Started by upstream project "Trigger" build number 73 originally caused by: Started by timer [Pipeline] Start of Pipeline [Pipeline] node Running on testintegration in /home/omero/workspace/OMERO-plugins-push [Pipeline] { [Pipeline] library Loading library recursiveMerge@master Attempting to resolve master from remote references... > git --version # timeout=10 > git --version # 'git version 2.47.3' > git ls-remote -- https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Found match: refs/heads/master revision 654fab96d71411fab33e55b79057bcbf94eef8a2 The recommended git tool is: NONE No credentials specified > git rev-parse --resolve-git-dir /var/jenkins_home/jobs/OMERO-plugins-push/workspace@libs/80042be2aab2f4c47851263660cdf7971582cd0b3548009ec2196c6f3069ef1a/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Fetching without tags Fetching upstream changes from https://github.com/ome/jenkins-library-recursivemerge.git > git --version # timeout=10 > git --version # 'git version 2.47.3' > git fetch --no-tags --force --progress -- https://github.com/ome/jenkins-library-recursivemerge.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Checking out Revision 654fab96d71411fab33e55b79057bcbf94eef8a2 (master) > git config core.sparsecheckout # timeout=10 > git checkout -f 654fab96d71411fab33e55b79057bcbf94eef8a2 # timeout=10 Commit message: "Merge pull request #18 from jburel/python_311" > git rev-list --no-walk 654fab96d71411fab33e55b79057bcbf94eef8a2 # timeout=10 [Pipeline] checkout The recommended git tool is: NONE No credentials specified Fetching changes from the remote Git repository Checking out Revision 84258d5f2eea775a37267d49c87b3698bcfa5d38 (refs/remotes/origin/master) > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-plugins-push/.git # timeout=10 > git config remote.origin.url https://github.com/ome/omero-plugins.git # timeout=10 Fetching upstream changes from https://github.com/ome/omero-plugins.git > git --version # timeout=10 > git --version # 'git version 2.47.3' > git fetch --tags --force --progress -- https://github.com/ome/omero-plugins.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 84258d5f2eea775a37267d49c87b3698bcfa5d38 # timeout=10 Commit message: "Merge pull request #426 from ome/dependabot/submodules/omero-prometheus-tools-eb47378" > git rev-list --no-walk 84258d5f2eea775a37267d49c87b3698bcfa5d38 # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -fdx # timeout=10 > git submodule foreach --recursive git reset --hard # timeout=10 > git submodule foreach --recursive git clean -fdx # timeout=10 > git remote # timeout=10 > git submodule init # timeout=10 > git submodule sync # timeout=10 > git config --get remote.origin.url # timeout=10 > git submodule init # timeout=10 > git config -f .gitmodules --get-regexp ^submodule\.(.+)\.url # timeout=10 > git config --get submodule.omero-figure.url # timeout=10 > git config -f .gitmodules --get submodule.omero-figure.path # timeout=10 > git config --get submodule.minimal-omero-client.url # timeout=10 > git config -f .gitmodules --get submodule.minimal-omero-client.path # timeout=10 > git config --get submodule.scripts.url # timeout=10 > git config -f .gitmodules --get submodule.scripts.path # timeout=10 > git config --get submodule.omero-test-infra.url # timeout=10 > git config -f .gitmodules --get submodule.omero-test-infra.path # timeout=10 > git config --get submodule.omero-prometheus-tools.url # timeout=10 > git config -f .gitmodules --get submodule.omero-prometheus-tools.path # timeout=10 > git config --get submodule.omero-parade.url # timeout=10 > git config -f .gitmodules --get submodule.omero-parade.path # timeout=10 > git config --get submodule.omero-mapr.url # timeout=10 > git config -f .gitmodules --get submodule.omero-mapr.path # timeout=10 > git config --get submodule.omero-fpbioimage.url # timeout=10 > git config -f .gitmodules --get submodule.omero-fpbioimage.path # timeout=10 > git config --get submodule.omero-iviewer.url # timeout=10 > git config -f .gitmodules --get submodule.omero-iviewer.path # timeout=10 > git config --get submodule.omero-gallery.url # timeout=10 > git config -f .gitmodules --get submodule.omero-gallery.path # timeout=10 > git config --get submodule.rOMERO-gateway.url # timeout=10 > git config -f .gitmodules --get submodule.rOMERO-gateway.path # timeout=10 > git config --get submodule.omero-weberror.url # timeout=10 > git config -f .gitmodules --get submodule.omero-weberror.path # timeout=10 > git config --get submodule.omero-cli-render.url # timeout=10 > git config -f .gitmodules --get submodule.omero-cli-render.path # timeout=10 > git config --get submodule.omero-cli-duplicate.url # timeout=10 > git config -f .gitmodules --get submodule.omero-cli-duplicate.path # timeout=10 > git config --get submodule.omero-metadata.url # timeout=10 > git config -f .gitmodules --get submodule.omero-metadata.path # timeout=10 > git config --get submodule.omero-webtest.url # timeout=10 > git config -f .gitmodules --get submodule.omero-webtest.path # timeout=10 > git config --get submodule.omero-upload.url # timeout=10 > git config -f .gitmodules --get submodule.omero-upload.path # timeout=10 > git config --get submodule.omero-virtual-microscope.url # timeout=10 > git config -f .gitmodules --get submodule.omero-virtual-microscope.path # timeout=10 > git config --get submodule.omero-rois.url # timeout=10 > git config -f .gitmodules --get submodule.omero-rois.path # timeout=10 > git config --get submodule.omero-signup.url # timeout=10 > git config -f .gitmodules --get submodule.omero-signup.path # timeout=10 > git config --get submodule.omero-web-zarr.url # timeout=10 > git config -f .gitmodules --get submodule.omero-web-zarr.path # timeout=10 > git config --get submodule.omero-cli-zarr.url # timeout=10 > git config -f .gitmodules --get submodule.omero-cli-zarr.path # timeout=10 > git submodule update --init --recursive omero-figure # timeout=10 > git submodule update --init --recursive minimal-omero-client # timeout=10 > git submodule update --init --recursive scripts # timeout=10 > git submodule update --init --recursive omero-test-infra # timeout=10 > git submodule update --init --recursive omero-prometheus-tools # timeout=10 > git submodule update --init --recursive omero-parade # timeout=10 > git submodule update --init --recursive omero-mapr # timeout=10 > git submodule update --init --recursive omero-fpbioimage # timeout=10 > git submodule update --init --recursive omero-iviewer # timeout=10 > git submodule update --init --recursive omero-gallery # timeout=10 > git submodule update --init --recursive rOMERO-gateway # timeout=10 > git submodule update --init --recursive omero-weberror # timeout=10 > git submodule update --init --recursive omero-cli-render # timeout=10 > git submodule update --init --recursive omero-cli-duplicate # timeout=10 > git submodule update --init --recursive omero-metadata # timeout=10 > git submodule update --init --recursive omero-webtest # timeout=10 > git submodule update --init --recursive omero-upload # timeout=10 > git submodule update --init --recursive omero-virtual-microscope # timeout=10 > git submodule update --init --recursive omero-rois # timeout=10 [Pipeline] pwd [Pipeline] copyArtifacts Copied 1 artifact from "OMERO-build-push" build number 49 [Pipeline] sh + pushd build ~/workspace/OMERO-plugins-push/build ~/workspace/OMERO-plugins-push + curl -sfL https://github.com/ome/build-infra/archive/master.tar.gz + tar -zxf - + popd ~/workspace/OMERO-plugins-push + python3.11 -m venv build/venv > git submodule update --init --recursive omero-signup # timeout=10 > git submodule update --init --recursive omero-web-zarr # timeout=10 > git submodule update --init --recursive omero-cli-zarr # timeout=10 + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-plugins-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-plugins-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(venv) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + python3.11 -m pip install -U pip Requirement already satisfied: pip in ./build/venv/lib64/python3.11/site-packages (22.3.1) Collecting pip Using cached pip-26.0.1-py3-none-any.whl (1.8 MB) Installing collected packages: pip Attempting uninstall: pip Found existing installation: pip 22.3.1 Uninstalling pip-22.3.1: Successfully uninstalled pip-22.3.1 Successfully installed pip-26.0.1 + python3.11 -m pip install scc Collecting scc Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB) Collecting PyGithub>=1.54 (from scc) Using cached pygithub-2.8.1-py3-none-any.whl.metadata (3.9 kB) Collecting PyYAML>=5.1 (from scc) Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB) Collecting future (from scc) Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) Collecting ruamel.yaml (from scc) Using cached ruamel_yaml-0.19.1-py3-none-any.whl.metadata (16 kB) Collecting ruamel.yaml.jinja2 (from scc) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB) Collecting six (from scc) Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) Collecting urllib3<2 (from scc) Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB) Collecting yaclifw<0.3,>=0.2.0 (from scc) Using cached yaclifw-0.2.0-py3-none-any.whl Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc) Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl.metadata (10.0 kB) Collecting requests>=2.14.0 (from PyGithub>=1.54->scc) Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB) Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached pyjwt-2.11.0-py3-none-any.whl.metadata (4.0 kB) Collecting typing-extensions>=4.5.0 (from PyGithub>=1.54->scc) Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB) Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cryptography-46.0.5-cp311-abi3-manylinux_2_34_x86_64.whl.metadata (5.7 kB) Collecting cffi>=2.0.0 (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cffi-2.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (2.6 kB) Collecting pycparser (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached pycparser-3.0-py3-none-any.whl.metadata (8.2 kB) Collecting charset_normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (37 kB) Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached idna-3.11-py3-none-any.whl.metadata (8.4 kB) Collecting certifi>=2017.4.17 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached certifi-2026.1.4-py3-none-any.whl.metadata (2.5 kB) Using cached scc-0.20.0-py3-none-any.whl (48 kB) Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) Using cached pygithub-2.8.1-py3-none-any.whl (432 kB) Using cached pyjwt-2.11.0-py3-none-any.whl (28 kB) Using cached cryptography-46.0.5-cp311-abi3-manylinux_2_34_x86_64.whl (4.5 MB) Using cached cffi-2.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (215 kB) Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl (1.4 MB) Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) Using cached requests-2.32.5-py3-none-any.whl (64 kB) Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB) Using cached idna-3.11-py3-none-any.whl (71 kB) Using cached certifi-2026.1.4-py3-none-any.whl (152 kB) Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB) Using cached future-1.0.0-py3-none-any.whl (491 kB) Using cached pycparser-3.0-py3-none-any.whl (48 kB) Using cached ruamel_yaml-0.19.1-py3-none-any.whl (118 kB) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB) Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) Installing collected packages: urllib3, typing-extensions, six, ruamel.yaml, PyYAML, pyjwt, pycparser, idna, future, charset_normalizer, certifi, yaclifw, ruamel.yaml.jinja2, requests, cffi, pynacl, cryptography, PyGithub, scc Successfully installed PyGithub-2.8.1 PyYAML-6.0.3 certifi-2026.1.4 cffi-2.0.0 charset_normalizer-3.4.4 cryptography-46.0.5 future-1.0.0 idna-3.11 pycparser-3.0 pyjwt-2.11.0 pynacl-1.6.2 requests-2.32.5 ruamel.yaml-0.19.1 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.17.0 typing-extensions-4.15.0 urllib3-1.26.20 yaclifw-0.2.0 [Pipeline] sh + export BASE_REPO=omero-plugins.git + BASE_REPO=omero-plugins.git + export BASE_BRANCH=master + BASE_BRANCH=master + export VERSION_LOG=/home/omero/workspace/OMERO-plugins-push/build/version.tsv + VERSION_LOG=/home/omero/workspace/OMERO-plugins-push/build/version.tsv + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-plugins-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-plugins-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(venv) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + '[' merge_ci '!=' null ']' + export PUSH_BRANCH=merge_ci + PUSH_BRANCH=merge_ci + '[' null '!=' null ']' + export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment' + STATUS=success-only + MERGE_OPTIONS='-vvv --no-ask --reset --comment' + bash build/build-infra-master/recursive-merge Merge base repository (no submodule updates) 2026-02-11 00:43:07,437 [ scc.config] DEBUG Found github.token 2026-02-11 00:43:07,438 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2026-02-11 00:43:07,661 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:43:08,071 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:43:08,459 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2026-02-11 00:43:08,459 [ scc.gh] DEBUG 4624 remaining from 5000 (Reset at 01:02 2026-02-11 00:43:08,460 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-02-11 00:43:08,462 [ scc.git] DEBUG Check current status 2026-02-11 00:43:08,462 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-11 00:43:08,465 [ scc.git] DEBUG 84258d5 Merge pull request #426 from ome/dependabot/submodules/omero-prometheus-tools-eb47378 2026-02-11 00:43:08,465 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-11 00:43:08,512 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master) 2026-02-11 00:43:08,515 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2026-02-11 00:43:08,518 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c) 2026-02-11 00:43:08,521 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587) 2026-02-11 00:43:08,524 [ scc.git] DEBUG fb316a7ee6ca8aa5bc8dc55dd0acfa88fe3ca228 omero-figure (v7.2.0-1-gfb316a7e) 2026-02-11 00:43:08,527 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2026-02-11 00:43:08,530 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2026-02-11 00:43:08,533 [ scc.git] DEBUG b4102d46958a805cacff0c7ccceb05ccff746309 omero-iviewer (v0.15.0-1-gb4102d4) 2026-02-11 00:43:08,535 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2026-02-11 00:43:08,538 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c) 2026-02-11 00:43:08,541 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2026-02-11 00:43:08,543 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2026-02-11 00:43:08,547 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2026-02-11 00:43:08,549 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2026-02-11 00:43:08,552 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6) 2026-02-11 00:43:08,555 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2026-02-11 00:43:08,558 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2026-02-11 00:43:08,560 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313) 2026-02-11 00:43:08,563 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2026-02-11 00:43:08,565 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2026-02-11 00:43:08,568 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2026-02-11 00:43:08,571 [ scc.git] DEBUG 312afbed633613e1f728a1fe9eaac096e54318e0 scripts (v5.8.3-1-g312afbe) 2026-02-11 00:43:08,574 [ scc.config] DEBUG Found remote.origin.url 2026-02-11 00:43:09,027 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins HTTP/1.1" 200 None 2026-02-11 00:43:09,502 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-02-11 00:43:09,937 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-02-11 00:43:10,358 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-02-11 00:43:10,810 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-02-11 00:43:10,811 [ scc.git] DEBUG Resetting... 2026-02-11 00:43:10,811 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2026-02-11 00:43:10,819 [ scc.git] DEBUG HEAD is now at 84258d5 Merge pull request #426 from ome/dependabot/submodules/omero-prometheus-tools-eb47378 2026-02-11 00:43:10,819 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2026-02-11 00:43:10,919 [ scc.git] DEBUG Check current status 2026-02-11 00:43:10,919 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-11 00:43:10,921 [ scc.git] DEBUG 84258d5 Merge pull request #426 from ome/dependabot/submodules/omero-prometheus-tools-eb47378 2026-02-11 00:43:10,922 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-11 00:43:10,965 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master) 2026-02-11 00:43:10,967 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2026-02-11 00:43:10,970 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c) 2026-02-11 00:43:10,973 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587) 2026-02-11 00:43:10,976 [ scc.git] DEBUG fb316a7ee6ca8aa5bc8dc55dd0acfa88fe3ca228 omero-figure (v7.2.0-1-gfb316a7e) 2026-02-11 00:43:10,979 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2026-02-11 00:43:10,982 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2026-02-11 00:43:10,984 [ scc.git] DEBUG b4102d46958a805cacff0c7ccceb05ccff746309 omero-iviewer (v0.15.0-1-gb4102d4) 2026-02-11 00:43:10,987 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2026-02-11 00:43:10,990 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c) 2026-02-11 00:43:10,992 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2026-02-11 00:43:10,995 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2026-02-11 00:43:10,998 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2026-02-11 00:43:11,000 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2026-02-11 00:43:11,003 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6) 2026-02-11 00:43:11,006 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2026-02-11 00:43:11,008 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2026-02-11 00:43:11,011 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313) 2026-02-11 00:43:11,013 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2026-02-11 00:43:11,016 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2026-02-11 00:43:11,019 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2026-02-11 00:43:11,022 [ scc.git] DEBUG 312afbed633613e1f728a1fe9eaac096e54318e0 scripts (v5.8.3-1-g312afbe) 2026-02-11 00:43:11,022 [ scc.merge] INFO Merging Pull Request(s) based on master 2026-02-11 00:43:11,022 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2026-02-11 00:43:11,023 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2026-02-11 00:43:11,023 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2026-02-11 00:43:11,023 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2026-02-11 00:43:11,023 [ scc.repo] DEBUG ## PRs found: 2026-02-11 00:43:11,366 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/pulls HTTP/1.1" 200 None 2026-02-11 00:43:11,920 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/433 HTTP/1.1" 200 None 2026-02-11 00:43:11,921 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-11 00:43:11,921 [ scc.repo] DEBUG - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2026-02-11 00:43:12,499 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/432 HTTP/1.1" 200 None 2026-02-11 00:43:12,499 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-11 00:43:12,499 [ scc.repo] DEBUG - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2026-02-11 00:43:13,043 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/429 HTTP/1.1" 200 None 2026-02-11 00:43:13,043 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-11 00:43:13,043 [ scc.repo] DEBUG - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2026-02-11 00:43:13,043 [ scc.repo] DEBUG ## Branches found: 2026-02-11 00:43:13,043 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:43:13,043 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:43:13,046 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-02-11 00:43:13,048 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-02-11 00:43:13,048 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-02-11 00:43:13,050 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-02-11 00:43:13,053 [ scc.git] DEBUG Already up to date. 2026-02-11 00:43:13,054 [ scc.git] DEBUG Calling 'git fetch origin pull/429/head' 2026-02-11 00:43:13,323 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-02-11 00:43:13,323 [ scc.git] DEBUG * branch refs/pull/429/head -> FETCH_HEAD 2026-02-11 00:43:13,327 [ scc.git] DEBUG Calling 'git fetch origin pull/432/head' 2026-02-11 00:43:13,585 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-02-11 00:43:13,585 [ scc.git] DEBUG * branch refs/pull/432/head -> FETCH_HEAD 2026-02-11 00:43:13,589 [ scc.git] DEBUG Calling 'git fetch origin pull/433/head' 2026-02-11 00:43:13,985 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-02-11 00:43:13,985 [ scc.git] DEBUG * branch refs/pull/433/head -> FETCH_HEAD 2026-02-11 00:43:13,989 [ scc.git] DEBUG ## Unique users: [] 2026-02-11 00:43:13,989 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:43:13,989 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:43:13,991 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2026-02-11 00:43:13,994 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:43:13,996 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 429 (Bump scripts from `312afbe` to `4b4c755`) 3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2026-02-11 00:43:14,010 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-11 00:43:14,013 [ scc.git] DEBUG scripts | 2 +- 2026-02-11 00:43:14,013 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-02-11 00:43:14,165 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:43:14,166 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25bf90a85a7e0945e652f9d78050c8c4860acb51' 2026-02-11 00:43:14,169 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:43:14,171 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 432 (Bump omero-figure from `fb316a7` to `9cc36cd`) 25bf90a85a7e0945e652f9d78050c8c4860acb51' 2026-02-11 00:43:14,195 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-11 00:43:14,198 [ scc.git] DEBUG omero-figure | 2 +- 2026-02-11 00:43:14,198 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-02-11 00:43:14,557 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:43:14,558 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6fd5dc72efc90d7f749b332dba3f903414852d74' 2026-02-11 00:43:14,560 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:43:14,563 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 433 (Bump omero-iviewer from `b4102d4` to `7a798ce`) 6fd5dc72efc90d7f749b332dba3f903414852d74' 2026-02-11 00:43:14,578 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-11 00:43:14,581 [ scc.git] DEBUG omero-iviewer | 2 +- 2026-02-11 00:43:14,581 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-02-11 00:43:14,964 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:43:14,964 [ scc.git] DEBUG Calling 'git submodule update' 2026-02-11 00:43:15,024 [ scc.git] DEBUG Submodule path 'omero-figure': checked out '9cc36cde05bde4def7b62b07c2e9ae5f66712e96' 2026-02-11 00:43:15,047 [ scc.git] DEBUG Submodule path 'omero-iviewer': checked out '7a798ceeb3926d049d73788555fb63269a071052' 2026-02-11 00:43:15,060 [ scc.git] DEBUG Submodule path 'scripts': checked out '4b4c755af4ccf8a5e709548d1f8415fab48a4867' 2026-02-11 00:43:15,061 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:43:15,061 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:43:15,063 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-02-11 00:43:15,541 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f641e33d3d0> has no local changes 2026-02-11 00:43:15,541 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone Repository: ome/omero-plugins Already up to date. Merged PRs: - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' Generated by OMERO-plugins-push#52 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/52/)' 2026-02-11 00:43:15,610 [ scc.git] DEBUG [detached HEAD c64cec4] merge master -Dorg -Snone 2026-02-11 00:43:15,611 [ scc.merge] INFO Repository: ome/omero-plugins 2026-02-11 00:43:15,611 [ scc.merge] INFO Already up to date. 2026-02-11 00:43:15,611 [ scc.merge] INFO 2026-02-11 00:43:15,611 [ scc.merge] INFO Merged PRs: 2026-02-11 00:43:15,611 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2026-02-11 00:43:15,611 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2026-02-11 00:43:15,611 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2026-02-11 00:43:15,611 [ scc.merge] INFO 2026-02-11 00:43:15,611 [ scc.merge] DEBUG Cleaning remote branches created for merging 2026-02-11 00:43:15,611 [ scc.git] DEBUG Calling 'git remote' Synchronizing submodule url for 'minimal-omero-client' Synchronizing submodule url for 'omero-cli-duplicate' Synchronizing submodule url for 'omero-cli-render' Synchronizing submodule url for 'omero-cli-zarr' Synchronizing submodule url for 'omero-figure' Synchronizing submodule url for 'omero-fpbioimage' Synchronizing submodule url for 'omero-gallery' Synchronizing submodule url for 'omero-iviewer' Synchronizing submodule url for 'omero-mapr' Synchronizing submodule url for 'omero-metadata' Synchronizing submodule url for 'omero-parade' Synchronizing submodule url for 'omero-prometheus-tools' Synchronizing submodule url for 'omero-rois' Synchronizing submodule url for 'omero-signup' Synchronizing submodule url for 'omero-test-infra' Synchronizing submodule url for 'omero-upload' Synchronizing submodule url for 'omero-virtual-microscope' Synchronizing submodule url for 'omero-web-zarr' Synchronizing submodule url for 'omero-weberror' Synchronizing submodule url for 'omero-webtest' Synchronizing submodule url for 'rOMERO-gateway' Synchronizing submodule url for 'scripts' Submodule path 'omero-cli-render': checked out '68b73035cf2ab21ddd92022b80bda0966547b3c8' Submodule path 'omero-cli-zarr': checked out '9530c10ba9823fcba6b39139987bf4bcd4a60179' Submodule path 'omero-figure': checked out 'e241dc01b21d8800b6e34e087cbf7099046f68e6' Submodule path 'omero-iviewer': checked out '5e2de43ad401fb00690a79644056e0ac15fabfd5' Submodule path 'omero-metadata': checked out '55060a256e99567f21e64ff3c225d933fba1c501' Submodule path 'omero-test-infra': checked out 'c8a0015b0ce72ee0a49e6968af33de10ea00bc77' Submodule path 'omero-virtual-microscope': checked out '160d894dfb61e69618903425b340c7888f3a934f' Submodule path 'omero-web-zarr': checked out '4e1e685dff22136abfd2626f6fd6eaf985aba368' Submodule path 'scripts': checked out '5b4d76862a7141257c9ff221ff7f009f7ec416c0' Merge all submodules using repository configuration: base-branch: master submodules: scripts: base-branch: develop omero-web-zarr: base-branch: main 2026-02-11 00:43:22,628 [ scc.config] DEBUG Found github.token 2026-02-11 00:43:22,629 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2026-02-11 00:43:22,823 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:43:23,225 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:43:23,620 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2026-02-11 00:43:23,621 [ scc.gh] DEBUG 4610 remaining from 5000 (Reset at 01:02 2026-02-11 00:43:23,621 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-02-11 00:43:23,624 [ scc.git] DEBUG Check current status 2026-02-11 00:43:23,624 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-11 00:43:23,626 [ scc.git] DEBUG c64cec4 merge master -Dorg -Snone 2026-02-11 00:43:23,626 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-11 00:43:23,672 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master) 2026-02-11 00:43:23,675 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2026-02-11 00:43:23,678 [ scc.git] DEBUG +68b73035cf2ab21ddd92022b80bda0966547b3c8 omero-cli-render (v0.8.1-28-g68b7303) 2026-02-11 00:43:23,681 [ scc.git] DEBUG +9530c10ba9823fcba6b39139987bf4bcd4a60179 omero-cli-zarr (v0.7.0rc1-16-g9530c10) 2026-02-11 00:43:23,691 [ scc.git] DEBUG +e241dc01b21d8800b6e34e087cbf7099046f68e6 omero-figure (v7.3.1-36-ge241dc01) 2026-02-11 00:43:23,693 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2026-02-11 00:43:23,696 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2026-02-11 00:43:23,700 [ scc.git] DEBUG +5e2de43ad401fb00690a79644056e0ac15fabfd5 omero-iviewer (v0.16.0-20-g5e2de43) 2026-02-11 00:43:23,702 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2026-02-11 00:43:23,705 [ scc.git] DEBUG +55060a256e99567f21e64ff3c225d933fba1c501 omero-metadata (v0.13.0-8-g55060a2) 2026-02-11 00:43:23,708 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2026-02-11 00:43:23,711 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2026-02-11 00:43:23,714 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2026-02-11 00:43:23,716 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2026-02-11 00:43:23,719 [ scc.git] DEBUG +c8a0015b0ce72ee0a49e6968af33de10ea00bc77 omero-test-infra (v0.6.3-67-gc8a0015) 2026-02-11 00:43:23,722 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2026-02-11 00:43:23,725 [ scc.git] DEBUG +160d894dfb61e69618903425b340c7888f3a934f omero-virtual-microscope (v1.1.1-12-g160d894) 2026-02-11 00:43:23,727 [ scc.git] DEBUG +4e1e685dff22136abfd2626f6fd6eaf985aba368 omero-web-zarr (v0.1.1-13-g4e1e685) 2026-02-11 00:43:23,730 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2026-02-11 00:43:23,732 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2026-02-11 00:43:23,735 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2026-02-11 00:43:23,738 [ scc.git] DEBUG +5b4d76862a7141257c9ff221ff7f009f7ec416c0 scripts (v5.10.0-1-g5b4d768) 2026-02-11 00:43:23,741 [ scc.config] DEBUG Found remote.origin.url 2026-02-11 00:43:23,741 [ scc.git] DEBUG Reading repository configuration from repositories.yml 2026-02-11 00:43:23,742 [ scc.git] DEBUG Repository configuration: base-branch: master submodules: omero-web-zarr: base-branch: main scripts: base-branch: develop 2026-02-11 00:43:24,179 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins HTTP/1.1" 200 None 2026-02-11 00:43:24,641 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-02-11 00:43:25,052 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-02-11 00:43:25,468 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-02-11 00:43:25,936 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-02-11 00:43:25,937 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-11 00:43:26,007 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client 2026-02-11 00:43:26,007 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-02-11 00:43:26,009 [ scc.git] DEBUG Check current status 2026-02-11 00:43:26,009 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-11 00:43:26,012 [ scc.git] DEBUG ca8c2ea Merge pull request #67 from jburel/gateway_5_10_0 2026-02-11 00:43:26,012 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-11 00:43:26,050 [ scc.config] DEBUG Found remote.origin.url 2026-02-11 00:43:26,458 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/minimal-omero-client HTTP/1.1" 200 None 2026-02-11 00:43:26,962 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-02-11 00:43:27,382 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-02-11 00:43:27,819 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-02-11 00:43:28,238 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-02-11 00:43:28,239 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-11 00:43:28,275 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:43:28,275 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate 2026-02-11 00:43:28,275 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-02-11 00:43:28,277 [ scc.git] DEBUG Check current status 2026-02-11 00:43:28,277 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-11 00:43:28,280 [ scc.git] DEBUG 4777ef8 Merge pull request #27 from jburel/build 2026-02-11 00:43:28,280 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-11 00:43:28,318 [ scc.config] DEBUG Found remote.origin.url 2026-02-11 00:43:28,808 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate HTTP/1.1" 200 None 2026-02-11 00:43:29,281 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-02-11 00:43:29,731 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-02-11 00:43:30,136 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-02-11 00:43:30,581 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-02-11 00:43:30,581 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-11 00:43:30,617 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:43:30,618 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render 2026-02-11 00:43:30,618 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-02-11 00:43:30,620 [ scc.git] DEBUG Check current status 2026-02-11 00:43:30,620 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-11 00:43:30,622 [ scc.git] DEBUG 68b7303 Merge pull request #74 from jburel/changelog2ghrelease 2026-02-11 00:43:30,622 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-11 00:43:30,660 [ scc.config] DEBUG Found remote.origin.url 2026-02-11 00:43:31,118 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render HTTP/1.1" 200 None 2026-02-11 00:43:31,601 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-02-11 00:43:32,042 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-02-11 00:43:32,487 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-02-11 00:43:32,916 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-02-11 00:43:32,917 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-11 00:43:32,952 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:43:32,953 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr 2026-02-11 00:43:32,953 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-02-11 00:43:32,955 [ scc.git] DEBUG Check current status 2026-02-11 00:43:32,955 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-11 00:43:32,957 [ scc.git] DEBUG 9530c10 Merge pull request #192 from jburel/pixels_size 2026-02-11 00:43:32,957 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-11 00:43:32,996 [ scc.config] DEBUG Found remote.origin.url 2026-02-11 00:43:33,448 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr HTTP/1.1" 200 None 2026-02-11 00:43:33,943 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-02-11 00:43:34,364 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-02-11 00:43:34,799 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-02-11 00:43:35,234 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-02-11 00:43:35,235 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-11 00:43:35,273 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:43:35,274 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure 2026-02-11 00:43:35,274 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-02-11 