Console Output
+ export BASE_REPO=idr.openmicroscopy.org
+ BASE_REPO=idr.openmicroscopy.org
+ export BASE_BRANCH=master
+ BASE_BRANCH=master
+ export VERSION_LOG=/home/omero/workspace/IDRSITE-push/build/version.tsv
+ VERSION_LOG=/home/omero/workspace/IDRSITE-push/build/version.tsv
+ . build/venv/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ unset VIRTUAL_ENV_PROMPT
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/omero/workspace/IDRSITE-push/build/venv
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/home/omero/workspace/IDRSITE-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ PS1='(venv) '
++ export PS1
++ VIRTUAL_ENV_PROMPT='(venv) '
++ export VIRTUAL_ENV_PROMPT
++ hash -r
+ '[' merge_ci '!=' null ']'
+ export PUSH_BRANCH=merge_ci
+ PUSH_BRANCH=merge_ci
+ '[' null '!=' null ']'
+ export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment'
+ STATUS=success-only
+ MERGE_OPTIONS='-vvv --no-ask --reset --comment'
+ bash build/build-infra-master/recursive-merge
Merge base repository (no submodule updates)
2026-11-13 01:40:02,668 [ scc.config] DEBUG Found github.token
2026-11-13 01:40:02,669 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2026-11-13 01:40:02,918 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-13 01:40:03,367 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-13 01:40:03,816 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2026-11-13 01:40:03,817 [ scc.gh] DEBUG 4998 remaining from 5000 (Reset at 02:11
2026-11-13 01:40:03,817 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-11-13 01:40:03,831 [ scc.git] DEBUG Check current status
2026-11-13 01:40:03,831 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-11-13 01:40:03,852 [ scc.git] DEBUG 94915ef Merge pull request #229 from pwalczysko/remove-mybinder
2026-11-13 01:40:03,853 [ scc.git] DEBUG Calling 'git submodule status'
2026-11-13 01:40:03,987 [ scc.config] DEBUG Found remote.origin.url
2026-11-13 01:40:04,400 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/idr/idr.openmicroscopy.org HTTP/1.1" 200 None
2026-11-13 01:40:05,101 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/IDR HTTP/1.1" 200 None
2026-11-13 01:40:05,561 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/IDR/members HTTP/1.1" 200 None
2026-11-13 01:40:05,562 [ scc.git] DEBUG Resetting...
2026-11-13 01:40:05,563 [ scc.git] DEBUG Calling 'git reset --hard HEAD'
2026-11-13 01:40:05,705 [ scc.git] DEBUG HEAD is now at 94915ef Merge pull request #229 from pwalczysko/remove-mybinder
2026-11-13 01:40:05,706 [ scc.git] DEBUG Calling 'git submodule update --recursive'
2026-11-13 01:40:05,826 [ scc.git] DEBUG Check current status
2026-11-13 01:40:05,826 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-11-13 01:40:05,847 [ scc.git] DEBUG 94915ef Merge pull request #229 from pwalczysko/remove-mybinder
2026-11-13 01:40:05,850 [ scc.git] DEBUG Calling 'git submodule status'
2026-11-13 01:40:05,971 [ scc.merge] INFO Merging Pull Request(s) based on master
2026-11-13 01:40:05,971 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
2026-11-13 01:40:05,971 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
2026-11-13 01:40:05,971 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
2026-11-13 01:40:05,971 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
2026-11-13 01:40:05,971 [ scc.repo] DEBUG ## PRs found:
2026-11-13 01:40:06,363 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/pulls HTTP/1.1" 200 None
2026-11-13 01:40:06,974 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/issues/225 HTTP/1.1" 200 None
2026-11-13 01:40:07,516 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/issues/225/comments HTTP/1.1" 200 None
2026-11-13 01:40:07,517 [ scc.repo] DEBUG - PR 225 will-moore 'Fix idr0106 to download from ftp instead of github'
2026-11-13 01:40:07,517 [ scc.repo] DEBUG ## Branches found:
2026-11-13 01:40:07,518 [ scc.git] DEBUG Get sha1 of %s
2026-11-13 01:40:07,518 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-13 01:40:07,530 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-11-13 01:40:07,547 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-11-13 01:40:07,547 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-11-13 01:40:07,565 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-11-13 01:40:07,609 [ scc.git] DEBUG Already up to date.
2026-11-13 01:40:07,609 [ scc.git] DEBUG Calling 'git fetch origin pull/225/head'
2026-11-13 01:40:08,521 [ scc.git] DEBUG From https://github.com/idr/idr.openmicroscopy.org
2026-11-13 01:40:08,521 [ scc.git] DEBUG * branch refs/pull/225/head -> FETCH_HEAD
2026-11-13 01:40:08,545 [ scc.git] DEBUG ## Unique users: []
2026-11-13 01:40:08,545 [ scc.git] DEBUG Get sha1 of %s
2026-11-13 01:40:08,545 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-13 01:40:08,555 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6f494af3a2b57249d4f647d6abea2d46e25beae5'
2026-11-13 01:40:08,602 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-13 01:40:08,612 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 225 (Fix idr0106 to download from ftp instead of github) 6f494af3a2b57249d4f647d6abea2d46e25beae5'
2026-11-13 01:40:08,789 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-11-13 01:40:08,841 [ scc.git] DEBUG _data/download_urls.tsv | 6 +++---
2026-11-13 01:40:08,841 [ scc.git] DEBUG 1 file changed, 3 insertions(+), 3 deletions(-)
2026-11-13 01:40:09,046 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-13 01:40:09,047 [ scc.git] DEBUG Calling 'git submodule update'
2026-11-13 01:40:09,180 [ scc.git] DEBUG Get sha1 of %s
2026-11-13 01:40:09,180 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-13 01:40:09,188 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-11-13 01:40:09,249 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f0517b82c50> has no local changes
2026-11-13 01:40:09,249 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone
Repository: idr/idr.openmicroscopy.org
Already up to date.
Merged PRs:
- PR 225 will-moore 'Fix idr0106 to download from ftp instead of github'
Generated by IDRSITE-push#29 (https://merge-ci.openmicroscopy.org/jenkins/job/IDRSITE-push/29/)'
2026-11-13 01:40:10,907 [ scc.git] DEBUG [detached HEAD 6eb87d9] merge master -Dorg -Snone
2026-11-13 01:40:10,908 [ scc.merge] INFO Repository: idr/idr.openmicroscopy.org
2026-11-13 01:40:10,908 [ scc.merge] INFO Already up to date.
2026-11-13 01:40:10,908 [ scc.merge] INFO
2026-11-13 01:40:10,908 [ scc.merge] INFO Merged PRs:
2026-11-13 01:40:10,908 [ scc.merge] INFO - PR 225 will-moore 'Fix idr0106 to download from ftp instead of github'
2026-11-13 01:40:10,908 [ scc.merge] INFO
2026-11-13 01:40:10,908 [ scc.merge] DEBUG Cleaning remote branches created for merging
2026-11-13 01:40:10,908 [ scc.git] DEBUG Calling 'git remote'
Merge all submodules2026-11-13 01:40:12,104 [ scc.config] DEBUG Found github.token
2026-11-13 01:40:12,106 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2026-11-13 01:40:12,336 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-13 01:40:12,777 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-13 01:40:13,232 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2026-11-13 01:40:13,233 [ scc.gh] DEBUG 4987 remaining from 5000 (Reset at 02:11
2026-11-13 01:40:13,233 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-11-13 01:40:13,244 [ scc.git] DEBUG Check current status
2026-11-13 01:40:13,244 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-11-13 01:40:13,265 [ scc.git] DEBUG 6eb87d9 merge master -Dorg -Snone
2026-11-13 01:40:13,265 [ scc.git] DEBUG Calling 'git submodule status'
2026-11-13 01:40:13,366 [ scc.config] DEBUG Found remote.origin.url
2026-11-13 01:40:13,826 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/idr/idr.openmicroscopy.org HTTP/1.1" 200 None
2026-11-13 01:40:14,369 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/IDR HTTP/1.1" 200 None
2026-11-13 01:40:14,849 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/IDR/members HTTP/1.1" 200 None
2026-11-13 01:40:14,850 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-11-13 01:40:14,949 [ scc.git] DEBUG Resetting...
2026-11-13 01:40:14,949 [ scc.git] DEBUG Calling 'git reset --hard HEAD'
2026-11-13 01:40:15,039 [ scc.git] DEBUG HEAD is now at 6eb87d9 merge master -Dorg -Snone
2026-11-13 01:40:15,040 [ scc.git] DEBUG Calling 'git submodule update --recursive'
2026-11-13 01:40:15,137 [ scc.git] DEBUG Check current status
2026-11-13 01:40:15,138 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-11-13 01:40:15,157 [ scc.git] DEBUG 6eb87d9 merge master -Dorg -Snone
2026-11-13 01:40:15,158 [ scc.git] DEBUG Calling 'git submodule status'
2026-11-13 01:40:15,252 [ scc.merge] INFO Merging Pull Request(s) based on master
2026-11-13 01:40:15,252 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
2026-11-13 01:40:15,252 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
2026-11-13 01:40:15,252 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
2026-11-13 01:40:15,252 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
2026-11-13 01:40:15,252 [ scc.merge] INFO Excluding Pull Request(s) without successful status
2026-11-13 01:40:15,252 [ scc.repo] DEBUG ## PRs found:
2026-11-13 01:40:15,603 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/pulls HTTP/1.1" 200 None
2026-11-13 01:40:16,155 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/issues/225 HTTP/1.1" 200 None
2026-11-13 01:40:16,687 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/issues/225/comments HTTP/1.1" 200 None
2026-11-13 01:40:17,301 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/commits/6f494af3a2b57249d4f647d6abea2d46e25beae5?page=1 HTTP/1.1" 200 None
2026-11-13 01:40:17,864 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/commits/6f494af3a2b57249d4f647d6abea2d46e25beae5/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-11-13 01:40:18,425 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/commits/6f494af3a2b57249d4f647d6abea2d46e25beae5/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-11-13 01:40:18,950 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/commits/6f494af3a2b57249d4f647d6abea2d46e25beae5?page=1 HTTP/1.1" 200 None
2026-11-13 01:40:19,415 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/statuses/6f494af3a2b57249d4f647d6abea2d46e25beae5?per_page=1 HTTP/1.1" 200 2
2026-11-13 01:40:19,415 [ scc.repo] DEBUG - PR 225 will-moore 'Fix idr0106 to download from ftp instead of github'
2026-11-13 01:40:19,415 [ scc.repo] DEBUG ## Branches found:
2026-11-13 01:40:19,415 [ scc.git] DEBUG Get sha1 of %s
2026-11-13 01:40:19,415 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-13 01:40:19,429 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-11-13 01:40:19,443 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-11-13 01:40:19,443 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-11-13 01:40:19,465 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-11-13 01:40:19,524 [ scc.git] DEBUG Already up to date.
2026-11-13 01:40:19,524 [ scc.git] DEBUG Calling 'git fetch origin pull/225/head'
2026-11-13 01:40:20,216 [ scc.git] DEBUG From https://github.com/idr/idr.openmicroscopy.org
2026-11-13 01:40:20,216 [ scc.git] DEBUG * branch refs/pull/225/head -> FETCH_HEAD
2026-11-13 01:40:20,243 [ scc.git] DEBUG ## Unique users: []
2026-11-13 01:40:20,243 [ scc.git] DEBUG Get sha1 of %s
2026-11-13 01:40:20,243 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-13 01:40:20,251 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6f494af3a2b57249d4f647d6abea2d46e25beae5'
2026-11-13 01:40:20,274 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-13 01:40:20,282 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 225 (Fix idr0106 to download from ftp instead of github) 6f494af3a2b57249d4f647d6abea2d46e25beae5'
2026-11-13 01:40:20,321 [ scc.git] DEBUG Already up to date.
2026-11-13 01:40:20,522 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-13 01:40:20,522 [ scc.git] DEBUG Calling 'git submodule update'
2026-11-13 01:40:20,661 [ scc.git] DEBUG Get sha1 of %s
2026-11-13 01:40:20,661 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-13 01:40:20,673 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-11-13 01:40:20,794 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-11-13 01:40:20,871 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f4a236ab410> has no local changes
2026-11-13 01:40:20,871 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: idr/idr.openmicroscopy.org
Already up to date.
Merged PRs:
- PR 225 will-moore 'Fix idr0106 to download from ftp instead of github'
Generated by IDRSITE-push#29 (https://merge-ci.openmicroscopy.org/jenkins/job/IDRSITE-push/29/)'
2026-11-13 01:40:21,030 [ scc.git] DEBUG [detached HEAD 4edeb17] merge master -Dorg -Ssuccess-only
2026-11-13 01:40:21,032 [ scc.merge] INFO Repository: idr/idr.openmicroscopy.org
2026-11-13 01:40:21,032 [ scc.merge] INFO Already up to date.
2026-11-13 01:40:21,032 [ scc.merge] INFO
2026-11-13 01:40:21,032 [ scc.merge] INFO Merged PRs:
2026-11-13 01:40:21,032 [ scc.merge] INFO - PR 225 will-moore 'Fix idr0106 to download from ftp instead of github'
2026-11-13 01:40:21,032 [ scc.merge] INFO
2026-11-13 01:40:21,032 [ scc.merge] DEBUG Cleaning remote branches created for merging
2026-11-13 01:40:21,032 [ scc.git] DEBUG Calling 'git remote'
Update component versions
grep: build.gradle: No such file or directory
grep: settings.gradle: No such file or directory
grep: build.gradle: No such file or directory
grep: build.gradle: No such file or directory
Up-to-date:
Commit all component version changes
HEAD detached from 94915ef
nothing to commit, working tree clean
2026-11-13 01:40:28,503 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/idr.openmicroscopy.org/tree/merge_ci
