015cc47464ab2761ef74ca30' 2025-09-13 00:45:20,857 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:45:20,859 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 460 (Channel min spinner fix) dada2c46211e3bf8015cc47464ab2761ef74ca30' 2025-09-13 00:45:20,873 [ scc.git] DEBUG Auto-merging src/model/image_info.js 2025-09-13 00:45:20,873 [ scc.git] DEBUG Auto-merging src/settings/channel-range.js 2025-09-13 00:45:20,875 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-13 00:45:20,879 [ scc.git] DEBUG src/model/image_info.js | 7 ++++--- 2025-09-13 00:45:20,879 [ scc.git] DEBUG src/settings/channel-range.js | 4 +++- 2025-09-13 00:45:20,879 [ scc.git] DEBUG 2 files changed, 7 insertions(+), 4 deletions(-) 2025-09-13 00:45:21,048 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:45:21,049 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...63dd9266a853ff522780066673d0ae2b770238cd' 2025-09-13 00:45:21,055 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:45:21,058 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 465 (Save as Figure) 63dd9266a853ff522780066673d0ae2b770238cd' 2025-09-13 00:45:21,078 [ scc.git] DEBUG Auto-merging plugin/omero_iviewer/views.py 2025-09-13 00:45:21,078 [ scc.git] DEBUG Auto-merging src/app/context.js 2025-09-13 00:45:21,078 [ scc.git] DEBUG Auto-merging src/utils/constants.js 2025-09-13 00:45:21,078 [ scc.git] DEBUG Auto-merging src/viewers/viewer/Viewer.js 2025-09-13 00:45:21,079 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-13 00:45:21,084 [ scc.git] DEBUG plugin/omero_iviewer/views.py | 17 +++- 2025-09-13 00:45:21,084 [ scc.git] DEBUG src/app/context.js | 6 +- 2025-09-13 00:45:21,084 [ scc.git] DEBUG src/app/header.html | 5 + 2025-09-13 00:45:21,084 [ scc.git] DEBUG src/app/header.js | 45 ++++++++- 2025-09-13 00:45:21,084 [ scc.git] DEBUG src/utils/constants.js | 6 ++ 2025-09-13 00:45:21,084 [ scc.git] DEBUG src/utils/figure.js | 217 ++++++++++++++++++++++++++++++++++++++++++ 2025-09-13 00:45:21,084 [ scc.git] DEBUG 6 files changed, 290 insertions(+), 6 deletions(-) 2025-09-13 00:45:21,084 [ scc.git] DEBUG create mode 100644 src/utils/figure.js 2025-09-13 00:45:21,441 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:45:21,441 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...448d042a58da05a522531356cc58c1e35b5744d9' 2025-09-13 00:45:21,448 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:45:21,450 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 471 (Z projection disabled tooltip) 448d042a58da05a522531356cc58c1e35b5744d9' 2025-09-13 00:45:21,464 [ scc.git] DEBUG Auto-merging src/controls/dimension-slider.js 2025-09-13 00:45:21,466 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-13 00:45:21,469 [ scc.git] DEBUG src/controls/dimension-slider.html | 2 +- 2025-09-13 00:45:21,469 [ scc.git] DEBUG src/controls/dimension-slider.js | 20 ++++++++++++++++++++ 2025-09-13 00:45:21,469 [ scc.git] DEBUG 2 files changed, 21 insertions(+), 1 deletion(-) 2025-09-13 00:45:21,838 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:45:21,839 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b19bbac5f17ff2b53ba573ca58108d28d2d86bcc' 2025-09-13 00:45:21,846 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:45:21,848 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 499 (Bump nanoid and mocha) b19bbac5f17ff2b53ba573ca58108d28d2d86bcc' 2025-09-13 00:45:21,866 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-13 00:45:21,877 [ scc.git] DEBUG package-lock.json | 322 +++++++++++++++++++++++++++--------------------------- 2025-09-13 00:45:21,877 [ scc.git] DEBUG package.json | 2 +- 2025-09-13 00:45:21,877 [ scc.git] DEBUG 2 files changed, 163 insertions(+), 161 deletions(-) 2025-09-13 00:45:22,245 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:45:22,245 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45d08b7e29871ecff0386975c975dacd0865bcc4' 2025-09-13 00:45:22,252 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:45:22,255 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 502 (Bump serialize-javascript and mocha) 45d08b7e29871ecff0386975c975dacd0865bcc4' 2025-09-13 00:45:22,291 [ scc.git] DEBUG Auto-merging package-lock.json 2025-09-13 00:45:22,291 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2025-09-13 00:45:22,292 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-09-13 00:45:22,292 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-09-13 00:45:22,295 [ scc.git] DEBUG Calling 'git reset --hard e6ec091602674c200cf2367d455c48e48f0fe90e' 2025-09-13 00:45:22,304 [ scc.git] DEBUG HEAD is now at e6ec091 merge master -Dorg -Ssuccess-only: PR 499 (Bump nanoid and mocha) 2025-09-13 00:45:22,645 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:45:22,645 [ scc.git] DEBUG Calling 'git merge-base bb94cf8da960e3283090038b04432f301560f5e4 45d08b7e29871ecff0386975c975dacd0865bcc4' 2025-09-13 00:45:22,648 [ scc.git] DEBUG Calling 'git diff --name-only 7a798ceeb3926d049d73788555fb63269a071052..bb94cf8da960e3283090038b04432f301560f5e4' 2025-09-13 00:45:22,651 [ scc.git] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha' Conflicting PR. Removed from build [OMERO-plugins-push#531](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/531/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/531/consoleText) for more details. Possible conflicts: - PR #499 dependabot[bot] 'Bump nanoid and mocha' - package-lock.json --conflicts 2025-09-13 00:45:22,654 [ scc.config] DEBUG Found github.token 2025-09-13 00:45:22,654 [ scc.git] DEBUG Not adding comment to issue #502, already --conflicts. 2025-09-13 00:45:22,654 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-13 00:45:22,696 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:45:22,696 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:45:22,699 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-13 00:45:22,738 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-13 00:45:22,745 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb405a8c190> has no local changes 2025-09-13 00:45:22,745 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-iviewer Excluded PRs: - PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft) - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft) - PR 420 will-moore 'Add release process to README' (exclude comment) - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment) - PR 227 will-moore 'Vectortile investigation' (status: failure) Updating 7a798ce..bb94cf8 Previously merged: - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 460 will-moore 'Channel min spinner fix' - PR 465 will-moore 'Save as Figure' - PR 471 will-moore 'Z projection disabled tooltip' - PR 499 dependabot[bot] 'Bump nanoid and mocha' Conflicting PRs (not included): - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha' Generated by OMERO-plugins-push#531 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/531/)' 2025-09-13 00:45:22,755 [ scc.git] DEBUG [detached HEAD d5453b8] merge master -Dorg -Ssuccess-only 2025-09-13 00:45:22,755 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:45:22,755 [ scc.repo] DEBUG ## PRs found: 2025-09-13 00:45:23,270 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/pulls HTTP/1.1" 200 None 2025-09-13 00:45:23,741 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95 HTTP/1.1" 200 None 2025-09-13 00:45:24,226 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95/comments HTTP/1.1" 200 None 2025-09-13 00:45:24,226 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-13 00:45:24,856 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99 HTTP/1.1" 200 None 2025-09-13 00:45:25,369 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:45:25,853 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-13 00:45:26,318 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99 HTTP/1.1" 200 None 2025-09-13 00:45:26,744 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/38cc352a088eaedfaa2dd8874c4f200f98f41a99?per_page=1 HTTP/1.1" 200 2 2025-09-13 00:45:26,744 [ scc.repo] DEBUG - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-13 00:45:27,230 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/94 HTTP/1.1" 200 None 2025-09-13 00:45:27,771 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None 2025-09-13 00:45:28,214 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:45:28,660 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None 2025-09-13 00:45:29,067 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1896cfebc876f939f8d83bd1cf56b8584ff2921d?per_page=1 HTTP/1.1" 200 2 2025-09-13 00:45:29,067 [ scc.repo] DEBUG - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2025-09-13 00:45:29,516 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None 2025-09-13 00:45:29,981 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None 2025-09-13 00:45:30,993 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None 2025-09-13 00:45:31,441 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:45:31,877 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None 2025-09-13 00:45:32,281 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/45ee35acc44a7d119aa20b38b0427efbe5405322?per_page=1 HTTP/1.1" 200 2 2025-09-13 00:45:32,282 [ scc.repo] DEBUG - PR 74 will-moore 'mapr extension of webclient' 2025-09-13 00:45:32,282 [ scc.repo] DEBUG ## Branches found: 2025-09-13 00:45:32,282 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr 2025-09-13 00:45:32,282 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:45:32,282 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:45:32,285 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-13 00:45:32,288 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-13 00:45:32,288 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-13 00:45:32,291 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-13 00:45:32,294 [ scc.git] DEBUG Already up to date. 2025-09-13 00:45:32,294 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head' 2025-09-13 00:45:32,591 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2025-09-13 00:45:32,591 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD 2025-09-13 00:45:32,596 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head' 2025-09-13 00:45:32,872 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2025-09-13 00:45:32,872 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD 2025-09-13 00:45:32,877 [ scc.git] DEBUG Calling 'git fetch origin pull/95/head' 2025-09-13 00:45:33,149 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2025-09-13 00:45:33,149 [ scc.git] DEBUG * branch refs/pull/95/head -> FETCH_HEAD 2025-09-13 00:45:33,154 [ scc.git] DEBUG ## Unique users: [] 2025-09-13 00:45:33,154 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:45:33,154 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:45:33,156 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45ee35acc44a7d119aa20b38b0427efbe5405322' 2025-09-13 00:45:33,160 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:45:33,163 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (mapr extension of webclient) 45ee35acc44a7d119aa20b38b0427efbe5405322' 2025-09-13 00:45:33,172 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-13 00:45:33,176 [ scc.git] DEBUG .../templates/webclient/base/base_container.html | 182 +++++++++++++ 2025-09-13 00:45:33,176 [ scc.git] DEBUG .../data/includes/right_plugin.general.js.html | 290 --------------------- 2025-09-13 00:45:33,176 [ scc.git] DEBUG requirements.txt | 2 +- 2025-09-13 00:45:33,176 [ scc.git] DEBUG 3 files changed, 183 insertions(+), 291 deletions(-) 2025-09-13 00:45:33,176 [ scc.git] DEBUG create mode 100644 omero_mapr/templates/webclient/base/base_container.html 2025-09-13 00:45:33,176 [ scc.git] DEBUG delete mode 100644 omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html 2025-09-13 00:45:33,337 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:45:33,338 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d' 2025-09-13 00:45:33,342 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:45:33,344 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d' 2025-09-13 00:45:33,353 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-13 00:45:33,356 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-09-13 00:45:33,356 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-09-13 00:45:33,765 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:45:33,766 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38cc352a088eaedfaa2dd8874c4f200f98f41a99' 2025-09-13 00:45:33,770 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:45:33,772 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 95 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 38cc352a088eaedfaa2dd8874c4f200f98f41a99' 2025-09-13 00:45:33,781 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml 2025-09-13 00:45:33,781 [ scc.git] DEBUG CONFLICT (content): Merge conflict in .github/workflows/publish_pypi.yml 2025-09-13 00:45:33,782 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-09-13 00:45:33,782 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-09-13 00:45:33,785 [ scc.git] DEBUG Calling 'git reset --hard b7c05d38d1c9db177d40b1fa58e80a4ad6fed8c3' 2025-09-13 00:45:33,789 [ scc.git] DEBUG HEAD is now at b7c05d3 merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 2025-09-13 00:45:34,153 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:45:34,153 [ scc.git] DEBUG Calling 'git merge-base 0a557da89145e65db313c1721a26cb43e490dd8a 38cc352a088eaedfaa2dd8874c4f200f98f41a99' 2025-09-13 00:45:34,156 [ scc.git] DEBUG Calling 'git diff --name-only 0a557da89145e65db313c1721a26cb43e490dd8a..0a557da89145e65db313c1721a26cb43e490dd8a' 2025-09-13 00:45:34,159 [ scc.git] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Conflicting PR. Removed from build [OMERO-plugins-push#531](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/531/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/531/consoleText) for more details. Possible conflicts: - PR #94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' - .github/workflows/publish_pypi.yml --conflicts 2025-09-13 00:45:34,161 [ scc.config] DEBUG Found github.token 2025-09-13 00:45:34,161 [ scc.git] DEBUG Not adding comment to issue #95, already --conflicts. 