00:43:35,276 [ scc.git] DEBUG Check current status 2026-02-11 00:43:35,276 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-11 00:43:35,278 [ scc.git] DEBUG e241dc01 Merge pull request #648 from kaabl/PR543-resurrect 2026-02-11 00:43:35,279 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-11 00:43:35,317 [ scc.config] DEBUG Found remote.origin.url 2026-02-11 00:43:35,791 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure HTTP/1.1" 200 None 2026-02-11 00:43:36,287 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-02-11 00:43:36,705 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-02-11 00:43:37,136 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-02-11 00:43:37,554 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-02-11 00:43:37,555 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-11 00:43:37,593 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:43:37,593 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage 2026-02-11 00:43:37,593 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-02-11 00:43:37,595 [ scc.git] DEBUG Check current status 2026-02-11 00:43:37,596 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-11 00:43:37,598 [ scc.git] DEBUG 3b6c05a Merge pull request #30 from jburel/build 2026-02-11 00:43:37,598 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-11 00:43:37,635 [ scc.config] DEBUG Found remote.origin.url 2026-02-11 00:43:38,097 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage HTTP/1.1" 200 None 2026-02-11 00:43:38,582 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-02-11 00:43:38,999 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-02-11 00:43:39,434 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-02-11 00:43:39,857 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-02-11 00:43:39,858 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-11 00:43:39,897 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:43:39,898 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery 2026-02-11 00:43:39,898 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-02-11 00:43:39,900 [ scc.git] DEBUG Check current status 2026-02-11 00:43:39,900 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-11 00:43:39,902 [ scc.git] DEBUG 2a621da Merge pull request #112 from jburel/build 2026-02-11 00:43:39,902 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-11 00:43:39,939 [ scc.config] DEBUG Found remote.origin.url 2026-02-11 00:43:40,377 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery HTTP/1.1" 200 None 2026-02-11 00:43:40,897 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-02-11 00:43:41,466 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-02-11 00:43:41,907 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-02-11 00:43:42,333 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-02-11 00:43:42,334 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-11 00:43:42,373 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:43:42,373 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer 2026-02-11 00:43:42,373 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-02-11 00:43:42,375 [ scc.git] DEBUG Check current status 2026-02-11 00:43:42,375 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-11 00:43:42,377 [ scc.git] DEBUG 5e2de43 Merge pull request #510 from joshmoore/issue-509 2026-02-11 00:43:42,377 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-11 00:43:42,416 [ scc.config] DEBUG Found remote.origin.url 2026-02-11 00:43:42,872 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer HTTP/1.1" 200 None 2026-02-11 00:43:43,364 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-02-11 00:43:43,792 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-02-11 00:43:44,229 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-02-11 00:43:44,642 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-02-11 00:43:44,643 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-11 00:43:44,680 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:43:44,681 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr 2026-02-11 00:43:44,681 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-02-11 00:43:44,683 [ scc.git] DEBUG Check current status 2026-02-11 00:43:44,683 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-11 00:43:44,685 [ scc.git] DEBUG 0a557da Bump version: 0.5.3 → 0.5.4.dev0 2026-02-11 00:43:44,685 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-11 00:43:44,724 [ scc.config] DEBUG Found remote.origin.url 2026-02-11 00:43:45,216 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr HTTP/1.1" 200 None 2026-02-11 00:43:45,683 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-02-11 00:43:46,117 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-02-11 00:43:46,543 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-02-11 00:43:46,954 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-02-11 00:43:46,955 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-11 00:43:46,991 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:43:46,992 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata 2026-02-11 00:43:46,992 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-02-11 00:43:46,994 [ scc.git] DEBUG Check current status 2026-02-11 00:43:46,994 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-11 00:43:46,996 [ scc.git] DEBUG 55060a2 Merge pull request #90 from will-moore/pypi_release_action 2026-02-11 00:43:46,996 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-11 00:43:47,033 [ scc.config] DEBUG Found remote.origin.url 2026-02-11 00:43:47,513 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata HTTP/1.1" 200 None 2026-02-11 00:43:47,993 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-02-11 00:43:48,416 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-02-11 00:43:48,897 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-02-11 00:43:49,330 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-02-11 00:43:49,331 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-11 00:43:49,368 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:43:49,369 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade 2026-02-11 00:43:49,369 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-02-11 00:43:49,371 [ scc.git] DEBUG Check current status 2026-02-11 00:43:49,371 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-11 00:43:49,373 [ scc.git] DEBUG fb5ae86 Merge pull request #133 from jburel/build 2026-02-11 00:43:49,373 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-11 00:43:49,411 [ scc.config] DEBUG Found remote.origin.url 2026-02-11 00:43:49,873 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade HTTP/1.1" 200 None 2026-02-11 00:43:50,348 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-02-11 00:43:50,763 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-02-11 00:43:51,197 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-02-11 00:43:51,618 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-02-11 00:43:51,619 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-11 00:43:51,657 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:43:51,658 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools 2026-02-11 00:43:51,658 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-02-11 00:43:51,660 [ scc.git] DEBUG Check current status 2026-02-11 00:43:51,660 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-11 00:43:51,662 [ scc.git] DEBUG eb47378 Merge pull request #15 from jburel/build 2026-02-11 00:43:51,662 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-11 00:43:51,699 [ scc.config] DEBUG Found remote.origin.url 2026-02-11 00:43:52,128 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools HTTP/1.1" 200 None 2026-02-11 00:43:52,599 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-02-11 00:43:53,032 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-02-11 00:43:53,456 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-02-11 00:43:53,895 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-02-11 00:43:53,896 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-11 00:43:53,934 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:43:53,935 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois 2026-02-11 00:43:53,935 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-02-11 00:43:53,937 [ scc.git] DEBUG Check current status 2026-02-11 00:43:53,937 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-11 00:43:53,939 [ scc.git] DEBUG bdfeb5e bump sphinx version 2026-02-11 00:43:53,939 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-11 00:43:53,976 [ scc.config] DEBUG Found remote.origin.url 2026-02-11 00:43:54,445 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois HTTP/1.1" 200 None 2026-02-11 00:43:54,932 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-02-11 00:43:55,342 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-02-11 00:43:55,779 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-02-11 00:43:56,261 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-02-11 00:43:56,262 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-11 00:43:56,298 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:43:56,299 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup 2026-02-11 00:43:56,299 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-02-11 00:43:56,301 [ scc.git] DEBUG Check current status 2026-02-11 00:43:56,301 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-11 00:43:56,303 [ scc.git] DEBUG be76813 Merge pull request #21 from jburel/build 2026-02-11 00:43:56,303 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-11 00:43:56,340 [ scc.config] DEBUG Found remote.origin.url 2026-02-11 00:43:56,808 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup HTTP/1.1" 200 None 2026-02-11 00:43:57,315 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-02-11 00:43:57,767 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-02-11 00:43:58,193 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-02-11 00:43:58,611 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-02-11 00:43:58,612 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-11 00:43:58,648 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:43:58,648 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra 2026-02-11 00:43:58,648 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-02-11 00:43:58,651 [ scc.git] DEBUG Check current status 2026-02-11 00:43:58,651 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-11 00:43:58,653 [ scc.git] DEBUG c8a0015 Merge pull request #84 from joshmoore/fix-port-readme 2026-02-11 00:43:58,653 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-11 00:43:58,690 [ scc.config] DEBUG Found remote.origin.url 2026-02-11 00:43:59,093 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-test-infra HTTP/1.1" 301 198 Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 2026-02-11 00:43:59,095 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 2026-02-11 00:43:59,385 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/111908919 HTTP/1.1" 200 None 2026-02-11 00:43:59,864 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-02-11 00:44:00,284 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-02-11 00:44:00,720 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-02-11 00:44:01,156 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-02-11 00:44:01,157 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-11 00:44:01,194 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:44:01,194 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload 2026-02-11 00:44:01,194 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-02-11 00:44:01,196 [ scc.git] DEBUG Check current status 2026-02-11 00:44:01,196 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-11 00:44:01,198 [ scc.git] DEBUG 100f6ae Merge pull request #13 from jburel/build 2026-02-11 00:44:01,198 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-11 00:44:01,235 [ scc.config] DEBUG Found remote.origin.url 2026-02-11 00:44:01,669 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload HTTP/1.1" 200 None 2026-02-11 00:44:02,141 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-02-11 00:44:02,569 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-02-11 00:44:02,986 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-02-11 00:44:03,397 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-02-11 00:44:03,398 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-11 00:44:03,434 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:44:03,434 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope 2026-02-11 00:44:03,434 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-02-11 00:44:03,436 [ scc.git] DEBUG Check current status 2026-02-11 00:44:03,436 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-11 00:44:03,438 [ scc.git] DEBUG 160d894 Fix display of code 2026-02-11 00:44:03,439 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-11 00:44:03,475 [ scc.config] DEBUG Found remote.origin.url 2026-02-11 00:44:03,930 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope HTTP/1.1" 200 None 2026-02-11 00:44:04,421 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-02-11 00:44:04,853 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-02-11 00:44:05,269 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-02-11 00:44:05,676 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-02-11 00:44:05,677 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-11 00:44:05,714 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:44:05,714 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr 2026-02-11 00:44:05,714 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-02-11 00:44:05,716 [ scc.git] DEBUG Check current status 2026-02-11 00:44:05,716 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-11 00:44:05,718 [ scc.git] DEBUG 4e1e685 Merge pull request #23 from lubianat/patch-1 2026-02-11 00:44:05,719 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-11 00:44:05,758 [ scc.config] DEBUG Found remote.origin.url 2026-02-11 00:44:05,758 [ scc.git] DEBUG Repository configuration: base-branch: main 2026-02-11 00:44:06,244 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr HTTP/1.1" 200 None 2026-02-11 00:44:06,713 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-02-11 00:44:07,130 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-02-11 00:44:07,575 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-02-11 00:44:08,004 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-02-11 00:44:08,005 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-11 00:44:08,040 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:44:08,040 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror 2026-02-11 00:44:08,040 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-02-11 00:44:08,042 [ scc.git] DEBUG Check current status 2026-02-11 00:44:08,042 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-11 00:44:08,045 [ scc.git] DEBUG 70b01ed Merge pull request #24 from jburel/build 2026-02-11 00:44:08,045 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-11 00:44:08,082 [ scc.config] DEBUG Found remote.origin.url 2026-02-11 00:44:08,434 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-weberror HTTP/1.1" 301 197 Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 2026-02-11 00:44:08,435 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 2026-02-11 00:44:08,690 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/38373425 HTTP/1.1" 200 None 2026-02-11 00:44:09,152 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-02-11 00:44:09,594 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-02-11 00:44:10,028 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-02-11 00:44:10,440 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-02-11 00:44:10,441 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-11 00:44:10,478 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:44:10,478 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest 2026-02-11 00:44:10,479 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-02-11 00:44:10,481 [ scc.git] DEBUG Check current status 2026-02-11 00:44:10,481 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-11 00:44:10,483 [ scc.git] DEBUG 5bfef29 Merge pull request #36 from jburel/build 2026-02-11 00:44:10,483 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-11 00:44:10,521 [ scc.config] DEBUG Found remote.origin.url 2026-02-11 00:44:10,856 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-webtest HTTP/1.1" 301 197 Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 2026-02-11 00:44:10,856 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 2026-02-11 00:44:11,171 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/25970383 HTTP/1.1" 200 None 2026-02-11 00:44:11,646 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-02-11 00:44:12,068 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-02-11 00:44:12,513 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-02-11 00:44:12,934 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-02-11 00:44:12,935 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-11 00:44:12,971 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:44:12,972 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway 2026-02-11 00:44:12,972 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-02-11 00:44:12,974 [ scc.git] DEBUG Check current status 2026-02-11 00:44:12,974 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-11 00:44:12,976 [ scc.git] DEBUG 7b5d64d Merge pull request #106 from dominikl/add_examples_2 2026-02-11 00:44:12,976 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-11 00:44:13,013 [ scc.config] DEBUG Found remote.origin.url 2026-02-11 00:44:13,532 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway HTTP/1.1" 200 None 2026-02-11 00:44:14,026 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-02-11 00:44:14,467 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-02-11 00:44:14,904 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-02-11 00:44:15,331 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-02-11 00:44:15,332 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-11 00:44:15,368 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:44:15,368 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts 2026-02-11 00:44:15,368 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-02-11 00:44:15,370 [ scc.git] DEBUG Check current status 2026-02-11 00:44:15,370 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-11 00:44:15,372 [ scc.git] DEBUG 5b4d768 Bump version: 5.10.0 → 5.10.1.dev0 2026-02-11 00:44:15,372 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-11 00:44:15,410 [ scc.config] DEBUG Found remote.origin.url 2026-02-11 00:44:15,410 [ scc.git] DEBUG Repository configuration: base-branch: develop 2026-02-11 00:44:15,748 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/scripts HTTP/1.1" 301 196 Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2026-02-11 00:44:15,749 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2026-02-11 00:44:16,003 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/4865545 HTTP/1.1" 200 None 2026-02-11 00:44:16,498 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-02-11 00:44:17,078 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-02-11 00:44:17,507 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-02-11 00:44:17,947 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-02-11 00:44:17,947 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-11 00:44:17,983 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:44:17,983 [ scc.git] DEBUG Resetting... 2026-02-11 00:44:17,983 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2026-02-11 00:44:17,990 [ scc.git] DEBUG HEAD is now at c64cec4 merge master -Dorg -Snone 2026-02-11 00:44:17,991 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2026-02-11 00:44:18,041 [ scc.git] DEBUG Submodule path 'omero-cli-render': checked out 'ce6e13cfea3157cab0d00fde40f6cc8158946264' 2026-02-11 00:44:18,056 [ scc.git] DEBUG Submodule path 'omero-cli-zarr': checked out '11d35873542022d9638ede115d0dfab4652f8e62' 2026-02-11 00:44:18,086 [ scc.git] DEBUG Submodule path 'omero-figure': checked out '9cc36cde05bde4def7b62b07c2e9ae5f66712e96' 2026-02-11 00:44:18,104 [ scc.git] DEBUG Submodule path 'omero-iviewer': checked out '7a798ceeb3926d049d73788555fb63269a071052' 2026-02-11 00:44:18,118 [ scc.git] DEBUG Submodule path 'omero-metadata': checked out '3cd120cf6f10f71421a4db91fa87baba865c7997' 2026-02-11 00:44:18,140 [ scc.git] DEBUG Submodule path 'omero-test-infra': checked out 'cda3ec65052d6933052c8683d080677c6c33dc73' 2026-02-11 00:44:18,153 [ scc.git] DEBUG Submodule path 'omero-virtual-microscope': checked out 'deab81790f403bef598915b89b5300258b44a743' 2026-02-11 00:44:18,164 [ scc.git] DEBUG Submodule path 'omero-web-zarr': checked out '8f3c31388de8a7c44f18a6f0e20ea41d35fae041' 2026-02-11 00:44:18,188 [ scc.git] DEBUG Submodule path 'scripts': checked out '4b4c755af4ccf8a5e709548d1f8415fab48a4867' 2026-02-11 00:44:18,190 [ scc.git] DEBUG Check current status 2026-02-11 00:44:18,190 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-02-11 00:44:18,193 [ scc.git] DEBUG c64cec4 merge master -Dorg -Snone 2026-02-11 00:44:18,193 [ scc.git] DEBUG Calling 'git submodule status' 2026-02-11 00:44:18,234 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master) 2026-02-11 00:44:18,237 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2026-02-11 00:44:18,240 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c) 2026-02-11 00:44:18,243 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587) 2026-02-11 00:44:18,246 [ scc.git] DEBUG 9cc36cde05bde4def7b62b07c2e9ae5f66712e96 omero-figure (v7.2.1-3-g9cc36cde) 2026-02-11 00:44:18,248 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2026-02-11 00:44:18,251 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2026-02-11 00:44:18,254 [ scc.git] DEBUG 7a798ceeb3926d049d73788555fb63269a071052 omero-iviewer (v0.16.0-14-g7a798ce) 2026-02-11 00:44:18,257 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2026-02-11 00:44:18,259 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c) 2026-02-11 00:44:18,262 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2026-02-11 00:44:18,264 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2026-02-11 00:44:18,267 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2026-02-11 00:44:18,270 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2026-02-11 00:44:18,273 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6) 2026-02-11 00:44:18,275 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2026-02-11 00:44:18,278 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2026-02-11 00:44:18,280 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313) 2026-02-11 00:44:18,283 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2026-02-11 00:44:18,285 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2026-02-11 00:44:18,288 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2026-02-11 00:44:18,291 [ scc.git] DEBUG 4b4c755af4ccf8a5e709548d1f8415fab48a4867 scripts (v5.9.0-1-g4b4c755) 2026-02-11 00:44:18,292 [ scc.merge] INFO Merging Pull Request(s) based on master 2026-02-11 00:44:18,292 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2026-02-11 00:44:18,292 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2026-02-11 00:44:18,292 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2026-02-11 00:44:18,292 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2026-02-11 00:44:18,292 [ scc.merge] INFO Excluding Pull Request(s) without successful status 2026-02-11 00:44:18,292 [ scc.repo] DEBUG ## PRs found: 2026-02-11 00:44:18,595 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/pulls HTTP/1.1" 200 None 2026-02-11 00:44:19,114 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/433 HTTP/1.1" 200 None 2026-02-11 00:44:19,115 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-11 00:44:19,647 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74 HTTP/1.1" 200 None 2026-02-11 00:44:20,317 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:44:20,887 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74 HTTP/1.1" 200 None 2026-02-11 00:44:21,338 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/6fd5dc72efc90d7f749b332dba3f903414852d74?per_page=1 HTTP/1.1" 200 2 2026-02-11 00:44:21,338 [ scc.repo] DEBUG - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2026-02-11 00:44:21,872 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/432 HTTP/1.1" 200 None 2026-02-11 00:44:21,873 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-11 00:44:22,446 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51 HTTP/1.1" 200 None 2026-02-11 00:44:22,933 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:44:23,478 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51 HTTP/1.1" 200 None 2026-02-11 00:44:23,914 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/25bf90a85a7e0945e652f9d78050c8c4860acb51?per_page=1 HTTP/1.1" 200 2 2026-02-11 00:44:23,914 [ scc.repo] DEBUG - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2026-02-11 00:44:24,462 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/429 HTTP/1.1" 200 None 2026-02-11 00:44:24,463 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-11 00:44:25,023 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2 HTTP/1.1" 200 None 2026-02-11 00:44:25,487 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:44:26,055 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2 HTTP/1.1" 200 None 2026-02-11 00:44:26,477 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/3062fb487d55aef3602ecee795b63ccb73d1f8e2?per_page=1 HTTP/1.1" 200 2 2026-02-11 00:44:26,477 [ scc.repo] DEBUG - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2026-02-11 00:44:26,477 [ scc.repo] DEBUG ## Branches found: 2026-02-11 00:44:26,477 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:44:26,477 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:44:26,480 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-02-11 00:44:26,482 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-02-11 00:44:26,482 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-02-11 00:44:26,485 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-02-11 00:44:26,488 [ scc.git] DEBUG Already up to date. 2026-02-11 00:44:26,488 [ scc.git] DEBUG Calling 'git fetch origin pull/429/head' 2026-02-11 00:44:26,765 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-02-11 00:44:26,765 [ scc.git] DEBUG * branch refs/pull/429/head -> FETCH_HEAD 2026-02-11 00:44:26,768 [ scc.git] DEBUG Calling 'git fetch origin pull/432/head' 2026-02-11 00:44:27,018 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-02-11 00:44:27,018 [ scc.git] DEBUG * branch refs/pull/432/head -> FETCH_HEAD 2026-02-11 00:44:27,022 [ scc.git] DEBUG Calling 'git fetch origin pull/433/head' 2026-02-11 00:44:27,274 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-02-11 00:44:27,274 [ scc.git] DEBUG * branch refs/pull/433/head -> FETCH_HEAD 2026-02-11 00:44:27,278 [ scc.git] DEBUG ## Unique users: [] 2026-02-11 00:44:27,278 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:44:27,278 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:44:27,280 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2026-02-11 00:44:27,283 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:44:27,285 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 429 (Bump scripts from `312afbe` to `4b4c755`) 3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2026-02-11 00:44:27,287 [ scc.git] DEBUG Already up to date. 2026-02-11 00:44:27,436 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:44:27,436 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25bf90a85a7e0945e652f9d78050c8c4860acb51' 2026-02-11 00:44:27,438 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:44:27,440 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 432 (Bump omero-figure from `fb316a7` to `9cc36cd`) 25bf90a85a7e0945e652f9d78050c8c4860acb51' 2026-02-11 00:44:27,443 [ scc.git] DEBUG Already up to date. 2026-02-11 00:44:27,957 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:44:27,958 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6fd5dc72efc90d7f749b332dba3f903414852d74' 2026-02-11 00:44:27,960 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:44:27,962 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 433 (Bump omero-iviewer from `b4102d4` to `7a798ce`) 6fd5dc72efc90d7f749b332dba3f903414852d74' 2026-02-11 00:44:27,964 [ scc.git] DEBUG Already up to date. 2026-02-11 00:44:28,360 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:44:28,361 [ scc.git] DEBUG Calling 'git submodule update' 2026-02-11 00:44:28,462 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:44:28,462 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:44:28,464 [ scc.repo] DEBUG ## PRs found: 2026-02-11 00:44:28,796 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/minimal-omero-client/pulls HTTP/1.1" 200 2 2026-02-11 00:44:28,796 [ scc.repo] DEBUG ## Branches found: 2026-02-11 00:44:28,796 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client 2026-02-11 00:44:28,797 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:44:28,797 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:44:28,799 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-02-11 00:44:28,801 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-02-11 00:44:28,801 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-02-11 00:44:28,803 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-02-11 00:44:28,806 [ scc.git] DEBUG Already up to date. 2026-02-11 00:44:28,806 [ scc.git] DEBUG ## Unique users: [] 2026-02-11 00:44:28,806 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:44:28,806 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:44:28,808 [ scc.git] DEBUG Calling 'git submodule update' 2026-02-11 00:44:28,845 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:44:28,845 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:44:28,847 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-11 00:44:28,883 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-02-11 00:44:28,886 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f17695f6c50> has no local changes 2026-02-11 00:44:28,886 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/minimal-omero-client Already up to date. Generated by OMERO-plugins-push#52 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/52/)' 2026-02-11 00:44:28,892 [ scc.git] DEBUG [detached HEAD e247ba5] merge master -Dorg -Ssuccess-only 2026-02-11 00:44:28,892 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:44:28,892 [ scc.repo] DEBUG ## PRs found: 2026-02-11 00:44:29,360 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/pulls HTTP/1.1" 200 None 2026-02-11 00:44:29,924 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/29 HTTP/1.1" 200 None 2026-02-11 00:44:29,925 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-11 00:44:30,498 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4 HTTP/1.1" 200 None 2026-02-11 00:44:31,009 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:44:31,566 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-11 00:44:32,045 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4 HTTP/1.1" 200 None 2026-02-11 00:44:32,483 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/statuses/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4?per_page=1 HTTP/1.1" 200 2 2026-02-11 00:44:32,484 [ scc.repo] DEBUG - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-02-11 00:44:33,065 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/18 HTTP/1.1" 200 None 2026-02-11 00:44:33,570 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/18/comments HTTP/1.1" 200 None 2026-02-11 00:44:33,571 [ scc.repo] DEBUG ## Branches found: 2026-02-11 00:44:33,571 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate 2026-02-11 00:44:33,571 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:44:33,571 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:44:33,574 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-02-11 00:44:33,576 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-02-11 00:44:33,576 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-02-11 00:44:33,578 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-02-11 00:44:33,581 [ scc.git] DEBUG Already up to date. 2026-02-11 00:44:33,581 [ scc.git] DEBUG Calling 'git fetch origin pull/29/head' 2026-02-11 00:44:33,871 [ scc.git] DEBUG From https://github.com/ome/omero-cli-duplicate 2026-02-11 00:44:33,871 [ scc.git] DEBUG * branch refs/pull/29/head -> FETCH_HEAD 2026-02-11 00:44:33,874 [ scc.git] DEBUG ## Unique users: [] 2026-02-11 00:44:33,874 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:44:33,874 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:44:33,877 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4' 2026-02-11 00:44:33,879 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:44:33,881 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 29 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4' 2026-02-11 00:44:33,888 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-11 00:44:33,890 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-02-11 00:44:33,890 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-02-11 00:44:34,045 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:44:34,046 [ scc.git] DEBUG Calling 'git submodule update' 2026-02-11 00:44:34,083 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:44:34,083 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:44:34,085 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-11 00:44:34,120 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-02-11 00:44:34,123 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f1769937d90> has no local changes 2026-02-11 00:44:34,123 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-cli-duplicate Excluded PRs: - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment) Already up to date. Merged PRs: - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#52 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/52/)' 2026-02-11 00:44:34,129 [ scc.git] DEBUG [detached HEAD c0b5027] merge master -Dorg -Ssuccess-only 2026-02-11 00:44:34,129 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:44:34,129 [ scc.repo] DEBUG ## PRs found: 2026-02-11 00:44:34,631 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls HTTP/1.1" 200 None 2026-02-11 00:44:35,128 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/59 HTTP/1.1" 200 None 2026-02-11 00:44:35,599 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/59/comments HTTP/1.1" 200 None 2026-02-11 00:44:36,122 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99 HTTP/1.1" 200 None 2026-02-11 00:44:36,638 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:44:37,141 