Console Output
+ export BASE_REPO=idr.openmicroscopy.org
+ BASE_REPO=idr.openmicroscopy.org
+ export BASE_BRANCH=master
+ BASE_BRANCH=master
+ export VERSION_LOG=/home/omero/workspace/IDRSITE-push/build/version.tsv
+ VERSION_LOG=/home/omero/workspace/IDRSITE-push/build/version.tsv
+ . build/venv/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ unset VIRTUAL_ENV_PROMPT
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/omero/workspace/IDRSITE-push/build/venv
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/home/omero/workspace/IDRSITE-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ PS1='(venv) '
++ export PS1
++ VIRTUAL_ENV_PROMPT='(venv) '
++ export VIRTUAL_ENV_PROMPT
++ hash -r
+ '[' merge_ci '!=' null ']'
+ export PUSH_BRANCH=merge_ci
+ PUSH_BRANCH=merge_ci
+ '[' null '!=' null ']'
+ export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment'
+ STATUS=success-only
+ MERGE_OPTIONS='-vvv --no-ask --reset --comment'
+ bash build/build-infra-master/recursive-merge
Merge base repository (no submodule updates)
2026-11-10 04:26:38,145 [ scc.config] DEBUG Found github.token
2026-11-10 04:26:38,147 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2026-11-10 04:26:38,416 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-10 04:26:38,893 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-10 04:26:39,353 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2026-11-10 04:26:39,354 [ scc.gh] DEBUG 4850 remaining from 5000 (Reset at 04:11
2026-11-10 04:26:39,355 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-11-10 04:26:39,367 [ scc.git] DEBUG Check current status
2026-11-10 04:26:39,367 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-11-10 04:26:39,400 [ scc.git] DEBUG 94915ef Merge pull request #229 from pwalczysko/remove-mybinder
2026-11-10 04:26:39,401 [ scc.git] DEBUG Calling 'git submodule status'
2026-11-10 04:26:39,524 [ scc.config] DEBUG Found remote.origin.url
2026-11-10 04:26:39,911 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/idr/idr.openmicroscopy.org HTTP/1.1" 200 None
2026-11-10 04:26:40,476 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/IDR HTTP/1.1" 200 None
2026-11-10 04:26:40,958 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/IDR/members HTTP/1.1" 200 None
2026-11-10 04:26:40,959 [ scc.git] DEBUG Resetting...
2026-11-10 04:26:40,959 [ scc.git] DEBUG Calling 'git reset --hard HEAD'
2026-11-10 04:26:41,137 [ scc.git] DEBUG HEAD is now at 94915ef Merge pull request #229 from pwalczysko/remove-mybinder
2026-11-10 04:26:41,138 [ scc.git] DEBUG Calling 'git submodule update --recursive'
2026-11-10 04:26:41,261 [ scc.git] DEBUG Check current status
2026-11-10 04:26:41,261 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-11-10 04:26:41,278 [ scc.git] DEBUG 94915ef Merge pull request #229 from pwalczysko/remove-mybinder
2026-11-10 04:26:41,279 [ scc.git] DEBUG Calling 'git submodule status'
2026-11-10 04:26:41,384 [ scc.merge] INFO Merging Pull Request(s) based on master
2026-11-10 04:26:41,384 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
2026-11-10 04:26:41,384 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
2026-11-10 04:26:41,384 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
2026-11-10 04:26:41,384 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
2026-11-10 04:26:41,385 [ scc.repo] DEBUG ## PRs found:
2026-11-10 04:26:41,692 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/pulls HTTP/1.1" 200 None
2026-11-10 04:26:42,214 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/issues/225 HTTP/1.1" 200 None
2026-11-10 04:26:42,744 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/issues/225/comments HTTP/1.1" 200 None
2026-11-10 04:26:42,745 [ scc.repo] DEBUG - PR 225 will-moore 'Fix idr0106 to download from ftp instead of github'
2026-11-10 04:26:42,745 [ scc.repo] DEBUG ## Branches found:
2026-11-10 04:26:42,745 [ scc.git] DEBUG Get sha1 of %s
2026-11-10 04:26:42,745 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-10 04:26:42,761 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-11-10 04:26:42,786 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-11-10 04:26:42,786 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-11-10 04:26:42,817 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-11-10 04:26:42,885 [ scc.git] DEBUG Already up to date.