2025-09-13 00:45:34,161 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-13 00:45:34,202 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:45:34,203 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:45:34,205 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-13 00:45:34,245 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-13 00:45:34,249 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb405a1e310> has no local changes 2025-09-13 00:45:34,249 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-mapr Excluded PRs: - PR 79 will-moore 'Right panel title' (exclude comment) Already up to date. Merged PRs: - PR 74 will-moore 'mapr extension of webclient' - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Conflicting PRs (not included): - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#531 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/531/)' 2025-09-13 00:45:34,256 [ scc.git] DEBUG [detached HEAD c16ddda] merge master -Dorg -Ssuccess-only 2025-09-13 00:45:34,256 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:45:34,256 [ scc.repo] DEBUG ## PRs found: 2025-09-13 00:45:34,677 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None 2025-09-13 00:45:35,134 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None 2025-09-13 00:45:35,586 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None 2025-09-13 00:45:36,104 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None 2025-09-13 00:45:36,577 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:45:37,030 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None 2025-09-13 00:45:37,463 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2 2025-09-13 00:45:37,463 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate' 2025-09-13 00:45:37,919 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None 2025-09-13 00:45:38,359 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None 2025-09-13 00:45:38,861 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None 2025-09-13 00:45:39,335 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:45:39,810 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None 2025-09-13 00:45:40,228 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2 2025-09-13 00:45:40,228 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names' 2025-09-13 00:45:40,228 [ scc.repo] DEBUG ## Branches found: 2025-09-13 00:45:40,228 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata 2025-09-13 00:45:40,228 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:45:40,228 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:45:40,231 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-13 00:45:40,234 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-13 00:45:40,234 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-13 00:45:40,237 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-13 00:45:40,245 [ scc.git] DEBUG Updating 3cd120c..55060a2 2025-09-13 00:45:40,880 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None 2025-09-13 00:45:40,881 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head' 2025-09-13 00:45:41,171 [ scc.git] DEBUG From https://github.com/ome/omero-metadata 2025-09-13 00:45:41,171 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD 2025-09-13 00:45:41,176 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head' 2025-09-13 00:45:41,453 [ scc.git] DEBUG From https://github.com/ome/omero-metadata 2025-09-13 00:45:41,453 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD 2025-09-13 00:45:41,458 [ scc.git] DEBUG ## Unique users: [] 2025-09-13 00:45:41,458 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:45:41,458 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:45:41,461 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102' 2025-09-13 00:45:41,465 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:45:41,468 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102' 2025-09-13 00:45:41,481 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py 2025-09-13 00:45:41,481 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py 2025-09-13 00:45:41,481 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py 2025-09-13 00:45:41,481 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py 2025-09-13 00:45:41,481 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-09-13 00:45:41,482 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-09-13 00:45:41,484 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501' 2025-09-13 00:45:41,489 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action 2025-09-13 00:45:41,628 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:45:41,629 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102' 2025-09-13 00:45:41,634 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501' 2025-09-13 00:45:41,637 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names' Conflicting PR. Removed from build [OMERO-plugins-push#531](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/531/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/531/consoleText) for more details. Possible conflicts: - Upstream changes - src/omero_metadata/cli.py - src/omero_metadata/populate.py --conflicts 2025-09-13 00:45:41,639 [ scc.config] DEBUG Found github.token 2025-09-13 00:45:41,639 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts. 2025-09-13 00:45:41,639 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7' 2025-09-13 00:45:41,644 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:45:41,646 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7' 2025-09-13 00:45:41,662 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py 2025-09-13 00:45:41,662 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py 2025-09-13 00:45:41,662 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py 2025-09-13 00:45:41,662 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-09-13 00:45:41,663 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-09-13 00:45:41,666 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501' 2025-09-13 00:45:41,671 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action 2025-09-13 00:45:42,022 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:45:42,022 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7' 2025-09-13 00:45:42,027 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501' 2025-09-13 00:45:42,030 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate' Conflicting PR. Removed from build [OMERO-plugins-push#531](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/531/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/531/consoleText) for more details. Possible conflicts: - PR #55 kkoz 'Prevent users from creating columns with python keyword names' - src/omero_metadata/populate.py - Upstream changes - src/omero_metadata/populate.py --conflicts 2025-09-13 00:45:42,032 [ scc.config] DEBUG Found github.token 2025-09-13 00:45:42,032 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts. 2025-09-13 00:45:42,032 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-13 00:45:42,073 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:45:42,073 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:45:42,075 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-13 00:45:42,114 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-13 00:45:42,118 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb405996750> has no local changes 2025-09-13 00:45:42,118 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-metadata Updating 3cd120c..55060a2 Previously merged: - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Conflicting PRs (not included): - PR 55 kkoz 'Prevent users from creating columns with python keyword names' - PR 64 will-moore 'Support images_by_name for Screen and Plate' Generated by OMERO-plugins-push#531 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/531/)' 2025-09-13 00:45:42,125 [ scc.git] DEBUG [detached HEAD 710c431] merge master -Dorg -Ssuccess-only 2025-09-13 00:45:42,125 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:45:42,126 [ scc.repo] DEBUG ## PRs found: 2025-09-13 00:45:42,590 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None 2025-09-13 00:45:43,047 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None 2025-09-13 00:45:43,546 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None 2025-09-13 00:45:44,039 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:45:44,506 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-13 00:45:44,989 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None 2025-09-13 00:45:45,423 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2 2025-09-13 00:45:45,424 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2025-09-13 00:45:45,885 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None 2025-09-13 00:45:45,885 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-13 00:45:46,443 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None 2025-09-13 00:45:46,967 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:45:47,505 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-13 00:45:48,022 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None 2025-09-13 00:45:48,435 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2 2025-09-13 00:45:48,436 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' 2025-09-13 00:45:48,907 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None 2025-09-13 00:45:48,907 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-13 00:45:49,457 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None 2025-09-13 00:45:49,956 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:45:50,528 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-13 00:45:50,973 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None 2025-09-13 00:45:51,405 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2 2025-09-13 00:45:51,406 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' 2025-09-13 00:45:51,864 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None 2025-09-13 00:45:52,327 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None 2025-09-13 00:45:52,763 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None 2025-09-13 00:45:53,236 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None 2025-09-13 00:45:53,699 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None 2025-09-13 00:45:54,149 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None 2025-09-13 00:45:54,656 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None 2025-09-13 00:45:54,658 [ scc.repo] DEBUG ## Branches found: 2025-09-13 00:45:54,658 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade 2025-09-13 00:45:54,658 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:45:54,658 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:45:54,661 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-13 00:45:54,664 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-13 00:45:54,664 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-13 00:45:54,667 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-13 00:45:54,670 [ scc.git] DEBUG Already up to date. 2025-09-13 00:45:54,670 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head' 2025-09-13 00:45:54,957 [ scc.git] DEBUG From https://github.com/ome/omero-parade 2025-09-13 00:45:54,957 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD 2025-09-13 00:45:54,962 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head' 2025-09-13 00:45:55,248 [ scc.git] DEBUG From https://github.com/ome/omero-parade 2025-09-13 00:45:55,248 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD 2025-09-13 00:45:55,252 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head' 2025-09-13 00:45:55,528 [ scc.git] DEBUG From https://github.com/ome/omero-parade 2025-09-13 00:45:55,528 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD 2025-09-13 00:45:55,532 [ scc.git] DEBUG ## Unique users: [] 2025-09-13 00:45:55,532 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:45:55,532 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:45:55,535 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0' 2025-09-13 00:45:55,538 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:45:55,540 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0' 2025-09-13 00:45:55,549 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-13 00:45:55,552 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++---------------------------- 2025-09-13 00:45:55,552 [ scc.git] DEBUG package.json | 2 +- 2025-09-13 00:45:55,552 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-) 2025-09-13 00:45:55,691 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:45:55,691 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80' 2025-09-13 00:45:55,694 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:45:55,697 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80' 2025-09-13 00:45:55,707 [ scc.git] DEBUG Auto-merging package-lock.json 2025-09-13 00:45:55,707 [ scc.git] DEBUG Auto-merging package.json 2025-09-13 00:45:55,708 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-13 00:45:55,711 [ scc.git] DEBUG package-lock.json | 18 ++++++++++-------- 2025-09-13 00:45:55,711 [ scc.git] DEBUG package.json | 2 +- 2025-09-13 00:45:55,711 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-) 2025-09-13 00:45:56,076 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:45:56,077 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0' 2025-09-13 00:45:56,080 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:45:56,083 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0' 2025-09-13 00:45:56,091 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-13 00:45:56,094 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-09-13 00:45:56,094 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-09-13 00:45:56,482 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:45:56,483 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-13 00:45:56,525 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:45:56,525 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:45:56,527 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-13 00:45:56,567 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-13 00:45:56,571 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb40407a0d0> has no local changes 2025-09-13 00:45:56,571 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-parade Excluded PRs: - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft) - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment) - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment) - PR 39 chris-allan 'Expand all for Screens' (exclude comment) Already up to date. Merged PRs: - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Generated by OMERO-plugins-push#531 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/531/)' 2025-09-13 00:45:56,578 [ scc.git] DEBUG [detached HEAD ddc90bf] merge master -Dorg -Ssuccess-only 2025-09-13 00:45:56,578 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:45:56,578 [ scc.repo] DEBUG ## PRs found: 2025-09-13 00:45:56,977 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None 2025-09-13 00:45:57,444 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/16 HTTP/1.1" 200 None 2025-09-13 00:45:57,445 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-13 00:45:58,040 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None 2025-09-13 00:45:58,567 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:45:59,083 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-13 00:45:59,627 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None 2025-09-13 00:46:00,052 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/5381b9f25e1666d81d236039a1317276291e9b2e?per_page=1 HTTP/1.1" 200 2 2025-09-13 00:46:00,053 [ scc.repo] DEBUG - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-13 00:46:00,053 [ scc.repo] DEBUG ## Branches found: 2025-09-13 00:46:00,053 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools 2025-09-13 00:46:00,053 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:46:00,053 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:46:00,055 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-13 00:46:00,058 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-13 00:46:00,058 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-13 00:46:00,061 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-13 00:46:00,064 [ scc.git] DEBUG Already up to date. 2025-09-13 00:46:00,064 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head' 2025-09-13 00:46:00,349 [ scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools 2025-09-13 00:46:00,349 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD 2025-09-13 00:46:00,353 [ scc.git] DEBUG ## Unique users: [] 2025-09-13 00:46:00,353 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:46:00,353 