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-11 00:44:37,613 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99 HTTP/1.1" 200 None 2026-02-11 00:44:38,047 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/statuses/38c5fff61b004cd2efee36b3f5c034d2b8f01c99?per_page=1 HTTP/1.1" 200 2 2026-02-11 00:44:38,047 [ scc.repo] DEBUG - PR 59 will-moore 'Apply settings to Plate' 2026-02-11 00:44:38,708 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/52 HTTP/1.1" 200 None 2026-02-11 00:44:39,168 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/52/comments HTTP/1.1" 200 None 2026-02-11 00:44:39,169 [ scc.repo] DEBUG ## Branches found: 2026-02-11 00:44:39,169 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render 2026-02-11 00:44:39,169 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:44:39,169 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:44:39,172 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-02-11 00:44:39,174 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-02-11 00:44:39,174 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-02-11 00:44:39,177 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-02-11 00:44:39,184 [ scc.git] DEBUG Updating ce6e13c..68b7303 2026-02-11 00:44:39,916 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/74 HTTP/1.1" 200 None 2026-02-11 00:44:40,779 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/75 HTTP/1.1" 200 None 2026-02-11 00:44:41,518 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/71 HTTP/1.1" 200 None 2026-02-11 00:44:42,184 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/69 HTTP/1.1" 200 None 2026-02-11 00:44:42,185 [ scc.git] DEBUG Calling 'git fetch origin pull/59/head' 2026-02-11 00:44:42,708 [ scc.git] DEBUG From https://github.com/ome/omero-cli-render 2026-02-11 00:44:42,708 [ scc.git] DEBUG * branch refs/pull/59/head -> FETCH_HEAD 2026-02-11 00:44:42,712 [ scc.git] DEBUG ## Unique users: [] 2026-02-11 00:44:42,712 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:44:42,712 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:44:42,714 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38c5fff61b004cd2efee36b3f5c034d2b8f01c99' 2026-02-11 00:44:42,717 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:44:42,719 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 59 (Apply settings to Plate) 38c5fff61b004cd2efee36b3f5c034d2b8f01c99' 2026-02-11 00:44:42,728 [ scc.git] DEBUG Auto-merging src/omero_cli_render.py 2026-02-11 00:44:42,729 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-11 00:44:42,731 [ scc.git] DEBUG src/omero_cli_render.py | 170 ++++++++++++++++++++++++++++-------------------- 2026-02-11 00:44:42,731 [ scc.git] DEBUG 1 file changed, 101 insertions(+), 69 deletions(-) 2026-02-11 00:44:42,890 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:44:42,891 [ scc.git] DEBUG Calling 'git submodule update' 2026-02-11 00:44:42,926 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:44:42,926 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:44:42,928 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-11 00:44:42,964 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-02-11 00:44:42,967 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f176969ff90> has no local changes 2026-02-11 00:44:42,967 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-cli-render Excluded PRs: - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft) Updating ce6e13c..68b7303 Previously merged: - PR 74 jburel 'Replace manual changelog by automated GH release step' - PR 75 jburel 'Sort the new channels to ensure settings are set' - PR 71 dominikl 'Escape slash character in image names' - PR 69 dominikl 'Fix help text for impo/export commands' Merged PRs: - PR 59 will-moore 'Apply settings to Plate' Generated by OMERO-plugins-push#52 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/52/)' 2026-02-11 00:44:42,973 [ scc.git] DEBUG [detached HEAD b39c9ff] merge master -Dorg -Ssuccess-only 2026-02-11 00:44:42,973 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:44:42,973 [ scc.repo] DEBUG ## PRs found: 2026-02-11 00:44:43,522 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls HTTP/1.1" 200 None 2026-02-11 00:44:44,193 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/182 HTTP/1.1" 200 None 2026-02-11 00:44:44,672 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/182/comments HTTP/1.1" 200 None 2026-02-11 00:44:45,215 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac HTTP/1.1" 200 None 2026-02-11 00:44:45,726 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:44:46,240 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-11 00:44:46,697 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac HTTP/1.1" 200 None 2026-02-11 00:44:47,145 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac?per_page=1 HTTP/1.1" 200 None 2026-02-11 00:44:47,708 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac HTTP/1.1" 200 None 2026-02-11 00:44:48,167 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac/status HTTP/1.1" 200 None 2026-02-11 00:44:48,168 [ scc.repo] DEBUG - PR 182 will-moore 'Revert "Remove support for Plate import"' 2026-02-11 00:44:48,651 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/181 HTTP/1.1" 200 None 2026-02-11 00:44:49,135 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/181/comments HTTP/1.1" 200 None 2026-02-11 00:44:49,624 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/178 HTTP/1.1" 200 None 2026-02-11 00:44:50,091 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/178/comments HTTP/1.1" 200 None 2026-02-11 00:44:50,615 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae HTTP/1.1" 200 None 2026-02-11 00:44:51,198 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:44:51,684 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-11 00:44:52,213 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae HTTP/1.1" 200 None 2026-02-11 00:44:52,678 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/f99a6a6869bf6259376adaea157f24955c9aa3ae?per_page=1 HTTP/1.1" 200 None 2026-02-11 00:44:53,148 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae HTTP/1.1" 200 None 2026-02-11 00:44:53,621 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae/status HTTP/1.1" 200 None 2026-02-11 00:44:53,622 [ scc.repo] DEBUG - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' 2026-02-11 00:44:54,101 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/174 HTTP/1.1" 200 None 2026-02-11 00:44:54,571 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/174/comments HTTP/1.1" 200 None 2026-02-11 00:44:55,128 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c HTTP/1.1" 200 None 2026-02-11 00:44:55,659 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:44:56,195 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-11 00:44:56,664 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c HTTP/1.1" 200 None 2026-02-11 00:44:57,127 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/e795ce506487fad5c1184c909aaa1dab9a30401c?per_page=1 HTTP/1.1" 200 None 2026-02-11 00:44:57,637 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c HTTP/1.1" 200 None 2026-02-11 00:44:58,073 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c/status HTTP/1.1" 200 None 2026-02-11 00:44:58,074 [ scc.repo] DEBUG - PR 174 will-moore 'Skip wells' 2026-02-11 00:44:58,552 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/172 HTTP/1.1" 200 None 2026-02-11 00:44:59,046 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/172/comments HTTP/1.1" 200 None 2026-02-11 00:44:59,712 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/7e2a9ebeafdebb27335a76d20f61bbde860e1675 HTTP/1.1" 200 None 2026-02-11 00:45:00,242 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/7e2a9ebeafdebb27335a76d20f61bbde860e1675/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:45:00,739 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/7e2a9ebeafdebb27335a76d20f61bbde860e1675/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-11 00:45:01,217 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/7e2a9ebeafdebb27335a76d20f61bbde860e1675 HTTP/1.1" 200 None 2026-02-11 00:45:01,646 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/7e2a9ebeafdebb27335a76d20f61bbde860e1675?per_page=1 HTTP/1.1" 200 None 2026-02-11 00:45:02,152 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/7e2a9ebeafdebb27335a76d20f61bbde860e1675 HTTP/1.1" 200 None 2026-02-11 00:45:02,633 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/7e2a9ebeafdebb27335a76d20f61bbde860e1675/status HTTP/1.1" 200 None 2026-02-11 00:45:02,633 [ scc.repo] DEBUG - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' 2026-02-11 00:45:03,137 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/170 HTTP/1.1" 200 None 2026-02-11 00:45:03,656 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/167 HTTP/1.1" 200 None 2026-02-11 00:45:04,165 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/167/comments HTTP/1.1" 200 None 2026-02-11 00:45:04,649 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/166 HTTP/1.1" 200 None 2026-02-11 00:45:05,138 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/162 HTTP/1.1" 200 None 2026-02-11 00:45:05,663 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/123 HTTP/1.1" 200 None 2026-02-11 00:45:06,188 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/123/comments HTTP/1.1" 200 None 2026-02-11 00:45:06,699 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/256245946/issues/123/comments?page=2 HTTP/1.1" 200 None 2026-02-11 00:45:06,700 [ scc.repo] DEBUG ## Branches found: 2026-02-11 00:45:06,700 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr 2026-02-11 00:45:06,700 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:45:06,700 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:45:06,703 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-02-11 00:45:06,705 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-02-11 00:45:06,705 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-02-11 00:45:06,708 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-02-11 00:45:06,720 [ scc.git] DEBUG Updating 11d3587..9530c10 2026-02-11 00:45:07,402 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/192 HTTP/1.1" 200 None 2026-02-11 00:45:08,214 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/186 HTTP/1.1" 200 None 2026-02-11 00:45:09,010 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/187 HTTP/1.1" 200 None 2026-02-11 00:45:09,730 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/180 HTTP/1.1" 200 None 2026-02-11 00:45:10,588 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/179 HTTP/1.1" 200 None 2026-02-11 00:45:11,264 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/177 HTTP/1.1" 200 None 2026-02-11 00:45:12,007 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/175 HTTP/1.1" 200 None 2026-02-11 00:45:12,826 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/147 HTTP/1.1" 200 None 2026-02-11 00:45:13,570 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/173 HTTP/1.1" 200 None 2026-02-11 00:45:14,387 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/171 HTTP/1.1" 200 None 2026-02-11 00:45:15,148 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/168 HTTP/1.1" 200 None 2026-02-11 00:45:15,149 [ scc.git] DEBUG Calling 'git fetch origin pull/172/head' 2026-02-11 00:45:15,425 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr 2026-02-11 00:45:15,425 [ scc.git] DEBUG * branch refs/pull/172/head -> FETCH_HEAD 2026-02-11 00:45:15,429 [ scc.git] DEBUG Calling 'git fetch origin pull/174/head' 2026-02-11 00:45:15,861 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr 2026-02-11 00:45:15,861 [ scc.git] DEBUG * branch refs/pull/174/head -> FETCH_HEAD 2026-02-11 00:45:15,865 [ scc.git] DEBUG Calling 'git fetch origin pull/178/head' 2026-02-11 00:45:16,496 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr 2026-02-11 00:45:16,496 [ scc.git] DEBUG * branch refs/pull/178/head -> FETCH_HEAD 2026-02-11 00:45:16,500 [ scc.git] DEBUG Calling 'git fetch origin pull/182/head' 2026-02-11 00:45:16,765 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr 2026-02-11 00:45:16,765 [ scc.git] DEBUG * branch refs/pull/182/head -> FETCH_HEAD 2026-02-11 00:45:16,769 [ scc.git] DEBUG ## Unique users: [] 2026-02-11 00:45:16,769 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:45:16,769 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:45:16,771 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...7e2a9ebeafdebb27335a76d20f61bbde860e1675' 2026-02-11 00:45:16,774 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:45:16,777 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 172 (Use zarr v3 and updated ome-zarr-py) 7e2a9ebeafdebb27335a76d20f61bbde860e1675' 2026-02-11 00:45:16,786 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-11 00:45:16,790 [ scc.git] DEBUG .isort.cfg | 2 +- 2026-02-11 00:45:16,790 [ scc.git] DEBUG README.rst | 5 +- 2026-02-11 00:45:16,790 [ scc.git] DEBUG setup.py | 5 +- 2026-02-11 00:45:16,790 [ scc.git] DEBUG src/omero_zarr/__init__.py | 4 -- 2026-02-11 00:45:16,790 [ scc.git] DEBUG src/omero_zarr/cli.py | 18 +++++- 2026-02-11 00:45:16,790 [ scc.git] DEBUG src/omero_zarr/masks.py | 35 +++++------ 2026-02-11 00:45:16,790 [ scc.git] DEBUG src/omero_zarr/raw_pixels.py | 99 +++++++++++++++++++---------- 2026-02-11 00:45:16,790 [ scc.git] DEBUG src/omero_zarr/util.py | 13 ++-- 2026-02-11 00:45:16,791 [ scc.git] DEBUG src/omero_zarr/zarr_import.py | 61 +++++++----------- 2026-02-11 00:45:16,791 [ scc.git] DEBUG test/integration/clitest/test_export.py | 108 +++++++++++++++++++++++++++----- 2026-02-11 00:45:16,791 [ scc.git] DEBUG test/integration/clitest/test_import.py | 9 +++ 2026-02-11 00:45:16,791 [ scc.git] DEBUG 11 files changed, 238 insertions(+), 121 deletions(-) 2026-02-11 00:45:16,943 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:45:16,943 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...e795ce506487fad5c1184c909aaa1dab9a30401c' 2026-02-11 00:45:16,947 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:45:16,949 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 174 (Skip wells) e795ce506487fad5c1184c909aaa1dab9a30401c' 2026-02-11 00:45:17,375 [ scc.git] DEBUG Auto-merging README.rst 2026-02-11 00:45:17,375 [ scc.git] DEBUG Auto-merging src/omero_zarr/cli.py 2026-02-11 00:45:17,375 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/cli.py 2026-02-11 00:45:17,375 [ scc.git] DEBUG Auto-merging src/omero_zarr/masks.py 2026-02-11 00:45:17,375 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/masks.py 2026-02-11 00:45:17,375 [ scc.git] DEBUG Auto-merging src/omero_zarr/raw_pixels.py 2026-02-11 00:45:17,375 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/raw_pixels.py 2026-02-11 00:45:17,375 [ scc.git] DEBUG Auto-merging src/omero_zarr/util.py 2026-02-11 00:45:17,375 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/util.py 2026-02-11 00:45:17,375 [ scc.git] DEBUG Auto-merging test/integration/clitest/test_export.py 2026-02-11 00:45:17,375 [ scc.git] DEBUG CONFLICT (content): Merge conflict in test/integration/clitest/test_export.py 2026-02-11 00:45:17,375 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-02-11 00:45:17,375 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-02-11 00:45:17,378 [ scc.git] DEBUG Calling 'git reset --hard fd9dfd9ac871cce21c320bb0d487bf0f4c27bf87' 2026-02-11 00:45:17,382 [ scc.git] DEBUG HEAD is now at fd9dfd9 merge master -Dorg -Ssuccess-only: PR 172 (Use zarr v3 and updated ome-zarr-py) 2026-02-11 00:45:17,531 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:45:17,532 [ scc.git] DEBUG Calling 'git merge-base 9530c10ba9823fcba6b39139987bf4bcd4a60179 e795ce506487fad5c1184c909aaa1dab9a30401c' 2026-02-11 00:45:17,535 [ scc.git] DEBUG Calling 'git diff --name-only 37ea7000309b4f8b87c5122c138fb59b17ecf86b..9530c10ba9823fcba6b39139987bf4bcd4a60179' 2026-02-11 00:45:17,537 [ scc.git] INFO - PR 174 will-moore 'Skip wells' Conflicting PR. Removed from build [OMERO-plugins-push#52](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/52/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/52/consoleText) for more details. Possible conflicts: - PR #172 will-moore 'Use zarr v3 and updated ome-zarr-py' - src/omero_zarr/raw_pixels.py - src/omero_zarr/masks.py - src/omero_zarr/cli.py - src/omero_zarr/util.py - test/integration/clitest/test_export.py --conflicts 2026-02-11 00:45:17,539 [ scc.config] DEBUG Found github.token 2026-02-11 00:45:17,539 [ scc.git] DEBUG Not adding comment to issue #174, already --conflicts. 2026-02-11 00:45:17,539 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...f99a6a6869bf6259376adaea157f24955c9aa3ae' 2026-02-11 00:45:17,543 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:45:17,545 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 178 (Fix export of masks with multi-theC as multi-channel labels) f99a6a6869bf6259376adaea157f24955c9aa3ae' 2026-02-11 00:45:17,664 [ scc.git] DEBUG Auto-merging src/omero_zarr/masks.py 2026-02-11 00:45:17,664 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/masks.py 2026-02-11 00:45:17,664 [ scc.git] DEBUG Auto-merging test/integration/clitest/test_export.py 2026-02-11 00:45:17,664 [ scc.git] DEBUG CONFLICT (content): Merge conflict in test/integration/clitest/test_export.py 2026-02-11 00:45:17,664 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-02-11 00:45:17,664 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-02-11 00:45:17,667 [ scc.git] DEBUG Calling 'git reset --hard fd9dfd9ac871cce21c320bb0d487bf0f4c27bf87' 2026-02-11 00:45:17,671 [ scc.git] DEBUG HEAD is now at fd9dfd9 merge master -Dorg -Ssuccess-only: PR 172 (Use zarr v3 and updated ome-zarr-py) 2026-02-11 00:45:17,941 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:45:17,941 [ scc.git] DEBUG Calling 'git merge-base 9530c10ba9823fcba6b39139987bf4bcd4a60179 f99a6a6869bf6259376adaea157f24955c9aa3ae' 2026-02-11 00:45:17,944 [ scc.git] DEBUG Calling 'git diff --name-only 9530c10ba9823fcba6b39139987bf4bcd4a60179..9530c10ba9823fcba6b39139987bf4bcd4a60179' 2026-02-11 00:45:17,946 [ scc.git] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' Conflicting PR. Removed from build [OMERO-plugins-push#52](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/52/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/52/consoleText) for more details. Possible conflicts: - PR #172 will-moore 'Use zarr v3 and updated ome-zarr-py' - src/omero_zarr/masks.py - test/integration/clitest/test_export.py - PR #174 will-moore 'Skip wells' - src/omero_zarr/masks.py - test/integration/clitest/test_export.py --conflicts 2026-02-11 00:45:17,948 [ scc.config] DEBUG Found github.token 2026-02-11 00:45:17,948 [ scc.git] DEBUG Not adding comment to issue #178, already --conflicts. 2026-02-11 00:45:17,948 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac' 2026-02-11 00:45:17,952 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:45:17,954 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 182 (Revert "Remove support for Plate import") cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac' 2026-02-11 00:45:18,122 [ scc.git] DEBUG Auto-merging src/omero_zarr/cli.py 2026-02-11 00:45:18,123 [ scc.git] DEBUG Auto-merging src/omero_zarr/zarr_import.py 2026-02-11 00:45:18,123 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/zarr_import.py 2026-02-11 00:45:18,123 [ scc.git] DEBUG Auto-merging test/integration/clitest/test_import.py 2026-02-11 00:45:18,123 [ scc.git] DEBUG CONFLICT (content): Merge conflict in test/integration/clitest/test_import.py 2026-02-11 00:45:18,123 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-02-11 00:45:18,123 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-02-11 00:45:18,125 [ scc.git] DEBUG Calling 'git reset --hard fd9dfd9ac871cce21c320bb0d487bf0f4c27bf87' 2026-02-11 00:45:18,129 [ scc.git] DEBUG HEAD is now at fd9dfd9 merge master -Dorg -Ssuccess-only: PR 172 (Use zarr v3 and updated ome-zarr-py) 2026-02-11 00:45:18,340 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:45:18,341 [ scc.git] DEBUG Calling 'git merge-base 9530c10ba9823fcba6b39139987bf4bcd4a60179 cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac' 2026-02-11 00:45:18,344 [ scc.git] DEBUG Calling 'git diff --name-only 37ea7000309b4f8b87c5122c138fb59b17ecf86b..9530c10ba9823fcba6b39139987bf4bcd4a60179' 2026-02-11 00:45:18,346 [ scc.git] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"' Conflicting PR. Removed from build [OMERO-plugins-push#52](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/52/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/52/consoleText) for more details. Possible conflicts: - PR #172 will-moore 'Use zarr v3 and updated ome-zarr-py' - test/integration/clitest/test_import.py - src/omero_zarr/zarr_import.py - Upstream changes - test/integration/clitest/test_import.py - src/omero_zarr/zarr_import.py --conflicts 2026-02-11 00:45:18,348 [ scc.config] DEBUG Found github.token 2026-02-11 00:45:18,348 [ scc.git] DEBUG Not adding comment to issue #182, already --conflicts. 2026-02-11 00:45:18,348 [ scc.git] DEBUG Calling 'git submodule update' 2026-02-11 00:45:18,385 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:45:18,385 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:45:18,387 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-11 00:45:18,424 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-02-11 00:45:18,428 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f17696865d0> has no local changes 2026-02-11 00:45:18,428 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-cli-zarr Excluded PRs: - PR 181 will-moore 'Add labels support for import' (exclude comment) - PR 170 will-moore 'Use ome zarr models py' (stage: draft) - PR 167 dominikl 'Add extinfo command' (stage: draft) - PR 166 will-moore 'Downsample scale option' (stage: draft) - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment) Updating 11d3587..9530c10 Previously merged: - PR 192 jburel 'Set Omero pixel size' - PR 186 jburel 'Create release from tag' - PR 187 dominikl 'Fix target-by-name option' - PR 180 will-moore 'Import command' - PR 179 will-moore 'Changelog 0.6.0' - PR 177 jburel 'Replace fromstring by frombuffer' - PR 175 will-moore 'Pin ome-zarr-py <0.12.0' - PR 147 will-moore 'Name option' - PR 173 will-moore 'Add test_export_plate_polygons()' - PR 171 will-moore 'Initial addition of integration tests' - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' Conflicting PRs (not included): - PR 174 will-moore 'Skip wells' - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' - PR 182 will-moore 'Revert "Remove support for Plate import"' Generated by OMERO-plugins-push#52 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/52/)' 2026-02-11 00:45:18,434 [ scc.git] DEBUG [detached HEAD ce853ba] merge master -Dorg -Ssuccess-only 2026-02-11 00:45:18,435 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:45:18,435 [ scc.repo] DEBUG ## PRs found: 2026-02-11 00:45:19,013 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls HTTP/1.1" 200 None 2026-02-11 00:45:19,521 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/667 HTTP/1.1" 200 None 2026-02-11 00:45:20,035 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/667/comments HTTP/1.1" 200 None 2026-02-11 00:45:20,667 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/317160c08a2bdc467f7867954ec7b633d4e8f5cd HTTP/1.1" 200 None 2026-02-11 00:45:21,167 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/317160c08a2bdc467f7867954ec7b633d4e8f5cd/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:45:21,657 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/317160c08a2bdc467f7867954ec7b633d4e8f5cd/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-11 00:45:22,153 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/317160c08a2bdc467f7867954ec7b633d4e8f5cd HTTP/1.1" 200 None 2026-02-11 00:45:22,595 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/317160c08a2bdc467f7867954ec7b633d4e8f5cd?per_page=1 HTTP/1.1" 200 2 2026-02-11 00:45:22,595 [ scc.repo] DEBUG - PR 667 Tom-TBT 'Label suggestion interface' 2026-02-11 00:45:23,116 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/666 HTTP/1.1" 200 None 2026-02-11 00:45:23,607 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/b9ab0e6c6571d1eb2732ff143d5d35f8b4b21d2a HTTP/1.1" 200 None 2026-02-11 00:45:24,098 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/b9ab0e6c6571d1eb2732ff143d5d35f8b4b21d2a/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:45:24,611 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/b9ab0e6c6571d1eb2732ff143d5d35f8b4b21d2a/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-11 00:45:25,069 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/b9ab0e6c6571d1eb2732ff143d5d35f8b4b21d2a HTTP/1.1" 200 None 2026-02-11 00:45:25,664 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/b9ab0e6c6571d1eb2732ff143d5d35f8b4b21d2a?per_page=1 HTTP/1.1" 200 2 2026-02-11 00:45:25,664 [ scc.repo] DEBUG - PR 666 will-moore 'Standalone app' 2026-02-11 00:45:26,345 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/665 HTTP/1.1" 200 None 2026-02-11 00:45:26,848 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/665/comments HTTP/1.1" 200 None 2026-02-11 00:45:27,392 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/bdf45b550f4528d17eba292491bbb620ad49022b HTTP/1.1" 200 None 2026-02-11 00:45:27,898 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/bdf45b550f4528d17eba292491bbb620ad49022b/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:45:28,376 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/bdf45b550f4528d17eba292491bbb620ad49022b/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-11 00:45:28,837 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/bdf45b550f4528d17eba292491bbb620ad49022b HTTP/1.1" 200 None 2026-02-11 00:45:29,277 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/bdf45b550f4528d17eba292491bbb620ad49022b?per_page=1 HTTP/1.1" 200 2 2026-02-11 00:45:29,278 [ scc.repo] DEBUG - PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID' 2026-02-11 00:45:29,795 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/664 HTTP/1.1" 200 None 2026-02-11 00:45:30,264 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/664/comments HTTP/1.1" 200 None 2026-02-11 00:45:30,265 [ scc.repo] DEBUG # ... Include label: include 2026-02-11 00:45:30,780 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/ef2d52de60235379f42877477aa2088551610bea HTTP/1.1" 200 None 2026-02-11 00:45:31,422 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/ef2d52de60235379f42877477aa2088551610bea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:45:31,919 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/ef2d52de60235379f42877477aa2088551610bea/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-11 00:45:32,388 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/ef2d52de60235379f42877477aa2088551610bea HTTP/1.1" 200 None 2026-02-11 00:45:32,807 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/ef2d52de60235379f42877477aa2088551610bea?per_page=1 HTTP/1.1" 200 2 2026-02-11 00:45:32,808 [ scc.repo] DEBUG - PR 664 Nirkan 'Handle many channels ' 2026-02-11 00:45:33,325 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/663 HTTP/1.1" 200 None 2026-02-11 00:45:33,809 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/663/comments HTTP/1.1" 200 None 2026-02-11 00:45:34,319 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/03062bc197e09e7cfcefd73bd86fdb8530cfa819 HTTP/1.1" 200 None 2026-02-11 00:45:34,834 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/03062bc197e09e7cfcefd73bd86fdb8530cfa819/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:45:35,493 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/03062bc197e09e7cfcefd73bd86fdb8530cfa819/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-11 00:45:35,924 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/03062bc197e09e7cfcefd73bd86fdb8530cfa819 HTTP/1.1" 200 None 2026-02-11 00:45:36,352 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/03062bc197e09e7cfcefd73bd86fdb8530cfa819?per_page=1 HTTP/1.1" 200 2 2026-02-11 00:45:36,353 [ scc.repo] DEBUG - PR 663 will-moore 'Zarr' 2026-02-11 00:45:36,851 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/662 HTTP/1.1" 200 None 2026-02-11 00:45:37,304 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/662/comments HTTP/1.1" 200 None 2026-02-11 00:45:37,850 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/21baa4e8ba004395bd7a27d520edaa2ed4a540ac HTTP/1.1" 200 None 2026-02-11 00:45:38,333 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/21baa4e8ba004395bd7a27d520edaa2ed4a540ac/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:45:38,813 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/21baa4e8ba004395bd7a27d520edaa2ed4a540ac/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-11 00:45:39,274 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/21baa4e8ba004395bd7a27d520edaa2ed4a540ac HTTP/1.1" 200 None 2026-02-11 00:45:39,711 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/21baa4e8ba004395bd7a27d520edaa2ed4a540ac?per_page=1 HTTP/1.1" 200 2 2026-02-11 00:45:39,711 [ scc.repo] DEBUG - PR 662 will-moore 'Export script runnable without OMERO' 2026-02-11 00:45:40,237 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/656 HTTP/1.1" 200 None 2026-02-11 00:45:40,866 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/656/comments HTTP/1.1" 200 None 2026-02-11 00:45:41,539 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/b6cb152f9484c3a0886812ad5c791c580ee456f6 HTTP/1.1" 200 None 2026-02-11 00:45:42,025 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/b6cb152f9484c3a0886812ad5c791c580ee456f6/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:45:42,531 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/b6cb152f9484c3a0886812ad5c791c580ee456f6/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-11 00:45:43,054 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/b6cb152f9484c3a0886812ad5c791c580ee456f6 HTTP/1.1" 200 None 2026-02-11 00:45:43,477 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/b6cb152f9484c3a0886812ad5c791c580ee456f6?per_page=1 HTTP/1.1" 200 2 2026-02-11 00:45:43,478 [ scc.repo] DEBUG - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO' 2026-02-11 00:45:43,975 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/654 HTTP/1.1" 200 None 2026-02-11 00:45:44,439 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/654/comments HTTP/1.1" 200 None 2026-02-11 00:45:44,979 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/fe57b6f9be1a011d62d0f89e8947c103d6e802c6 HTTP/1.1" 200 None 2026-02-11 00:45:45,632 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/fe57b6f9be1a011d62d0f89e8947c103d6e802c6/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:45:46,164 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/fe57b6f9be1a011d62d0f89e8947c103d6e802c6/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-11 00:45:46,687 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/fe57b6f9be1a011d62d0f89e8947c103d6e802c6 HTTP/1.1" 200 None 2026-02-11 00:45:47,109 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/fe57b6f9be1a011d62d0f89e8947c103d6e802c6?per_page=1 HTTP/1.1" 200 2 2026-02-11 00:45:47,109 [ scc.repo] DEBUG - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes' 2026-02-11 00:45:47,610 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/652 HTTP/1.1" 200 None 2026-02-11 00:45:48,058 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/652/comments HTTP/1.1" 200 None 2026-02-11 00:45:48,059 [ scc.repo] DEBUG # ... Include label: include 2026-02-11 00:45:48,583 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/e4dd3031a6f8b0295d88c5a27d510e2ead252234 HTTP/1.1" 200 None 2026-02-11 00:45:49,086 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/e4dd3031a6f8b0295d88c5a27d510e2ead252234/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:45:49,610 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/e4dd3031a6f8b0295d88c5a27d510e2ead252234/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-11 00:45:50,133 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/e4dd3031a6f8b0295d88c5a27d510e2ead252234 HTTP/1.1" 200 None 2026-02-11 00:45:50,564 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/e4dd3031a6f8b0295d88c5a27d510e2ead252234?per_page=1 HTTP/1.1" 200 2 2026-02-11 00:45:50,564 [ scc.repo] DEBUG - PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 ' 2026-02-11 00:45:51,034 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/641 HTTP/1.1" 200 None 2026-02-11 00:45:51,670 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/641/comments HTTP/1.1" 200 None 2026-02-11 00:45:51,671 [ scc.repo] DEBUG ## Branches found: 2026-02-11 00:45:51,671 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure 2026-02-11 00:45:51,671 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:45:51,671 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:45:51,674 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-02-11 00:45:51,676 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-02-11 00:45:51,676 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-02-11 00:45:51,680 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-02-11 00:45:51,717 [ scc.git] DEBUG Updating 9cc36cde..e241dc01 2026-02-11 00:45:52,392 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/648 HTTP/1.1" 200 None 2026-02-11 00:45:53,270 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/661 HTTP/1.1" 200 None 2026-02-11 00:45:53,933 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/649 HTTP/1.1" 200 None 2026-02-11 00:45:54,732 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/657 HTTP/1.1" 200 None 2026-02-11 00:45:55,656 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/637 HTTP/1.1" 200 None 2026-02-11 00:45:56,508 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/600 HTTP/1.1" 200 None 2026-02-11 00:45:57,213 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/653 HTTP/1.1" 200 None 2026-02-11 00:45:58,030 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/651 HTTP/1.1" 200 None 2026-02-11 00:45:58,806 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/650 HTTP/1.1" 200 None 2026-02-11 00:45:59,588 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/647 HTTP/1.1" 200 None 2026-02-11 00:46:00,346 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/610 HTTP/1.1" 200 None 2026-02-11 00:46:01,103 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/644 HTTP/1.1" 200 None 2026-02-11 00:46:01,857 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/646 HTTP/1.1" 200 None 2026-02-11 00:46:02,544 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/612 HTTP/1.1" 200 None 2026-02-11 00:46:03,300 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/630 HTTP/1.1" 200 None 2026-02-11 00:46:04,013 