2026-11-10 04:26:42,885 [ scc.git] DEBUG Calling 'git fetch origin pull/225/head'
2026-11-10 04:26:43,872 [ scc.git] DEBUG From https://github.com/idr/idr.openmicroscopy.org
2026-11-10 04:26:43,872 [ scc.git] DEBUG * branch refs/pull/225/head -> FETCH_HEAD
2026-11-10 04:26:43,897 [ scc.git] DEBUG ## Unique users: []
2026-11-10 04:26:43,897 [ scc.git] DEBUG Get sha1 of %s
2026-11-10 04:26:43,897 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-10 04:26:43,906 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6f494af3a2b57249d4f647d6abea2d46e25beae5'
2026-11-10 04:26:43,959 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-10 04:26:43,972 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 225 (Fix idr0106 to download from ftp instead of github) 6f494af3a2b57249d4f647d6abea2d46e25beae5'
2026-11-10 04:26:44,211 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-11-10 04:26:44,274 [ scc.git] DEBUG _data/download_urls.tsv | 6 +++---
2026-11-10 04:26:44,274 [ scc.git] DEBUG 1 file changed, 3 insertions(+), 3 deletions(-)
2026-11-10 04:26:44,670 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-10 04:26:44,670 [ scc.git] DEBUG Calling 'git submodule update'
2026-11-10 04:26:44,798 [ scc.git] DEBUG Get sha1 of %s
2026-11-10 04:26:44,798 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-10 04:26:44,813 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-11-10 04:26:44,887 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7eff45241650> has no local changes
2026-11-10 04:26:44,887 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone
Repository: idr/idr.openmicroscopy.org
Already up to date.
Merged PRs:
- PR 225 will-moore 'Fix idr0106 to download from ftp instead of github'
Generated by IDRSITE-push#26 (https://merge-ci.openmicroscopy.org/jenkins/job/IDRSITE-push/26/)'
2026-11-10 04:26:45,171 [ scc.git] DEBUG [detached HEAD 69c617e] merge master -Dorg -Snone
2026-11-10 04:26:45,172 [ scc.merge] INFO Repository: idr/idr.openmicroscopy.org
2026-11-10 04:26:45,172 [ scc.merge] INFO Already up to date.
2026-11-10 04:26:45,172 [ scc.merge] INFO
2026-11-10 04:26:45,172 [ scc.merge] INFO Merged PRs:
2026-11-10 04:26:45,172 [ scc.merge] INFO - PR 225 will-moore 'Fix idr0106 to download from ftp instead of github'
2026-11-10 04:26:45,172 [ scc.merge] INFO
2026-11-10 04:26:45,173 [ scc.merge] DEBUG Cleaning remote branches created for merging
2026-11-10 04:26:45,173 [ scc.git] DEBUG Calling 'git remote'
Merge all submodules2026-11-10 04:26:46,475 [ scc.config] DEBUG Found github.token
2026-11-10 04:26:46,476 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2026-11-10 04:26:46,713 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-10 04:26:47,164 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-10 04:26:47,653 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2026-11-10 04:26:47,654 [ scc.gh] DEBUG 4834 remaining from 5000 (Reset at 04:11
2026-11-10 04:26:47,655 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-11-10 04:26:47,665 [ scc.git] DEBUG Check current status
2026-11-10 04:26:47,665 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-11-10 04:26:47,683 [ scc.git] DEBUG 69c617e merge master -Dorg -Snone
2026-11-10 04:26:47,684 [ scc.git] DEBUG Calling 'git submodule status'
2026-11-10 04:26:47,842 [ scc.config] DEBUG Found remote.origin.url
2026-11-10 04:26:48,210 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/idr/idr.openmicroscopy.org HTTP/1.1" 200 None
2026-11-10 04:26:48,740 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/IDR HTTP/1.1" 200 None
2026-11-10 04:26:49,232 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/IDR/members HTTP/1.1" 200 None
2026-11-10 04:26:49,233 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-11-10 04:26:49,340 [ scc.git] DEBUG Resetting...
2026-11-10 04:26:49,340 [ scc.git] DEBUG Calling 'git reset --hard HEAD'
2026-11-10 04:26:49,437 [ scc.git] DEBUG HEAD is now at 69c617e merge master -Dorg -Snone
2026-11-10 04:26:49,438 [ scc.git] DEBUG Calling 'git submodule update --recursive'
2026-11-10 04:26:49,546 [ scc.git] DEBUG Check current status
2026-11-10 04:26:49,546 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-11-10 04:26:49,568 [ scc.git] DEBUG 69c617e merge master -Dorg -Snone
2026-11-10 04:26:49,569 [ scc.git] DEBUG Calling 'git submodule status'
2026-11-10 04:26:49,666 [ scc.merge] INFO Merging Pull Request(s) based on master
2026-11-10 04:26:49,666 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
2026-11-10 04:26:49,666 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
2026-11-10 04:26:49,666 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
2026-11-10 04:26:49,666 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
2026-11-10 04:26:49,666 [ scc.merge] INFO Excluding Pull Request(s) without successful status
2026-11-10 04:26:49,666 [ scc.repo] DEBUG ## PRs found:
2026-11-10 04:26:49,982 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/pulls HTTP/1.1" 200 None
2026-11-10 04:26:50,517 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/issues/225 HTTP/1.1" 200 None
2026-11-10 04:26:51,009 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/issues/225/comments HTTP/1.1" 200 None
2026-11-10 04:26:51,511 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/commits/6f494af3a2b57249d4f647d6abea2d46e25beae5?page=1 HTTP/1.1" 200 None
2026-11-10 04:26:52,046 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/commits/6f494af3a2b57249d4f647d6abea2d46e25beae5/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-11-10 04:26:52,554 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/commits/6f494af3a2b57249d4f647d6abea2d46e25beae5/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-11-10 04:26:53,048 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/commits/6f494af3a2b57249d4f647d6abea2d46e25beae5?page=1 HTTP/1.1" 200 None
2026-11-10 04:26:53,542 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/statuses/6f494af3a2b57249d4f647d6abea2d46e25beae5?per_page=1 HTTP/1.1" 200 2
2026-11-10 04:26:53,542 [ scc.repo] DEBUG - PR 225 will-moore 'Fix idr0106 to download from ftp instead of github'
2026-11-10 04:26:53,542 [ scc.repo] DEBUG ## Branches found:
2026-11-10 04:26:53,542 [ scc.git] DEBUG Get sha1 of %s
2026-11-10 04:26:53,543 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-10 04:26:53,562 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-11-10 04:26:53,590 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-11-10 04:26:53,590 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-11-10 04:26:53,633 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-11-10 04:26:53,742 [ scc.git] DEBUG Already up to date.
2026-11-10 04:26:53,742 [ scc.git] DEBUG Calling 'git fetch origin pull/225/head'
2026-11-10 04:26:54,860 [ scc.git] DEBUG From https://github.com/idr/idr.openmicroscopy.org
2026-11-10 04:26:54,860 [ scc.git] DEBUG * branch refs/pull/225/head -> FETCH_HEAD
2026-11-10 04:26:54,903 [ scc.git] DEBUG ## Unique users: []
2026-11-10 04:26:54,903 [ scc.git] DEBUG Get sha1 of %s
2026-11-10 04:26:54,903 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-10 04:26:54,917 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6f494af3a2b57249d4f647d6abea2d46e25beae5'
2026-11-10 04:26:54,968 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-10 04:26:54,987 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 225 (Fix idr0106 to download from ftp instead of github) 6f494af3a2b57249d4f647d6abea2d46e25beae5'
2026-11-10 04:26:55,068 [ scc.git] DEBUG Already up to date.
2026-11-10 04:26:55,258 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-10 04:26:55,259 [ scc.git] DEBUG Calling 'git submodule update'
2026-11-10 04:26:55,434 [ scc.git] DEBUG Get sha1 of %s
2026-11-10 04:26:55,434 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-10 04:26:55,460 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-11-10 04:26:55,607 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-11-10 04:26:55,676 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f32ce977590> has no local changes
2026-11-10 04:26:55,677 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: idr/idr.openmicroscopy.org
Already up to date.
Merged PRs:
- PR 225 will-moore 'Fix idr0106 to download from ftp instead of github'
Generated by IDRSITE-push#26 (https://merge-ci.openmicroscopy.org/jenkins/job/IDRSITE-push/26/)'
2026-11-10 04:26:55,811 [ scc.git] DEBUG [detached HEAD 19ecd5d] merge master -Dorg -Ssuccess-only
2026-11-10 04:26:55,813 [ scc.merge] INFO Repository: idr/idr.openmicroscopy.org
2026-11-10 04:26:55,813 [ scc.merge] INFO Already up to date.
2026-11-10 04:26:55,813 [ scc.merge] INFO
2026-11-10 04:26:55,813 [ scc.merge] INFO Merged PRs:
2026-11-10 04:26:55,813 [ scc.merge] INFO - PR 225 will-moore 'Fix idr0106 to download from ftp instead of github'
2026-11-10 04:26:55,813 [ scc.merge] INFO
2026-11-10 04:26:55,813 [ scc.merge] DEBUG Cleaning remote branches created for merging
2026-11-10 04:26:55,813 [ scc.git] DEBUG Calling 'git remote'
Update component versions
grep: build.gradle: No such file or directory
grep: settings.gradle: No such file or directory
grep: build.gradle: No such file or directory
grep: build.gradle: No such file or directory
Up-to-date:
Commit all component version changes
HEAD detached from 94915ef
nothing to commit, working tree clean
2026-11-10 04:27:03,969 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/idr.openmicroscopy.org/tree/merge_ci