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:46:00,356 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5381b9f25e1666d81d236039a1317276291e9b2e' 2025-09-13 00:46:00,359 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:46:00,361 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 5381b9f25e1666d81d236039a1317276291e9b2e' 2025-09-13 00:46:00,369 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-13 00:46:00,371 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-09-13 00:46:00,372 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-09-13 00:46:00,533 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:46:00,534 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-13 00:46:00,575 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:46:00,575 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:46:00,577 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-13 00:46:00,617 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-13 00:46:00,620 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb4040b3690> has no local changes 2025-09-13 00:46:00,620 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-prometheus-tools Already up to date. Merged PRs: - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#531 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/531/)' 2025-09-13 00:46:00,627 [ scc.git] DEBUG [detached HEAD aea556e] merge master -Dorg -Ssuccess-only 2025-09-13 00:46:00,627 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:46:00,627 [ scc.repo] DEBUG ## PRs found: 2025-09-13 00:46:01,099 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None 2025-09-13 00:46:01,583 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/34 HTTP/1.1" 200 None 2025-09-13 00:46:01,583 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-13 00:46:02,136 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None 2025-09-13 00:46:02,619 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:46:03,096 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-13 00:46:03,685 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None 2025-09-13 00:46:04,132 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/149bb248277256d589ea0db597c04739e8134301?per_page=1 HTTP/1.1" 200 None 2025-09-13 00:46:04,697 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None 2025-09-13 00:46:05,173 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/status HTTP/1.1" 200 None 2025-09-13 00:46:05,173 [ scc.repo] DEBUG - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-13 00:46:05,687 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33 HTTP/1.1" 200 None 2025-09-13 00:46:06,141 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33/comments HTTP/1.1" 200 None 2025-09-13 00:46:06,665 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None 2025-09-13 00:46:07,130 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:46:07,627 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-13 00:46:08,177 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None 2025-09-13 00:46:08,642 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/1122baea98746effd4eb59deed25870f673ce3d3?per_page=1 HTTP/1.1" 200 None 2025-09-13 00:46:09,090 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None 2025-09-13 00:46:09,525 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/status HTTP/1.1" 200 None 2025-09-13 00:46:09,525 [ scc.repo] DEBUG - PR 33 jo-mueller 'Add roi to array functions' 2025-09-13 00:46:09,975 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None 2025-09-13 00:46:09,975 [ scc.repo] DEBUG ## Branches found: 2025-09-13 00:46:09,975 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois 2025-09-13 00:46:09,975 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:46:09,975 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:46:09,978 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-13 00:46:09,981 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-13 00:46:09,981 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-13 00:46:09,984 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-13 00:46:09,987 [ scc.git] DEBUG Already up to date. 2025-09-13 00:46:09,987 [ scc.git] DEBUG Calling 'git fetch origin pull/33/head' 2025-09-13 00:46:10,273 [ scc.git] DEBUG From https://github.com/ome/omero-rois 2025-09-13 00:46:10,273 [ scc.git] DEBUG * branch refs/pull/33/head -> FETCH_HEAD 2025-09-13 00:46:10,277 [ scc.git] DEBUG Calling 'git fetch origin pull/34/head' 2025-09-13 00:46:10,552 [ scc.git] DEBUG From https://github.com/ome/omero-rois 2025-09-13 00:46:10,552 [ scc.git] DEBUG * branch refs/pull/34/head -> FETCH_HEAD 2025-09-13 00:46:10,556 [ scc.git] DEBUG ## Unique users: [] 2025-09-13 00:46:10,557 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:46:10,557 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:46:10,559 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1122baea98746effd4eb59deed25870f673ce3d3' 2025-09-13 00:46:10,562 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:46:10,564 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 33 (Add roi to array functions) 1122baea98746effd4eb59deed25870f673ce3d3' 2025-09-13 00:46:10,573 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-13 00:46:10,576 [ scc.git] DEBUG setup.py | 4 +- 2025-09-13 00:46:10,577 [ scc.git] DEBUG src/omero_rois/__init__.py | 4 + 2025-09-13 00:46:10,577 [ scc.git] DEBUG src/omero_rois/library.py | 204 +++++++++++++++++++++++++++++++++++++++++++-- 2025-09-13 00:46:10,577 [ scc.git] DEBUG 3 files changed, 203 insertions(+), 9 deletions(-) 2025-09-13 00:46:10,717 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:46:10,717 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...149bb248277256d589ea0db597c04739e8134301' 2025-09-13 00:46:10,720 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:46:10,723 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 34 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 149bb248277256d589ea0db597c04739e8134301' 2025-09-13 00:46:10,731 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-13 00:46:10,734 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-09-13 00:46:10,734 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-09-13 00:46:11,102 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:46:11,102 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-13 00:46:11,143 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:46:11,143 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:46:11,145 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-13 00:46:11,185 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-13 00:46:11,188 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb4040d7650> has no local changes 2025-09-13 00:46:11,188 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-rois Excluded PRs: - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) Already up to date. Merged PRs: - PR 33 jo-mueller 'Add roi to array functions' - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#531 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/531/)' 2025-09-13 00:46:11,195 [ scc.git] DEBUG [detached HEAD 14c0a9d] merge master -Dorg -Ssuccess-only 2025-09-13 00:46:11,195 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:46:11,196 [ scc.repo] DEBUG ## PRs found: 2025-09-13 00:46:11,676 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None 2025-09-13 00:46:12,149 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/22 HTTP/1.1" 200 None 2025-09-13 00:46:12,150 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-13 00:46:12,723 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None 2025-09-13 00:46:13,221 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:46:13,716 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-13 00:46:14,139 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None 2025-09-13 00:46:14,574 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/8b27e47a330555e99e9594f0c4b546946f4f98aa?per_page=1 HTTP/1.1" 200 2 2025-09-13 00:46:14,574 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-13 00:46:15,077 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None 2025-09-13 00:46:15,594 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None 2025-09-13 00:46:16,197 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None 2025-09-13 00:46:16,657 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:46:17,183 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None 2025-09-13 00:46:17,618 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2 2025-09-13 00:46:17,618 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)' 2025-09-13 00:46:17,618 [ scc.repo] DEBUG ## Branches found: 2025-09-13 00:46:17,618 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup 2025-09-13 00:46:17,618 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:46:17,618 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:46:17,621 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-13 00:46:17,624 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-13 00:46:17,624 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-13 00:46:17,627 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-13 00:46:17,630 [ scc.git] DEBUG Already up to date. 2025-09-13 00:46:17,630 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head' 2025-09-13 00:46:17,914 [ scc.git] DEBUG From https://github.com/ome/omero-signup 2025-09-13 00:46:17,914 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD 2025-09-13 00:46:17,919 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head' 2025-09-13 00:46:18,199 [ scc.git] DEBUG From https://github.com/ome/omero-signup 2025-09-13 00:46:18,199 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD 2025-09-13 00:46:18,203 [ scc.git] DEBUG ## Unique users: [] 2025-09-13 00:46:18,203 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:46:18,204 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:46:18,206 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d' 2025-09-13 00:46:18,209 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:46:18,212 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d' 2025-09-13 00:46:18,221 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py 2025-09-13 00:46:18,221 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py 2025-09-13 00:46:18,221 [ scc.git] DEBUG Auto-merging omero_signup/urls.py 2025-09-13 00:46:18,221 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py 2025-09-13 00:46:18,221 [ scc.git] DEBUG Auto-merging omero_signup/views.py 2025-09-13 00:46:18,221 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py 2025-09-13 00:46:18,221 [ scc.git] DEBUG Auto-merging setup.py 2025-09-13 00:46:18,221 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py 2025-09-13 00:46:18,221 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-09-13 00:46:18,221 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-09-13 00:46:18,224 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e' 2025-09-13 00:46:18,230 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build 2025-09-13 00:46:18,371 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:46:18,371 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d' 2025-09-13 00:46:18,375 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e' 2025-09-13 00:46:18,378 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)' Conflicting PR. Removed from build [OMERO-plugins-push#531](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/531/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/531/consoleText) for more details. Possible conflicts: - Upstream changes - omero_signup/signup_settings.py - omero_signup/views.py - omero_signup/urls.py - setup.py --conflicts 2025-09-13 00:46:18,380 [ scc.config] DEBUG Found github.token 2025-09-13 00:46:18,380 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts. 2025-09-13 00:46:18,380 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8b27e47a330555e99e9594f0c4b546946f4f98aa' 2025-09-13 00:46:18,383 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:46:18,385 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8b27e47a330555e99e9594f0c4b546946f4f98aa' 2025-09-13 00:46:18,393 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-13 00:46:18,396 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-09-13 00:46:18,396 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-09-13 00:46:18,786 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:46:18,786 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-13 00:46:18,826 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:46:18,827 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:46:18,829 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-13 00:46:18,870 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-13 00:46:18,874 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb4040e6950> has no local changes 2025-09-13 00:46:18,874 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-signup Already up to date. Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Conflicting PRs (not included): - PR 14 manics 'Add pre-commit (black, flake8)' Generated by OMERO-plugins-push#531 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/531/)' 2025-09-13 00:46:18,881 [ scc.git] DEBUG [detached HEAD ffe8598] merge master -Dorg -Ssuccess-only 2025-09-13 00:46:18,882 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:46:18,882 [ scc.repo] DEBUG ## PRs found: 2025-09-13 00:46:19,305 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None 2025-09-13 00:46:19,767 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/76 HTTP/1.1" 200 None 2025-09-13 00:46:20,349 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None 2025-09-13 00:46:20,854 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:46:21,321 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-13 00:46:21,891 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None 2025-09-13 00:46:22,314 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6?per_page=1 HTTP/1.1" 200 2 2025-09-13 00:46:22,314 [ scc.repo] DEBUG - PR 76 will-moore 'Run cli deps' 2025-09-13 00:46:22,783 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None 2025-09-13 00:46:23,242 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None 2025-09-13 00:46:23,746 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None 2025-09-13 00:46:24,226 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:46:24,703 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-13 00:46:25,206 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73 HTTP/1.1" 200 None 2025-09-13 00:46:25,660 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73/comments HTTP/1.1" 200 None 2025-09-13 00:46:26,155 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12 HTTP/1.1" 200 None 2025-09-13 00:46:26,608 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12/comments HTTP/1.1" 200 None 2025-09-13 00:46:27,120 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None 2025-09-13 00:46:27,569 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:46:28,036 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None 2025-09-13 00:46:28,446 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/425319051224e8481afc40083fd9b5db4bc99928?per_page=1 HTTP/1.1" 200 2 2025-09-13 00:46:28,447 [ scc.repo] DEBUG - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra' 2025-09-13 00:46:28,447 [ scc.repo] DEBUG ## Branches found: 2025-09-13 00:46:28,447 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra 2025-09-13 00:46:28,447 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:46:28,447 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:46:28,450 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-13 00:46:28,452 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-13 00:46:28,453 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-13 00:46:28,456 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-13 00:46:28,459 [ scc.git] DEBUG Already up to date. 2025-09-13 00:46:28,459 [ scc.git] DEBUG Calling 'git fetch origin pull/12/head' 2025-09-13 00:46:28,754 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra 2025-09-13 00:46:28,754 [ scc.git] DEBUG * branch refs/pull/12/head -> FETCH_HEAD 2025-09-13 00:46:28,759 [ scc.git] DEBUG Calling 'git fetch origin pull/76/head' 2025-09-13 00:46:29,051 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra 2025-09-13 00:46:29,051 [ scc.git] DEBUG * branch refs/pull/76/head -> FETCH_HEAD 2025-09-13 00:46:29,055 [ scc.git] DEBUG ## Unique users: [] 2025-09-13 00:46:29,055 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:46:29,055 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:46:29,058 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...425319051224e8481afc40083fd9b5db4bc99928' 2025-09-13 00:46:29,062 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:46:29,064 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 12 (IDR: use downloaded ansible templates & variables to configure infra) 425319051224e8481afc40083fd9b5db4bc99928' 2025-09-13 00:46:29,077 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-13 00:46:29,080 [ scc.git] DEBUG idr-compose.yml | 66 ++++++++++++++ 2025-09-13 00:46:29,080 [ scc.git] DEBUG idr-haproxy.yml | 58 +++++++++++++ 2025-09-13 00:46:29,080 [ scc.git] DEBUG idr/40-ansible.sh | 7 ++ 2025-09-13 00:46:29,080 [ scc.git] DEBUG idr/70-reset-password.sh | 1 + 2025-09-13 00:46:29,080 [ scc.git] DEBUG idr/nginx/conf.d/default.conf | 1 + 2025-09-13 00:46:29,080 [ scc.git] DEBUG idr/nginx/conf.d/example_ssl.conf | 1 + 2025-09-13 00:46:29,080 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cache.conf | 53 +++++++++++ 2025-09-13 00:46:29,081 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cachebuster.conf | 114 ++++++++++++++++++++++++ 2025-09-13 00:46:29,081 [ scc.git] DEBUG idr/nginx/conf.d/proxy-default.conf | 135 +++++++++++++++++++++++++++++ 2025-09-13 00:46:29,081 [ scc.git] DEBUG idr/nginx/conf.d/proxy-omeroreadwrite.conf | 115 ++++++++++++++++++++++++ 2025-09-13 00:46:29,081 [ scc.git] DEBUG idr/nginx/conf.d/proxy-redirect.conf | 15 ++++ 2025-09-13 00:46:29,082 [ scc.git] DEBUG idr/nginx/conf.d/proxy-upstream.conf | 13 +++ 2025-09-13 00:46:29,082 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v0.conf | 26 ++++++ 2025-09-13 00:46:29,082 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v1.conf | 30 +++++++ 2025-09-13 00:46:29,082 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v2.conf | 30 +++++++ 2025-09-13 00:46:29,082 [ scc.git] DEBUG idr/nginx/conf.d/proxy-websockets.conf | 6 ++ 2025-09-13 00:46:29,082 [ scc.git] DEBUG idr/nginx/nginx.conf | 53 +++++++++++ 2025-09-13 00:46:29,082 [ scc.git] DEBUG idr/omero/Dockerfile | 3 + 2025-09-13 00:46:29,082 [ scc.git] DEBUG idr/omero/playbook.yml | 41 +++++++++ 2025-09-13 00:46:29,082 [ scc.git] DEBUG idr/redirect/Dockerfile | 6 ++ 2025-09-13 00:46:29,082 [ scc.git] DEBUG idr/web/Dockerfile | 5 ++ 2025-09-13 00:46:29,082 [ scc.git] DEBUG idr/web/playbook.yml | 45 ++++++++++ 2025-09-13 00:46:29,082 [ scc.git] DEBUG 22 files changed, 824 insertions(+) 2025-09-13 00:46:29,082 [ scc.git] DEBUG create mode 100644 idr-compose.yml 2025-09-13 00:46:29,082 [ scc.git] DEBUG create mode 100644 idr-haproxy.yml 2025-09-13 00:46:29,082 [ scc.git] DEBUG create mode 100755 idr/40-ansible.sh 2025-09-13 00:46:29,082 [ scc.git] DEBUG create mode 100755 idr/70-reset-password.sh 2025-09-13 00:46:29,082 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/default.conf 2025-09-13 00:46:29,082 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/example_ssl.conf 2025-09-13 00:46:29,082 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cache.conf 2025-09-13 00:46:29,082 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cachebuster.conf 2025-09-13 00:46:29,082 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-default.conf 2025-09-13 00:46:29,082 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-omeroreadwrite.conf 2025-09-13 00:46:29,082 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-redirect.conf 2025-09-13 00:46:29,082 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-upstream.conf 2025-09-13 00:46:29,082 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v0.conf 2025-09-13 00:46:29,082 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v1.conf 2025-09-13 00:46:29,082 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v2.conf 2025-09-13 00:46:29,082 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-websockets.conf 2025-09-13 00:46:29,082 [ scc.git] DEBUG create mode 100644 idr/nginx/nginx.conf 2025-09-13 00:46:29,082 [ scc.git] DEBUG create mode 100644 idr/omero/Dockerfile 2025-09-13 00:46:29,082 [ scc.git] DEBUG create mode 100644 idr/omero/playbook.yml 2025-09-13 00:46:29,083 [ scc.git] DEBUG create mode 100644 idr/redirect/Dockerfile 2025-09-13 00:46:29,083 [ scc.git] DEBUG create mode 100644 idr/web/Dockerfile 2025-09-13 00:46:29,083 [ scc.git] DEBUG create mode 100644 idr/web/playbook.yml 2025-09-13 00:46:29,235 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:46:29,235 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6' 2025-09-13 00:46:29,240 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:46:29,243 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 76 (Run cli deps) bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6' 2025-09-13 00:46:29,253 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-13 00:46:29,256 [ scc.git] DEBUG docker | 1 + 2025-09-13 00:46:29,256 [ scc.git] DEBUG 1 file changed, 1 insertion(+) 2025-09-13 00:46:29,642 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:46:29,642 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-13 00:46:29,682 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:46:29,682 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:46:29,684 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-13 00:46:29,724 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-13 00:46:29,728 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb4040e5f50> has no local changes 2025-09-13 00:46:29,728 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: openmicroscopy/omero-test-infra Excluded PRs: - PR 75 marimeireles 'Microservices' (user: marimeireles) - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure) - PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles) Already up to date. Merged PRs: - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra' - PR 76 will-moore 'Run cli deps' Generated by OMERO-plugins-push#531 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/531/)' 2025-09-13 00:46:29,736 [ scc.git] DEBUG [detached HEAD fb4cd24] merge master -Dorg -Ssuccess-only 2025-09-13 00:46:29,736 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:46:29,736 [ scc.repo] DEBUG ## PRs found: 2025-09-13 00:46:30,158 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 None 2025-09-13 00:46:30,647 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/issues/14 HTTP/1.1" 200 None 2025-09-13 00:46:30,648 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-13 00:46:31,224 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None 2025-09-13 00:46:31,749 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:46:32,263 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-13 00:46:32,819 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None 2025-09-13 00:46:33,253 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/statuses/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?per_page=1 HTTP/1.1" 200 2 2025-09-13 00:46:33,253 [ scc.repo] DEBUG - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-13 00:46:33,253 [ scc.repo] DEBUG ## Branches found: 2025-09-13 00:46:33,253 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload 2025-09-13 00:46:33,253 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:46:33,253 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:46:33,256 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-13 00:46:33,259 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-13 00:46:33,259 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-13 00:46:33,261 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-13 00:46:33,264 [ scc.git] DEBUG Already up to date. 2025-09-13 00:46:33,265 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head' 2025-09-13 00:46:33,557 [ scc.git] DEBUG From https://github.com/ome/omero-upload 2025-09-13 00:46:33,557 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD 2025-09-13 00:46:33,562 [ scc.git] DEBUG ## Unique users: [] 2025-09-13 00:46:33,562 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:46:33,562 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:46:33,564 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1a4dbe9a31854f4f65c509ea929debf3319ba1ea' 2025-09-13 00:46:33,567 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:46:33,569 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 1a4dbe9a31854f4f65c509ea929debf3319ba1ea' 2025-09-13 00:46:33,577 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-13 00:46:33,580 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-09-13 00:46:33,580 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-09-13 00:46:33,718 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:46:33,719 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-13 00:46:33,760 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:46:33,760 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:46:33,762 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-13 00:46:33,801 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-13 00:46:33,805 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb40409f510> has no local changes 2025-09-13 00:46:33,805 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-upload Already up to date. Merged PRs: - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#531 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/531/)' 2025-09-13 00:46:33,811 [ scc.git] DEBUG [detached HEAD 3d90b12] merge master -Dorg -Ssuccess-only 2025-09-13 00:46:33,812 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:46:33,812 [ scc.repo] DEBUG ## PRs found: 2025-09-13 00:46:34,213 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 None 2025-09-13 00:46:34,675 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/issues/22 HTTP/1.1" 200 None 2025-09-13 00:46:34,675 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-13 00:46:35,193 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None 2025-09-13 00:46:35,700 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:46:36,192 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-13 00:46:36,801 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None 2025-09-13 00:46:37,224 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/statuses/2ee819462af52bf2878fadf06d6ebdbafb8f1902?per_page=1 HTTP/1.1" 200 2 2025-09-13 00:46:37,224 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-13 00:46:37,224 [ scc.repo] DEBUG ## Branches found: 2025-09-13 00:46:37,224 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope 2025-09-13 00:46:37,224 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:46:37,224 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:46:37,227 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-13 00:46:37,229 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-13 00:46:37,229 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-13 00:46:37,232 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-13 00:46:37,241 [ scc.git] DEBUG Updating deab817..160d894 2025-09-13 00:46:37,923 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None 2025-09-13 00:46:37,924 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head' 2025-09-13 00:46:38,207 [ scc.git] DEBUG From https://github.com/ome/omero-virtual-microscope 2025-09-13 00:46:38,207 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD 2025-09-13 00:46:38,211 [ scc.git] DEBUG ## Unique users: [] 2025-09-13 00:46:38,211 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:46:38,211 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:46:38,213 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee819462af52bf2878fadf06d6ebdbafb8f1902' 2025-09-13 00:46:38,217 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:46:38,219 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 2ee819462af52bf2878fadf06d6ebdbafb8f1902' 2025-09-13 00:46:38,227 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-13 00:46:38,230 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-09-13 00:46:38,230 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-09-13 00:46:38,385 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:46:38,385 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-13 00:46:38,426 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:46:38,426 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:46:38,428 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-13 00:46:38,467 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-13 00:46:38,470 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb4059f8810> has no local changes 2025-09-13 00:46:38,470 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-virtual-microscope Updating deab817..160d894 Previously merged: - PR 20 jburel 'Build' Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#531 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/531/)' 2025-09-13 00:46:38,477 [ scc.git] DEBUG [detached HEAD 89f0424] merge master -Dorg -Ssuccess-only 2025-09-13 00:46:38,477 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:46:38,477 [ scc.git] INFO Overriding base-branch from master to main 2025-09-13 00:46:38,477 [ scc.repo] DEBUG ## PRs found: 2025-09-13 00:46:38,937 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None 2025-09-13 00:46:39,374 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None 2025-09-13 00:46:39,840 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21/comments HTTP/1.1" 200 None 2025-09-13 00:46:40,369 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None 2025-09-13 00:46:40,865 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:46:41,503 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-13 00:46:42,026 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None 2025-09-13 00:46:42,423 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/d07067753650282c9e8cdbbeae37897b7ed0d4cc?per_page=1 HTTP/1.1" 200 2 2025-09-13 00:46:42,423 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import' 2025-09-13 00:46:42,900 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None 2025-09-13 00:46:43,387 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None 2025-09-13 00:46:43,833 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None 2025-09-13 00:46:44,388 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None 2025-09-13 00:46:44,813 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:46:45,240 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None 2025-09-13 00:46:45,692 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2 2025-09-13 00:46:45,693 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' 2025-09-13 00:46:45,693 [ scc.repo] DEBUG ## Branches found: 2025-09-13 00:46:45,693 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr 2025-09-13 00:46:45,693 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:46:45,693 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:46:45,696 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main' 2025-09-13 00:46:45,698 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-13 00:46:45,698 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main' 2025-09-13 00:46:45,701 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main' 2025-09-13 00:46:45,709 [ scc.git] DEBUG Updating 8f3c313..00e0207 2025-09-13 00:46:46,322 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/20 HTTP/1.1" 200 None 2025-09-13 00:46:46,323 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head' 2025-09-13 00:46:46,611 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr 2025-09-13 00:46:46,611 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD 2025-09-13 00:46:46,615 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head' 2025-09-13 00:46:46,900 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr 2025-09-13 00:46:46,900 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD 2025-09-13 00:46:46,904 [ scc.git] DEBUG ## Unique users: [] 2025-09-13 00:46:46,904 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:46:46,905 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:46:46,907 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8' 2025-09-13 00:46:46,910 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:46:46,912 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8' 2025-09-13 00:46:46,922 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py 2025-09-13 00:46:46,922 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py 2025-09-13 00:46:46,922 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py 2025-09-13 00:46:46,923 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-09-13 00:46:46,923 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-09-13 00:46:46,926 [ scc.git] DEBUG Calling 'git reset --hard 00e02072dc29b04eba14c080ca8a0175a1499c15' 2025-09-13 00:46:46,931 [ scc.git] DEBUG HEAD is now at 00e0207 Merge pull request #20 from will-moore/zarr_python_v3 2025-09-13 00:46:47,065 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:46:47,066 [ scc.git] DEBUG Calling 'git merge-base 00e02072dc29b04eba14c080ca8a0175a1499c15 85cf4c893f393da6763bf4cee2a308832a41a9e8' 2025-09-13 00:46:47,069 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..00e02072dc29b04eba14c080ca8a0175a1499c15' 2025-09-13 00:46:47,072 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' Conflicting PR. Removed from build [OMERO-plugins-push#531](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/531/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/531/consoleText) for more details. Possible conflicts: - Upstream changes - omero_web_zarr/urls.py --conflicts 2025-09-13 00:46:47,074 [ scc.config] DEBUG Found github.token 2025-09-13 00:46:47,074 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts. 2025-09-13 00:46:47,074 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d07067753650282c9e8cdbbeae37897b7ed0d4cc' 2025-09-13 00:46:47,077 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:46:47,080 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) d07067753650282c9e8cdbbeae37897b7ed0d4cc' 2025-09-13 00:46:47,088 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py 2025-09-13 00:46:47,089 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-13 00:46:47,093 [ scc.git] DEBUG README.rst | 3 + 2025-09-13 00:46:47,093 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++ 2025-09-13 00:46:47,093 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 + 2025-09-13 00:46:47,093 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++- 2025-09-13 00:46:47,093 [ scc.git] DEBUG setup.py | 5 +- 2025-09-13 00:46:47,093 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-) 2025-09-13 00:46:47,093 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html 2025-09-13 00:46:47,451 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:46:47,452 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-13 00:46:47,492 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:46:47,492 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:46:47,494 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-13 00:46:47,533 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-13 00:46:47,537 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb404076690> has no local changes 2025-09-13 00:46:47,537 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-web-zarr Excluded PRs: - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft) Updating 8f3c313..00e0207 Previously merged: - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints' Merged PRs: - PR 21 will-moore 'Web zarr import' Conflicting PRs (not included): - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' Generated by OMERO-plugins-push#531 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/531/)' 2025-09-13 00:46:47,544 [ scc.git] DEBUG [detached HEAD efddad1] merge master -Dorg -Ssuccess-only 2025-09-13 00:46:47,544 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:46:47,544 [ scc.repo] DEBUG ## PRs found: 2025-09-13 00:46:47,924 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 None 2025-09-13 00:46:48,422 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/issues/25 HTTP/1.1" 200 None 2025-09-13 00:46:48,423 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-13 00:46:48,981 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None 2025-09-13 00:46:49,518 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:46:50,007 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-13 00:46:50,585 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None 2025-09-13 00:46:51,032 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/statuses/c73bedb717b9ecce0af666245d3486aa5a2dafe9?per_page=1 HTTP/1.1" 200 2 2025-09-13 00:46:51,033 [ scc.repo] DEBUG - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-13 00:46:51,033 [ scc.repo] DEBUG ## Branches found: 2025-09-13 00:46:51,033 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror 2025-09-13 00:46:51,033 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:46:51,033 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:46:51,036 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-13 00:46:51,038 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-13 00:46:51,038 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-13 00:46:51,042 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-13 00:46:51,045 [ scc.git] DEBUG Already up to date. 2025-09-13 00:46:51,045 [ scc.git] DEBUG Calling 'git fetch origin pull/25/head' 2025-09-13 00:46:51,352 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-weberror 2025-09-13 00:46:51,352 [ scc.git] DEBUG * branch refs/pull/25/head -> FETCH_HEAD 2025-09-13 00:46:51,356 [ scc.git] DEBUG ## Unique users: [] 2025-09-13 00:46:51,356 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:46:51,356 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:46:51,359 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c73bedb717b9ecce0af666245d3486aa5a2dafe9' 2025-09-13 00:46:51,362 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:46:51,364 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) c73bedb717b9ecce0af666245d3486aa5a2dafe9' 2025-09-13 00:46:51,372 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-13 00:46:51,374 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-09-13 00:46:51,375 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-09-13 00:46:51,525 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:46:51,526 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-13 00:46:51,566 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:46:51,566 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:46:51,568 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-13 00:46:51,607 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-13 00:46:51,610 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb404132390> has no local changes 2025-09-13 00:46:51,610 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: openmicroscopy/omero-weberror Already up to date. Merged PRs: - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#531 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/531/)' 2025-09-13 00:46:51,617 [ scc.git] DEBUG [detached HEAD c114eb7] merge master -Dorg -Ssuccess-only 2025-09-13 00:46:51,617 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:46:51,617 [ scc.repo] DEBUG ## PRs found: 2025-09-13 00:46:51,995 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 None 2025-09-13 00:46:52,467 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/issues/37 HTTP/1.1" 200 None 2025-09-13 00:46:52,467 [ scc.repo] DEBUG # ... Include label: dependencies 2025-09-13 00:46:53,048 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None 2025-09-13 00:46:53,538 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:46:53,994 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-13 00:46:54,611 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None 2025-09-13 00:46:55,057 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/statuses/8cf5f7e65ae8e945b134e41e77bc13a785aff478?per_page=1 HTTP/1.1" 200 2 2025-09-13 00:46:55,057 [ scc.repo] DEBUG - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-13 00:46:55,057 [ scc.repo] DEBUG ## Branches found: 2025-09-13 00:46:55,057 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest 2025-09-13 00:46:55,058 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:46:55,058 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:46:55,060 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-13 00:46:55,063 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-13 00:46:55,063 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-13 00:46:55,066 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-13 00:46:55,069 [ scc.git] DEBUG Already up to date. 2025-09-13 00:46:55,069 [ scc.git] DEBUG Calling 'git fetch origin pull/37/head' 2025-09-13 00:46:55,365 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-webtest 2025-09-13 00:46:55,365 [ scc.git] DEBUG * branch refs/pull/37/head -> FETCH_HEAD 2025-09-13 00:46:55,370 [ scc.git] DEBUG ## Unique users: [] 2025-09-13 00:46:55,370 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:46:55,370 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:46:55,372 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8cf5f7e65ae8e945b134e41e77bc13a785aff478' 2025-09-13 00:46:55,375 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:46:55,378 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 37 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8cf5f7e65ae8e945b134e41e77bc13a785aff478' 2025-09-13 00:46:55,385 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-13 00:46:55,388 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-09-13 00:46:55,388 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-09-13 00:46:55,554 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:46:55,555 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-13 00:46:55,597 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:46:55,597 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:46:55,600 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-13 00:46:55,641 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-13 00:46:55,645 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb40412e2d0> has no local changes 2025-09-13 00:46:55,645 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: openmicroscopy/omero-webtest Already up to date. Merged PRs: - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#531 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/531/)' 2025-09-13 00:46:55,651 [ scc.git] DEBUG [detached HEAD dd750fa] merge master -Dorg -Ssuccess-only 2025-09-13 00:46:55,651 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:46:55,651 [ scc.repo] DEBUG ## PRs found: 2025-09-13 00:46:56,121 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 None 2025-09-13 00:46:56,592 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100 HTTP/1.1" 200 None 2025-09-13 00:46:57,037 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100/comments HTTP/1.1" 200 None 2025-09-13 00:46:57,574 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None 2025-09-13 00:46:58,038 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:46:58,564 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None 2025-09-13 00:46:58,990 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/statuses/b4abacf0cb9b7aee150761d320bdbb80762cd6e7?per_page=1 HTTP/1.1" 200 2 2025-09-13 00:46:58,991 [ scc.repo] DEBUG - PR 100 dominikl 'Run tests properly' 2025-09-13 00:46:58,991 [ scc.repo] DEBUG ## Branches found: 2025-09-13 00:46:58,991 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway 2025-09-13 00:46:58,991 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:46:58,991 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:46:58,994 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-09-13 00:46:58,996 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-13 00:46:58,996 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-09-13 00:46:58,999 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-09-13 00:46:59,002 [ scc.git] DEBUG Already up to date. 2025-09-13 00:46:59,002 [ scc.git] DEBUG Calling 'git fetch origin pull/100/head' 2025-09-13 00:46:59,284 [ scc.git] DEBUG From https://github.com/ome/rOMERO-gateway 2025-09-13 00:46:59,284 [ scc.git] DEBUG * branch refs/pull/100/head -> FETCH_HEAD 2025-09-13 00:46:59,288 [ scc.git] DEBUG ## Unique users: [] 2025-09-13 00:46:59,288 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:46:59,288 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:46:59,291 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b4abacf0cb9b7aee150761d320bdbb80762cd6e7' 2025-09-13 00:46:59,294 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:46:59,296 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 100 (Run tests properly) b4abacf0cb9b7aee150761d320bdbb80762cd6e7' 2025-09-13 00:46:59,305 [ scc.git] DEBUG Auto-merging Dockerfile 2025-09-13 00:46:59,305 [ scc.git] DEBUG CONFLICT (content): Merge conflict in Dockerfile 2025-09-13 00:46:59,305 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-09-13 00:46:59,305 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-09-13 00:46:59,308 [ scc.git] DEBUG Calling 'git reset --hard 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9' 2025-09-13 00:46:59,313 [ scc.git] DEBUG HEAD is now at 7b5d64d Merge pull request #106 from dominikl/add_examples_2 2025-09-13 00:46:59,457 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:46:59,457 [ scc.git] DEBUG Calling 'git merge-base 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 b4abacf0cb9b7aee150761d320bdbb80762cd6e7' 2025-09-13 00:46:59,460 [ scc.git] DEBUG Calling 'git diff --name-only 8b424d2d21f70d07729c4da38a9241b9a9f483be..7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9' 2025-09-13 00:46:59,463 [ scc.git] INFO - PR 100 dominikl 'Run tests properly' Conflicting PR. Removed from build [OMERO-plugins-push#531](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/531/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/531/consoleText) for more details. Possible conflicts: - Upstream changes - Dockerfile --conflicts 2025-09-13 00:46:59,465 [ scc.config] DEBUG Found github.token 2025-09-13 00:46:59,465 [ scc.git] DEBUG Not adding comment to issue #100, already --conflicts. 2025-09-13 00:46:59,465 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-13 00:46:59,504 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:46:59,505 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:46:59,507 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-13 00:46:59,546 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-13 00:46:59,550 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb40411add0> has no local changes 2025-09-13 00:46:59,550 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/rOMERO-gateway Already up to date. Conflicting PRs (not included): - PR 100 dominikl 'Run tests properly' Generated by OMERO-plugins-push#531 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/531/)' 2025-09-13 00:46:59,556 [ scc.git] DEBUG [detached HEAD a9a79c0] merge master -Dorg -Ssuccess-only 2025-09-13 00:46:59,557 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:46:59,557 [ scc.git] INFO Overriding base-branch from master to develop 2025-09-13 00:46:59,557 [ scc.repo] DEBUG ## PRs found: 2025-09-13 00:47:00,050 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None 2025-09-13 00:47:00,499 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223 HTTP/1.1" 200 None 2025-09-13 00:47:00,986 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223/comments HTTP/1.1" 200 None 2025-09-13 00:47:01,476 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None 2025-09-13 00:47:01,961 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:47:02,428 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-09-13 00:47:02,859 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None 2025-09-13 00:47:03,300 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/d8b2bbd6f5066de883a41ba5338662d60472b0d8?per_page=1 HTTP/1.1" 200 2 2025-09-13 00:47:03,301 [ scc.repo] DEBUG - PR 223 will-moore 'don't attempt ROI stats on big images' 2025-09-13 00:47:03,914 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202 HTTP/1.1" 200 None 2025-09-13 00:47:04,367 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202/comments HTTP/1.1" 200 None 2025-09-13 00:47:04,833 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None 2025-09-13 00:47:05,280 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-09-13 00:47:05,799 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None 2025-09-13 00:47:06,211 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/1fd6030669613cdb8879cfe6395db8c820fdcf19?per_page=1 HTTP/1.1" 200 2 2025-09-13 00:47:06,212 [ scc.repo] DEBUG - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py' 2025-09-13 00:47:06,699 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None 2025-09-13 00:47:07,233 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None 2025-09-13 00:47:07,734 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103 HTTP/1.1" 200 None 2025-09-13 00:47:08,212 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103/comments HTTP/1.1" 200 None 2025-09-13 00:47:08,214 [ scc.repo] DEBUG ## Branches found: 2025-09-13 00:47:08,214 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts 2025-09-13 00:47:08,214 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:47:08,214 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:47:08,217 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop' 2025-09-13 00:47:08,219 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-09-13 00:47:08,219 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop' 2025-09-13 00:47:08,223 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop' 2025-09-13 00:47:08,234 [ scc.git] DEBUG Updating 4b4c755..03b9116 2025-09-13 00:47:08,927 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/228 HTTP/1.1" 200 None 2025-09-13 00:47:09,638 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None 2025-09-13 00:47:10,298 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None 2025-09-13 00:47:10,299 [ scc.git] DEBUG Calling 'git fetch origin pull/202/head' 2025-09-13 00:47:10,607 [ scc.git] DEBUG From https://github.com/ome/scripts 2025-09-13 00:47:10,607 [ scc.git] DEBUG * branch refs/pull/202/head -> FETCH_HEAD 2025-09-13 00:47:10,612 [ scc.git] DEBUG Calling 'git fetch origin pull/223/head' 2025-09-13 00:47:10,900 [ scc.git] DEBUG From https://github.com/ome/scripts 2025-09-13 00:47:10,900 [ scc.git] DEBUG * branch refs/pull/223/head -> FETCH_HEAD 2025-09-13 00:47:10,905 [ scc.git] DEBUG ## Unique users: [] 2025-09-13 00:47:10,905 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:47:10,905 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:47:10,907 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1fd6030669613cdb8879cfe6395db8c820fdcf19' 2025-09-13 00:47:10,913 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:47:10,915 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 202 (Add Plate support to KeyVal_to_csv.py) 1fd6030669613cdb8879cfe6395db8c820fdcf19' 2025-09-13 00:47:10,926 [ scc.git] DEBUG CONFLICT (modify/delete): omero/annotation_scripts/KeyVal_to_csv.py deleted in HEAD and modified in 1fd6030669613cdb8879cfe6395db8c820fdcf19. Version 1fd6030669613cdb8879cfe6395db8c820fdcf19 of omero/annotation_scripts/KeyVal_to_csv.py left in tree. 2025-09-13 00:47:10,927 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-09-13 00:47:10,927 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-09-13 00:47:10,930 [ scc.git] DEBUG Calling 'git reset --hard 03b9116196e1a799dd18a666559613d912be01a5' 2025-09-13 00:47:10,934 [ scc.git] DEBUG HEAD is now at 03b9116 Merge pull request #228 from ome/dependabot/github_actions/dot-github/workflows/pypa/gh-action-pypi-publish-1.13.0 2025-09-13 00:47:11,075 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:47:11,075 [ scc.git] DEBUG Calling 'git merge-base 03b9116196e1a799dd18a666559613d912be01a5 1fd6030669613cdb8879cfe6395db8c820fdcf19' 2025-09-13 00:47:11,081 [ scc.git] DEBUG Calling 'git diff --name-only a90f59802f6752ad74badec5c0c1d6b0c9c43b15..03b9116196e1a799dd18a666559613d912be01a5' 2025-09-13 00:47:11,085 [ scc.git] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py' Conflicting PR. Removed from build [OMERO-plugins-push#531](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/531/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/531/consoleText) for more details. Possible conflicts: - Upstream changes - omero/annotation_scripts/KeyVal_to_csv.py --conflicts 2025-09-13 00:47:11,087 [ scc.config] DEBUG Found github.token 2025-09-13 00:47:11,087 [ scc.git] DEBUG Not adding comment to issue #202, already --conflicts. 2025-09-13 00:47:11,087 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d8b2bbd6f5066de883a41ba5338662d60472b0d8' 2025-09-13 00:47:11,092 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:47:11,094 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 223 (don't attempt ROI stats on big images) d8b2bbd6f5066de883a41ba5338662d60472b0d8' 2025-09-13 00:47:11,105 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-09-13 00:47:11,108 [ scc.git] DEBUG omero/export_scripts/Batch_ROI_Export.py | 9 ++++++++- 2025-09-13 00:47:11,108 [ scc.git] DEBUG 1 file changed, 8 insertions(+), 1 deletion(-) 2025-09-13 00:47:11,487 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:47:11,488 [ scc.git] DEBUG Calling 'git submodule update' 2025-09-13 00:47:11,528 [ scc.git] DEBUG Get sha1 of %s 2025-09-13 00:47:11,528 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-09-13 00:47:11,530 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-13 00:47:11,568 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-13 00:47:11,572 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb3f470cb10> has no local changes 2025-09-13 00:47:11,572 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/scripts Excluded PRs: - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn) - PR 103 joshmoore 'Script for calculating min/max' (exclude comment) Updating 4b4c755..03b9116 Previously merged: - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows' - PR 227 jburel 'Replace tostring by tobytes' - PR 225 will-moore 'Fix param names and assertion texts in tests' Merged PRs: - PR 223 will-moore 'don't attempt ROI stats on big images' Conflicting PRs (not included): - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py' Generated by OMERO-plugins-push#531 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/531/)' 2025-09-13 00:47:11,579 [ scc.git] DEBUG [detached HEAD 99a57e8] merge master -Dorg -Ssuccess-only 2025-09-13 00:47:11,579 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:47:11,580 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-09-13 00:47:11,660 [ scc.config] DEBUG Found submodule.minimal-omero-client.url 2025-09-13 00:47:11,882 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:47:11,887 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch 2025-09-13 00:47:11,889 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url 2025-09-13 00:47:12,300 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:47:12,305 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch 2025-09-13 00:47:12,307 [ scc.config] DEBUG Found submodule.omero-cli-render.url 2025-09-13 00:47:12,726 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:47:12,731 [ scc.config] DEBUG Found submodule.omero-cli-render.branch 2025-09-13 00:47:12,733 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url 2025-09-13 00:47:13,121 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:47:13,128 [ scc.config] DEBUG Found submodule.omero-figure.url 2025-09-13 00:47:13,517 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:47:13,521 [ scc.config] DEBUG Found submodule.omero-figure.branch 2025-09-13 00:47:13,523 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url 2025-09-13 00:47:13,908 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:47:13,913 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch 2025-09-13 00:47:13,915 [ scc.config] DEBUG Found submodule.omero-gallery.url 2025-09-13 00:47:14,298 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:47:14,303 [ scc.config] DEBUG Found submodule.omero-gallery.branch 2025-09-13 00:47:14,305 [ scc.config] DEBUG Found submodule.omero-iviewer.url 2025-09-13 00:47:14,709 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:47:14,713 [ scc.config] DEBUG Found submodule.omero-iviewer.branch 2025-09-13 00:47:14,715 [ scc.config] DEBUG Found submodule.omero-mapr.url 2025-09-13 00:47:15,099 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:47:15,104 [ scc.config] DEBUG Found submodule.omero-mapr.branch 2025-09-13 00:47:15,106 [ scc.config] DEBUG Found submodule.omero-metadata.url 2025-09-13 00:47:15,489 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:47:15,494 [ scc.config] DEBUG Found submodule.omero-metadata.branch 2025-09-13 00:47:15,496 [ scc.config] DEBUG Found submodule.omero-parade.url 2025-09-13 00:47:15,878 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:47:15,883 [ scc.config] DEBUG Found submodule.omero-parade.branch 2025-09-13 00:47:15,886 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url 2025-09-13 00:47:16,272 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:47:16,277 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch 2025-09-13 00:47:16,279 [ scc.config] DEBUG Found submodule.omero-rois.url 2025-09-13 00:47:16,661 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:47:16,668 [ scc.config] DEBUG Found submodule.omero-signup.url 2025-09-13 00:47:17,055 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:47:17,062 [ scc.config] DEBUG Found submodule.omero-test-infra.url 2025-09-13 00:47:17,508 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:47:17,512 [ scc.config] DEBUG Found submodule.omero-test-infra.branch 2025-09-13 00:47:17,514 [ scc.config] DEBUG Found submodule.omero-upload.url 2025-09-13 00:47:17,896 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:47:17,904 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url 2025-09-13 00:47:18,296 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:47:18,303 [ scc.config] DEBUG Found submodule.omero-web-zarr.url 2025-09-13 00:47:18,682 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:47:18,688 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch 2025-09-13 00:47:18,690 [ scc.config] DEBUG Found submodule.omero-weberror.url 2025-09-13 00:47:19,070 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:47:19,076 [ scc.config] DEBUG Found submodule.omero-weberror.branch 2025-09-13 00:47:19,078 [ scc.config] DEBUG Found submodule.omero-webtest.url 2025-09-13 00:47:19,454 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:47:19,459 [ scc.config] DEBUG Found submodule.omero-webtest.branch 2025-09-13 00:47:19,461 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url 2025-09-13 00:47:19,848 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:47:19,853 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch 2025-09-13 00:47:19,855 [ scc.config] DEBUG Found submodule.scripts.url 2025-09-13 00:47:20,241 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-09-13 00:47:20,246 [ scc.config] DEBUG Found submodule.scripts.branch 2025-09-13 00:47:20,246 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-09-13 00:47:20,338 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fb4082ea210> has local changes 2025-09-13 00:47:20,339 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-plugins Already up to date. Merged PRs: - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' Repository: ome/minimal-omero-client Already up to date. Repository: ome/omero-cli-duplicate Excluded PRs: - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment) Already up to date. Merged PRs: - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-cli-render Excluded PRs: - PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft) - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft) Already up to date. Merged PRs: - PR 59 will-moore 'Apply settings to Plate' - PR 69 dominikl 'Fix help text for impo/export commands' - PR 71 dominikl 'Escape slash character in image names' - PR 73 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-cli-zarr Excluded PRs: - PR 174 will-moore 'Skip wells' (stage: draft) - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (exclude comment) - PR 170 will-moore 'Use ome zarr models py' (stage: draft) - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft) - PR 167 dominikl 'Add extinfo command' (stage: draft) - PR 166 will-moore 'Downsample scale option' (stage: draft) - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment) Updating 11d3587..f7eea7c Previously merged: - PR 179 will-moore 'Changelog 0.6.0' - PR 177 jburel 'Replace fromstring by frombuffer' - PR 175 will-moore 'Pin ome-zarr-py <0.12.0' - PR 147 will-moore 'Name option' - PR 173 will-moore 'Add test_export_plate_polygons()' - PR 171 will-moore 'Initial addition of integration tests' - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' - PR 180 will-moore 'Register command' Repository: ome/omero-figure Excluded PRs: - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier) - PR 619 will-moore 'OME-Zarr support' (stage: draft) - PR 543 will-moore 'Plate well labels' (exclude comment) Updating 9cc36cde..66607c99 Previously merged: - PR 605 Tom-TBT 'Colorbar feature' - PR 638 Rdornier 'Fix arrow opacity' - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4' - PR 635 dependabot[bot] 'Bump esbuild and vite' - PR 623 will-moore 'Fix wrapping of label X button. see issues/622' - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 600 Rdornier 'Label on rois' - PR 610 will-moore 'Add docs/contributing.rst' - PR 612 will-moore 'Script version' - PR 616 Rdornier 'Fix labels around border' Conflicting PRs (not included): - PR 630 will-moore 'Fix color and position for ALL new panel insets' - PR 637 Rdornier 'Fix scalebar position' - PR 642 dependabot[bot] 'Bump vite from 6.2.6 to 6.3.6' Repository: ome/omero-fpbioimage Already up to date. Merged PRs: - PR 18 jburel 'default size z value' - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-gallery Already up to date. Merged PRs: - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - PR 114 dependabot[bot] 'Bump tar and fsevents' - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' Conflicting PRs (not included): - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' Repository: ome/omero-iviewer Excluded PRs: - PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft) - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft) - PR 420 will-moore 'Add release process to README' (exclude comment) - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment) - PR 227 will-moore 'Vectortile investigation' (status: failure) Updating 7a798ce..bb94cf8 Previously merged: - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 460 will-moore 'Channel min spinner fix' - PR 465 will-moore 'Save as Figure' - PR 471 will-moore 'Z projection disabled tooltip' - PR 499 dependabot[bot] 'Bump nanoid and mocha' Conflicting PRs (not included): - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha' Repository: ome/omero-mapr Excluded PRs: - PR 79 will-moore 'Right panel title' (exclude comment) Already up to date. Merged PRs: - PR 74 will-moore 'mapr extension of webclient' - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Conflicting PRs (not included): - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-metadata Updating 3cd120c..55060a2 Previously merged: - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Conflicting PRs (not included): - PR 55 kkoz 'Prevent users from creating columns with python keyword names' - PR 64 will-moore 'Support images_by_name for Screen and Plate' Repository: ome/omero-parade Excluded PRs: - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft) - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment) - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment) - PR 39 chris-allan 'Expand all for Screens' (exclude comment) Already up to date. Merged PRs: - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Repository: ome/omero-prometheus-tools Already up to date. Merged PRs: - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-rois Excluded PRs: - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) Already up to date. Merged PRs: - PR 33 jo-mueller 'Add roi to array functions' - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-signup Already up to date. Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Conflicting PRs (not included): - PR 14 manics 'Add pre-commit (black, flake8)' Repository: openmicroscopy/omero-test-infra Excluded PRs: - PR 75 marimeireles 'Microservices' (user: marimeireles) - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure) - PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles) Already up to date. Merged PRs: - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra' - PR 76 will-moore 'Run cli deps' Repository: ome/omero-upload Already up to date. Merged PRs: - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-virtual-microscope Updating deab817..160d894 Previously merged: - PR 20 jburel 'Build' Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-web-zarr Excluded PRs: - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft) Updating 8f3c313..00e0207 Previously merged: - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints' Merged PRs: - PR 21 will-moore 'Web zarr import' Conflicting PRs (not included): - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' Repository: openmicroscopy/omero-weberror Already up to date. Merged PRs: - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: openmicroscopy/omero-webtest Already up to date. Merged PRs: - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/rOMERO-gateway Already up to date. Conflicting PRs (not included): - PR 100 dominikl 'Run tests properly' Repository: ome/scripts Excluded PRs: - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn) - PR 103 joshmoore 'Script for calculating min/max' (exclude comment) Updating 4b4c755..03b9116 Previously merged: - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows' - PR 227 jburel 'Replace tostring by tobytes' - PR 225 will-moore 'Fix param names and assertion texts in tests' Merged PRs: - PR 223 will-moore 'don't attempt ROI stats on big images' Conflicting PRs (not included): - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py' Generated by OMERO-plugins-push#531 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/531/)' 2025-09-13 00:47:20,356 [ scc.git] DEBUG [detached HEAD 3897d81] merge master -Dorg -Ssuccess-only 2025-09-13 00:47:20,356 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-) 2025-09-13 00:47:20,356 [ scc.merge] INFO Repository: ome/omero-plugins 2025-09-13 00:47:20,356 [ scc.merge] INFO Already up to date. 2025-09-13 00:47:20,356 [ scc.merge] INFO 2025-09-13 00:47:20,356 [ scc.merge] INFO Merged PRs: 2025-09-13 00:47:20,356 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2025-09-13 00:47:20,356 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2025-09-13 00:47:20,356 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2025-09-13 00:47:20,356 [ scc.merge] INFO 2025-09-13 00:47:20,356 [ scc.merge] INFO Repository: ome/minimal-omero-client 2025-09-13 00:47:20,356 [ scc.merge] INFO Already up to date. 2025-09-13 00:47:20,356 [ scc.merge] INFO 2025-09-13 00:47:20,356 [ scc.merge] INFO 2025-09-13 00:47:20,356 [ scc.merge] INFO Repository: ome/omero-cli-duplicate 2025-09-13 00:47:20,356 [ scc.merge] INFO Excluded PRs: 2025-09-13 00:47:20,356 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment) 2025-09-13 00:47:20,356 [ scc.merge] INFO Already up to date. 2025-09-13 00:47:20,357 [ scc.merge] INFO 2025-09-13 00:47:20,357 [ scc.merge] INFO Merged PRs: 2025-09-13 00:47:20,357 [ scc.merge] INFO - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-13 00:47:20,357 [ scc.merge] INFO 2025-09-13 00:47:20,357 [ scc.merge] INFO Repository: ome/omero-cli-render 2025-09-13 00:47:20,357 [ scc.merge] INFO Excluded PRs: 2025-09-13 00:47:20,357 [ scc.merge] INFO - PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft) 2025-09-13 00:47:20,357 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft) 2025-09-13 00:47:20,357 [ scc.merge] INFO Already up to date. 2025-09-13 00:47:20,357 [ scc.merge] INFO 2025-09-13 00:47:20,357 [ scc.merge] INFO Merged PRs: 2025-09-13 00:47:20,357 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate' 2025-09-13 00:47:20,357 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands' 2025-09-13 00:47:20,357 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names' 2025-09-13 00:47:20,357 [ scc.merge] INFO - PR 73 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-13 00:47:20,357 [ scc.merge] INFO 2025-09-13 00:47:20,357 [ scc.merge] INFO Repository: ome/omero-cli-zarr 2025-09-13 00:47:20,357 [ scc.merge] INFO Excluded PRs: 2025-09-13 00:47:20,357 [ scc.merge] INFO - PR 174 will-moore 'Skip wells' (stage: draft) 2025-09-13 00:47:20,357 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' (exclude comment) 2025-09-13 00:47:20,357 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft) 2025-09-13 00:47:20,357 [ scc.merge] INFO - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft) 2025-09-13 00:47:20,357 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft) 2025-09-13 00:47:20,357 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft) 2025-09-13 00:47:20,357 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) 2025-09-13 00:47:20,357 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment) 2025-09-13 00:47:20,357 [ scc.merge] INFO Updating 11d3587..f7eea7c 2025-09-13 00:47:20,357 [ scc.merge] INFO Previously merged: 2025-09-13 00:47:20,357 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0' 2025-09-13 00:47:20,357 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer' 2025-09-13 00:47:20,357 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0' 2025-09-13 00:47:20,357 [ scc.merge] INFO - PR 147 will-moore 'Name option' 2025-09-13 00:47:20,357 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()' 2025-09-13 00:47:20,357 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests' 2025-09-13 00:47:20,357 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2025-09-13 00:47:20,357 [ scc.merge] INFO 2025-09-13 00:47:20,357 [ scc.merge] INFO Merged PRs: 2025-09-13 00:47:20,358 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' 2025-09-13 00:47:20,358 [ scc.merge] INFO - PR 180 will-moore 'Register command' 2025-09-13 00:47:20,358 [ scc.merge] INFO 2025-09-13 00:47:20,358 [ scc.merge] INFO Repository: ome/omero-figure 2025-09-13 00:47:20,358 [ scc.merge] INFO Excluded PRs: 2025-09-13 00:47:20,358 [ scc.merge] INFO - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier) 2025-09-13 00:47:20,358 [ scc.merge] INFO - PR 619 will-moore 'OME-Zarr support' (stage: draft) 2025-09-13 00:47:20,358 [ scc.merge] INFO - PR 543 will-moore 'Plate well labels' (exclude comment) 2025-09-13 00:47:20,358 [ scc.merge] INFO Updating 9cc36cde..66607c99 2025-09-13 00:47:20,358 [ scc.merge] INFO Previously merged: 2025-09-13 00:47:20,358 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature' 2025-09-13 00:47:20,358 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity' 2025-09-13 00:47:20,358 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4' 2025-09-13 00:47:20,358 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite' 2025-09-13 00:47:20,358 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622' 2025-09-13 00:47:20,358 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2025-09-13 00:47:20,358 [ scc.merge] INFO 2025-09-13 00:47:20,358 [ scc.merge] INFO Merged PRs: 2025-09-13 00:47:20,358 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois' 2025-09-13 00:47:20,358 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst' 2025-09-13 00:47:20,358 [ scc.merge] INFO - PR 612 will-moore 'Script version' 2025-09-13 00:47:20,358 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border' 2025-09-13 00:47:20,358 [ scc.merge] INFO 2025-09-13 00:47:20,358 [ scc.merge] INFO Conflicting PRs (not included): 2025-09-13 00:47:20,358 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets' 2025-09-13 00:47:20,358 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position' 2025-09-13 00:47:20,358 [ scc.merge] INFO - PR 642 dependabot[bot] 'Bump vite from 6.2.6 to 6.3.6' 2025-09-13 00:47:20,358 [ scc.merge] INFO 2025-09-13 00:47:20,358 [ scc.merge] INFO Repository: ome/omero-fpbioimage 2025-09-13 00:47:20,358 [ scc.merge] INFO Already up to date. 2025-09-13 00:47:20,358 [ scc.merge] INFO 2025-09-13 00:47:20,358 [ scc.merge] INFO Merged PRs: 2025-09-13 00:47:20,358 [ scc.merge] INFO - PR 18 jburel 'default size z value' 2025-09-13 00:47:20,358 [ scc.merge] INFO - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-13 00:47:20,358 [ scc.merge] INFO 2025-09-13 00:47:20,358 [ scc.merge] INFO Repository: ome/omero-gallery 2025-09-13 00:47:20,358 [ scc.merge] INFO Already up to date. 2025-09-13 00:47:20,358 [ scc.merge] INFO 2025-09-13 00:47:20,358 [ scc.merge] INFO Merged PRs: 2025-09-13 00:47:20,359 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' 2025-09-13 00:47:20,359 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents' 2025-09-13 00:47:20,359 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' 2025-09-13 00:47:20,359 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' 2025-09-13 00:47:20,359 [ scc.merge] INFO 2025-09-13 00:47:20,359 [ scc.merge] INFO Conflicting PRs (not included): 2025-09-13 00:47:20,359 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' 2025-09-13 00:47:20,359 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' 2025-09-13 00:47:20,359 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' 2025-09-13 00:47:20,359 [ scc.merge] INFO 2025-09-13 00:47:20,359 [ scc.merge] INFO Repository: ome/omero-iviewer 2025-09-13 00:47:20,359 [ scc.merge] INFO Excluded PRs: 2025-09-13 00:47:20,359 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft) 2025-09-13 00:47:20,359 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft) 2025-09-13 00:47:20,359 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment) 2025-09-13 00:47:20,359 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment) 2025-09-13 00:47:20,359 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure) 2025-09-13 00:47:20,359 [ scc.merge] INFO Updating 7a798ce..bb94cf8 2025-09-13 00:47:20,359 [ scc.merge] INFO Previously merged: 2025-09-13 00:47:20,359 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2025-09-13 00:47:20,359 [ scc.merge] INFO 2025-09-13 00:47:20,359 [ scc.merge] INFO Merged PRs: 2025-09-13 00:47:20,359 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix' 2025-09-13 00:47:20,359 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure' 2025-09-13 00:47:20,359 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip' 2025-09-13 00:47:20,359 [ scc.merge] INFO - PR 499 dependabot[bot] 'Bump nanoid and mocha' 2025-09-13 00:47:20,359 [ scc.merge] INFO 2025-09-13 00:47:20,359 [ scc.merge] INFO Conflicting PRs (not included): 2025-09-13 00:47:20,359 [ scc.merge] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha' 2025-09-13 00:47:20,359 [ scc.merge] INFO 2025-09-13 00:47:20,359 [ scc.merge] INFO Repository: ome/omero-mapr 2025-09-13 00:47:20,359 [ scc.merge] INFO Excluded PRs: 2025-09-13 00:47:20,359 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment) 2025-09-13 00:47:20,359 [ scc.merge] INFO Already up to date. 2025-09-13 00:47:20,359 [ scc.merge] INFO 2025-09-13 00:47:20,359 [ scc.merge] INFO Merged PRs: 2025-09-13 00:47:20,359 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient' 2025-09-13 00:47:20,359 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2025-09-13 00:47:20,359 [ scc.merge] INFO 2025-09-13 00:47:20,360 [ scc.merge] INFO Conflicting PRs (not included): 2025-09-13 00:47:20,360 [ scc.merge] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-13 00:47:20,360 [ scc.merge] INFO 2025-09-13 00:47:20,360 [ scc.merge] INFO Repository: ome/omero-metadata 2025-09-13 00:47:20,360 [ scc.merge] INFO Updating 3cd120c..55060a2 2025-09-13 00:47:20,360 [ scc.merge] INFO Previously merged: 2025-09-13 00:47:20,360 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2025-09-13 00:47:20,360 [ scc.merge] INFO 2025-09-13 00:47:20,360 [ scc.merge] INFO Conflicting PRs (not included): 2025-09-13 00:47:20,360 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names' 2025-09-13 00:47:20,360 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate' 2025-09-13 00:47:20,360 [ scc.merge] INFO 2025-09-13 00:47:20,360 [ scc.merge] INFO Repository: ome/omero-parade 2025-09-13 00:47:20,360 [ scc.merge] INFO Excluded PRs: 2025-09-13 00:47:20,360 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft) 2025-09-13 00:47:20,360 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment) 2025-09-13 00:47:20,360 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment) 2025-09-13 00:47:20,360 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment) 2025-09-13 00:47:20,360 [ scc.merge] INFO Already up to date. 2025-09-13 00:47:20,360 [ scc.merge] INFO 2025-09-13 00:47:20,360 [ scc.merge] INFO Merged PRs: 2025-09-13 00:47:20,360 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' 2025-09-13 00:47:20,360 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' 2025-09-13 00:47:20,360 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2025-09-13 00:47:20,360 [ scc.merge] INFO 2025-09-13 00:47:20,360 [ scc.merge] INFO Repository: ome/omero-prometheus-tools 2025-09-13 00:47:20,360 [ scc.merge] INFO Already up to date. 2025-09-13 00:47:20,360 [ scc.merge] INFO 2025-09-13 00:47:20,360 [ scc.merge] INFO Merged PRs: 2025-09-13 00:47:20,360 [ scc.merge] INFO - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-13 00:47:20,360 [ scc.merge] INFO 2025-09-13 00:47:20,360 [ scc.merge] INFO Repository: ome/omero-rois 2025-09-13 00:47:20,360 [ scc.merge] INFO Excluded PRs: 2025-09-13 00:47:20,360 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) 2025-09-13 00:47:20,360 [ scc.merge] INFO Already up to date. 2025-09-13 00:47:20,360 [ scc.merge] INFO 2025-09-13 00:47:20,360 [ scc.merge] INFO Merged PRs: 2025-09-13 00:47:20,360 [ scc.merge] INFO - PR 33 jo-mueller 'Add roi to array functions' 2025-09-13 00:47:20,360 [ scc.merge] INFO - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-13 00:47:20,361 [ scc.merge] INFO 2025-09-13 00:47:20,361 [ scc.merge] INFO Repository: ome/omero-signup 2025-09-13 00:47:20,361 [ scc.merge] INFO Already up to date. 2025-09-13 00:47:20,361 [ scc.merge] INFO 2025-09-13 00:47:20,361 [ scc.merge] INFO Merged PRs: 2025-09-13 00:47:20,361 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-13 00:47:20,361 [ scc.merge] INFO 2025-09-13 00:47:20,361 [ scc.merge] INFO Conflicting PRs (not included): 2025-09-13 00:47:20,361 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)' 2025-09-13 00:47:20,361 [ scc.merge] INFO 2025-09-13 00:47:20,361 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra 2025-09-13 00:47:20,361 [ scc.merge] INFO Excluded PRs: 2025-09-13 00:47:20,361 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles) 2025-09-13 00:47:20,361 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure) 2025-09-13 00:47:20,361 [ scc.merge] INFO - PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles) 2025-09-13 00:47:20,361 [ scc.merge] INFO Already up to date. 2025-09-13 00:47:20,361 [ scc.merge] INFO 2025-09-13 00:47:20,361 [ scc.merge] INFO Merged PRs: 2025-09-13 00:47:20,361 [ scc.merge] INFO - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra' 2025-09-13 00:47:20,361 [ scc.merge] INFO - PR 76 will-moore 'Run cli deps' 2025-09-13 00:47:20,361 [ scc.merge] INFO 2025-09-13 00:47:20,361 [ scc.merge] INFO Repository: ome/omero-upload 2025-09-13 00:47:20,361 [ scc.merge] INFO Already up to date. 2025-09-13 00:47:20,361 [ scc.merge] INFO 2025-09-13 00:47:20,361 [ scc.merge] INFO Merged PRs: 2025-09-13 00:47:20,361 [ scc.merge] INFO - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-13 00:47:20,361 [ scc.merge] INFO 2025-09-13 00:47:20,361 [ scc.merge] INFO Repository: ome/omero-virtual-microscope 2025-09-13 00:47:20,361 [ scc.merge] INFO Updating deab817..160d894 2025-09-13 00:47:20,361 [ scc.merge] INFO Previously merged: 2025-09-13 00:47:20,361 [ scc.merge] INFO - PR 20 jburel 'Build' 2025-09-13 00:47:20,361 [ scc.merge] INFO 2025-09-13 00:47:20,361 [ scc.merge] INFO Merged PRs: 2025-09-13 00:47:20,361 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-13 00:47:20,361 [ scc.merge] INFO 2025-09-13 00:47:20,361 [ scc.merge] INFO Repository: ome/omero-web-zarr 2025-09-13 00:47:20,361 [ scc.merge] INFO Excluded PRs: 2025-09-13 00:47:20,361 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft) 2025-09-13 00:47:20,361 [ scc.merge] INFO Updating 8f3c313..00e0207 2025-09-13 00:47:20,362 [ scc.merge] INFO Previously merged: 2025-09-13 00:47:20,362 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints' 2025-09-13 00:47:20,362 [ scc.merge] INFO 2025-09-13 00:47:20,362 [ scc.merge] INFO Merged PRs: 2025-09-13 00:47:20,362 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import' 2025-09-13 00:47:20,362 [ scc.merge] INFO 2025-09-13 00:47:20,362 [ scc.merge] INFO Conflicting PRs (not included): 2025-09-13 00:47:20,362 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' 2025-09-13 00:47:20,362 [ scc.merge] INFO 2025-09-13 00:47:20,362 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror 2025-09-13 00:47:20,362 [ scc.merge] INFO Already up to date. 2025-09-13 00:47:20,362 [ scc.merge] INFO 2025-09-13 00:47:20,362 [ scc.merge] INFO Merged PRs: 2025-09-13 00:47:20,362 [ scc.merge] INFO - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-13 00:47:20,362 [ scc.merge] INFO 2025-09-13 00:47:20,362 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest 2025-09-13 00:47:20,362 [ scc.merge] INFO Already up to date. 2025-09-13 00:47:20,362 [ scc.merge] INFO 2025-09-13 00:47:20,362 [ scc.merge] INFO Merged PRs: 2025-09-13 00:47:20,362 [ scc.merge] INFO - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-09-13 00:47:20,362 [ scc.merge] INFO 2025-09-13 00:47:20,362 [ scc.merge] INFO Repository: ome/rOMERO-gateway 2025-09-13 00:47:20,362 [ scc.merge] INFO Already up to date. 2025-09-13 00:47:20,362 [ scc.merge] INFO 2025-09-13 00:47:20,362 [ scc.merge] INFO Conflicting PRs (not included): 2025-09-13 00:47:20,362 [ scc.merge] INFO - PR 100 dominikl 'Run tests properly' 2025-09-13 00:47:20,362 [ scc.merge] INFO 2025-09-13 00:47:20,362 [ scc.merge] INFO Repository: ome/scripts 2025-09-13 00:47:20,362 [ scc.merge] INFO Excluded PRs: 2025-09-13 00:47:20,362 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn) 2025-09-13 00:47:20,362 [ scc.merge] INFO - PR 103 joshmoore 'Script for calculating min/max' (exclude comment) 2025-09-13 00:47:20,362 [ scc.merge] INFO Updating 4b4c755..03b9116 2025-09-13 00:47:20,362 [ scc.merge] INFO Previously merged: 2025-09-13 00:47:20,362 [ scc.merge] INFO - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows' 2025-09-13 00:47:20,362 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes' 2025-09-13 00:47:20,362 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests' 2025-09-13 00:47:20,362 [ scc.merge] INFO 2025-09-13 00:47:20,362 [ scc.merge] INFO Merged PRs: 2025-09-13 00:47:20,362 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images' 2025-09-13 00:47:20,363 [ scc.merge] INFO 2025-09-13 00:47:20,363 [ scc.merge] INFO Conflicting PRs (not included): 2025-09-13 00:47:20,363 [ scc.merge] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py' 2025-09-13 00:47:20,363 [ scc.merge] INFO 2025-09-13 00:47:20,363 [ scc.merge] DEBUG Cleaning remote branches created for merging 2025-09-13 00:47:20,363 [ scc.git] DEBUG Calling 'git remote' 2025-09-13 00:47:20,365 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client 2025-09-13 00:47:20,365 [ scc.git] DEBUG Calling 'git remote' 2025-09-13 00:47:20,367 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:47:20,367 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate 2025-09-13 00:47:20,367 [ scc.git] DEBUG Calling 'git remote' 2025-09-13 00:47:20,370 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:47:20,370 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render 2025-09-13 00:47:20,370 [ scc.git] DEBUG Calling 'git remote' 2025-09-13 00:47:20,372 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:47:20,372 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr 2025-09-13 00:47:20,372 [ scc.git] DEBUG Calling 'git remote' 2025-09-13 00:47:20,374 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:47:20,374 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure 2025-09-13 00:47:20,374 [ scc.git] DEBUG Calling 'git remote' 2025-09-13 00:47:20,377 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:47:20,377 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage 2025-09-13 00:47:20,377 [ scc.git] DEBUG Calling 'git remote' 2025-09-13 00:47:20,379 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:47:20,379 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery 2025-09-13 00:47:20,379 [ scc.git] DEBUG Calling 'git remote' 2025-09-13 00:47:20,381 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:47:20,381 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer 2025-09-13 00:47:20,381 [ scc.git] DEBUG Calling 'git remote' 2025-09-13 00:47:20,383 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:47:20,383 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr 2025-09-13 00:47:20,384 [ scc.git] DEBUG Calling 'git remote' 2025-09-13 00:47:20,386 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:47:20,386 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata 2025-09-13 00:47:20,386 [ scc.git] DEBUG Calling 'git remote' 2025-09-13 00:47:20,389 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:47:20,389 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade 2025-09-13 00:47:20,389 [ scc.git] DEBUG Calling 'git remote' 2025-09-13 00:47:20,391 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:47:20,391 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools 2025-09-13 00:47:20,391 [ scc.git] DEBUG Calling 'git remote' 2025-09-13 00:47:20,393 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:47:20,393 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois 2025-09-13 00:47:20,393 [ scc.git] DEBUG Calling 'git remote' 2025-09-13 00:47:20,396 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:47:20,396 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup 2025-09-13 00:47:20,396 [ scc.git] DEBUG Calling 'git remote' 2025-09-13 00:47:20,398 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:47:20,398 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra 2025-09-13 00:47:20,398 [ scc.git] DEBUG Calling 'git remote' 2025-09-13 00:47:20,400 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:47:20,400 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload 2025-09-13 00:47:20,400 [ scc.git] DEBUG Calling 'git remote' 2025-09-13 00:47:20,403 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:47:20,403 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope 2025-09-13 00:47:20,403 [ scc.git] DEBUG Calling 'git remote' 2025-09-13 00:47:20,405 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:47:20,405 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr 2025-09-13 00:47:20,405 [ scc.git] DEBUG Calling 'git remote' 2025-09-13 00:47:20,407 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:47:20,407 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror 2025-09-13 00:47:20,407 [ scc.git] DEBUG Calling 'git remote' 2025-09-13 00:47:20,410 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:47:20,410 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest 2025-09-13 00:47:20,410 [ scc.git] DEBUG Calling 'git remote' 2025-09-13 00:47:20,412 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:47:20,412 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway 2025-09-13 00:47:20,412 [ scc.git] DEBUG Calling 'git remote' 2025-09-13 00:47:20,415 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-09-13 00:47:20,415 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts 2025-09-13 00:47:20,415 [ scc.git] DEBUG Calling 'git remote' 2025-09-13 00:47:20,418 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push Update component versions python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer. warnings.warn( WARNING: The wheel package is not available. WARNING: The wheel package is not available. /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer. warnings.warn( WARNING: The wheel package is not available. WARNING: The wheel package is not available. /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0' warnings.warn(tmpl.format(**locals())) /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0' warnings.warn(tmpl.format(**locals())) /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory Updating omero-gateway from 5.10.0 to 5.10.4-SNAPSHOT grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Commit all component version changes Entering 'minimal-omero-client' Entering 'omero-cli-duplicate' Entering 'omero-cli-render' Entering 'omero-cli-zarr' Entering 'omero-figure' Entering 'omero-fpbioimage' Entering 'omero-gallery' Entering 'omero-iviewer' Entering 'omero-mapr' Entering 'omero-metadata' Entering 'omero-parade' Entering 'omero-prometheus-tools' Entering 'omero-rois' Entering 'omero-signup' Entering 'omero-test-infra' Entering 'omero-upload' Entering 'omero-virtual-microscope' Entering 'omero-web-zarr' Entering 'omero-weberror' Entering 'omero-webtest' Entering 'rOMERO-gateway' Entering 'scripts' Entering 'minimal-omero-client' [detached HEAD 5031ecc] Update component versions 1 file changed, 1 insertion(+), 1 deletion(-) Entering 'omero-cli-duplicate' HEAD detached from 4777ef8 nothing to commit, working tree clean Entering 'omero-cli-render' HEAD detached from ce6e13c nothing to commit, working tree clean Entering 'omero-cli-zarr' HEAD detached from 11d3587 Untracked files: (use "git add <file>..." to include in what will be committed) .eggs/ nothing added to commit but untracked files present (use "git add" to track) Entering 'omero-figure' HEAD detached from 9cc36cde nothing to commit, working tree clean Entering 'omero-fpbioimage' HEAD detached from 3b6c05a nothing to commit, working tree clean Entering 'omero-gallery' HEAD detached from 2a621da nothing to commit, working tree clean Entering 'omero-iviewer' HEAD detached from 7a798ce nothing to commit, working tree clean Entering 'omero-mapr' HEAD detached from 0a557da nothing to commit, working tree clean Entering 'omero-metadata' HEAD detached from 3cd120c nothing to commit, working tree clean Entering 'omero-parade' HEAD detached from fb5ae86 nothing to commit, working tree clean Entering 'omero-prometheus-tools' HEAD detached from eb47378 nothing to commit, working tree clean Entering 'omero-rois' HEAD detached from bdfeb5e nothing to commit, working tree clean Entering 'omero-signup' HEAD detached from be76813 nothing to commit, working tree clean Entering 'omero-test-infra' HEAD detached from cda3ec6 nothing to commit, working tree clean Entering 'omero-upload' HEAD detached from 100f6ae nothing to commit, working tree clean Entering 'omero-virtual-microscope' HEAD detached from deab817 nothing to commit, working tree clean Entering 'omero-web-zarr' HEAD detached from 8f3c313 nothing to commit, working tree clean Entering 'omero-weberror' HEAD detached from 70b01ed nothing to commit, working tree clean Entering 'omero-webtest' HEAD detached from 5bfef29 nothing to commit, working tree clean Entering 'rOMERO-gateway' HEAD detached from 7b5d64d nothing to commit, working tree clean Entering 'scripts' HEAD detached from 4b4c755 nothing to commit, working tree clean [detached HEAD ce57c21] Update component versions 1 file changed, 1 insertion(+), 1 deletion(-) Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 2025-09-13 00:48:06,544 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 2025-09-13 00:48:15,703 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 2025-09-13 00:48:18,081 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2025-09-13 00:48:22,648 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2025-09-13 00:49:02,058 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci [Pipeline] archiveArtifacts Archiving artifacts [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS