Console Output
+ export BASE_REPO=idr.openmicroscopy.org
+ BASE_REPO=idr.openmicroscopy.org
+ export BASE_BRANCH=master
+ BASE_BRANCH=master
+ export VERSION_LOG=/home/omero/workspace/IDRSITE-push/build/version.tsv
+ VERSION_LOG=/home/omero/workspace/IDRSITE-push/build/version.tsv
+ . build/venv/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ unset VIRTUAL_ENV_PROMPT
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/omero/workspace/IDRSITE-push/build/venv
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/home/omero/workspace/IDRSITE-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ PS1='(venv) '
++ export PS1
++ VIRTUAL_ENV_PROMPT='(venv) '
++ export VIRTUAL_ENV_PROMPT
++ hash -r
+ '[' merge_ci '!=' null ']'
+ export PUSH_BRANCH=merge_ci
+ PUSH_BRANCH=merge_ci
+ '[' null '!=' null ']'
+ export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment'
+ STATUS=success-only
+ MERGE_OPTIONS='-vvv --no-ask --reset --comment'
+ bash build/build-infra-master/recursive-merge
Merge base repository (no submodule updates)
2026-11-14 04:48:46,060 [ scc.config] DEBUG Found github.token
2026-11-14 04:48:46,061 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2026-11-14 04:48:46,430 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-14 04:48:46,902 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-14 04:48:47,351 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2026-11-14 04:48:47,352 [ scc.gh] DEBUG 4574 remaining from 5000 (Reset at 05:11
2026-11-14 04:48:47,353 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-11-14 04:48:47,660 [ scc.git] DEBUG Check current status
2026-11-14 04:48:47,660 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-11-14 04:48:47,706 [ scc.git] DEBUG 94915ef Merge pull request #229 from pwalczysko/remove-mybinder
2026-11-14 04:48:47,710 [ scc.git] DEBUG Calling 'git submodule status'
2026-11-14 04:48:47,865 [ scc.config] DEBUG Found remote.origin.url
2026-11-14 04:48:48,204 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/idr/idr.openmicroscopy.org HTTP/1.1" 200 None
2026-11-14 04:48:48,714 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/IDR HTTP/1.1" 200 None
2026-11-14 04:48:49,152 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/IDR/members HTTP/1.1" 200 None
2026-11-14 04:48:49,153 [ scc.git] DEBUG Resetting...
2026-11-14 04:48:49,153 [ scc.git] DEBUG Calling 'git reset --hard HEAD'
2026-11-14 04:48:49,331 [ scc.git] DEBUG HEAD is now at 94915ef Merge pull request #229 from pwalczysko/remove-mybinder
2026-11-14 04:48:49,332 [ scc.git] DEBUG Calling 'git submodule update --recursive'
2026-11-14 04:48:49,476 [ scc.git] DEBUG Check current status
2026-11-14 04:48:49,476 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-11-14 04:48:49,495 [ scc.git] DEBUG 94915ef Merge pull request #229 from pwalczysko/remove-mybinder
2026-11-14 04:48:49,498 [ scc.git] DEBUG Calling 'git submodule status'
2026-11-14 04:48:49,651 [ scc.merge] INFO Merging Pull Request(s) based on master
2026-11-14 04:48:49,651 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
2026-11-14 04:48:49,651 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
2026-11-14 04:48:49,651 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
2026-11-14 04:48:49,651 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
2026-11-14 04:48:49,651 [ scc.repo] DEBUG ## PRs found:
2026-11-14 04:48:50,006 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/pulls HTTP/1.1" 200 None
2026-11-14 04:48:50,499 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/issues/225 HTTP/1.1" 200 None
2026-11-14 04:48:50,997 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/issues/225/comments HTTP/1.1" 200 None
2026-11-14 04:48:50,998 [ scc.repo] DEBUG - PR 225 will-moore 'Fix idr0106 to download from ftp instead of github'
2026-11-14 04:48:50,998 [ scc.repo] DEBUG ## Branches found:
2026-11-14 04:48:50,999 [ scc.git] DEBUG Get sha1 of %s
2026-11-14 04:48:50,999 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-14 04:48:51,017 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-11-14 04:48:51,055 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-11-14 04:48:51,055 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-11-14 04:48:51,092 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-11-14 04:48:51,176 [ scc.git] DEBUG Already up to date.
2026-11-14 04:48:51,176 [ scc.git] DEBUG Calling 'git fetch origin pull/225/head'
2026-11-14 04:48:52,396 [ scc.git] DEBUG From https://github.com/idr/idr.openmicroscopy.org
2026-11-14 04:48:52,396 [ scc.git] DEBUG * branch refs/pull/225/head -> FETCH_HEAD
2026-11-14 04:48:52,428 [ scc.git] DEBUG ## Unique users: []
2026-11-14 04:48:52,428 [ scc.git] DEBUG Get sha1 of %s
2026-11-14 04:48:52,428 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-14 04:48:52,443 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6f494af3a2b57249d4f647d6abea2d46e25beae5'
2026-11-14 04:48:52,499 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-14 04:48:52,514 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 225 (Fix idr0106 to download from ftp instead of github) 6f494af3a2b57249d4f647d6abea2d46e25beae5'
2026-11-14 04:48:52,804 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-11-14 04:48:52,891 [ scc.git] DEBUG _data/download_urls.tsv | 6 +++---
2026-11-14 04:48:52,892 [ scc.git] DEBUG 1 file changed, 3 insertions(+), 3 deletions(-)
2026-11-14 04:48:53,083 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-14 04:48:53,084 [ scc.git] DEBUG Calling 'git submodule update'
2026-11-14 04:48:53,245 [ scc.git] DEBUG Get sha1 of %s
2026-11-14 04:48:53,245 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-14 04:48:53,272 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-11-14 04:48:53,389 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fa707cde4d0> has no local changes
2026-11-14 04:48:53,389 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone
Repository: idr/idr.openmicroscopy.org
Already up to date.
Merged PRs:
- PR 225 will-moore 'Fix idr0106 to download from ftp instead of github'
Generated by IDRSITE-push#31 (https://merge-ci.openmicroscopy.org/jenkins/job/IDRSITE-push/31/)'
2026-11-14 04:48:53,667 [ scc.git] DEBUG [detached HEAD 11162ce] merge master -Dorg -Snone
2026-11-14 04:48:53,669 [ scc.merge] INFO Repository: idr/idr.openmicroscopy.org
2026-11-14 04:48:53,669 [ scc.merge] INFO Already up to date.
2026-11-14 04:48:53,669 [ scc.merge] INFO
2026-11-14 04:48:53,669 [ scc.merge] INFO Merged PRs:
2026-11-14 04:48:53,669 [ scc.merge] INFO - PR 225 will-moore 'Fix idr0106 to download from ftp instead of github'
2026-11-14 04:48:53,669 [ scc.merge] INFO
2026-11-14 04:48:53,669 [ scc.merge] DEBUG Cleaning remote branches created for merging
2026-11-14 04:48:53,669 [ scc.git] DEBUG Calling 'git remote'
Merge all submodules2026-11-14 04:48:55,200 [ scc.config] DEBUG Found github.token
2026-11-14 04:48:55,201 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2026-11-14 04:48:55,458 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-14 04:48:55,897 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-14 04:48:56,336 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2026-11-14 04:48:56,337 [ scc.gh] DEBUG 4565 remaining from 5000 (Reset at 05:11
2026-11-14 04:48:56,338 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-11-14 04:48:56,354 [ scc.git] DEBUG Check current status
2026-11-14 04:48:56,354 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-11-14 04:48:56,376 [ scc.git] DEBUG 11162ce merge master -Dorg -Snone
2026-11-14 04:48:56,377 [ scc.git] DEBUG Calling 'git submodule status'
2026-11-14 04:48:56,556 [ scc.config] DEBUG Found remote.origin.url
2026-11-14 04:48:56,893 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/idr/idr.openmicroscopy.org HTTP/1.1" 200 None
2026-11-14 04:48:57,413 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/IDR HTTP/1.1" 200 None
2026-11-14 04:48:57,924 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/IDR/members HTTP/1.1" 200 None
2026-11-14 04:48:57,926 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-11-14 04:48:58,041 [ scc.git] DEBUG Resetting...
2026-11-14 04:48:58,041 [ scc.git] DEBUG Calling 'git reset --hard HEAD'
2026-11-14 04:48:58,138 [ scc.git] DEBUG HEAD is now at 11162ce merge master -Dorg -Snone
2026-11-14 04:48:58,139 [ scc.git] DEBUG Calling 'git submodule update --recursive'
2026-11-14 04:48:58,253 [ scc.git] DEBUG Check current status
2026-11-14 04:48:58,253 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-11-14 04:48:58,270 [ scc.git] DEBUG 11162ce merge master -Dorg -Snone
2026-11-14 04:48:58,271 [ scc.git] DEBUG Calling 'git submodule status'
2026-11-14 04:48:58,393 [ scc.merge] INFO Merging Pull Request(s) based on master
2026-11-14 04:48:58,393 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
2026-11-14 04:48:58,393 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
2026-11-14 04:48:58,394 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
2026-11-14 04:48:58,394 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
2026-11-14 04:48:58,394 [ scc.merge] INFO Excluding Pull Request(s) without successful status
2026-11-14 04:48:58,394 [ scc.repo] DEBUG ## PRs found:
2026-11-14 04:48:58,681 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/pulls HTTP/1.1" 200 None
2026-11-14 04:48:59,206 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/issues/225 HTTP/1.1" 200 None
2026-11-14 04:48:59,734 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/issues/225/comments HTTP/1.1" 200 None
2026-11-14 04:49:00,418 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/commits/6f494af3a2b57249d4f647d6abea2d46e25beae5?page=1 HTTP/1.1" 200 None
2026-11-14 04:49:00,931 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/commits/6f494af3a2b57249d4f647d6abea2d46e25beae5/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-11-14 04:49:01,442 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/commits/6f494af3a2b57249d4f647d6abea2d46e25beae5/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-11-14 04:49:01,938 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/commits/6f494af3a2b57249d4f647d6abea2d46e25beae5?page=1 HTTP/1.1" 200 None
2026-11-14 04:49:02,414 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/IDR/idr.openmicroscopy.org/statuses/6f494af3a2b57249d4f647d6abea2d46e25beae5?per_page=1 HTTP/1.1" 200 2
2026-11-14 04:49:02,414 [ scc.repo] DEBUG - PR 225 will-moore 'Fix idr0106 to download from ftp instead of github'
2026-11-14 04:49:02,415 [ scc.repo] DEBUG ## Branches found:
2026-11-14 04:49:02,415 [ scc.git] DEBUG Get sha1 of %s
2026-11-14 04:49:02,415 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-14 04:49:02,427 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-11-14 04:49:02,448 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-11-14 04:49:02,448 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-11-14 04:49:02,490 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-11-14 04:49:02,588 [ scc.git] DEBUG Already up to date.
2026-11-14 04:49:02,589 [ scc.git] DEBUG Calling 'git fetch origin pull/225/head'
2026-11-14 04:49:03,393 [ scc.git] DEBUG From https://github.com/idr/idr.openmicroscopy.org
2026-11-14 04:49:03,394 [ scc.git] DEBUG * branch refs/pull/225/head -> FETCH_HEAD
2026-11-14 04:49:03,421 [ scc.git] DEBUG ## Unique users: []
2026-11-14 04:49:03,422 [ scc.git] DEBUG Get sha1 of %s
2026-11-14 04:49:03,422 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-14 04:49:03,433 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6f494af3a2b57249d4f647d6abea2d46e25beae5'
2026-11-14 04:49:03,466 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-14 04:49:03,478 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 225 (Fix idr0106 to download from ftp instead of github) 6f494af3a2b57249d4f647d6abea2d46e25beae5'
2026-11-14 04:49:03,535 [ scc.git] DEBUG Already up to date.
2026-11-14 04:49:03,733 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-11-14 04:49:03,734 [ scc.git] DEBUG Calling 'git submodule update'
2026-11-14 04:49:03,867 [ scc.git] DEBUG Get sha1 of %s
2026-11-14 04:49:03,867 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-11-14 04:49:03,878 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-11-14 04:49:03,994 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-11-14 04:49:04,044 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f11463f3810> has no local changes
2026-11-14 04:49:04,044 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: idr/idr.openmicroscopy.org
Already up to date.
Merged PRs:
- PR 225 will-moore 'Fix idr0106 to download from ftp instead of github'
Generated by IDRSITE-push#31 (https://merge-ci.openmicroscopy.org/jenkins/job/IDRSITE-push/31/)'
2026-11-14 04:49:04,178 [ scc.git] DEBUG [detached HEAD 4652816] merge master -Dorg -Ssuccess-only
2026-11-14 04:49:04,179 [ scc.merge] INFO Repository: idr/idr.openmicroscopy.org
2026-11-14 04:49:04,179 [ scc.merge] INFO Already up to date.
2026-11-14 04:49:04,179 [ scc.merge] INFO
2026-11-14 04:49:04,179 [ scc.merge] INFO Merged PRs:
2026-11-14 04:49:04,179 [ scc.merge] INFO - PR 225 will-moore 'Fix idr0106 to download from ftp instead of github'
2026-11-14 04:49:04,179 [ scc.merge] INFO
2026-11-14 04:49:04,179 [ scc.merge] DEBUG Cleaning remote branches created for merging
2026-11-14 04:49:04,180 [ scc.git] DEBUG Calling 'git remote'
Update component versions
grep: build.gradle: No such file or directory
grep: settings.gradle: No such file or directory
grep: build.gradle: No such file or directory
grep: build.gradle: No such file or directory
Up-to-date:
Commit all component version changes
HEAD detached from 94915ef
nothing to commit, working tree clean
2026-11-14 04:49:12,103 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/idr.openmicroscopy.org/tree/merge_ci