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/616 HTTP/1.1" 200 None 2026-02-11 00:46:04,883 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/605 HTTP/1.1" 200 None 2026-02-11 00:46:05,680 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/638 HTTP/1.1" 200 None 2026-02-11 00:46:06,424 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/633 HTTP/1.1" 200 None 2026-02-11 00:46:07,085 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/635 HTTP/1.1" 200 None 2026-02-11 00:46:07,851 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/623 HTTP/1.1" 200 None 2026-02-11 00:46:08,567 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/631 HTTP/1.1" 200 None 2026-02-11 00:46:08,568 [ scc.git] DEBUG Calling 'git fetch origin pull/652/head' 2026-02-11 00:46:09,032 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2026-02-11 00:46:09,032 [ scc.git] DEBUG * branch refs/pull/652/head -> FETCH_HEAD 2026-02-11 00:46:09,036 [ scc.git] DEBUG Calling 'git fetch origin pull/654/head' 2026-02-11 00:46:09,585 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2026-02-11 00:46:09,585 [ scc.git] DEBUG * branch refs/pull/654/head -> FETCH_HEAD 2026-02-11 00:46:09,588 [ scc.git] DEBUG Calling 'git fetch origin pull/656/head' 2026-02-11 00:46:10,335 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2026-02-11 00:46:10,335 [ scc.git] DEBUG * branch refs/pull/656/head -> FETCH_HEAD 2026-02-11 00:46:10,340 [ scc.git] DEBUG Calling 'git fetch origin pull/662/head' 2026-02-11 00:46:12,329 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2026-02-11 00:46:12,329 [ scc.git] DEBUG * branch refs/pull/662/head -> FETCH_HEAD 2026-02-11 00:46:12,333 [ scc.git] DEBUG Calling 'git fetch origin pull/663/head' 2026-02-11 00:46:12,650 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2026-02-11 00:46:12,650 [ scc.git] DEBUG * branch refs/pull/663/head -> FETCH_HEAD 2026-02-11 00:46:12,654 [ scc.git] DEBUG Calling 'git fetch origin pull/664/head' 2026-02-11 00:46:13,594 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2026-02-11 00:46:13,594 [ scc.git] DEBUG * branch refs/pull/664/head -> FETCH_HEAD 2026-02-11 00:46:13,599 [ scc.git] DEBUG Calling 'git fetch origin pull/665/head' 2026-02-11 00:46:14,604 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2026-02-11 00:46:14,604 [ scc.git] DEBUG * branch refs/pull/665/head -> FETCH_HEAD 2026-02-11 00:46:14,608 [ scc.git] DEBUG Calling 'git fetch origin pull/666/head' 2026-02-11 00:46:15,079 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2026-02-11 00:46:15,079 [ scc.git] DEBUG * branch refs/pull/666/head -> FETCH_HEAD 2026-02-11 00:46:15,081 [ scc.git] DEBUG Calling 'git fetch origin pull/667/head' 2026-02-11 00:46:15,339 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2026-02-11 00:46:15,339 [ scc.git] DEBUG * branch refs/pull/667/head -> FETCH_HEAD 2026-02-11 00:46:15,343 [ scc.git] DEBUG ## Unique users: [] 2026-02-11 00:46:15,343 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:46:15,343 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:46:15,345 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...e4dd3031a6f8b0295d88c5a27d510e2ead252234' 2026-02-11 00:46:15,353 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:46:15,355 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 652 (Add export option for PNG (72 dpi), fixes #394 ) e4dd3031a6f8b0295d88c5a27d510e2ead252234' 2026-02-11 00:46:15,626 [ scc.git] DEBUG Auto-merging omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 2026-02-11 00:46:15,626 [ scc.git] DEBUG Auto-merging src/index.html 2026-02-11 00:46:15,626 [ scc.git] DEBUG Auto-merging src/js/views/figure_view.js 2026-02-11 00:46:15,626 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-11 00:46:15,631 [ scc.git] DEBUG .../scripts/omero/figure_scripts/Figure_To_Pdf.py | 163 ++++++++++++++++++++- 2026-02-11 00:46:15,631 [ scc.git] DEBUG src/index.html | 11 ++ 2026-02-11 00:46:15,631 [ scc.git] DEBUG src/js/views/figure_view.js | 1 + 2026-02-11 00:46:15,631 [ scc.git] DEBUG 3 files changed, 172 insertions(+), 3 deletions(-) 2026-02-11 00:46:15,794 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:46:15,795 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...fe57b6f9be1a011d62d0f89e8947c103d6e802c6' 2026-02-11 00:46:15,799 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:46:15,801 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 654 (Refresh metadata button to reload channel names, pixel sizes) fe57b6f9be1a011d62d0f89e8947c103d6e802c6' 2026-02-11 00:46:15,962 [ scc.git] DEBUG Auto-merging src/index.html 2026-02-11 00:46:15,962 [ scc.git] DEBUG Auto-merging src/js/views/figure_view.js 2026-02-11 00:46:15,963 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-11 00:46:15,968 [ scc.git] DEBUG src/index.html | 5 ++ 2026-02-11 00:46:15,968 [ scc.git] DEBUG src/js/models/figure_model.js | 111 ++++++++++++++++++++++++++++++++++++++---- 2026-02-11 00:46:15,968 [ scc.git] DEBUG src/js/models/panel_model.js | 33 ++++++++++--- 2026-02-11 00:46:15,968 [ scc.git] DEBUG src/js/views/figure_view.js | 7 +++ 2026-02-11 00:46:15,968 [ scc.git] DEBUG 4 files changed, 140 insertions(+), 16 deletions(-) 2026-02-11 00:46:16,199 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:46:16,199 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6cb152f9484c3a0886812ad5c791c580ee456f6' 2026-02-11 00:46:16,205 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:46:16,207 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 656 (Option to add roi comment when adding ROI from OMERO) b6cb152f9484c3a0886812ad5c791c580ee456f6' 2026-02-11 00:46:16,436 [ scc.git] DEBUG Auto-merging src/js/shape_editor/shape_manager.js 2026-02-11 00:46:16,437 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-11 00:46:16,441 [ scc.git] DEBUG src/js/shape_editor/shape_manager.js | 3 +- 2026-02-11 00:46:16,441 [ scc.git] DEBUG src/js/views/roi_loader_view.js | 74 +++++++++++++++------- 2026-02-11 00:46:16,441 [ scc.git] DEBUG .../modal_dialogs/roi_modal_roi.template.html | 6 ++ 2026-02-11 00:46:16,441 [ scc.git] DEBUG .../modal_dialogs/roi_modal_shape.template.html | 5 ++ 2026-02-11 00:46:16,441 [ scc.git] DEBUG src/templates/shapes/shape_sidebar.template.html | 7 +- 2026-02-11 00:46:16,441 [ scc.git] DEBUG 5 files changed, 71 insertions(+), 24 deletions(-) 2026-02-11 00:46:16,623 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:46:16,624 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...21baa4e8ba004395bd7a27d520edaa2ed4a540ac' 2026-02-11 00:46:16,629 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:46:16,631 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 662 (Export script runnable without OMERO) 21baa4e8ba004395bd7a27d520edaa2ed4a540ac' 2026-02-11 00:46:16,909 [ scc.git] DEBUG Auto-merging omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 2026-02-11 00:46:16,910 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-11 00:46:16,915 [ scc.git] DEBUG .../scripts/omero/figure_scripts/Figure_To_Pdf.py | 594 +++++++++++++++------ 2026-02-11 00:46:16,915 [ scc.git] DEBUG .../scripts/omero/figure_scripts/pilfonts/B24.pbm | Bin 0 -> 8441 bytes 2026-02-11 00:46:16,915 [ scc.git] DEBUG .../scripts/omero/figure_scripts/pilfonts/B24.pil | Bin 0 -> 5143 bytes 2026-02-11 00:46:16,915 [ scc.git] DEBUG .../omero/figure_scripts/pilfonts/FreeSans.ttf | Bin 0 -> 568896 bytes 2026-02-11 00:46:16,915 [ scc.git] DEBUG .../omero/figure_scripts/pilfonts/FreeSansBold.ttf | Bin 0 -> 359272 bytes 2026-02-11 00:46:16,915 [ scc.git] DEBUG .../pilfonts/FreeSansBoldOblique.ttf | Bin 0 -> 301188 bytes 2026-02-11 00:46:16,915 [ scc.git] DEBUG .../figure_scripts/pilfonts/FreeSansOblique.ttf | Bin 0 -> 441432 bytes 2026-02-11 00:46:16,915 [ scc.git] DEBUG 7 files changed, 434 insertions(+), 160 deletions(-) 2026-02-11 00:46:16,916 [ scc.git] DEBUG create mode 100644 omero_figure/scripts/omero/figure_scripts/pilfonts/B24.pbm 2026-02-11 00:46:16,916 [ scc.git] DEBUG create mode 100644 omero_figure/scripts/omero/figure_scripts/pilfonts/B24.pil 2026-02-11 00:46:16,916 [ scc.git] DEBUG create mode 100644 omero_figure/scripts/omero/figure_scripts/pilfonts/FreeSans.ttf 2026-02-11 00:46:16,916 [ scc.git] DEBUG create mode 100755 omero_figure/scripts/omero/figure_scripts/pilfonts/FreeSansBold.ttf 2026-02-11 00:46:16,916 [ scc.git] DEBUG create mode 100755 omero_figure/scripts/omero/figure_scripts/pilfonts/FreeSansBoldOblique.ttf 2026-02-11 00:46:16,916 [ scc.git] DEBUG create mode 100755 omero_figure/scripts/omero/figure_scripts/pilfonts/FreeSansOblique.ttf 2026-02-11 00:46:17,070 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:46:17,071 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...03062bc197e09e7cfcefd73bd86fdb8530cfa819' 2026-02-11 00:46:17,076 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:46:17,079 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 663 (Zarr) 03062bc197e09e7cfcefd73bd86fdb8530cfa819' 2026-02-11 00:46:17,206 [ scc.git] DEBUG Auto-merging omero_figure/views.py 2026-02-11 00:46:17,206 [ scc.git] DEBUG Auto-merging src/js/models/figure_model.js 2026-02-11 00:46:17,206 [ scc.git] DEBUG Auto-merging src/js/models/panel_model.js 2026-02-11 00:46:17,206 [ scc.git] DEBUG Auto-merging src/js/views/modal_views.js 2026-02-11 00:46:17,206 [ scc.git] DEBUG Auto-merging src/js/views/panel_view.js 2026-02-11 00:46:17,207 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-11 00:46:17,214 [ scc.git] DEBUG omero_figure/views.py | 11 +- 2026-02-11 00:46:17,214 [ scc.git] DEBUG package-lock.json | 72 ++- 2026-02-11 00:46:17,214 [ scc.git] DEBUG package.json | 4 +- 2026-02-11 00:46:17,214 [ scc.git] DEBUG src/js/models/figure_model.js | 104 ++++- 2026-02-11 00:46:17,214 [ scc.git] DEBUG src/js/models/panel_model.js | 36 +- 2026-02-11 00:46:17,214 [ scc.git] DEBUG src/js/models/zarr_utils.js | 483 +++++++++++++++++++++ 2026-02-11 00:46:17,214 [ scc.git] DEBUG src/js/views/channel_slider_view.js | 3 + 2026-02-11 00:46:17,214 [ scc.git] DEBUG src/js/views/chgrp_modal_view.js | 10 +- 2026-02-11 00:46:17,214 [ scc.git] DEBUG src/js/views/crop_modal_view.js | 12 +- 2026-02-11 00:46:17,214 [ scc.git] DEBUG src/js/views/info_panel_view.js | 37 +- 2026-02-11 00:46:17,214 [ scc.git] DEBUG src/js/views/labels_from_maps_modal.js | 10 +- 2026-02-11 00:46:17,215 [ scc.git] DEBUG src/js/views/lutpicker.js | 2 +- 2026-02-11 00:46:17,215 [ scc.git] DEBUG src/js/views/modal_views.js | 33 +- 2026-02-11 00:46:17,215 [ scc.git] DEBUG src/js/views/panel_view.js | 9 +- 2026-02-11 00:46:17,215 [ scc.git] DEBUG src/js/views/right_panel_view.js | 11 +- 2026-02-11 00:46:17,215 [ scc.git] DEBUG src/js/views/roi_modal_view.js | 49 +-- 2026-02-11 00:46:17,215 [ scc.git] DEBUG src/js/views/util.js | 48 +- 2026-02-11 00:46:17,215 [ scc.git] DEBUG src/templates/figure_panel.template.html | 2 +- 2026-02-11 00:46:17,215 [ scc.git] DEBUG src/templates/info_panel.template.html | 7 + 2026-02-11 00:46:17,215 [ scc.git] DEBUG .../modal_dialogs/crop_modal_roi.template.html | 3 +- 2026-02-11 00:46:17,215 [ scc.git] DEBUG src/templates/viewport_inner.template.html | 3 +- 2026-02-11 00:46:17,215 [ scc.git] DEBUG src/test.html | 25 ++ 2026-02-11 00:46:17,215 [ scc.git] DEBUG 22 files changed, 832 insertions(+), 142 deletions(-) 2026-02-11 00:46:17,215 [ scc.git] DEBUG create mode 100644 src/js/models/zarr_utils.js 2026-02-11 00:46:17,215 [ scc.git] DEBUG create mode 100644 src/test.html 2026-02-11 00:46:17,477 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:46:17,477 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...ef2d52de60235379f42877477aa2088551610bea' 2026-02-11 00:46:17,483 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:46:17,485 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 664 (Handle many channels ) ef2d52de60235379f42877477aa2088551610bea' 2026-02-11 00:46:17,813 [ scc.git] DEBUG Auto-merging omero_figure/views.py 2026-02-11 00:46:17,813 [ scc.git] DEBUG Auto-merging src/index.html 2026-02-11 00:46:17,813 [ scc.git] DEBUG Auto-merging src/js/models/panel_model.js 2026-02-11 00:46:17,813 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/js/models/panel_model.js 2026-02-11 00:46:17,813 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-02-11 00:46:17,814 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-02-11 00:46:17,819 [ scc.git] DEBUG Calling 'git reset --hard 1d31c81310cab6b46e51d9b3260e08cfac184233' 2026-02-11 00:46:17,828 [ scc.git] DEBUG HEAD is now at 1d31c813 merge master -Dorg -Ssuccess-only: PR 663 (Zarr) 2026-02-11 00:46:17,984 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:46:17,985 [ scc.git] DEBUG Calling 'git merge-base e241dc01b21d8800b6e34e087cbf7099046f68e6 ef2d52de60235379f42877477aa2088551610bea' 2026-02-11 00:46:17,989 [ scc.git] DEBUG Calling 'git diff --name-only b79d638b95385463319f73afc484cf4a1ee3ba13..e241dc01b21d8800b6e34e087cbf7099046f68e6' 2026-02-11 00:46:17,992 [ scc.git] INFO - PR 664 Nirkan 'Handle many channels ' Conflicting PR. Removed from build [OMERO-plugins-push#52](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/52/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/52/consoleText) for more details. Possible conflicts: - PR #654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes' - src/js/models/panel_model.js - PR #663 will-moore 'Zarr' - src/js/models/panel_model.js - Upstream changes - src/js/models/panel_model.js --conflicts 2026-02-11 00:46:17,994 [ scc.config] DEBUG Found github.token 2026-02-11 00:46:17,994 [ scc.git] DEBUG Not adding comment to issue #664, already --conflicts. 2026-02-11 00:46:17,994 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...bdf45b550f4528d17eba292491bbb620ad49022b' 2026-02-11 00:46:18,000 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:46:18,002 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 665 (Ensure projection parameters are within bounds in loadJSON and setID) bdf45b550f4528d17eba292491bbb620ad49022b' 2026-02-11 00:46:18,210 [ scc.git] DEBUG Auto-merging src/js/models/figure_model.js 2026-02-11 00:46:18,210 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/js/models/figure_model.js 2026-02-11 00:46:18,210 [ scc.git] DEBUG Auto-merging src/js/models/panel_model.js 2026-02-11 00:46:18,210 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/js/models/panel_model.js 2026-02-11 00:46:18,210 [ scc.git] DEBUG Auto-merging src/js/views/util.js 2026-02-11 00:46:18,210 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-02-11 00:46:18,210 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-02-11 00:46:18,213 [ scc.git] DEBUG Calling 'git reset --hard 1d31c81310cab6b46e51d9b3260e08cfac184233' 2026-02-11 00:46:18,219 [ scc.git] DEBUG HEAD is now at 1d31c813 merge master -Dorg -Ssuccess-only: PR 663 (Zarr) 2026-02-11 00:46:18,417 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:46:18,417 [ scc.git] DEBUG Calling 'git merge-base e241dc01b21d8800b6e34e087cbf7099046f68e6 bdf45b550f4528d17eba292491bbb620ad49022b' 2026-02-11 00:46:18,422 [ scc.git] DEBUG Calling 'git diff --name-only b79d638b95385463319f73afc484cf4a1ee3ba13..e241dc01b21d8800b6e34e087cbf7099046f68e6' 2026-02-11 00:46:18,425 [ scc.git] INFO - PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID' Conflicting PR. Removed from build [OMERO-plugins-push#52](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/52/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/52/consoleText) for more details. Possible conflicts: - PR #654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes' - src/js/models/panel_model.js - src/js/models/figure_model.js - PR #663 will-moore 'Zarr' - src/js/models/panel_model.js - src/js/models/figure_model.js - PR #664 Nirkan 'Handle many channels ' - src/js/models/panel_model.js - Upstream changes - src/js/models/panel_model.js - src/js/models/figure_model.js --conflicts 2026-02-11 00:46:18,427 [ scc.config] DEBUG Found github.token 2026-02-11 00:46:18,427 [ scc.git] DEBUG Not adding comment to issue #665, already --conflicts. 2026-02-11 00:46:18,427 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b9ab0e6c6571d1eb2732ff143d5d35f8b4b21d2a' 2026-02-11 00:46:18,432 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:46:18,434 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 666 (Standalone app) b9ab0e6c6571d1eb2732ff143d5d35f8b4b21d2a' 2026-02-11 00:46:18,457 [ scc.git] DEBUG Auto-merging omero_figure/views.py 2026-02-11 00:46:18,457 [ scc.git] DEBUG Auto-merging src/index.html 2026-02-11 00:46:18,457 [ scc.git] DEBUG Auto-merging src/js/models/figure_model.js 2026-02-11 00:46:18,457 [ scc.git] DEBUG Auto-merging src/js/views/figure_view.js 2026-02-11 00:46:18,458 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-11 00:46:18,464 [ scc.git] DEBUG .github/workflows/pages.yml | 28 ++++++++ 2026-02-11 00:46:18,464 [ scc.git] DEBUG .gitignore | 1 + 2026-02-11 00:46:18,464 [ scc.git] DEBUG deploy_ghpages.sh | 7 ++ 2026-02-11 00:46:18,464 [ scc.git] DEBUG omero_figure/views.py | 8 ++- 2026-02-11 00:46:18,464 [ scc.git] DEBUG package.json | 2 + 2026-02-11 00:46:18,464 [ scc.git] DEBUG src/css/figure.css | 3 +- 2026-02-11 00:46:18,464 [ scc.git] DEBUG src/index.html | 79 ++++++++++++++++++++-- 2026-02-11 00:46:18,464 [ scc.git] DEBUG src/js/main.js | 36 +++++++--- 2026-02-11 00:46:18,464 [ scc.git] DEBUG src/js/models/figure_model.js | 25 +++++++ 2026-02-11 00:46:18,464 [ scc.git] DEBUG src/js/views/channel_slider_view.js | 15 +++-- 2026-02-11 00:46:18,464 [ scc.git] DEBUG src/js/views/figure_view.js | 101 ++++++++++++++++++++--------- 2026-02-11 00:46:18,464 [ scc.git] DEBUG src/js/views/lutpicker.js | 34 ++++++++-- 2026-02-11 00:46:18,464 [ scc.git] DEBUG src/js/views/open_local_file_modal.js | 73 +++++++++++++++++++++ 2026-02-11 00:46:18,464 [ scc.git] DEBUG src/js/views/util.js | 13 ++++ 2026-02-11 00:46:18,464 [ scc.git] DEBUG src/templates/channel_slider.template.html | 4 +- 2026-02-11 00:46:18,464 [ scc.git] DEBUG src/templates/lut_picker.template.html | 6 +- 2026-02-11 00:46:18,464 [ scc.git] DEBUG vite.config.js | 12 +++- 2026-02-11 00:46:18,464 [ scc.git] DEBUG 17 files changed, 388 insertions(+), 59 deletions(-) 2026-02-11 00:46:18,464 [ scc.git] DEBUG create mode 100644 .github/workflows/pages.yml 2026-02-11 00:46:18,464 [ scc.git] DEBUG create mode 100755 deploy_ghpages.sh 2026-02-11 00:46:18,464 [ scc.git] DEBUG create mode 100644 src/js/views/open_local_file_modal.js 2026-02-11 00:46:18,838 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:46:18,838 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...317160c08a2bdc467f7867954ec7b633d4e8f5cd' 2026-02-11 00:46:18,844 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:46:18,846 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 667 (Label suggestion interface) 317160c08a2bdc467f7867954ec7b633d4e8f5cd' 2026-02-11 00:46:18,864 [ scc.git] DEBUG Auto-merging src/css/figure.css 2026-02-11 00:46:18,865 [ scc.git] DEBUG Auto-merging src/js/views/right_panel_view.js 2026-02-11 00:46:18,865 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-11 00:46:18,869 [ scc.git] DEBUG src/css/figure.css | 15 + 2026-02-11 00:46:18,869 [ scc.git] DEBUG src/js/views/label_suggestions.js | 697 ++++++++++++++++++++++++++ 2026-02-11 00:46:18,869 [ scc.git] DEBUG src/js/views/right_panel_view.js | 55 ++ 2026-02-11 00:46:18,869 [ scc.git] DEBUG src/templates/labels_form_inner.template.html | 64 +-- 2026-02-11 00:46:18,869 [ scc.git] DEBUG 4 files changed, 776 insertions(+), 55 deletions(-) 2026-02-11 00:46:18,869 [ scc.git] DEBUG create mode 100644 src/js/views/label_suggestions.js 2026-02-11 00:46:19,240 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:46:19,241 [ scc.git] DEBUG Calling 'git submodule update' 2026-02-11 00:46:19,278 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:46:19,278 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:46:19,281 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-11 00:46:19,317 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-02-11 00:46:19,323 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f176968c850> has no local changes 2026-02-11 00:46:19,323 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-figure Excluded PRs: - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier) Updating 9cc36cde..e241dc01 Previously merged: - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540' - PR 661 Rdornier 'Align to grid - check if panels are already in the grid' - PR 649 jburel 'Replace manual changelog by automated GH release step' - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout' - PR 637 Rdornier 'Fix scalebar position' - PR 600 Rdornier 'Label on rois' - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles' - PR 651 Rdornier 'More compliant align to grid' - PR 650 jburel 'Bump Python version' - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…' - PR 610 will-moore 'Add docs/contributing.rst' - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1' - PR 646 JensWendt 'fix word wrap of image names' - PR 612 will-moore 'Script version' - PR 630 will-moore 'Fix color and position for ALL new panel insets' - PR 616 Rdornier 'Fix labels around border' - PR 605 Tom-TBT 'Colorbar feature' - PR 638 Rdornier 'Fix arrow opacity' - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4' - PR 635 dependabot[bot] 'Bump esbuild and vite' - PR 623 will-moore 'Fix wrapping of label X button. see issues/622' - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 ' - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes' - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO' - PR 662 will-moore 'Export script runnable without OMERO' - PR 663 will-moore 'Zarr' - PR 666 will-moore 'Standalone app' - PR 667 Tom-TBT 'Label suggestion interface' Conflicting PRs (not included): - PR 664 Nirkan 'Handle many channels ' - PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID' Generated by OMERO-plugins-push#52 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/52/)' 2026-02-11 00:46:19,330 [ scc.git] DEBUG [detached HEAD c3105e0b] merge master -Dorg -Ssuccess-only 2026-02-11 00:46:19,330 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:46:19,330 [ scc.repo] DEBUG ## PRs found: 2026-02-11 00:46:19,771 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/pulls HTTP/1.1" 200 None 2026-02-11 00:46:20,266 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/31 HTTP/1.1" 200 None 2026-02-11 00:46:20,267 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-11 00:46:20,994 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c HTTP/1.1" 200 None 2026-02-11 00:46:21,579 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:46:22,087 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-11 00:46:22,547 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c HTTP/1.1" 200 None 2026-02-11 00:46:22,982 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/statuses/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c?per_page=1 HTTP/1.1" 200 2 2026-02-11 00:46:22,983 [ scc.repo] DEBUG - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-02-11 00:46:23,479 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/18 HTTP/1.1" 200 None 2026-02-11 00:46:24,024 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/18/comments HTTP/1.1" 200 None 2026-02-11 00:46:24,570 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337 HTTP/1.1" 200 None 2026-02-11 00:46:25,058 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:46:25,760 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337 HTTP/1.1" 200 None 2026-02-11 00:46:26,190 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/statuses/45aed4d15501fa5a524a8b500af8d426f0f6b337?per_page=1 HTTP/1.1" 200 2 2026-02-11 00:46:26,190 [ scc.repo] DEBUG - PR 18 jburel 'default size z value' 2026-02-11 00:46:26,190 [ scc.repo] DEBUG ## Branches found: 2026-02-11 00:46:26,190 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage 2026-02-11 00:46:26,191 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:46:26,191 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:46:26,193 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-02-11 00:46:26,195 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-02-11 00:46:26,195 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-02-11 00:46:26,198 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-02-11 00:46:26,200 [ scc.git] DEBUG Already up to date. 2026-02-11 00:46:26,201 [ scc.git] DEBUG Calling 'git fetch origin pull/18/head' 2026-02-11 00:46:26,482 [ scc.git] DEBUG From https://github.com/ome/omero-fpbioimage 2026-02-11 00:46:26,482 [ scc.git] DEBUG * branch refs/pull/18/head -> FETCH_HEAD 2026-02-11 00:46:26,486 [ scc.git] DEBUG Calling 'git fetch origin pull/31/head' 2026-02-11 00:46:26,753 [ scc.git] DEBUG From https://github.com/ome/omero-fpbioimage 2026-02-11 00:46:26,753 [ scc.git] DEBUG * branch refs/pull/31/head -> FETCH_HEAD 2026-02-11 00:46:26,757 [ scc.git] DEBUG ## Unique users: [] 2026-02-11 00:46:26,757 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:46:26,757 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:46:26,759 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45aed4d15501fa5a524a8b500af8d426f0f6b337' 2026-02-11 00:46:26,762 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:46:26,765 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 18 (default size z value) 45aed4d15501fa5a524a8b500af8d426f0f6b337' 2026-02-11 00:46:26,865 [ scc.git] DEBUG Auto-merging omero_fpbioimage/views.py 2026-02-11 00:46:26,866 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-11 00:46:26,868 [ scc.git] DEBUG omero_fpbioimage/views.py | 2 ++ 2026-02-11 00:46:26,868 [ scc.git] DEBUG 1 file changed, 2 insertions(+) 2026-02-11 00:46:27,019 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:46:27,020 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c' 2026-02-11 00:46:27,023 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:46:27,025 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 31 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c' 2026-02-11 00:46:27,032 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-11 00:46:27,035 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-02-11 00:46:27,035 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-02-11 00:46:27,416 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:46:27,417 [ scc.git] DEBUG Calling 'git submodule update' 2026-02-11 00:46:27,454 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:46:27,454 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:46:27,456 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-11 00:46:27,492 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-02-11 00:46:27,495 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f17684b7f10> has no local changes 2026-02-11 00:46:27,495 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-fpbioimage Already up to date. Merged PRs: - PR 18 jburel 'default size z value' - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#52 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/52/)' 2026-02-11 00:46:27,500 [ scc.git] DEBUG [detached HEAD bee5243] merge master -Dorg -Ssuccess-only 2026-02-11 00:46:27,501 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:46:27,501 [ scc.repo] DEBUG ## PRs found: 2026-02-11 00:46:27,972 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/pulls HTTP/1.1" 200 None 2026-02-11 00:46:28,490 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/119 HTTP/1.1" 200 None 2026-02-11 00:46:29,009 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/119/comments HTTP/1.1" 200 None 2026-02-11 00:46:29,477 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/9042541/issues/119/comments?page=2 HTTP/1.1" 200 None 2026-02-11 00:46:29,479 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-11 00:46:30,121 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062 HTTP/1.1" 200 None 2026-02-11 00:46:30,639 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:46:31,163 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-11 00:46:31,641 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062 HTTP/1.1" 200 None 2026-02-11 00:46:32,090 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/00257fc993a12b3f78a45db039e7bf2c8a406062?per_page=1 HTTP/1.1" 200 2 2026-02-11 00:46:32,090 [ scc.repo] DEBUG - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' 2026-02-11 00:46:32,621 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/118 HTTP/1.1" 200 None 2026-02-11 00:46:33,137 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/118/comments HTTP/1.1" 200 None 2026-02-11 00:46:33,602 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/9042541/issues/118/comments?page=2 HTTP/1.1" 200 None 2026-02-11 00:46:33,603 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-11 00:46:34,175 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d HTTP/1.1" 200 None 2026-02-11 00:46:34,664 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:46:35,266 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d HTTP/1.1" 200 None 2026-02-11 00:46:35,700 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/2bf34ddacb511c52e473a104fe2a1c00204bae1d?per_page=1 HTTP/1.1" 200 2 2026-02-11 00:46:35,701 [ scc.repo] DEBUG - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' 2026-02-11 00:46:38,184 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/117 HTTP/1.1" 200 None 2026-02-11 00:46:38,185 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-11 00:46:38,737 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c HTTP/1.1" 200 None 2026-02-11 00:46:39,183 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:46:39,737 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c HTTP/1.1" 200 None 2026-02-11 00:46:40,166 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/155d7ddab4f04c4a91bffc5736ba0741003c566c?per_page=1 HTTP/1.1" 200 2 2026-02-11 00:46:40,166 [ scc.repo] DEBUG - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' 2026-02-11 00:46:40,451 [urllib3.util] DEBUG Incremented Retry for (url='/repos/ome/omero-gallery/issues/116'): GithubRetry(total=9, connect=None, read=None, redirect=None, status=None) 2026-02-11 00:46:40,451 [urllib3.conn] WARNI Retrying (GithubRetry(total=9, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProtocolError('Connection aborted.', RemoteDisconnected('Remote end closed connection without response'))': /repos/ome/omero-gallery/issues/116 2026-02-11 00:46:40,451 [urllib3.conn] DEBUG Starting new HTTPS connection (2): api.github.com:443 2026-02-11 00:46:40,756 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/116 HTTP/1.1" 200 None 2026-02-11 00:46:40,756 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-11 00:46:41,322 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d HTTP/1.1" 200 None 2026-02-11 00:46:41,808 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:46:42,365 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d HTTP/1.1" 200 None 2026-02-11 00:46:42,782 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d?per_page=1 HTTP/1.1" 200 2 2026-02-11 00:46:42,782 [ scc.repo] DEBUG - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' 2026-02-11 00:46:43,272 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/115 HTTP/1.1" 200 None 2026-02-11 00:46:43,762 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/115/comments HTTP/1.1" 200 None 2026-02-11 00:46:43,763 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-11 00:46:44,329 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5 HTTP/1.1" 200 None 2026-02-11 00:46:44,799 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:46:45,274 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5 HTTP/1.1" 200 None 2026-02-11 00:46:45,714 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/25020d66a7df4ec3cad5967706bb7d13b1493bb5?per_page=1 HTTP/1.1" 200 2 2026-02-11 00:46:45,714 [ scc.repo] DEBUG - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' 2026-02-11 00:46:46,199 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/114 HTTP/1.1" 200 None 2026-02-11 00:46:46,199 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-11 00:46:46,790 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b HTTP/1.1" 200 None 2026-02-11 00:46:47,256 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:46:47,828 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b HTTP/1.1" 200 None 2026-02-11 00:46:48,262 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/cf75d259b2882000d6be73bc1c11c99c27aa439b?per_page=1 HTTP/1.1" 200 2 2026-02-11 00:46:48,262 [ scc.repo] DEBUG - PR 114 dependabot[bot] 'Bump tar and fsevents' 2026-02-11 00:46:48,740 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/113 HTTP/1.1" 200 None 2026-02-11 00:46:48,740 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-11 00:46:49,339 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e HTTP/1.1" 200 None 2026-02-11 00:46:49,795 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:46:50,397 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e HTTP/1.1" 200 None 2026-02-11 00:46:50,843 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/6a657d7a4e0bbfaa3464e851023f29c63db15d4e?per_page=1 HTTP/1.1" 200 2 2026-02-11 00:46:50,843 [ scc.repo] DEBUG - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' 2026-02-11 00:46:50,843 [ scc.repo] DEBUG ## Branches found: 2026-02-11 00:46:50,844 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery 2026-02-11 00:46:50,844 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:46:50,844 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:46:50,847 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-02-11 00:46:50,849 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-02-11 00:46:50,849 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-02-11 00:46:50,852 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-02-11 00:46:50,854 [ scc.git] DEBUG Already up to date. 2026-02-11 00:46:50,855 [ scc.git] DEBUG Calling 'git fetch origin pull/113/head' 2026-02-11 00:46:51,119 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-02-11 00:46:51,119 [ scc.git] DEBUG * branch refs/pull/113/head -> FETCH_HEAD 2026-02-11 00:46:51,123 [ scc.git] DEBUG Calling 'git fetch origin pull/114/head' 2026-02-11 00:46:51,374 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-02-11 00:46:51,374 [ scc.git] DEBUG * branch refs/pull/114/head -> FETCH_HEAD 2026-02-11 00:46:51,378 [ scc.git] DEBUG Calling 'git fetch origin pull/115/head' 2026-02-11 00:46:51,632 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-02-11 00:46:51,632 [ scc.git] DEBUG * branch refs/pull/115/head -> FETCH_HEAD 2026-02-11 00:46:51,635 [ scc.git] DEBUG Calling 'git fetch origin pull/116/head' 2026-02-11 00:46:51,905 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-02-11 00:46:51,905 [ scc.git] DEBUG * branch refs/pull/116/head -> FETCH_HEAD 2026-02-11 00:46:51,908 [ scc.git] DEBUG Calling 'git fetch origin pull/117/head' 2026-02-11 00:46:52,165 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-02-11 00:46:52,166 [ scc.git] DEBUG * branch refs/pull/117/head -> FETCH_HEAD 2026-02-11 00:46:52,169 [ scc.git] DEBUG Calling 'git fetch origin pull/118/head' 2026-02-11 00:46:52,426 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-02-11 00:46:52,426 [ scc.git] DEBUG * branch refs/pull/118/head -> FETCH_HEAD 2026-02-11 00:46:52,430 [ scc.git] DEBUG Calling 'git fetch origin pull/119/head' 2026-02-11 00:46:52,687 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-02-11 00:46:52,687 [ scc.git] DEBUG * branch refs/pull/119/head -> FETCH_HEAD 2026-02-11 00:46:52,690 [ scc.git] DEBUG ## Unique users: [] 2026-02-11 00:46:52,690 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:46:52,690 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:46:52,692 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6a657d7a4e0bbfaa3464e851023f29c63db15d4e' 2026-02-11 00:46:52,695 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:46:52,697 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 113 (Bump elliptic from 6.5.4 to 6.6.1) 6a657d7a4e0bbfaa3464e851023f29c63db15d4e' 2026-02-11 00:46:52,705 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-11 00:46:52,709 [ scc.git] DEBUG package-lock.json | 12 ++++++------ 2026-02-11 00:46:52,709 [ scc.git] DEBUG 1 file changed, 6 insertions(+), 6 deletions(-) 2026-02-11 00:46:52,871 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:46:52,872 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...cf75d259b2882000d6be73bc1c11c99c27aa439b' 2026-02-11 00:46:52,874 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:46:52,877 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 114 (Bump tar and fsevents) cf75d259b2882000d6be73bc1c11c99c27aa439b' 2026-02-11 00:46:52,891 [ scc.git] DEBUG Auto-merging package-lock.json 2026-02-11 00:46:52,892 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-11 00:46:52,896 [ scc.git] DEBUG package-lock.json | 625 +++--------------------------------------------------- 2026-02-11 00:46:52,896 [ scc.git] DEBUG 1 file changed, 29 insertions(+), 596 deletions(-) 2026-02-11 00:46:53,285 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:46:53,286 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25020d66a7df4ec3cad5967706bb7d13b1493bb5' 2026-02-11 00:46:53,289 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:46:53,291 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 115 (Bump micromatch, webpack-cli and webpack) 25020d66a7df4ec3cad5967706bb7d13b1493bb5' 2026-02-11 00:46:53,374 [ scc.git] DEBUG Auto-merging package-lock.json 2026-02-11 00:46:53,374 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2026-02-11 00:46:53,374 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-02-11 00:46:53,375 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-02-11 00:46:53,377 [ scc.git] DEBUG Calling 'git reset --hard 827da4d1fe82d21bb60d82f4ba246616335f5a70' 2026-02-11 00:46:53,382 [ scc.git] DEBUG HEAD is now at 827da4d merge master -Dorg -Ssuccess-only: PR 114 (Bump tar and fsevents) 2026-02-11 00:46:53,705 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:46:53,706 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 25020d66a7df4ec3cad5967706bb7d13b1493bb5' 2026-02-11 00:46:53,708 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd' 2026-02-11 00:46:53,710 [ scc.git] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' Conflicting PR. Removed from build [OMERO-plugins-push#52](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/52/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/52/consoleText) for more details. Possible conflicts: - PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - package-lock.json - PR #114 dependabot[bot] 'Bump tar and fsevents' - package-lock.json --conflicts 2026-02-11 00:46:53,712 [ scc.config] DEBUG Found github.token 2026-02-11 00:46:53,712 [ scc.git] DEBUG Not adding comment to issue #115, already --conflicts. 2026-02-11 00:46:53,713 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d' 2026-02-11 00:46:53,715 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:46:53,717 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 116 (Bump browserify-sign from 4.0.4 to 4.2.3) 42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d' 2026-02-11 00:46:53,733 [ scc.git] DEBUG Auto-merging package-lock.json 2026-02-11 00:46:53,734 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-11 00:46:53,739 [ scc.git] DEBUG package-lock.json | 119 +++++++++++++++++++++++++++++++++++++++++++++++++----- 2026-02-11 00:46:53,739 [ scc.git] DEBUG 1 file changed, 108 insertions(+), 11 deletions(-) 2026-02-11 00:46:54,107 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:46:54,107 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...155d7ddab4f04c4a91bffc5736ba0741003c566c' 2026-02-11 00:46:54,110 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:46:54,112 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6) 155d7ddab4f04c4a91bffc5736ba0741003c566c' 2026-02-11 00:46:54,127 [ scc.git] DEBUG Auto-merging package-lock.json 2026-02-11 00:46:54,127 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-11 00:46:54,132 [ scc.git] DEBUG package-lock.json | 6 +++--- 2026-02-11 00:46:54,132 [ scc.git] DEBUG 1 file changed, 3 insertions(+), 3 deletions(-) 2026-02-11 00:46:54,513 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:46:54,514 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2bf34ddacb511c52e473a104fe2a1c00204bae1d' 2026-02-11 00:46:54,516 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:46:54,519 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 118 (Bump braces, webpack-cli and webpack) 2bf34ddacb511c52e473a104fe2a1c00204bae1d' 2026-02-11 00:46:54,600 [ scc.git] DEBUG Auto-merging package-lock.json 2026-02-11 00:46:54,600 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2026-02-11 00:46:54,600 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-02-11 00:46:54,600 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-02-11 00:46:54,603 [ scc.git] DEBUG Calling 'git reset --hard 954f1ae7d34fcd3ca9f40a54fe18413dcff0d559' 2026-02-11 00:46:54,607 [ scc.git] DEBUG HEAD is now at 954f1ae merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6) 2026-02-11 00:46:54,914 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:46:54,915 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 2bf34ddacb511c52e473a104fe2a1c00204bae1d' 2026-02-11 00:46:54,917 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd' 2026-02-11 00:46:54,919 [ scc.git] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' Conflicting PR. Removed from build [OMERO-plugins-push#52](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/52/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/52/consoleText) for more details. Possible conflicts: - PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - package-lock.json - PR #114 dependabot[bot] 'Bump tar and fsevents' - package-lock.json - PR #115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - package-lock.json - PR #116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - package-lock.json - PR #117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' - package-lock.json --conflicts 2026-02-11 00:46:54,921 [ scc.config] DEBUG Found github.token 2026-02-11 00:46:54,921 [ scc.git] DEBUG Not adding comment to issue #118, already --conflicts. 2026-02-11 00:46:54,922 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...00257fc993a12b3f78a45db039e7bf2c8a406062' 2026-02-11 00:46:54,924 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:46:54,926 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 119 (Bump serialize-javascript and webpack) 00257fc993a12b3f78a45db039e7bf2c8a406062' 2026-02-11 00:46:54,945 [ scc.git] DEBUG Auto-merging package-lock.json 2026-02-11 00:46:54,945 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2026-02-11 00:46:54,946 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-02-11 00:46:54,946 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-02-11 00:46:54,948 [ scc.git] DEBUG Calling 'git reset --hard 954f1ae7d34fcd3ca9f40a54fe18413dcff0d559' 2026-02-11 00:46:54,953 [ scc.git] DEBUG HEAD is now at 954f1ae merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6) 2026-02-11 00:46:55,313 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:46:55,313 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 00257fc993a12b3f78a45db039e7bf2c8a406062' 2026-02-11 00:46:55,316 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd' 2026-02-11 00:46:55,318 [ scc.git] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' Conflicting PR. Removed from build [OMERO-plugins-push#52](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/52/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/52/consoleText) for more details. Possible conflicts: - PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - package-lock.json - PR #114 dependabot[bot] 'Bump tar and fsevents' - package-lock.json - PR #115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - package-lock.json - PR #116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - package-lock.json - PR #117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' - package-lock.json - PR #118 dependabot[bot] 'Bump braces, webpack-cli and webpack' - package-lock.json --conflicts 2026-02-11 00:46:55,320 [ scc.config] DEBUG Found github.token 2026-02-11 00:46:55,320 [ scc.git] DEBUG Not adding comment to issue #119, already --conflicts. 2026-02-11 00:46:55,320 [ scc.git] DEBUG Calling 'git submodule update' 2026-02-11 00:46:55,357 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:46:55,357 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:46:55,359 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-11 00:46:55,395 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-02-11 00:46:55,399 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f1769603d90> has no local changes 2026-02-11 00:46:55,399 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-gallery Already up to date. Merged PRs: - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - PR 114 dependabot[bot] 'Bump tar and fsevents' - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' Conflicting PRs (not included): - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' Generated by OMERO-plugins-push#52 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/52/)' 2026-02-11 00:46:55,405 [ scc.git] DEBUG [detached HEAD 321a718] merge master -Dorg -Ssuccess-only 2026-02-11 00:46:55,405 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:46:55,405 [ scc.repo] DEBUG ## PRs found: 2026-02-11 00:46:55,934 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls HTTP/1.1" 200 None 2026-02-11 00:46:56,536 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/513 HTTP/1.1" 200 None 2026-02-11 00:46:57,054 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/aebb6273b9267a47a47363208fa97dc9c638a688 HTTP/1.1" 200 None 2026-02-11 00:46:57,569 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/aebb6273b9267a47a47363208fa97dc9c638a688/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:46:58,062 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/aebb6273b9267a47a47363208fa97dc9c638a688/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-11 00:46:58,574 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/aebb6273b9267a47a47363208fa97dc9c638a688 HTTP/1.1" 200 None 2026-02-11 00:46:59,005 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/aebb6273b9267a47a47363208fa97dc9c638a688?per_page=1 HTTP/1.1" 200 2 2026-02-11 00:46:59,005 [ scc.repo] DEBUG - PR 513 jburel 'Bump Python version' 2026-02-11 00:46:59,491 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/512 HTTP/1.1" 200 None 2026-02-11 00:47:00,108 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/ec8f9e716c574a715529da53dff61ef178020c43 HTTP/1.1" 200 None 2026-02-11 00:47:00,611 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/ec8f9e716c574a715529da53dff61ef178020c43/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:47:01,102 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/ec8f9e716c574a715529da53dff61ef178020c43/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-11 00:47:01,624 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/ec8f9e716c574a715529da53dff61ef178020c43 HTTP/1.1" 200 None 2026-02-11 00:47:02,139 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/ec8f9e716c574a715529da53dff61ef178020c43?per_page=1 HTTP/1.1" 200 2 2026-02-11 00:47:02,139 [ scc.repo] DEBUG - PR 512 jburel 'Replace manual changelog by automated GH release step' 2026-02-11 00:47:02,635 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/511 HTTP/1.1" 200 None 2026-02-11 00:47:03,157 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/508 HTTP/1.1" 200 None 2026-02-11 00:47:03,682 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/503 HTTP/1.1" 200 None 2026-02-11 00:47:04,216 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/503/comments HTTP/1.1" 200 None 2026-02-11 00:47:04,727 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/502 HTTP/1.1" 200 None 2026-02-11 00:47:05,238 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/502/comments HTTP/1.1" 200 None 2026-02-11 00:47:05,239 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-11 00:47:05,828 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/45d08b7e29871ecff0386975c975dacd0865bcc4 HTTP/1.1" 200 None 2026-02-11 00:47:06,321 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/45d08b7e29871ecff0386975c975dacd0865bcc4/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:47:07,423 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/45d08b7e29871ecff0386975c975dacd0865bcc4/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-11 00:47:07,992 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/45d08b7e29871ecff0386975c975dacd0865bcc4 HTTP/1.1" 200 None 2026-02-11 00:47:08,429 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/45d08b7e29871ecff0386975c975dacd0865bcc4?per_page=1 HTTP/1.1" 200 2 2026-02-11 00:47:08,430 [ scc.repo] DEBUG - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha' 2026-02-11 00:47:08,947 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/499 HTTP/1.1" 200 None 2026-02-11 00:47:08,948 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-11 00:47:09,513 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/b19bbac5f17ff2b53ba573ca58108d28d2d86bcc HTTP/1.1" 200 None 2026-02-11 00:47:10,058 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/b19bbac5f17ff2b53ba573ca58108d28d2d86bcc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:47:10,626 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/b19bbac5f17ff2b53ba573ca58108d28d2d86bcc/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-11 00:47:11,133 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/b19bbac5f17ff2b53ba573ca58108d28d2d86bcc HTTP/1.1" 200 None 2026-02-11 00:47:11,576 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/b19bbac5f17ff2b53ba573ca58108d28d2d86bcc?per_page=1 HTTP/1.1" 200 2 2026-02-11 00:47:11,576 [ scc.repo] DEBUG - PR 499 dependabot[bot] 'Bump nanoid and mocha' 2026-02-11 00:47:12,103 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/497 HTTP/1.1" 200 None 2026-02-11 00:47:12,563 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/497/comments HTTP/1.1" 200 None 2026-02-11 00:47:13,049 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/471 HTTP/1.1" 200 None 2026-02-11 00:47:13,543 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/471/comments HTTP/1.1" 200 None 2026-02-11 00:47:14,053 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9 HTTP/1.1" 200 None 2026-02-11 00:47:14,525 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:47:14,976 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9 HTTP/1.1" 200 None 2026-02-11 00:47:15,409 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/448d042a58da05a522531356cc58c1e35b5744d9?per_page=1 HTTP/1.1" 200 2 2026-02-11 00:47:15,409 [ scc.repo] DEBUG - PR 471 will-moore 'Z projection disabled tooltip' 2026-02-11 00:47:15,891 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/465 HTTP/1.1" 200 None 2026-02-11 00:47:16,417 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/465/comments HTTP/1.1" 200 None 2026-02-11 00:47:17,720 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/63dd9266a853ff522780066673d0ae2b770238cd HTTP/1.1" 200 None 2026-02-11 00:47:18,199 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/63dd9266a853ff522780066673d0ae2b770238cd/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:47:18,728 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/63dd9266a853ff522780066673d0ae2b770238cd HTTP/1.1" 200 None 2026-02-11 00:47:19,165 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/63dd9266a853ff522780066673d0ae2b770238cd?per_page=1 HTTP/1.1" 200 2 2026-02-11 00:47:19,165 [ scc.repo] DEBUG - PR 465 will-moore 'Save as Figure' 2026-02-11 00:47:19,636 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/460 HTTP/1.1" 200 None 2026-02-11 00:47:20,108 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/460/comments HTTP/1.1" 200 None 2026-02-11 00:47:20,644 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/dada2c46211e3bf8015cc47464ab2761ef74ca30 HTTP/1.1" 200 None 2026-02-11 00:47:21,107 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/dada2c46211e3bf8015cc47464ab2761ef74ca30/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:47:21,555 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/dada2c46211e3bf8015cc47464ab2761ef74ca30 HTTP/1.1" 200 None 2026-02-11 00:47:21,972 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/dada2c46211e3bf8015cc47464ab2761ef74ca30?per_page=1 HTTP/1.1" 200 2 2026-02-11 00:47:21,973 [ scc.repo] DEBUG - PR 460 will-moore 'Channel min spinner fix' 2026-02-11 00:47:22,473 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/227 HTTP/1.1" 200 None 2026-02-11 00:47:22,924 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/227/comments HTTP/1.1" 200 None 2026-02-11 00:47:23,453 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/a081a9f2892763bd49a7ad7ba425965150e76f97 HTTP/1.1" 200 None 2026-02-11 00:47:23,943 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/a081a9f2892763bd49a7ad7ba425965150e76f97/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:47:24,453 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/a081a9f2892763bd49a7ad7ba425965150e76f97/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-11 00:47:24,455 [ scc.repo] DEBUG ## Branches found: 2026-02-11 00:47:24,455 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer 2026-02-11 00:47:24,455 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:47:24,455 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:47:24,458 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-02-11 00:47:24,460 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-02-11 00:47:24,460 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-02-11 00:47:24,462 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-02-11 00:47:24,469 [ scc.git] DEBUG Updating 7a798ce..5e2de43 2026-02-11 00:47:25,175 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/510 HTTP/1.1" 200 None 2026-02-11 00:47:25,860 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/506 HTTP/1.1" 200 None 2026-02-11 00:47:25,862 [ scc.git] DEBUG Calling 'git fetch origin pull/460/head' 2026-02-11 00:47:26,305 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-02-11 00:47:26,305 [ scc.git] DEBUG * branch refs/pull/460/head -> FETCH_HEAD 2026-02-11 00:47:26,309 [ scc.git] DEBUG Calling 'git fetch origin pull/465/head' 2026-02-11 00:47:26,838 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-02-11 00:47:26,838 [ scc.git] DEBUG * branch refs/pull/465/head -> FETCH_HEAD 2026-02-11 00:47:26,842 [ scc.git] DEBUG Calling 'git fetch origin pull/471/head' 2026-02-11 00:47:27,101 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-02-11 00:47:27,101 [ scc.git] DEBUG * branch refs/pull/471/head -> FETCH_HEAD 2026-02-11 00:47:27,104 [ scc.git] DEBUG Calling 'git fetch origin pull/499/head' 2026-02-11 00:47:27,363 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-02-11 00:47:27,363 [ scc.git] DEBUG * branch refs/pull/499/head -> FETCH_HEAD 2026-02-11 00:47:27,367 [ scc.git] DEBUG Calling 'git fetch origin pull/502/head' 2026-02-11 00:47:27,622 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-02-11 00:47:27,622 [ scc.git] DEBUG * branch refs/pull/502/head -> FETCH_HEAD 2026-02-11 00:47:27,625 [ scc.git] DEBUG Calling 'git fetch origin pull/512/head' 2026-02-11 00:47:28,105 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-02-11 00:47:28,105 [ scc.git] DEBUG * branch refs/pull/512/head -> FETCH_HEAD 2026-02-11 00:47:28,108 [ scc.git] DEBUG Calling 'git fetch origin pull/513/head' 2026-02-11 00:47:28,364 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-02-11 00:47:28,364 [ scc.git] DEBUG * branch refs/pull/513/head -> FETCH_HEAD 2026-02-11 00:47:28,368 [ scc.git] DEBUG ## Unique users: [] 2026-02-11 00:47:28,369 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:47:28,369 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:47:28,371 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...dada2c46211e3bf8015cc47464ab2761ef74ca30' 2026-02-11 00:47:28,375 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:47:28,377 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 460 (Channel min spinner fix) dada2c46211e3bf8015cc47464ab2761ef74ca30' 2026-02-11 00:47:28,387 [ scc.git] DEBUG Auto-merging src/model/image_info.js 2026-02-11 00:47:28,387 [ scc.git] DEBUG Auto-merging src/settings/channel-range.js 2026-02-11 00:47:28,388 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-11 00:47:28,391 [ scc.git] DEBUG src/model/image_info.js | 7 ++++--- 2026-02-11 00:47:28,391 [ scc.git] DEBUG src/settings/channel-range.js | 4 +++- 2026-02-11 00:47:28,391 [ scc.git] DEBUG 2 files changed, 7 insertions(+), 4 deletions(-) 2026-02-11 00:47:28,561 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:47:28,562 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...63dd9266a853ff522780066673d0ae2b770238cd' 2026-02-11 00:47:28,566 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:47:28,568 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 465 (Save as Figure) 63dd9266a853ff522780066673d0ae2b770238cd' 2026-02-11 00:47:28,585 [ scc.git] DEBUG Auto-merging plugin/omero_iviewer/views.py 2026-02-11 00:47:28,585 [ scc.git] DEBUG Auto-merging src/app/context.js 2026-02-11 00:47:28,585 [ scc.git] DEBUG Auto-merging src/utils/constants.js 2026-02-11 00:47:28,585 [ scc.git] DEBUG Auto-merging src/viewers/viewer/Viewer.js 2026-02-11 00:47:28,586 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-11 00:47:28,590 [ scc.git] DEBUG plugin/omero_iviewer/views.py | 17 +++- 2026-02-11 00:47:28,590 [ scc.git] DEBUG src/app/context.js | 6 +- 2026-02-11 00:47:28,590 [ scc.git] DEBUG src/app/header.html | 5 + 2026-02-11 00:47:28,590 [ scc.git] DEBUG src/app/header.js | 45 ++++++++- 2026-02-11 00:47:28,590 [ scc.git] DEBUG src/utils/constants.js | 6 ++ 2026-02-11 00:47:28,590 [ scc.git] DEBUG src/utils/figure.js | 217 ++++++++++++++++++++++++++++++++++++++++++ 2026-02-11 00:47:28,590 [ scc.git] DEBUG 6 files changed, 290 insertions(+), 6 deletions(-) 2026-02-11 00:47:28,590 [ scc.git] DEBUG create mode 100644 src/utils/figure.js 2026-02-11 00:47:28,964 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:47:28,965 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...448d042a58da05a522531356cc58c1e35b5744d9' 2026-02-11 00:47:28,969 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:47:28,971 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 471 (Z projection disabled tooltip) 448d042a58da05a522531356cc58c1e35b5744d9' 2026-02-11 00:47:28,982 [ scc.git] DEBUG Auto-merging src/controls/dimension-slider.js 2026-02-11 00:47:28,983 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-11 00:47:28,986 [ scc.git] DEBUG src/controls/dimension-slider.html | 2 +- 2026-02-11 00:47:28,986 [ scc.git] DEBUG src/controls/dimension-slider.js | 20 ++++++++++++++++++++ 2026-02-11 00:47:28,986 [ scc.git] DEBUG 2 files changed, 21 insertions(+), 1 deletion(-) 2026-02-11 00:47:29,363 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:47:29,363 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b19bbac5f17ff2b53ba573ca58108d28d2d86bcc' 2026-02-11 00:47:29,367 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:47:29,369 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 499 (Bump nanoid and mocha) b19bbac5f17ff2b53ba573ca58108d28d2d86bcc' 2026-02-11 00:47:29,387 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-11 00:47:29,395 [ scc.git] DEBUG package-lock.json | 322 +++++++++++++++++++++++++++--------------------------- 2026-02-11 00:47:29,395 [ scc.git] DEBUG package.json | 2 +- 2026-02-11 00:47:29,395 [ scc.git] DEBUG 2 files changed, 163 insertions(+), 161 deletions(-) 2026-02-11 00:47:29,761 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:47:29,761 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45d08b7e29871ecff0386975c975dacd0865bcc4' 2026-02-11 00:47:29,765 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:47:29,768 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 502 (Bump serialize-javascript and mocha) 45d08b7e29871ecff0386975c975dacd0865bcc4' 2026-02-11 00:47:29,888 [ scc.git] DEBUG Auto-merging package-lock.json 2026-02-11 00:47:29,888 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2026-02-11 00:47:29,888 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-02-11 00:47:29,889 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-02-11 00:47:29,892 [ scc.git] DEBUG Calling 'git reset --hard 9015af57955cea5645ba73dae03c8a9bd8b43865' 2026-02-11 00:47:29,904 [ scc.git] DEBUG HEAD is now at 9015af5 merge master -Dorg -Ssuccess-only: PR 499 (Bump nanoid and mocha) 2026-02-11 00:47:30,167 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:47:30,168 [ scc.git] DEBUG Calling 'git merge-base 5e2de43ad401fb00690a79644056e0ac15fabfd5 45d08b7e29871ecff0386975c975dacd0865bcc4' 2026-02-11 00:47:30,170 [ scc.git] DEBUG Calling 'git diff --name-only 7a798ceeb3926d049d73788555fb63269a071052..5e2de43ad401fb00690a79644056e0ac15fabfd5' 2026-02-11 00:47:30,173 [ scc.git] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha' Conflicting PR. Removed from build [OMERO-plugins-push#52](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/52/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/52/consoleText) for more details. Possible conflicts: - PR #499 dependabot[bot] 'Bump nanoid and mocha' - package-lock.json --conflicts 2026-02-11 00:47:30,175 [ scc.config] DEBUG Found github.token 2026-02-11 00:47:30,175 [ scc.git] DEBUG Not adding comment to issue #502, already --conflicts. 2026-02-11 00:47:30,175 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...ec8f9e716c574a715529da53dff61ef178020c43' 2026-02-11 00:47:30,179 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:47:30,181 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 512 (Replace manual changelog by automated GH release step) ec8f9e716c574a715529da53dff61ef178020c43' 2026-02-11 00:47:30,193 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-11 00:47:30,196 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 5 + 2026-02-11 00:47:30,196 [ scc.git] DEBUG CHANGELOG.md | 261 ------------------------------------- 2026-02-11 00:47:30,196 [ scc.git] DEBUG 2 files changed, 5 insertions(+), 261 deletions(-) 2026-02-11 00:47:30,196 [ scc.git] DEBUG delete mode 100644 CHANGELOG.md 2026-02-11 00:47:30,573 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:47:30,574 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...aebb6273b9267a47a47363208fa97dc9c638a688' 2026-02-11 00:47:30,578 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:47:30,580 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 513 (Bump Python version) aebb6273b9267a47a47363208fa97dc9c638a688' 2026-02-11 00:47:30,589 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml 2026-02-11 00:47:30,590 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-11 00:47:30,592 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 4 ++-- 2026-02-11 00:47:30,592 [ scc.git] DEBUG 1 file changed, 2 insertions(+), 2 deletions(-) 2026-02-11 00:47:31,000 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:47:31,001 [ scc.git] DEBUG Calling 'git submodule update' 2026-02-11 00:47:31,038 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:47:31,038 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:47:31,040 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-11 00:47:31,077 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-02-11 00:47:31,080 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f17684aaa50> has no local changes 2026-02-11 00:47:31,080 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-iviewer Excluded PRs: - PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft) - PR 508 will-moore 'Broadcast channel demo' (stage: draft) - PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft) - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft) - PR 420 will-moore 'Add release process to README' (exclude comment) - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment) - PR 227 will-moore 'Vectortile investigation' (status: failure) Updating 7a798ce..5e2de43 Previously merged: - PR 510 joshmoore 'Re-enable omero-test-infra' - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 460 will-moore 'Channel min spinner fix' - PR 465 will-moore 'Save as Figure' - PR 471 will-moore 'Z projection disabled tooltip' - PR 499 dependabot[bot] 'Bump nanoid and mocha' - PR 512 jburel 'Replace manual changelog by automated GH release step' - PR 513 jburel 'Bump Python version' Conflicting PRs (not included): - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha' Generated by OMERO-plugins-push#52 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/52/)' 2026-02-11 00:47:31,086 [ scc.git] DEBUG [detached HEAD 4c227e5] merge master -Dorg -Ssuccess-only 2026-02-11 00:47:31,086 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:47:31,087 [ scc.repo] DEBUG ## PRs found: 2026-02-11 00:47:31,586 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/pulls HTTP/1.1" 200 None 2026-02-11 00:47:32,074 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95 HTTP/1.1" 200 None 2026-02-11 00:47:32,526 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95/comments HTTP/1.1" 200 None 2026-02-11 00:47:32,527 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-11 00:47:33,100 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99 HTTP/1.1" 200 None 2026-02-11 00:47:33,648 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:47:34,181 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-11 00:47:34,626 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99 HTTP/1.1" 200 None 2026-02-11 00:47:35,066 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/38cc352a088eaedfaa2dd8874c4f200f98f41a99?per_page=1 HTTP/1.1" 200 2 2026-02-11 00:47:35,066 [ scc.repo] DEBUG - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-02-11 00:47:35,558 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/94 HTTP/1.1" 200 None 2026-02-11 00:47:36,082 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None 2026-02-11 00:47:36,537 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:47:37,108 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None 2026-02-11 00:47:37,556 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1896cfebc876f939f8d83bd1cf56b8584ff2921d?per_page=1 HTTP/1.1" 200 2 2026-02-11 00:47:37,556 [ scc.repo] DEBUG - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-02-11 00:47:38,076 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None 2026-02-11 00:47:38,568 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None 2026-02-11 00:47:39,098 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None 2026-02-11 00:47:39,576 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:47:40,023 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None 2026-02-11 00:47:40,455 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/45ee35acc44a7d119aa20b38b0427efbe5405322?per_page=1 HTTP/1.1" 200 2 2026-02-11 00:47:40,456 [ scc.repo] DEBUG - PR 74 will-moore 'mapr extension of webclient' 2026-02-11 00:47:40,456 [ scc.repo] DEBUG ## Branches found: 2026-02-11 00:47:40,456 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr 2026-02-11 00:47:40,456 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:47:40,456 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:47:40,459 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-02-11 00:47:40,461 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-02-11 00:47:40,461 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-02-11 00:47:40,464 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-02-11 00:47:40,467 [ scc.git] DEBUG Already up to date. 2026-02-11 00:47:40,467 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head' 2026-02-11 00:47:40,837 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2026-02-11 00:47:40,837 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD 2026-02-11 00:47:40,841 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head' 2026-02-11 00:47:41,128 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2026-02-11 00:47:41,128 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD 2026-02-11 00:47:41,132 [ scc.git] DEBUG Calling 'git fetch origin pull/95/head' 2026-02-11 00:47:41,395 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2026-02-11 00:47:41,395 [ scc.git] DEBUG * branch refs/pull/95/head -> FETCH_HEAD 2026-02-11 00:47:41,399 [ scc.git] DEBUG ## Unique users: [] 2026-02-11 00:47:41,399 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:47:41,399 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:47:41,402 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45ee35acc44a7d119aa20b38b0427efbe5405322' 2026-02-11 00:47:41,405 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:47:41,407 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (mapr extension of webclient) 45ee35acc44a7d119aa20b38b0427efbe5405322' 2026-02-11 00:47:41,415 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-11 00:47:41,418 [ scc.git] DEBUG .../templates/webclient/base/base_container.html | 182 +++++++++++++ 2026-02-11 00:47:41,418 [ scc.git] DEBUG .../data/includes/right_plugin.general.js.html | 290 --------------------- 2026-02-11 00:47:41,418 [ scc.git] DEBUG requirements.txt | 2 +- 2026-02-11 00:47:41,418 [ scc.git] DEBUG 3 files changed, 183 insertions(+), 291 deletions(-) 2026-02-11 00:47:41,418 [ scc.git] DEBUG create mode 100644 omero_mapr/templates/webclient/base/base_container.html 2026-02-11 00:47:41,418 [ scc.git] DEBUG delete mode 100644 omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html 2026-02-11 00:47:41,567 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:47:41,567 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d' 2026-02-11 00:47:41,570 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:47:41,572 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d' 2026-02-11 00:47:41,579 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-11 00:47:41,582 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-02-11 00:47:41,582 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-02-11 00:47:41,984 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:47:41,985 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38cc352a088eaedfaa2dd8874c4f200f98f41a99' 2026-02-11 00:47:41,989 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:47:41,991 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 95 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 38cc352a088eaedfaa2dd8874c4f200f98f41a99' 2026-02-11 00:47:42,019 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml 2026-02-11 00:47:42,019 [ scc.git] DEBUG CONFLICT (content): Merge conflict in .github/workflows/publish_pypi.yml 2026-02-11 00:47:42,020 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-02-11 00:47:42,020 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-02-11 00:47:42,022 [ scc.git] DEBUG Calling 'git reset --hard 4d784d157797732086d1c393098aeb10b5120235' 2026-02-11 00:47:42,026 [ scc.git] DEBUG HEAD is now at 4d784d1 merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 2026-02-11 00:47:42,385 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:47:42,386 [ scc.git] DEBUG Calling 'git merge-base 0a557da89145e65db313c1721a26cb43e490dd8a 38cc352a088eaedfaa2dd8874c4f200f98f41a99' 2026-02-11 00:47:42,389 [ scc.git] DEBUG Calling 'git diff --name-only 0a557da89145e65db313c1721a26cb43e490dd8a..0a557da89145e65db313c1721a26cb43e490dd8a' 2026-02-11 00:47:42,391 [ scc.git] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Conflicting PR. Removed from build [OMERO-plugins-push#52](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/52/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/52/consoleText) for more details. Possible conflicts: - PR #94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' - .github/workflows/publish_pypi.yml --conflicts 2026-02-11 00:47:42,393 [ scc.config] DEBUG Found github.token 2026-02-11 00:47:42,393 [ scc.git] DEBUG Not adding comment to issue #95, already --conflicts. 2026-02-11 00:47:42,393 [ scc.git] DEBUG Calling 'git submodule update' 2026-02-11 00:47:42,429 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:47:42,430 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:47:42,432 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-11 00:47:42,469 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-02-11 00:47:42,472 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f17684fa9d0> has no local changes 2026-02-11 00:47:42,472 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-mapr Excluded PRs: - PR 79 will-moore 'Right panel title' (exclude comment) Already up to date. Merged PRs: - PR 74 will-moore 'mapr extension of webclient' - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Conflicting PRs (not included): - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#52 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/52/)' 2026-02-11 00:47:42,478 [ scc.git] DEBUG [detached HEAD 9048574] merge master -Dorg -Ssuccess-only 2026-02-11 00:47:42,478 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:47:42,478 [ scc.repo] DEBUG ## PRs found: 2026-02-11 00:47:42,974 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None 2026-02-11 00:47:43,478 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/92 HTTP/1.1" 200 None 2026-02-11 00:47:43,955 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/92/comments HTTP/1.1" 200 None 2026-02-11 00:47:44,483 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f HTTP/1.1" 200 None 2026-02-11 00:47:44,959 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:47:45,508 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f HTTP/1.1" 200 None 2026-02-11 00:47:45,940 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/64d33da6022f537d572d4f69a5cec86377b6e78f?per_page=1 HTTP/1.1" 200 2 2026-02-11 00:47:45,940 [ scc.repo] DEBUG - PR 92 dominikl 'add resolve_rois to projectwrapper' 2026-02-11 00:47:46,426 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None 2026-02-11 00:47:46,940 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None 2026-02-11 00:47:47,466 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None 2026-02-11 00:47:47,919 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:47:48,369 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None 2026-02-11 00:47:48,811 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2 2026-02-11 00:47:48,811 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate' 2026-02-11 00:47:49,298 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None 2026-02-11 00:47:49,785 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None 2026-02-11 00:47:50,302 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None 2026-02-11 00:47:50,768 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:47:51,221 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None 2026-02-11 00:47:51,630 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2 2026-02-11 00:47:51,630 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names' 2026-02-11 00:47:51,630 [ scc.repo] DEBUG ## Branches found: 2026-02-11 00:47:51,630 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata 2026-02-11 00:47:51,630 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:47:51,630 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:47:51,633 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-02-11 00:47:51,635 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-02-11 00:47:51,635 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-02-11 00:47:51,638 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-02-11 00:47:51,644 [ scc.git] DEBUG Updating 3cd120c..55060a2 2026-02-11 00:47:52,322 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None 2026-02-11 00:47:52,398 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head' 2026-02-11 00:47:52,735 [ scc.git] DEBUG From https://github.com/ome/omero-metadata 2026-02-11 00:47:52,735 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD 2026-02-11 00:47:52,739 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head' 2026-02-11 00:47:53,113 [ scc.git] DEBUG From https://github.com/ome/omero-metadata 2026-02-11 00:47:53,113 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD 2026-02-11 00:47:53,116 [ scc.git] DEBUG Calling 'git fetch origin pull/92/head' 2026-02-11 00:47:53,374 [ scc.git] DEBUG From https://github.com/ome/omero-metadata 2026-02-11 00:47:53,375 [ scc.git] DEBUG * branch refs/pull/92/head -> FETCH_HEAD 2026-02-11 00:47:53,379 [ scc.git] DEBUG ## Unique users: [] 2026-02-11 00:47:53,379 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:47:53,379 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:47:53,381 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102' 2026-02-11 00:47:53,385 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:47:53,387 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102' 2026-02-11 00:47:53,401 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py 2026-02-11 00:47:53,401 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py 2026-02-11 00:47:53,401 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py 2026-02-11 00:47:53,401 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py 2026-02-11 00:47:53,401 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-02-11 00:47:53,401 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-02-11 00:47:53,404 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501' 2026-02-11 00:47:53,408 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action 2026-02-11 00:47:53,574 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:47:53,575 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102' 2026-02-11 00:47:53,578 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501' 2026-02-11 00:47:53,581 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names' Conflicting PR. Removed from build [OMERO-plugins-push#52](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/52/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/52/consoleText) for more details. Possible conflicts: - Upstream changes - src/omero_metadata/cli.py - src/omero_metadata/populate.py --conflicts 2026-02-11 00:47:53,583 [ scc.config] DEBUG Found github.token 2026-02-11 00:47:53,583 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts. 2026-02-11 00:47:53,583 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7' 2026-02-11 00:47:53,587 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:47:53,589 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7' 2026-02-11 00:47:53,604 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py 2026-02-11 00:47:53,604 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py 2026-02-11 00:47:53,604 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py 2026-02-11 00:47:53,604 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-02-11 00:47:53,604 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-02-11 00:47:53,607 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501' 2026-02-11 00:47:53,612 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action 2026-02-11 00:47:53,982 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:47:53,982 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7' 2026-02-11 00:47:53,986 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501' 2026-02-11 00:47:53,988 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate' Conflicting PR. Removed from build [OMERO-plugins-push#52](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/52/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/52/consoleText) for more details. Possible conflicts: - PR #55 kkoz 'Prevent users from creating columns with python keyword names' - src/omero_metadata/populate.py - Upstream changes - src/omero_metadata/populate.py --conflicts 2026-02-11 00:47:53,990 [ scc.config] DEBUG Found github.token 2026-02-11 00:47:53,991 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts. 2026-02-11 00:47:53,991 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...64d33da6022f537d572d4f69a5cec86377b6e78f' 2026-02-11 00:47:53,993 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:47:53,995 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 92 (add resolve_rois to projectwrapper) 64d33da6022f537d572d4f69a5cec86377b6e78f' 2026-02-11 00:47:54,003 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-11 00:47:54,007 [ scc.git] DEBUG src/omero_metadata/populate.py | 55 +++++++++++++++++++++++++++++++++++++++++- 2026-02-11 00:47:54,007 [ scc.git] DEBUG 1 file changed, 54 insertions(+), 1 deletion(-) 2026-02-11 00:47:54,413 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:47:54,414 [ scc.git] DEBUG Calling 'git submodule update' 2026-02-11 00:47:54,450 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:47:54,451 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:47:54,453 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-11 00:47:54,489 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-02-11 00:47:54,493 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f17684b77d0> has no local changes 2026-02-11 00:47:54,493 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-metadata Updating 3cd120c..55060a2 Previously merged: - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 92 dominikl 'add resolve_rois to projectwrapper' Conflicting PRs (not included): - PR 55 kkoz 'Prevent users from creating columns with python keyword names' - PR 64 will-moore 'Support images_by_name for Screen and Plate' Generated by OMERO-plugins-push#52 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/52/)' 2026-02-11 00:47:54,499 [ scc.git] DEBUG [detached HEAD 6dc0dfb] merge master -Dorg -Ssuccess-only 2026-02-11 00:47:54,499 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:47:54,499 [ scc.repo] DEBUG ## PRs found: 2026-02-11 00:47:55,009 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None 2026-02-11 00:47:55,570 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None 2026-02-11 00:47:56,106 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None 2026-02-11 00:47:56,622 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:47:57,141 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-11 00:47:57,580 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None 2026-02-11 00:47:57,998 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2 2026-02-11 00:47:57,999 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-02-11 00:47:58,500 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None 2026-02-11 00:47:58,501 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-11 00:47:59,060 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None 2026-02-11 00:47:59,599 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:48:00,129 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-11 00:48:00,605 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None 2026-02-11 00:48:01,037 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2 2026-02-11 00:48:01,037 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' 2026-02-11 00:48:01,530 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None 2026-02-11 00:48:01,531 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-11 00:48:02,114 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None 2026-02-11 00:48:02,644 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:48:03,193 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-11 00:48:03,661 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None 2026-02-11 00:48:04,097 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2 2026-02-11 00:48:04,097 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' 2026-02-11 00:48:04,583 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None 2026-02-11 00:48:05,076 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None 2026-02-11 00:48:05,559 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None 2026-02-11 00:48:06,204 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None 2026-02-11 00:48:06,705 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None 2026-02-11 00:48:07,188 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None 2026-02-11 00:48:07,660 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None 2026-02-11 00:48:07,662 [ scc.repo] DEBUG ## Branches found: 2026-02-11 00:48:07,662 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade 2026-02-11 00:48:07,662 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:48:07,662 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:48:07,665 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-02-11 00:48:07,667 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-02-11 00:48:07,667 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-02-11 00:48:07,669 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-02-11 00:48:07,672 [ scc.git] DEBUG Already up to date. 2026-02-11 00:48:07,672 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head' 2026-02-11 00:48:07,946 [ scc.git] DEBUG From https://github.com/ome/omero-parade 2026-02-11 00:48:07,947 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD 2026-02-11 00:48:07,951 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head' 2026-02-11 00:48:08,208 [ scc.git] DEBUG From https://github.com/ome/omero-parade 2026-02-11 00:48:08,208 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD 2026-02-11 00:48:08,211 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head' 2026-02-11 00:48:08,470 [ scc.git] DEBUG From https://github.com/ome/omero-parade 2026-02-11 00:48:08,470 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD 2026-02-11 00:48:08,474 [ scc.git] DEBUG ## Unique users: [] 2026-02-11 00:48:08,475 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:48:08,475 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:48:08,477 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0' 2026-02-11 00:48:08,479 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:48:08,481 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0' 2026-02-11 00:48:08,488 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-11 00:48:08,491 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++---------------------------- 2026-02-11 00:48:08,491 [ scc.git] DEBUG package.json | 2 +- 2026-02-11 00:48:08,491 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-) 2026-02-11 00:48:08,635 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:48:08,635 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80' 2026-02-11 00:48:08,638 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:48:08,640 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80' 2026-02-11 00:48:08,649 [ scc.git] DEBUG Auto-merging package-lock.json 2026-02-11 00:48:08,649 [ scc.git] DEBUG Auto-merging package.json 2026-02-11 00:48:08,650 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-11 00:48:08,653 [ scc.git] DEBUG package-lock.json | 18 ++++++++++-------- 2026-02-11 00:48:08,653 [ scc.git] DEBUG package.json | 2 +- 2026-02-11 00:48:08,653 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-) 2026-02-11 00:48:09,041 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:48:09,041 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0' 2026-02-11 00:48:09,044 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:48:09,046 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0' 2026-02-11 00:48:09,054 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-11 00:48:09,056 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-02-11 00:48:09,056 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-02-11 00:48:09,469 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:48:09,469 [ scc.git] DEBUG Calling 'git submodule update' 2026-02-11 00:48:09,506 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:48:09,506 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:48:09,508 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-11 00:48:09,544 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-02-11 00:48:09,548 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f17684eb4d0> has no local changes 2026-02-11 00:48:09,548 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-parade Excluded PRs: - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft) - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment) - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment) - PR 39 chris-allan 'Expand all for Screens' (exclude comment) Already up to date. Merged PRs: - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Generated by OMERO-plugins-push#52 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/52/)' 2026-02-11 00:48:09,554 [ scc.git] DEBUG [detached HEAD da8dc0e] merge master -Dorg -Ssuccess-only 2026-02-11 00:48:09,554 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:48:09,554 [ scc.repo] DEBUG ## PRs found: 2026-02-11 00:48:09,982 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None 2026-02-11 00:48:10,492 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/16 HTTP/1.1" 200 None 2026-02-11 00:48:10,492 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-11 00:48:11,031 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None 2026-02-11 00:48:11,548 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:48:12,074 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-11 00:48:12,584 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None 2026-02-11 00:48:13,025 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/5381b9f25e1666d81d236039a1317276291e9b2e?per_page=1 HTTP/1.1" 200 2 2026-02-11 00:48:13,026 [ scc.repo] DEBUG - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-02-11 00:48:13,026 [ scc.repo] DEBUG ## Branches found: 2026-02-11 00:48:13,026 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools 2026-02-11 00:48:13,026 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:48:13,026 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:48:13,028 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-02-11 00:48:13,031 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-02-11 00:48:13,031 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-02-11 00:48:13,033 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-02-11 00:48:13,036 [ scc.git] DEBUG Already up to date. 2026-02-11 00:48:13,036 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head' 2026-02-11 00:48:13,311 [ scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools 2026-02-11 00:48:13,311 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD 2026-02-11 00:48:13,314 [ scc.git] DEBUG ## Unique users: [] 2026-02-11 00:48:13,314 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:48:13,314 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:48:13,317 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5381b9f25e1666d81d236039a1317276291e9b2e' 2026-02-11 00:48:13,319 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:48:13,321 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 5381b9f25e1666d81d236039a1317276291e9b2e' 2026-02-11 00:48:13,327 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-11 00:48:13,330 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-02-11 00:48:13,330 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-02-11 00:48:13,484 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:48:13,485 [ scc.git] DEBUG Calling 'git submodule update' 2026-02-11 00:48:13,521 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:48:13,521 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:48:13,523 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-11 00:48:13,559 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-02-11 00:48:13,562 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f1768505d10> has no local changes 2026-02-11 00:48:13,562 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-prometheus-tools Already up to date. Merged PRs: - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#52 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/52/)' 2026-02-11 00:48:13,567 [ scc.git] DEBUG [detached HEAD e849d99] merge master -Dorg -Ssuccess-only 2026-02-11 00:48:13,567 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:48:13,568 [ scc.repo] DEBUG ## PRs found: 2026-02-11 00:48:14,075 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None 2026-02-11 00:48:14,577 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/34 HTTP/1.1" 200 None 2026-02-11 00:48:14,577 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-11 00:48:15,153 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None 2026-02-11 00:48:15,670 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:48:16,186 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-11 00:48:16,729 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None 2026-02-11 00:48:17,173 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/149bb248277256d589ea0db597c04739e8134301?per_page=1 HTTP/1.1" 200 None 2026-02-11 00:48:17,780 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None 2026-02-11 00:48:18,214 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/status HTTP/1.1" 200 None 2026-02-11 00:48:18,214 [ scc.repo] DEBUG - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-02-11 00:48:18,688 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33 HTTP/1.1" 200 None 2026-02-11 00:48:19,167 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33/comments HTTP/1.1" 200 None 2026-02-11 00:48:19,725 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None 2026-02-11 00:48:20,278 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:48:20,770 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-11 00:48:21,221 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None 2026-02-11 00:48:21,667 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/1122baea98746effd4eb59deed25870f673ce3d3?per_page=1 HTTP/1.1" 200 None 2026-02-11 00:48:22,146 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None 2026-02-11 00:48:22,585 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/status HTTP/1.1" 200 None 2026-02-11 00:48:22,586 [ scc.repo] DEBUG - PR 33 jo-mueller 'Add roi to array functions' 2026-02-11 00:48:23,125 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None 2026-02-11 00:48:23,126 [ scc.repo] DEBUG ## Branches found: 2026-02-11 00:48:23,126 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois 2026-02-11 00:48:23,126 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:48:23,126 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:48:23,128 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-02-11 00:48:23,131 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-02-11 00:48:23,131 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-02-11 00:48:23,133 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-02-11 00:48:23,136 [ scc.git] DEBUG Already up to date. 2026-02-11 00:48:23,136 [ scc.git] DEBUG Calling 'git fetch origin pull/33/head' 2026-02-11 00:48:23,457 [ scc.git] DEBUG From https://github.com/ome/omero-rois 2026-02-11 00:48:23,457 [ scc.git] DEBUG * branch refs/pull/33/head -> FETCH_HEAD 2026-02-11 00:48:23,461 [ scc.git] DEBUG Calling 'git fetch origin pull/34/head' 2026-02-11 00:48:23,721 [ scc.git] DEBUG From https://github.com/ome/omero-rois 2026-02-11 00:48:23,721 [ scc.git] DEBUG * branch refs/pull/34/head -> FETCH_HEAD 2026-02-11 00:48:23,725 [ scc.git] DEBUG ## Unique users: [] 2026-02-11 00:48:23,725 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:48:23,725 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:48:23,727 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1122baea98746effd4eb59deed25870f673ce3d3' 2026-02-11 00:48:23,730 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:48:23,732 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 33 (Add roi to array functions) 1122baea98746effd4eb59deed25870f673ce3d3' 2026-02-11 00:48:23,739 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-11 00:48:23,742 [ scc.git] DEBUG setup.py | 4 +- 2026-02-11 00:48:23,742 [ scc.git] DEBUG src/omero_rois/__init__.py | 4 + 2026-02-11 00:48:23,742 [ scc.git] DEBUG src/omero_rois/library.py | 204 +++++++++++++++++++++++++++++++++++++++++++-- 2026-02-11 00:48:23,742 [ scc.git] DEBUG 3 files changed, 203 insertions(+), 9 deletions(-) 2026-02-11 00:48:23,892 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:48:23,893 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...149bb248277256d589ea0db597c04739e8134301' 2026-02-11 00:48:23,896 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:48:23,898 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 34 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 149bb248277256d589ea0db597c04739e8134301' 2026-02-11 00:48:23,904 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-11 00:48:23,907 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-02-11 00:48:23,907 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-02-11 00:48:24,299 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:48:24,300 [ scc.git] DEBUG Calling 'git submodule update' 2026-02-11 00:48:24,337 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:48:24,337 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:48:24,340 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-11 00:48:24,376 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-02-11 00:48:24,379 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f17684f0cd0> has no local changes 2026-02-11 00:48:24,380 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-rois Excluded PRs: - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) Already up to date. Merged PRs: - PR 33 jo-mueller 'Add roi to array functions' - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#52 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/52/)' 2026-02-11 00:48:24,385 [ scc.git] DEBUG [detached HEAD 17c460d] merge master -Dorg -Ssuccess-only 2026-02-11 00:48:24,385 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:48:24,385 [ scc.repo] DEBUG ## PRs found: 2026-02-11 00:48:24,888 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None 2026-02-11 00:48:25,408 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/22 HTTP/1.1" 200 None 2026-02-11 00:48:25,409 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-11 00:48:25,965 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None 2026-02-11 00:48:26,488 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:48:27,031 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-11 00:48:27,610 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None 2026-02-11 00:48:28,207 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/8b27e47a330555e99e9594f0c4b546946f4f98aa?per_page=1 HTTP/1.1" 200 2 2026-02-11 00:48:28,208 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-02-11 00:48:28,693 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None 2026-02-11 00:48:29,166 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None 2026-02-11 00:48:29,731 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None 2026-02-11 00:48:30,230 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:48:30,785 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None 2026-02-11 00:48:31,247 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2 2026-02-11 00:48:31,247 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)' 2026-02-11 00:48:31,247 [ scc.repo] DEBUG ## Branches found: 2026-02-11 00:48:31,247 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup 2026-02-11 00:48:31,247 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:48:31,247 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:48:31,250 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-02-11 00:48:31,252 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-02-11 00:48:31,252 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-02-11 00:48:31,255 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-02-11 00:48:31,258 [ scc.git] DEBUG Already up to date. 2026-02-11 00:48:31,258 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head' 2026-02-11 00:48:31,680 [ scc.git] DEBUG From https://github.com/ome/omero-signup 2026-02-11 00:48:31,680 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD 2026-02-11 00:48:31,684 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head' 2026-02-11 00:48:31,943 [ scc.git] DEBUG From https://github.com/ome/omero-signup 2026-02-11 00:48:31,943 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD 2026-02-11 00:48:31,947 [ scc.git] DEBUG ## Unique users: [] 2026-02-11 00:48:31,947 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:48:31,947 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:48:31,949 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d' 2026-02-11 00:48:31,952 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:48:31,954 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d' 2026-02-11 00:48:31,965 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py 2026-02-11 00:48:31,965 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py 2026-02-11 00:48:31,965 [ scc.git] DEBUG Auto-merging omero_signup/urls.py 2026-02-11 00:48:31,965 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py 2026-02-11 00:48:31,965 [ scc.git] DEBUG Auto-merging omero_signup/views.py 2026-02-11 00:48:31,965 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py 2026-02-11 00:48:31,965 [ scc.git] DEBUG Auto-merging setup.py 2026-02-11 00:48:31,965 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py 2026-02-11 00:48:31,965 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-02-11 00:48:31,965 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-02-11 00:48:31,968 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e' 2026-02-11 00:48:31,972 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build 2026-02-11 00:48:32,124 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:48:32,125 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d' 2026-02-11 00:48:32,128 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e' 2026-02-11 00:48:32,130 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)' Conflicting PR. Removed from build [OMERO-plugins-push#52](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/52/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/52/consoleText) for more details. Possible conflicts: - Upstream changes - omero_signup/urls.py - omero_signup/signup_settings.py - omero_signup/views.py - setup.py --conflicts 2026-02-11 00:48:32,132 [ scc.config] DEBUG Found github.token 2026-02-11 00:48:32,132 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts. 2026-02-11 00:48:32,132 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8b27e47a330555e99e9594f0c4b546946f4f98aa' 2026-02-11 00:48:32,135 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:48:32,137 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8b27e47a330555e99e9594f0c4b546946f4f98aa' 2026-02-11 00:48:32,143 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-11 00:48:32,146 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-02-11 00:48:32,146 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-02-11 00:48:32,525 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:48:32,526 [ scc.git] DEBUG Calling 'git submodule update' 2026-02-11 00:48:32,563 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:48:32,563 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:48:32,565 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-11 00:48:32,601 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-02-11 00:48:32,604 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f1768523850> has no local changes 2026-02-11 00:48:32,604 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-signup Already up to date. Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Conflicting PRs (not included): - PR 14 manics 'Add pre-commit (black, flake8)' Generated by OMERO-plugins-push#52 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/52/)' 2026-02-11 00:48:32,609 [ scc.git] DEBUG [detached HEAD 4e9cf66] merge master -Dorg -Ssuccess-only 2026-02-11 00:48:32,609 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:48:32,610 [ scc.repo] DEBUG ## PRs found: 2026-02-11 00:48:33,138 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None 2026-02-11 00:48:33,658 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None 2026-02-11 00:48:34,120 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None 2026-02-11 00:48:34,576 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74/comments HTTP/1.1" 200 None 2026-02-11 00:48:35,091 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None 2026-02-11 00:48:35,584 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:48:36,086 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-11 00:48:36,087 [ scc.repo] DEBUG ## Branches found: 2026-02-11 00:48:36,087 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra 2026-02-11 00:48:36,087 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:48:36,087 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:48:36,089 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-02-11 00:48:36,091 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-02-11 00:48:36,092 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-02-11 00:48:36,094 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-02-11 00:48:36,101 [ scc.git] DEBUG Updating cda3ec6..c8a0015 2026-02-11 00:48:36,787 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/84 HTTP/1.1" 200 None 2026-02-11 00:48:37,592 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/82 HTTP/1.1" 200 None 2026-02-11 00:48:38,402 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/81 HTTP/1.1" 200 None 2026-02-11 00:48:38,477 [ scc.git] DEBUG ## Unique users: [] 2026-02-11 00:48:38,477 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:48:38,477 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:48:38,480 [ scc.git] DEBUG Calling 'git submodule update' 2026-02-11 00:48:38,517 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:48:38,517 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:48:38,519 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-11 00:48:38,557 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-02-11 00:48:38,561 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f17696f7610> has no local changes 2026-02-11 00:48:38,561 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: openmicroscopy/omero-test-infra Excluded PRs: - PR 75 marimeireles 'Microservices' (user: marimeireles) - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure) Updating cda3ec6..c8a0015 Previously merged: - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT' - PR 82 jburel 'Upgrade python' - PR 81 erickmartins 'add ulimits to omero-server container' Generated by OMERO-plugins-push#52 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/52/)' 2026-02-11 00:48:38,566 [ scc.git] DEBUG [detached HEAD ec2bd42] merge master -Dorg -Ssuccess-only 2026-02-11 00:48:38,566 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:48:38,567 [ scc.repo] DEBUG ## PRs found: 2026-02-11 00:48:39,006 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 None 2026-02-11 00:48:39,507 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/issues/14 HTTP/1.1" 200 None 2026-02-11 00:48:39,508 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-11 00:48:40,111 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None 2026-02-11 00:48:40,612 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:48:41,129 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-11 00:48:41,831 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None 2026-02-11 00:48:42,253 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/statuses/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?per_page=1 HTTP/1.1" 200 2 2026-02-11 00:48:42,254 [ scc.repo] DEBUG - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-02-11 00:48:42,254 [ scc.repo] DEBUG ## Branches found: 2026-02-11 00:48:42,254 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload 2026-02-11 00:48:42,254 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:48:42,254 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:48:42,256 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-02-11 00:48:42,259 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-02-11 00:48:42,259 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-02-11 00:48:42,261 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-02-11 00:48:42,264 [ scc.git] DEBUG Already up to date. 2026-02-11 00:48:42,264 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head' 2026-02-11 00:48:42,676 [ scc.git] DEBUG From https://github.com/ome/omero-upload 2026-02-11 00:48:42,676 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD 2026-02-11 00:48:42,679 [ scc.git] DEBUG ## Unique users: [] 2026-02-11 00:48:42,679 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:48:42,679 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:48:42,681 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1a4dbe9a31854f4f65c509ea929debf3319ba1ea' 2026-02-11 00:48:42,684 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:48:42,686 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 1a4dbe9a31854f4f65c509ea929debf3319ba1ea' 2026-02-11 00:48:42,692 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-11 00:48:42,694 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-02-11 00:48:42,694 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-02-11 00:48:42,840 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:48:42,840 [ scc.git] DEBUG Calling 'git submodule update' 2026-02-11 00:48:42,877 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:48:42,878 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:48:42,880 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-11 00:48:42,916 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-02-11 00:48:42,919 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f1768524850> has no local changes 2026-02-11 00:48:42,919 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-upload Already up to date. Merged PRs: - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#52 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/52/)' 2026-02-11 00:48:42,924 [ scc.git] DEBUG [detached HEAD 6f4015a] merge master -Dorg -Ssuccess-only 2026-02-11 00:48:42,925 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:48:42,925 [ scc.repo] DEBUG ## PRs found: 2026-02-11 00:48:43,340 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 None 2026-02-11 00:48:43,846 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/issues/22 HTTP/1.1" 200 None 2026-02-11 00:48:43,846 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-11 00:48:44,478 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None 2026-02-11 00:48:44,992 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:48:45,523 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-11 00:48:46,074 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None 2026-02-11 00:48:46,497 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/statuses/2ee819462af52bf2878fadf06d6ebdbafb8f1902?per_page=1 HTTP/1.1" 200 2 2026-02-11 00:48:46,497 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-02-11 00:48:46,497 [ scc.repo] DEBUG ## Branches found: 2026-02-11 00:48:46,497 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope 2026-02-11 00:48:46,497 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:48:46,497 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:48:46,500 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-02-11 00:48:46,502 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-02-11 00:48:46,502 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-02-11 00:48:46,505 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-02-11 00:48:46,511 [ scc.git] DEBUG Updating deab817..160d894 2026-02-11 00:48:47,210 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None 2026-02-11 00:48:47,287 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head' 2026-02-11 00:48:47,566 [ scc.git] DEBUG From https://github.com/ome/omero-virtual-microscope 2026-02-11 00:48:47,566 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD 2026-02-11 00:48:47,569 [ scc.git] DEBUG ## Unique users: [] 2026-02-11 00:48:47,570 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:48:47,570 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:48:47,572 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee819462af52bf2878fadf06d6ebdbafb8f1902' 2026-02-11 00:48:47,574 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:48:47,576 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 2ee819462af52bf2878fadf06d6ebdbafb8f1902' 2026-02-11 00:48:47,582 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-11 00:48:47,585 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-02-11 00:48:47,585 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-02-11 00:48:47,740 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:48:47,741 [ scc.git] DEBUG Calling 'git submodule update' 2026-02-11 00:48:47,779 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:48:47,779 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:48:47,782 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-11 00:48:47,818 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-02-11 00:48:47,821 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f1768566390> has no local changes 2026-02-11 00:48:47,821 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-virtual-microscope Updating deab817..160d894 Previously merged: - PR 20 jburel 'Build' Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#52 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/52/)' 2026-02-11 00:48:47,827 [ scc.git] DEBUG [detached HEAD 6c29e85] merge master -Dorg -Ssuccess-only 2026-02-11 00:48:47,828 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:48:47,828 [ scc.git] INFO Overriding base-branch from master to main 2026-02-11 00:48:47,828 [ scc.repo] DEBUG ## PRs found: 2026-02-11 00:48:48,257 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None 2026-02-11 00:48:48,747 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None 2026-02-11 00:48:49,220 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21/comments HTTP/1.1" 200 None 2026-02-11 00:48:49,748 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None 2026-02-11 00:48:50,211 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:48:50,728 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-11 00:48:51,269 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None 2026-02-11 00:48:51,720 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/d07067753650282c9e8cdbbeae37897b7ed0d4cc?per_page=1 HTTP/1.1" 200 2 2026-02-11 00:48:51,720 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import' 2026-02-11 00:48:52,204 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None 2026-02-11 00:48:52,708 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None 2026-02-11 00:48:53,188 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None 2026-02-11 00:48:53,767 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None 2026-02-11 00:48:54,217 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:48:54,756 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None 2026-02-11 00:48:55,185 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2 2026-02-11 00:48:55,185 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' 2026-02-11 00:48:55,186 [ scc.repo] DEBUG ## Branches found: 2026-02-11 00:48:55,186 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr 2026-02-11 00:48:55,186 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:48:55,186 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:48:55,188 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main' 2026-02-11 00:48:55,191 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-02-11 00:48:55,191 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main' 2026-02-11 00:48:55,193 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main' 2026-02-11 00:48:55,200 [ scc.git] DEBUG Updating 8f3c313..4e1e685 2026-02-11 00:48:55,870 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/23 HTTP/1.1" 200 None 2026-02-11 00:48:56,630 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/20 HTTP/1.1" 200 None 2026-02-11 00:48:56,705 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head' 2026-02-11 00:48:57,058 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr 2026-02-11 00:48:57,058 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD 2026-02-11 00:48:57,062 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head' 2026-02-11 00:48:57,670 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr 2026-02-11 00:48:57,670 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD 2026-02-11 00:48:57,674 [ scc.git] DEBUG ## Unique users: [] 2026-02-11 00:48:57,674 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:48:57,674 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:48:57,676 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8' 2026-02-11 00:48:57,679 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:48:57,681 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8' 2026-02-11 00:48:57,724 [ scc.git] DEBUG Auto-merging README.rst 2026-02-11 00:48:57,724 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py 2026-02-11 00:48:57,724 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py 2026-02-11 00:48:57,724 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py 2026-02-11 00:48:57,724 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-02-11 00:48:57,725 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-02-11 00:48:57,727 [ scc.git] DEBUG Calling 'git reset --hard 4e1e685dff22136abfd2626f6fd6eaf985aba368' 2026-02-11 00:48:57,731 [ scc.git] DEBUG HEAD is now at 4e1e685 Merge pull request #23 from lubianat/patch-1 2026-02-11 00:48:57,886 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:48:57,886 [ scc.git] DEBUG Calling 'git merge-base 4e1e685dff22136abfd2626f6fd6eaf985aba368 85cf4c893f393da6763bf4cee2a308832a41a9e8' 2026-02-11 00:48:57,889 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..4e1e685dff22136abfd2626f6fd6eaf985aba368' 2026-02-11 00:48:57,892 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' Conflicting PR. Removed from build [OMERO-plugins-push#52](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/52/). See the [console output](https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/52/consoleText) for more details. Possible conflicts: - Upstream changes - omero_web_zarr/urls.py --conflicts 2026-02-11 00:48:57,894 [ scc.config] DEBUG Found github.token 2026-02-11 00:48:57,894 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts. 2026-02-11 00:48:57,894 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d07067753650282c9e8cdbbeae37897b7ed0d4cc' 2026-02-11 00:48:57,896 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:48:57,898 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) d07067753650282c9e8cdbbeae37897b7ed0d4cc' 2026-02-11 00:48:57,907 [ scc.git] DEBUG Auto-merging README.rst 2026-02-11 00:48:57,907 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py 2026-02-11 00:48:57,908 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-11 00:48:57,911 [ scc.git] DEBUG README.rst | 3 + 2026-02-11 00:48:57,911 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++ 2026-02-11 00:48:57,911 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 + 2026-02-11 00:48:57,911 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++- 2026-02-11 00:48:57,911 [ scc.git] DEBUG setup.py | 5 +- 2026-02-11 00:48:57,911 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-) 2026-02-11 00:48:57,911 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html 2026-02-11 00:48:58,281 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:48:58,281 [ scc.git] DEBUG Calling 'git submodule update' 2026-02-11 00:48:58,318 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:48:58,318 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:48:58,320 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-11 00:48:58,355 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-02-11 00:48:58,358 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f176851fb10> has no local changes 2026-02-11 00:48:58,358 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-web-zarr Excluded PRs: - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft) Updating 8f3c313..4e1e685 Previously merged: - PR 23 lubianat 'Fix mix of .rst and .md on README' - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints' Merged PRs: - PR 21 will-moore 'Web zarr import' Conflicting PRs (not included): - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' Generated by OMERO-plugins-push#52 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/52/)' 2026-02-11 00:48:58,364 [ scc.git] DEBUG [detached HEAD 13d1a4e] merge master -Dorg -Ssuccess-only 2026-02-11 00:48:58,364 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:48:58,364 [ scc.repo] DEBUG ## PRs found: 2026-02-11 00:48:58,767 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 None 2026-02-11 00:48:59,266 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/issues/25 HTTP/1.1" 200 None 2026-02-11 00:48:59,266 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-11 00:48:59,828 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None 2026-02-11 00:49:00,355 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:49:01,025 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-11 00:49:01,596 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None 2026-02-11 00:49:02,040 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/statuses/c73bedb717b9ecce0af666245d3486aa5a2dafe9?per_page=1 HTTP/1.1" 200 2 2026-02-11 00:49:02,040 [ scc.repo] DEBUG - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-02-11 00:49:02,040 [ scc.repo] DEBUG ## Branches found: 2026-02-11 00:49:02,040 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror 2026-02-11 00:49:02,040 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:49:02,040 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:49:02,043 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-02-11 00:49:02,045 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-02-11 00:49:02,045 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-02-11 00:49:02,047 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-02-11 00:49:02,050 [ scc.git] DEBUG Already up to date. 2026-02-11 00:49:02,050 [ scc.git] DEBUG Calling 'git fetch origin pull/25/head' 2026-02-11 00:49:02,325 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-weberror 2026-02-11 00:49:02,325 [ scc.git] DEBUG * branch refs/pull/25/head -> FETCH_HEAD 2026-02-11 00:49:02,328 [ scc.git] DEBUG ## Unique users: [] 2026-02-11 00:49:02,329 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:49:02,329 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:49:02,331 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c73bedb717b9ecce0af666245d3486aa5a2dafe9' 2026-02-11 00:49:02,333 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:49:02,335 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) c73bedb717b9ecce0af666245d3486aa5a2dafe9' 2026-02-11 00:49:02,341 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-11 00:49:02,344 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-02-11 00:49:02,344 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-02-11 00:49:02,507 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:49:02,507 [ scc.git] DEBUG Calling 'git submodule update' 2026-02-11 00:49:02,543 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:49:02,543 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:49:02,545 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-11 00:49:02,582 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-02-11 00:49:02,585 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f176851c910> has no local changes 2026-02-11 00:49:02,585 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: openmicroscopy/omero-weberror Already up to date. Merged PRs: - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#52 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/52/)' 2026-02-11 00:49:02,590 [ scc.git] DEBUG [detached HEAD 7ae2ddf] merge master -Dorg -Ssuccess-only 2026-02-11 00:49:02,590 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:49:02,590 [ scc.repo] DEBUG ## PRs found: 2026-02-11 00:49:03,030 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 None 2026-02-11 00:49:03,511 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/issues/37 HTTP/1.1" 200 None 2026-02-11 00:49:03,511 [ scc.repo] DEBUG # ... Include label: dependencies 2026-02-11 00:49:04,115 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None 2026-02-11 00:49:04,619 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-02-11 00:49:05,109 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-02-11 00:49:05,585 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None 2026-02-11 00:49:06,164 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/statuses/8cf5f7e65ae8e945b134e41e77bc13a785aff478?per_page=1 HTTP/1.1" 200 2 2026-02-11 00:49:06,165 [ scc.repo] DEBUG - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-02-11 00:49:06,165 [ scc.repo] DEBUG ## Branches found: 2026-02-11 00:49:06,165 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest 2026-02-11 00:49:06,165 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:49:06,165 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:49:06,167 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-02-11 00:49:06,169 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-02-11 00:49:06,170 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-02-11 00:49:06,172 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-02-11 00:49:06,175 [ scc.git] DEBUG Already up to date. 2026-02-11 00:49:06,175 [ scc.git] DEBUG Calling 'git fetch origin pull/37/head' 2026-02-11 00:49:06,455 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-webtest 2026-02-11 00:49:06,455 [ scc.git] DEBUG * branch refs/pull/37/head -> FETCH_HEAD 2026-02-11 00:49:06,459 [ scc.git] DEBUG ## Unique users: [] 2026-02-11 00:49:06,459 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:49:06,460 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:49:06,462 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8cf5f7e65ae8e945b134e41e77bc13a785aff478' 2026-02-11 00:49:06,464 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:49:06,466 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 37 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8cf5f7e65ae8e945b134e41e77bc13a785aff478' 2026-02-11 00:49:06,473 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-02-11 00:49:06,475 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-02-11 00:49:06,475 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-02-11 00:49:06,632 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:49:06,632 [ scc.git] DEBUG Calling 'git submodule update' 2026-02-11 00:49:06,670 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:49:06,670 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:49:06,672 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-11 00:49:06,709 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-02-11 00:49:06,712 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f176856fcd0> has no local changes 2026-02-11 00:49:06,712 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: openmicroscopy/omero-webtest Already up to date. Merged PRs: - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#52 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/52/)' 2026-02-11 00:49:06,718 [ scc.git] DEBUG [detached HEAD 1820cb7] merge master -Dorg -Ssuccess-only 2026-02-11 00:49:06,718 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:49:06,719 [ scc.repo] DEBUG ## PRs found: 2026-02-11 00:49:07,203 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 2 2026-02-11 00:49:07,203 [ scc.repo] DEBUG ## Branches found: 2026-02-11 00:49:07,203 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway 2026-02-11 00:49:07,203 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:49:07,203 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:49:07,206 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-02-11 00:49:07,208 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-02-11 00:49:07,208 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-02-11 00:49:07,210 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-02-11 00:49:07,213 [ scc.git] DEBUG Already up to date. 2026-02-11 00:49:07,213 [ scc.git] DEBUG ## Unique users: [] 2026-02-11 00:49:07,213 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:49:07,213 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:49:07,215 [ scc.git] DEBUG Calling 'git submodule update' 2026-02-11 00:49:07,251 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:49:07,251 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:49:07,253 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-11 00:49:07,287 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-02-11 00:49:07,290 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f1768585610> has no local changes 2026-02-11 00:49:07,290 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/rOMERO-gateway Already up to date. Generated by OMERO-plugins-push#52 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/52/)' 2026-02-11 00:49:07,296 [ scc.git] DEBUG [detached HEAD 1853e3f] merge master -Dorg -Ssuccess-only 2026-02-11 00:49:07,296 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:49:07,296 [ scc.git] INFO Overriding base-branch from master to develop 2026-02-11 00:49:07,296 [ scc.repo] DEBUG ## PRs found: 2026-02-11 00:49:07,726 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None 2026-02-11 00:49:08,248 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None 2026-02-11 00:49:08,734 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None 2026-02-11 00:49:08,736 [ scc.repo] DEBUG ## Branches found: 2026-02-11 00:49:08,736 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts 2026-02-11 00:49:08,736 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:49:08,736 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:49:08,738 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop' 2026-02-11 00:49:08,741 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-02-11 00:49:08,741 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop' 2026-02-11 00:49:08,744 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop' 2026-02-11 00:49:08,755 [ scc.git] DEBUG Updating 4b4c755..5b4d768 2026-02-11 00:49:09,400 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/231 HTTP/1.1" 200 None 2026-02-11 00:49:10,267 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/229 HTTP/1.1" 200 None 2026-02-11 00:49:11,055 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/223 HTTP/1.1" 200 None 2026-02-11 00:49:11,913 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/230 HTTP/1.1" 200 None 2026-02-11 00:49:12,719 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/228 HTTP/1.1" 200 None 2026-02-11 00:49:13,510 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None 2026-02-11 00:49:14,282 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None 2026-02-11 00:49:14,283 [ scc.git] DEBUG ## Unique users: [] 2026-02-11 00:49:14,283 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:49:14,284 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:49:14,286 [ scc.git] DEBUG Calling 'git submodule update' 2026-02-11 00:49:14,324 [ scc.git] DEBUG Get sha1 of %s 2026-02-11 00:49:14,324 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-02-11 00:49:14,326 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-11 00:49:14,362 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-02-11 00:49:14,365 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f17683b4890> has no local changes 2026-02-11 00:49:14,365 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/scripts Excluded PRs: - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn) Updating 4b4c755..5b4d768 Previously merged: - PR 231 jburel 'Create Release ' - PR 229 Rdornier 'Adding support for custom user label' - PR 223 will-moore 'don't attempt ROI stats on big images' - PR 230 Rdornier 'Import from csv fix' - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows' - PR 227 jburel 'Replace tostring by tobytes' - PR 225 will-moore 'Fix param names and assertion texts in tests' Generated by OMERO-plugins-push#52 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/52/)' 2026-02-11 00:49:14,371 [ scc.git] DEBUG [detached HEAD b5f796e] merge master -Dorg -Ssuccess-only 2026-02-11 00:49:14,371 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:49:14,371 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-02-11 00:49:14,441 [ scc.config] DEBUG Found submodule.minimal-omero-client.url 2026-02-11 00:49:14,690 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:49:14,694 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch 2026-02-11 00:49:14,696 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url 2026-02-11 00:49:15,087 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:49:15,092 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch 2026-02-11 00:49:15,094 [ scc.config] DEBUG Found submodule.omero-cli-render.url 2026-02-11 00:49:15,488 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:49:15,493 [ scc.config] DEBUG Found submodule.omero-cli-render.branch 2026-02-11 00:49:15,495 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url 2026-02-11 00:49:15,887 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:49:15,893 [ scc.config] DEBUG Found submodule.omero-figure.url 2026-02-11 00:49:16,284 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:49:16,288 [ scc.config] DEBUG Found submodule.omero-figure.branch 2026-02-11 00:49:16,290 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url 2026-02-11 00:49:16,680 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:49:16,685 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch 2026-02-11 00:49:16,687 [ scc.config] DEBUG Found submodule.omero-gallery.url 2026-02-11 00:49:17,108 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:49:17,113 [ scc.config] DEBUG Found submodule.omero-gallery.branch 2026-02-11 00:49:17,115 [ scc.config] DEBUG Found submodule.omero-iviewer.url 2026-02-11 00:49:17,501 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:49:17,506 [ scc.config] DEBUG Found submodule.omero-iviewer.branch 2026-02-11 00:49:17,508 [ scc.config] DEBUG Found submodule.omero-mapr.url 2026-02-11 00:49:17,895 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:49:17,900 [ scc.config] DEBUG Found submodule.omero-mapr.branch 2026-02-11 00:49:17,902 [ scc.config] DEBUG Found submodule.omero-metadata.url 2026-02-11 00:49:18,308 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:49:18,313 [ scc.config] DEBUG Found submodule.omero-metadata.branch 2026-02-11 00:49:18,315 [ scc.config] DEBUG Found submodule.omero-parade.url 2026-02-11 00:49:18,705 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:49:18,710 [ scc.config] DEBUG Found submodule.omero-parade.branch 2026-02-11 00:49:18,711 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url 2026-02-11 00:49:19,119 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:49:19,123 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch 2026-02-11 00:49:19,125 [ scc.config] DEBUG Found submodule.omero-rois.url 2026-02-11 00:49:19,518 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:49:19,524 [ scc.config] DEBUG Found submodule.omero-signup.url 2026-02-11 00:49:19,913 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:49:19,920 [ scc.config] DEBUG Found submodule.omero-test-infra.url 2026-02-11 00:49:20,326 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:49:20,331 [ scc.config] DEBUG Found submodule.omero-test-infra.branch 2026-02-11 00:49:20,333 [ scc.config] DEBUG Found submodule.omero-upload.url 2026-02-11 00:49:20,755 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:49:20,761 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url 2026-02-11 00:49:21,151 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:49:21,157 [ scc.config] DEBUG Found submodule.omero-web-zarr.url 2026-02-11 00:49:21,554 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:49:21,558 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch 2026-02-11 00:49:21,560 [ scc.config] DEBUG Found submodule.omero-weberror.url 2026-02-11 00:49:21,966 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:49:21,970 [ scc.config] DEBUG Found submodule.omero-weberror.branch 2026-02-11 00:49:21,972 [ scc.config] DEBUG Found submodule.omero-webtest.url 2026-02-11 00:49:22,373 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:49:22,378 [ scc.config] DEBUG Found submodule.omero-webtest.branch 2026-02-11 00:49:22,379 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url 2026-02-11 00:49:22,770 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:49:22,774 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch 2026-02-11 00:49:22,776 [ scc.config] DEBUG Found submodule.scripts.url 2026-02-11 00:49:23,265 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-02-11 00:49:23,270 [ scc.config] DEBUG Found submodule.scripts.branch 2026-02-11 00:49:23,270 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-02-11 00:49:23,343 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f17695c44d0> has local changes 2026-02-11 00:49:23,343 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-plugins Already up to date. Merged PRs: - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' Repository: ome/minimal-omero-client Already up to date. Repository: ome/omero-cli-duplicate Excluded PRs: - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment) Already up to date. Merged PRs: - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-cli-render Excluded PRs: - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft) Updating ce6e13c..68b7303 Previously merged: - PR 74 jburel 'Replace manual changelog by automated GH release step' - PR 75 jburel 'Sort the new channels to ensure settings are set' - PR 71 dominikl 'Escape slash character in image names' - PR 69 dominikl 'Fix help text for impo/export commands' Merged PRs: - PR 59 will-moore 'Apply settings to Plate' Repository: ome/omero-cli-zarr Excluded PRs: - PR 181 will-moore 'Add labels support for import' (exclude comment) - PR 170 will-moore 'Use ome zarr models py' (stage: draft) - PR 167 dominikl 'Add extinfo command' (stage: draft) - PR 166 will-moore 'Downsample scale option' (stage: draft) - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment) Updating 11d3587..9530c10 Previously merged: - PR 192 jburel 'Set Omero pixel size' - PR 186 jburel 'Create release from tag' - PR 187 dominikl 'Fix target-by-name option' - PR 180 will-moore 'Import command' - PR 179 will-moore 'Changelog 0.6.0' - PR 177 jburel 'Replace fromstring by frombuffer' - PR 175 will-moore 'Pin ome-zarr-py <0.12.0' - PR 147 will-moore 'Name option' - PR 173 will-moore 'Add test_export_plate_polygons()' - PR 171 will-moore 'Initial addition of integration tests' - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' Conflicting PRs (not included): - PR 174 will-moore 'Skip wells' - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' - PR 182 will-moore 'Revert "Remove support for Plate import"' Repository: ome/omero-figure Excluded PRs: - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier) Updating 9cc36cde..e241dc01 Previously merged: - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540' - PR 661 Rdornier 'Align to grid - check if panels are already in the grid' - PR 649 jburel 'Replace manual changelog by automated GH release step' - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout' - PR 637 Rdornier 'Fix scalebar position' - PR 600 Rdornier 'Label on rois' - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles' - PR 651 Rdornier 'More compliant align to grid' - PR 650 jburel 'Bump Python version' - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…' - PR 610 will-moore 'Add docs/contributing.rst' - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1' - PR 646 JensWendt 'fix word wrap of image names' - PR 612 will-moore 'Script version' - PR 630 will-moore 'Fix color and position for ALL new panel insets' - PR 616 Rdornier 'Fix labels around border' - PR 605 Tom-TBT 'Colorbar feature' - PR 638 Rdornier 'Fix arrow opacity' - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4' - PR 635 dependabot[bot] 'Bump esbuild and vite' - PR 623 will-moore 'Fix wrapping of label X button. see issues/622' - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 ' - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes' - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO' - PR 662 will-moore 'Export script runnable without OMERO' - PR 663 will-moore 'Zarr' - PR 666 will-moore 'Standalone app' - PR 667 Tom-TBT 'Label suggestion interface' Conflicting PRs (not included): - PR 664 Nirkan 'Handle many channels ' - PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID' Repository: ome/omero-fpbioimage Already up to date. Merged PRs: - PR 18 jburel 'default size z value' - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-gallery Already up to date. Merged PRs: - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - PR 114 dependabot[bot] 'Bump tar and fsevents' - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' Conflicting PRs (not included): - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' Repository: ome/omero-iviewer Excluded PRs: - PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft) - PR 508 will-moore 'Broadcast channel demo' (stage: draft) - PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft) - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft) - PR 420 will-moore 'Add release process to README' (exclude comment) - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment) - PR 227 will-moore 'Vectortile investigation' (status: failure) Updating 7a798ce..5e2de43 Previously merged: - PR 510 joshmoore 'Re-enable omero-test-infra' - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 460 will-moore 'Channel min spinner fix' - PR 465 will-moore 'Save as Figure' - PR 471 will-moore 'Z projection disabled tooltip' - PR 499 dependabot[bot] 'Bump nanoid and mocha' - PR 512 jburel 'Replace manual changelog by automated GH release step' - PR 513 jburel 'Bump Python version' Conflicting PRs (not included): - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha' Repository: ome/omero-mapr Excluded PRs: - PR 79 will-moore 'Right panel title' (exclude comment) Already up to date. Merged PRs: - PR 74 will-moore 'mapr extension of webclient' - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Conflicting PRs (not included): - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-metadata Updating 3cd120c..55060a2 Previously merged: - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 92 dominikl 'add resolve_rois to projectwrapper' Conflicting PRs (not included): - PR 55 kkoz 'Prevent users from creating columns with python keyword names' - PR 64 will-moore 'Support images_by_name for Screen and Plate' Repository: ome/omero-parade Excluded PRs: - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft) - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment) - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment) - PR 39 chris-allan 'Expand all for Screens' (exclude comment) Already up to date. Merged PRs: - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Repository: ome/omero-prometheus-tools Already up to date. Merged PRs: - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-rois Excluded PRs: - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) Already up to date. Merged PRs: - PR 33 jo-mueller 'Add roi to array functions' - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-signup Already up to date. Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Conflicting PRs (not included): - PR 14 manics 'Add pre-commit (black, flake8)' Repository: openmicroscopy/omero-test-infra Excluded PRs: - PR 75 marimeireles 'Microservices' (user: marimeireles) - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure) Updating cda3ec6..c8a0015 Previously merged: - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT' - PR 82 jburel 'Upgrade python' - PR 81 erickmartins 'add ulimits to omero-server container' Repository: ome/omero-upload Already up to date. Merged PRs: - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-virtual-microscope Updating deab817..160d894 Previously merged: - PR 20 jburel 'Build' Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-web-zarr Excluded PRs: - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft) Updating 8f3c313..4e1e685 Previously merged: - PR 23 lubianat 'Fix mix of .rst and .md on README' - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints' Merged PRs: - PR 21 will-moore 'Web zarr import' Conflicting PRs (not included): - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' Repository: openmicroscopy/omero-weberror Already up to date. Merged PRs: - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: openmicroscopy/omero-webtest Already up to date. Merged PRs: - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/rOMERO-gateway Already up to date. Repository: ome/scripts Excluded PRs: - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn) Updating 4b4c755..5b4d768 Previously merged: - PR 231 jburel 'Create Release ' - PR 229 Rdornier 'Adding support for custom user label' - PR 223 will-moore 'don't attempt ROI stats on big images' - PR 230 Rdornier 'Import from csv fix' - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows' - PR 227 jburel 'Replace tostring by tobytes' - PR 225 will-moore 'Fix param names and assertion texts in tests' Generated by OMERO-plugins-push#52 (https://BRANCHCI.openmicroscopy.org/jenkins/job/OMERO-plugins-push/52/)' 2026-02-11 00:49:23,354 [ scc.git] DEBUG [detached HEAD a333c2d] merge master -Dorg -Ssuccess-only 2026-02-11 00:49:23,354 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-) 2026-02-11 00:49:23,354 [ scc.merge] INFO Repository: ome/omero-plugins 2026-02-11 00:49:23,354 [ scc.merge] INFO Already up to date. 2026-02-11 00:49:23,354 [ scc.merge] INFO 2026-02-11 00:49:23,354 [ scc.merge] INFO Merged PRs: 2026-02-11 00:49:23,354 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2026-02-11 00:49:23,354 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2026-02-11 00:49:23,354 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2026-02-11 00:49:23,354 [ scc.merge] INFO 2026-02-11 00:49:23,354 [ scc.merge] INFO Repository: ome/minimal-omero-client 2026-02-11 00:49:23,354 [ scc.merge] INFO Already up to date. 2026-02-11 00:49:23,354 [ scc.merge] INFO 2026-02-11 00:49:23,354 [ scc.merge] INFO 2026-02-11 00:49:23,354 [ scc.merge] INFO Repository: ome/omero-cli-duplicate 2026-02-11 00:49:23,354 [ scc.merge] INFO Excluded PRs: 2026-02-11 00:49:23,354 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment) 2026-02-11 00:49:23,354 [ scc.merge] INFO Already up to date. 2026-02-11 00:49:23,354 [ scc.merge] INFO 2026-02-11 00:49:23,354 [ scc.merge] INFO Merged PRs: 2026-02-11 00:49:23,354 [ scc.merge] INFO - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-02-11 00:49:23,354 [ scc.merge] INFO 2026-02-11 00:49:23,354 [ scc.merge] INFO Repository: ome/omero-cli-render 2026-02-11 00:49:23,354 [ scc.merge] INFO Excluded PRs: 2026-02-11 00:49:23,354 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft) 2026-02-11 00:49:23,354 [ scc.merge] INFO Updating ce6e13c..68b7303 2026-02-11 00:49:23,355 [ scc.merge] INFO Previously merged: 2026-02-11 00:49:23,355 [ scc.merge] INFO - PR 74 jburel 'Replace manual changelog by automated GH release step' 2026-02-11 00:49:23,355 [ scc.merge] INFO - PR 75 jburel 'Sort the new channels to ensure settings are set' 2026-02-11 00:49:23,355 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names' 2026-02-11 00:49:23,355 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands' 2026-02-11 00:49:23,355 [ scc.merge] INFO 2026-02-11 00:49:23,355 [ scc.merge] INFO Merged PRs: 2026-02-11 00:49:23,355 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate' 2026-02-11 00:49:23,355 [ scc.merge] INFO 2026-02-11 00:49:23,355 [ scc.merge] INFO Repository: ome/omero-cli-zarr 2026-02-11 00:49:23,355 [ scc.merge] INFO Excluded PRs: 2026-02-11 00:49:23,355 [ scc.merge] INFO - PR 181 will-moore 'Add labels support for import' (exclude comment) 2026-02-11 00:49:23,355 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft) 2026-02-11 00:49:23,355 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft) 2026-02-11 00:49:23,355 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft) 2026-02-11 00:49:23,355 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) 2026-02-11 00:49:23,355 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment) 2026-02-11 00:49:23,355 [ scc.merge] INFO Updating 11d3587..9530c10 2026-02-11 00:49:23,355 [ scc.merge] INFO Previously merged: 2026-02-11 00:49:23,355 [ scc.merge] INFO - PR 192 jburel 'Set Omero pixel size' 2026-02-11 00:49:23,355 [ scc.merge] INFO - PR 186 jburel 'Create release from tag' 2026-02-11 00:49:23,355 [ scc.merge] INFO - PR 187 dominikl 'Fix target-by-name option' 2026-02-11 00:49:23,355 [ scc.merge] INFO - PR 180 will-moore 'Import command' 2026-02-11 00:49:23,355 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0' 2026-02-11 00:49:23,355 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer' 2026-02-11 00:49:23,355 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0' 2026-02-11 00:49:23,355 [ scc.merge] INFO - PR 147 will-moore 'Name option' 2026-02-11 00:49:23,355 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()' 2026-02-11 00:49:23,355 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests' 2026-02-11 00:49:23,355 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-02-11 00:49:23,355 [ scc.merge] INFO 2026-02-11 00:49:23,355 [ scc.merge] INFO Merged PRs: 2026-02-11 00:49:23,355 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' 2026-02-11 00:49:23,355 [ scc.merge] INFO 2026-02-11 00:49:23,355 [ scc.merge] INFO Conflicting PRs (not included): 2026-02-11 00:49:23,355 [ scc.merge] INFO - PR 174 will-moore 'Skip wells' 2026-02-11 00:49:23,355 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' 2026-02-11 00:49:23,355 [ scc.merge] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"' 2026-02-11 00:49:23,355 [ scc.merge] INFO 2026-02-11 00:49:23,355 [ scc.merge] INFO Repository: ome/omero-figure 2026-02-11 00:49:23,355 [ scc.merge] INFO Excluded PRs: 2026-02-11 00:49:23,355 [ scc.merge] INFO - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier) 2026-02-11 00:49:23,355 [ scc.merge] INFO Updating 9cc36cde..e241dc01 2026-02-11 00:49:23,355 [ scc.merge] INFO Previously merged: 2026-02-11 00:49:23,355 [ scc.merge] INFO - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540' 2026-02-11 00:49:23,355 [ scc.merge] INFO - PR 661 Rdornier 'Align to grid - check if panels are already in the grid' 2026-02-11 00:49:23,355 [ scc.merge] INFO - PR 649 jburel 'Replace manual changelog by automated GH release step' 2026-02-11 00:49:23,355 [ scc.merge] INFO - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout' 2026-02-11 00:49:23,355 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position' 2026-02-11 00:49:23,355 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois' 2026-02-11 00:49:23,356 [ scc.merge] INFO - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles' 2026-02-11 00:49:23,356 [ scc.merge] INFO - PR 651 Rdornier 'More compliant align to grid' 2026-02-11 00:49:23,356 [ scc.merge] INFO - PR 650 jburel 'Bump Python version' 2026-02-11 00:49:23,356 [ scc.merge] INFO - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…' 2026-02-11 00:49:23,356 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst' 2026-02-11 00:49:23,356 [ scc.merge] INFO - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1' 2026-02-11 00:49:23,356 [ scc.merge] INFO - PR 646 JensWendt 'fix word wrap of image names' 2026-02-11 00:49:23,356 [ scc.merge] INFO - PR 612 will-moore 'Script version' 2026-02-11 00:49:23,356 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets' 2026-02-11 00:49:23,356 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border' 2026-02-11 00:49:23,356 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature' 2026-02-11 00:49:23,356 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity' 2026-02-11 00:49:23,356 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4' 2026-02-11 00:49:23,356 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite' 2026-02-11 00:49:23,356 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622' 2026-02-11 00:49:23,356 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-02-11 00:49:23,356 [ scc.merge] INFO 2026-02-11 00:49:23,356 [ scc.merge] INFO Merged PRs: 2026-02-11 00:49:23,356 [ scc.merge] INFO - PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 ' 2026-02-11 00:49:23,356 [ scc.merge] INFO - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes' 2026-02-11 00:49:23,356 [ scc.merge] INFO - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO' 2026-02-11 00:49:23,356 [ scc.merge] INFO - PR 662 will-moore 'Export script runnable without OMERO' 2026-02-11 00:49:23,356 [ scc.merge] INFO - PR 663 will-moore 'Zarr' 2026-02-11 00:49:23,356 [ scc.merge] INFO - PR 666 will-moore 'Standalone app' 2026-02-11 00:49:23,356 [ scc.merge] INFO - PR 667 Tom-TBT 'Label suggestion interface' 2026-02-11 00:49:23,356 [ scc.merge] INFO 2026-02-11 00:49:23,356 [ scc.merge] INFO Conflicting PRs (not included): 2026-02-11 00:49:23,356 [ scc.merge] INFO - PR 664 Nirkan 'Handle many channels ' 2026-02-11 00:49:23,356 [ scc.merge] INFO - PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID' 2026-02-11 00:49:23,356 [ scc.merge] INFO 2026-02-11 00:49:23,356 [ scc.merge] INFO Repository: ome/omero-fpbioimage 2026-02-11 00:49:23,356 [ scc.merge] INFO Already up to date. 2026-02-11 00:49:23,356 [ scc.merge] INFO 2026-02-11 00:49:23,356 [ scc.merge] INFO Merged PRs: 2026-02-11 00:49:23,356 [ scc.merge] INFO - PR 18 jburel 'default size z value' 2026-02-11 00:49:23,356 [ scc.merge] INFO - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-02-11 00:49:23,356 [ scc.merge] INFO 2026-02-11 00:49:23,356 [ scc.merge] INFO Repository: ome/omero-gallery 2026-02-11 00:49:23,356 [ scc.merge] INFO Already up to date. 2026-02-11 00:49:23,356 [ scc.merge] INFO 2026-02-11 00:49:23,356 [ scc.merge] INFO Merged PRs: 2026-02-11 00:49:23,356 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' 2026-02-11 00:49:23,356 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents' 2026-02-11 00:49:23,356 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' 2026-02-11 00:49:23,356 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' 2026-02-11 00:49:23,356 [ scc.merge] INFO 2026-02-11 00:49:23,356 [ scc.merge] INFO Conflicting PRs (not included): 2026-02-11 00:49:23,356 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' 2026-02-11 00:49:23,356 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' 2026-02-11 00:49:23,356 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' 2026-02-11 00:49:23,356 [ scc.merge] INFO 2026-02-11 00:49:23,356 [ scc.merge] INFO Repository: ome/omero-iviewer 2026-02-11 00:49:23,357 [ scc.merge] INFO Excluded PRs: 2026-02-11 00:49:23,357 [ scc.merge] INFO - PR 511 will-moore 'Support img_detail/9837058/?labelimage=9837059 as extra Tile layer' (stage: draft) 2026-02-11 00:49:23,357 [ scc.merge] INFO - PR 508 will-moore 'Broadcast channel demo' (stage: draft) 2026-02-11 00:49:23,357 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates grid shown over the image' (stage: draft) 2026-02-11 00:49:23,357 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft) 2026-02-11 00:49:23,357 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment) 2026-02-11 00:49:23,357 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment) 2026-02-11 00:49:23,357 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure) 2026-02-11 00:49:23,357 [ scc.merge] INFO Updating 7a798ce..5e2de43 2026-02-11 00:49:23,357 [ scc.merge] INFO Previously merged: 2026-02-11 00:49:23,357 [ scc.merge] INFO - PR 510 joshmoore 'Re-enable omero-test-infra' 2026-02-11 00:49:23,357 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-02-11 00:49:23,357 [ scc.merge] INFO 2026-02-11 00:49:23,357 [ scc.merge] INFO Merged PRs: 2026-02-11 00:49:23,357 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix' 2026-02-11 00:49:23,357 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure' 2026-02-11 00:49:23,357 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip' 2026-02-11 00:49:23,357 [ scc.merge] INFO - PR 499 dependabot[bot] 'Bump nanoid and mocha' 2026-02-11 00:49:23,357 [ scc.merge] INFO - PR 512 jburel 'Replace manual changelog by automated GH release step' 2026-02-11 00:49:23,357 [ scc.merge] INFO - PR 513 jburel 'Bump Python version' 2026-02-11 00:49:23,357 [ scc.merge] INFO 2026-02-11 00:49:23,357 [ scc.merge] INFO Conflicting PRs (not included): 2026-02-11 00:49:23,357 [ scc.merge] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha' 2026-02-11 00:49:23,357 [ scc.merge] INFO 2026-02-11 00:49:23,357 [ scc.merge] INFO Repository: ome/omero-mapr 2026-02-11 00:49:23,357 [ scc.merge] INFO Excluded PRs: 2026-02-11 00:49:23,357 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment) 2026-02-11 00:49:23,357 [ scc.merge] INFO Already up to date. 2026-02-11 00:49:23,357 [ scc.merge] INFO 2026-02-11 00:49:23,357 [ scc.merge] INFO Merged PRs: 2026-02-11 00:49:23,357 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient' 2026-02-11 00:49:23,357 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-02-11 00:49:23,357 [ scc.merge] INFO 2026-02-11 00:49:23,357 [ scc.merge] INFO Conflicting PRs (not included): 2026-02-11 00:49:23,357 [ scc.merge] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-02-11 00:49:23,357 [ scc.merge] INFO 2026-02-11 00:49:23,357 [ scc.merge] INFO Repository: ome/omero-metadata 2026-02-11 00:49:23,357 [ scc.merge] INFO Updating 3cd120c..55060a2 2026-02-11 00:49:23,357 [ scc.merge] INFO Previously merged: 2026-02-11 00:49:23,357 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-02-11 00:49:23,357 [ scc.merge] INFO 2026-02-11 00:49:23,357 [ scc.merge] INFO Merged PRs: 2026-02-11 00:49:23,357 [ scc.merge] INFO - PR 92 dominikl 'add resolve_rois to projectwrapper' 2026-02-11 00:49:23,357 [ scc.merge] INFO 2026-02-11 00:49:23,357 [ scc.merge] INFO Conflicting PRs (not included): 2026-02-11 00:49:23,357 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names' 2026-02-11 00:49:23,357 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate' 2026-02-11 00:49:23,357 [ scc.merge] INFO 2026-02-11 00:49:23,357 [ scc.merge] INFO Repository: ome/omero-parade 2026-02-11 00:49:23,357 [ scc.merge] INFO Excluded PRs: 2026-02-11 00:49:23,358 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft) 2026-02-11 00:49:23,358 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment) 2026-02-11 00:49:23,358 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment) 2026-02-11 00:49:23,358 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment) 2026-02-11 00:49:23,358 [ scc.merge] INFO Already up to date. 2026-02-11 00:49:23,358 [ scc.merge] INFO 2026-02-11 00:49:23,358 [ scc.merge] INFO Merged PRs: 2026-02-11 00:49:23,358 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' 2026-02-11 00:49:23,358 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' 2026-02-11 00:49:23,358 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-02-11 00:49:23,358 [ scc.merge] INFO 2026-02-11 00:49:23,358 [ scc.merge] INFO Repository: ome/omero-prometheus-tools 2026-02-11 00:49:23,358 [ scc.merge] INFO Already up to date. 2026-02-11 00:49:23,358 [ scc.merge] INFO 2026-02-11 00:49:23,358 [ scc.merge] INFO Merged PRs: 2026-02-11 00:49:23,358 [ scc.merge] INFO - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-02-11 00:49:23,358 [ scc.merge] INFO 2026-02-11 00:49:23,358 [ scc.merge] INFO Repository: ome/omero-rois 2026-02-11 00:49:23,358 [ scc.merge] INFO Excluded PRs: 2026-02-11 00:49:23,358 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) 2026-02-11 00:49:23,358 [ scc.merge] INFO Already up to date. 2026-02-11 00:49:23,358 [ scc.merge] INFO 2026-02-11 00:49:23,358 [ scc.merge] INFO Merged PRs: 2026-02-11 00:49:23,358 [ scc.merge] INFO - PR 33 jo-mueller 'Add roi to array functions' 2026-02-11 00:49:23,358 [ scc.merge] INFO - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-02-11 00:49:23,358 [ scc.merge] INFO 2026-02-11 00:49:23,358 [ scc.merge] INFO Repository: ome/omero-signup 2026-02-11 00:49:23,358 [ scc.merge] INFO Already up to date. 2026-02-11 00:49:23,358 [ scc.merge] INFO 2026-02-11 00:49:23,358 [ scc.merge] INFO Merged PRs: 2026-02-11 00:49:23,358 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-02-11 00:49:23,358 [ scc.merge] INFO 2026-02-11 00:49:23,358 [ scc.merge] INFO Conflicting PRs (not included): 2026-02-11 00:49:23,358 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)' 2026-02-11 00:49:23,358 [ scc.merge] INFO 2026-02-11 00:49:23,358 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra 2026-02-11 00:49:23,358 [ scc.merge] INFO Excluded PRs: 2026-02-11 00:49:23,358 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles) 2026-02-11 00:49:23,358 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure) 2026-02-11 00:49:23,358 [ scc.merge] INFO Updating cda3ec6..c8a0015 2026-02-11 00:49:23,358 [ scc.merge] INFO Previously merged: 2026-02-11 00:49:23,358 [ scc.merge] INFO - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT' 2026-02-11 00:49:23,358 [ scc.merge] INFO - PR 82 jburel 'Upgrade python' 2026-02-11 00:49:23,358 [ scc.merge] INFO - PR 81 erickmartins 'add ulimits to omero-server container' 2026-02-11 00:49:23,358 [ scc.merge] INFO 2026-02-11 00:49:23,358 [ scc.merge] INFO 2026-02-11 00:49:23,358 [ scc.merge] INFO Repository: ome/omero-upload 2026-02-11 00:49:23,358 [ scc.merge] INFO Already up to date. 2026-02-11 00:49:23,358 [ scc.merge] INFO 2026-02-11 00:49:23,358 [ scc.merge] INFO Merged PRs: 2026-02-11 00:49:23,358 [ scc.merge] INFO - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-02-11 00:49:23,358 [ scc.merge] INFO 2026-02-11 00:49:23,359 [ scc.merge] INFO Repository: ome/omero-virtual-microscope 2026-02-11 00:49:23,359 [ scc.merge] INFO Updating deab817..160d894 2026-02-11 00:49:23,359 [ scc.merge] INFO Previously merged: 2026-02-11 00:49:23,359 [ scc.merge] INFO - PR 20 jburel 'Build' 2026-02-11 00:49:23,359 [ scc.merge] INFO 2026-02-11 00:49:23,359 [ scc.merge] INFO Merged PRs: 2026-02-11 00:49:23,359 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-02-11 00:49:23,359 [ scc.merge] INFO 2026-02-11 00:49:23,359 [ scc.merge] INFO Repository: ome/omero-web-zarr 2026-02-11 00:49:23,359 [ scc.merge] INFO Excluded PRs: 2026-02-11 00:49:23,359 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft) 2026-02-11 00:49:23,359 [ scc.merge] INFO Updating 8f3c313..4e1e685 2026-02-11 00:49:23,359 [ scc.merge] INFO Previously merged: 2026-02-11 00:49:23,359 [ scc.merge] INFO - PR 23 lubianat 'Fix mix of .rst and .md on README' 2026-02-11 00:49:23,359 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints' 2026-02-11 00:49:23,359 [ scc.merge] INFO 2026-02-11 00:49:23,359 [ scc.merge] INFO Merged PRs: 2026-02-11 00:49:23,359 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import' 2026-02-11 00:49:23,359 [ scc.merge] INFO 2026-02-11 00:49:23,359 [ scc.merge] INFO Conflicting PRs (not included): 2026-02-11 00:49:23,359 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' 2026-02-11 00:49:23,359 [ scc.merge] INFO 2026-02-11 00:49:23,359 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror 2026-02-11 00:49:23,359 [ scc.merge] INFO Already up to date. 2026-02-11 00:49:23,359 [ scc.merge] INFO 2026-02-11 00:49:23,359 [ scc.merge] INFO Merged PRs: 2026-02-11 00:49:23,359 [ scc.merge] INFO - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-02-11 00:49:23,359 [ scc.merge] INFO 2026-02-11 00:49:23,359 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest 2026-02-11 00:49:23,359 [ scc.merge] INFO Already up to date. 2026-02-11 00:49:23,359 [ scc.merge] INFO 2026-02-11 00:49:23,359 [ scc.merge] INFO Merged PRs: 2026-02-11 00:49:23,359 [ scc.merge] INFO - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-02-11 00:49:23,359 [ scc.merge] INFO 2026-02-11 00:49:23,359 [ scc.merge] INFO Repository: ome/rOMERO-gateway 2026-02-11 00:49:23,359 [ scc.merge] INFO Already up to date. 2026-02-11 00:49:23,359 [ scc.merge] INFO 2026-02-11 00:49:23,359 [ scc.merge] INFO 2026-02-11 00:49:23,359 [ scc.merge] INFO Repository: ome/scripts 2026-02-11 00:49:23,359 [ scc.merge] INFO Excluded PRs: 2026-02-11 00:49:23,359 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn) 2026-02-11 00:49:23,359 [ scc.merge] INFO Updating 4b4c755..5b4d768 2026-02-11 00:49:23,359 [ scc.merge] INFO Previously merged: 2026-02-11 00:49:23,359 [ scc.merge] INFO - PR 231 jburel 'Create Release ' 2026-02-11 00:49:23,359 [ scc.merge] INFO - PR 229 Rdornier 'Adding support for custom user label' 2026-02-11 00:49:23,359 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images' 2026-02-11 00:49:23,359 [ scc.merge] INFO - PR 230 Rdornier 'Import from csv fix' 2026-02-11 00:49:23,359 [ scc.merge] INFO - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows' 2026-02-11 00:49:23,359 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes' 2026-02-11 00:49:23,359 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests' 2026-02-11 00:49:23,359 [ scc.merge] INFO 2026-02-11 00:49:23,359 [ scc.merge] INFO 2026-02-11 00:49:23,360 [ scc.merge] DEBUG Cleaning remote branches created for merging 2026-02-11 00:49:23,360 [ scc.git] DEBUG Calling 'git remote' 2026-02-11 00:49:23,362 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client 2026-02-11 00:49:23,362 [ scc.git] DEBUG Calling 'git remote' 2026-02-11 00:49:23,364 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:49:23,364 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate 2026-02-11 00:49:23,364 [ scc.git] DEBUG Calling 'git remote' 2026-02-11 00:49:23,366 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:49:23,366 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render 2026-02-11 00:49:23,366 [ scc.git] DEBUG Calling 'git remote' 2026-02-11 00:49:23,368 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:49:23,368 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr 2026-02-11 00:49:23,368 [ scc.git] DEBUG Calling 'git remote' 2026-02-11 00:49:23,370 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:49:23,370 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure 2026-02-11 00:49:23,370 [ scc.git] DEBUG Calling 'git remote' 2026-02-11 00:49:23,372 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:49:23,372 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage 2026-02-11 00:49:23,372 [ scc.git] DEBUG Calling 'git remote' 2026-02-11 00:49:23,374 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:49:23,374 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery 2026-02-11 00:49:23,374 [ scc.git] DEBUG Calling 'git remote' 2026-02-11 00:49:23,376 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:49:23,376 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer 2026-02-11 00:49:23,376 [ scc.git] DEBUG Calling 'git remote' 2026-02-11 00:49:23,378 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:49:23,378 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr 2026-02-11 00:49:23,378 [ scc.git] DEBUG Calling 'git remote' 2026-02-11 00:49:23,380 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:49:23,380 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata 2026-02-11 00:49:23,380 [ scc.git] DEBUG Calling 'git remote' 2026-02-11 00:49:23,382 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:49:23,382 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade 2026-02-11 00:49:23,382 [ scc.git] DEBUG Calling 'git remote' 2026-02-11 00:49:23,384 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:49:23,384 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools 2026-02-11 00:49:23,384 [ scc.git] DEBUG Calling 'git remote' 2026-02-11 00:49:23,386 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:49:23,386 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois 2026-02-11 00:49:23,386 [ scc.git] DEBUG Calling 'git remote' 2026-02-11 00:49:23,388 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:49:23,388 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup 2026-02-11 00:49:23,388 [ scc.git] DEBUG Calling 'git remote' 2026-02-11 00:49:23,390 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:49:23,390 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra 2026-02-11 00:49:23,390 [ scc.git] DEBUG Calling 'git remote' 2026-02-11 00:49:23,392 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:49:23,392 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload 2026-02-11 00:49:23,393 [ scc.git] DEBUG Calling 'git remote' 2026-02-11 00:49:23,394 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:49:23,394 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope 2026-02-11 00:49:23,395 [ scc.git] DEBUG Calling 'git remote' 2026-02-11 00:49:23,397 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:49:23,397 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr 2026-02-11 00:49:23,397 [ scc.git] DEBUG Calling 'git remote' 2026-02-11 00:49:23,399 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:49:23,399 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror 2026-02-11 00:49:23,399 [ scc.git] DEBUG Calling 'git remote' 2026-02-11 00:49:23,401 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:49:23,401 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest 2026-02-11 00:49:23,401 [ scc.git] DEBUG Calling 'git remote' 2026-02-11 00:49:23,403 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:49:23,403 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway 2026-02-11 00:49:23,403 [ scc.git] DEBUG Calling 'git remote' 2026-02-11 00:49:23,405 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-02-11 00:49:23,405 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts 2026-02-11 00:49:23,405 [ scc.git] DEBUG Calling 'git remote' 2026-02-11 00:49:23,407 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push Update component versions python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer. warnings.warn( WARNING: The wheel package is not available. WARNING: The wheel package is not available. /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer. warnings.warn( WARNING: The wheel package is not available. WARNING: The wheel package is not available. /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0' warnings.warn(tmpl.format(**locals())) /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0' warnings.warn(tmpl.format(**locals())) /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory Updating omero-gateway from 5.10.0 to 5.10.6-SNAPSHOT grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Commit all component version changes Entering 'minimal-omero-client' Entering 'omero-cli-duplicate' Entering 'omero-cli-render' Entering 'omero-cli-zarr' Entering 'omero-figure' Entering 'omero-fpbioimage' Entering 'omero-gallery' Entering 'omero-iviewer' Entering 'omero-mapr' Entering 'omero-metadata' Entering 'omero-parade' Entering 'omero-prometheus-tools' Entering 'omero-rois' Entering 'omero-signup' Entering 'omero-test-infra' Entering 'omero-upload' Entering 'omero-virtual-microscope' Entering 'omero-web-zarr' Entering 'omero-weberror' Entering 'omero-webtest' Entering 'rOMERO-gateway' Entering 'scripts' Entering 'minimal-omero-client' [detached HEAD 5006d1e] Update component versions 1 file changed, 1 insertion(+), 1 deletion(-) Entering 'omero-cli-duplicate' HEAD detached from 4777ef8 nothing to commit, working tree clean Entering 'omero-cli-render' HEAD detached from ce6e13c nothing to commit, working tree clean Entering 'omero-cli-zarr' HEAD detached from 11d3587 Untracked files: (use "git add <file>..." to include in what will be committed) .eggs/ nothing added to commit but untracked files present (use "git add" to track) Entering 'omero-figure' HEAD detached from 9cc36cde nothing to commit, working tree clean Entering 'omero-fpbioimage' HEAD detached from 3b6c05a nothing to commit, working tree clean Entering 'omero-gallery' HEAD detached from 2a621da nothing to commit, working tree clean Entering 'omero-iviewer' HEAD detached from 7a798ce nothing to commit, working tree clean Entering 'omero-mapr' HEAD detached from 0a557da nothing to commit, working tree clean Entering 'omero-metadata' HEAD detached from 3cd120c nothing to commit, working tree clean Entering 'omero-parade' HEAD detached from fb5ae86 nothing to commit, working tree clean Entering 'omero-prometheus-tools' HEAD detached from eb47378 nothing to commit, working tree clean Entering 'omero-rois' HEAD detached from bdfeb5e nothing to commit, working tree clean Entering 'omero-signup' HEAD detached from be76813 nothing to commit, working tree clean Entering 'omero-test-infra' HEAD detached from cda3ec6 nothing to commit, working tree clean Entering 'omero-upload' HEAD detached from 100f6ae nothing to commit, working tree clean Entering 'omero-virtual-microscope' HEAD detached from deab817 nothing to commit, working tree clean Entering 'omero-web-zarr' HEAD detached from 8f3c313 nothing to commit, working tree clean Entering 'omero-weberror' HEAD detached from 70b01ed nothing to commit, working tree clean Entering 'omero-webtest' HEAD detached from 5bfef29 nothing to commit, working tree clean Entering 'rOMERO-gateway' HEAD detached from 7b5d64d nothing to commit, working tree clean Entering 'scripts' HEAD detached from 4b4c755 nothing to commit, working tree clean [detached HEAD 3a7c9c2] Update component versions 1 file changed, 1 insertion(+), 1 deletion(-) Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 2026-02-11 00:50:10,655 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 2026-02-11 00:50:20,021 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 2026-02-11 00:50:22,696 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2026-02-11 00:50:27,419 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2026-02-11 00:51:07,247 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci [Pipeline] archiveArtifacts Archiving artifacts [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS